lowQualScore : 11111111111111111111111 111111111111111111111111111111111111111
lowQualScore : 1 1111 777777777777777777777 1 11111 77777777 1 11111 666666666666666666666666666666666666666666666666 1 3333333 7777777777777777777777777 111111 77777777777777777777777777777777777777777777777777 222 1 11 1 11111111111111111111111 22222 1 11 1 111111 11 1 1 333333333333333333333333333333333333333 1111 1111 1111111 22 111111 1 1 11 222222 333333333333333 8888888888888888888888888888888 44444444444444444444 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999 111111 1 1 222222 1 11111111 1
lowQualScore : 6 7 2 7777 666666666666666666666 6 5 6 9 77777 5 88888888 4 3 77777 1 333333333333333333333333333333333333333333333333 99 6 5 2222222 4 66 6666666666666666666666666 222222 55 777 4 0 99999999999999999999999999999999999999999999999999 333 1 3 22 7 3 3 0 77777777777777777777777 999 55555 0 6 5 7 66 3 666666 22 3 1 9 111111111111111111111111111111111111111 0000 777 5 0000 5 4444444 11 666666 0 4 77 1 6 99 33 6 1 3 7 2 3 6 888888 3 000000000000000 4 8888888888888888888888888888888 2 4 1 33333333333333333333 5 5 555 5 5 4 000000000000000000000000000000000000000000000000000000000000000000000000000000000000 666666 0 2 2 8 5 5 1 5 999999 9 6 66666666 5 6 6
lowQualScore : . . . .... ..................... . . . . ..... . ........ . . ..... . ................................................ .. . . ....... . .. ......................... ...... .. ... . . .................................................. ... . . .. . . . . ....................... ... ..... . . . . .. . ...... .. . . . ....................................... .... ... . .... . ....... .. ...... . . .. . . .. .. . . . . . . . ...... . ............... . ............................... . . . .................... . . ... . . . .................................................................................... ...... . . . . . . . . ...... . . ........ . . .
lowQualScore : 0 0 8 0000 666666666666666666666 0 0 0 6 88888 7 22222222 3 3 88888 9 000000000000000000000000000000000000000000000000 22 0 0 4444444 4 11 4444444444444444444444444 888888 55 888 4 7 00000000000000000000000000000000000000000000000000 555 0 5 55 5 5 5 3 88888888888888888888888 111 33333 9 6 7 3 77 3 444444 00 0 2 4 000000000000000000000000000000000000000 6666 444 0 6666 1 5555555 11 444444 5 4 99 4 7 22 22 7 0 8 0 5 2 5 888888 2 888888888888888 0 5555555555555555555555555555555 2 8 5 00000000000000000000 0 0 888 7 0 3 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 444444 3 1 2 1 7 7 4 3 999999 5 7 88888888 0 0 0
consensus : NNNNNNNNNNNNNNNGGTGGAAATGGTTG---CAGTAATT------ACATATCTGG-----CAGGATGACATTTGATAACGATGATCGTGACAA-TTAGATGCA---GCAATCCGGAGGTCAT--N--GGTCAGGTCATC--C-TG-C---G---G---GCGTGC-AG-----TTGACA--AC-----CG-ATGAGTACGGTCAATCTG---CGC-GTG--ACATC-T--------TG------A-----TCGAGTCC------GTCCTATA--TAAAC---T-CGTGTT----GGA-AGAA-------C---ACCA-T--TC-----TCACGA-ATGCTGCAGTAATTACATCTGGCAGGATGACANTTGATAACGATGATCGTGACAATTAGAT-----ATGCAAT---C-GG-AGGTCAT--T--GGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACATCTTG--NACA-----A---CA------T-T-G-------C---CT----ATA--TAAACT-C----GTGTTGGAGAGAACAA---CTTCACC-ATTCTCACGAT------GGAANCACAACNACCC--ACTCCAAG-GG--AATCTTTCCCN-GGAAT-TCCGACCAACAATAATGCANATGNC------ATGGAAACCGACGTCCTTACGGNGGAACA-------GCTGTATCGTATGNAGAT--A---GGCCCAGAAGGAGTTAGCTGAGACAGAGAAAAAGTTAC---------A---------CAGGGCCTGCGAAC-AGATA-GCCCTCCTTGGCT-GCAAGTTGAGGGAGGTGCA----------G----------ACCG----------GGC-A----------AC-GG--A-----------GGT-G----------TTCCGG------TATAGCTACCGCCTACAGATGGACGTCATT-GAA-GGCTTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCC--AGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( gi|3 ) : TTCACGAGGAAACAAGGTGAATATAGCTA---CAGTAATT------TCACATC--A-----CAAGAGGATAATTGCTAAGGGTGATTGTGATAA-TTAGATGCACGCGCAATCAGGAAGTCAT--A--GGTCAGGTCATT--T-TG-T---G---G---GCTTGC-GT-----TTGATA--TG-----CG-ATGAATACTGTCAATATC---CGC-GTG--ACATC-T--------TG------A-----TTGAGTTT------GTCCTATA--TAAAC---T-CGTGTT----AGA-ACAA-------C---ACCA-T--TC-----TTACAA-ATTCTGCAGTACTGACATCTGGCAGGAGGACGATTGATAGCAATTATTGTGATAATTACATTATATATGTCAT---T-GG-AGGTCAT--A--GGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG--TACA-----A---CA------T-----------C---CT----ATA--TAAACT-C----GCGTTGGAAAGAGCAG---CTTCACC-TTTCTCACGAT------GGAATCACAACAACTC--ACTCCAAG-GG--AATCTTTCCCT-GGAAT-TCCGACCAACAATAATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAG-AGGCCCAGAGGGAGTTAGCCGAGACAGAGAAAAAGTTAC---------A---------TAGGCCCTGCGAAC-AGATA-ATCCTCCTTGGCT-GGAAGTTGAGGGAGGTGCA----------G----------ACCA----------GGC-A----------AC-GA--A-----------TGT-G----------TTCCGG------TATAGATACCACCTAAAAATGGACATCATT-AAA-GGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCC--AGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGT
gi|1 : GGTGGAAATAACTATGTCGGTAATTATATATTCATA-C--ATATGGCAGGATGACAATTGATCACAATGATTGTGACAA-TGAGAT------GCAATCCGGAAGTCAT--T--GGTCAGGTC-TT--C-TA-T---GTCAA---GCGTGC-AG-----TTGACA--AC-----CA-ATGAGTACGGTCA--ATC---AGT-GCGACACATC-T--------TG------AACATGTTGAGTCT------GCCCTATATTTAAAC---C-CGTGGTGACAAGA-ACAACTT----C---ACCA-T--TC-----TCACGA-
gi|2 : taattaattttaataattagatgcaatctggaggtcataggttaggtcattaattgtgacgaactttcagttgacaagtgacaaccaatgagttcggccaatcagcgcatggcaccgtgaaaaccgtgattgagtttcactctgtgctatataaatttgtTGGTTG---CAGTAATT------ACATTTG--G-----CAGGATGACATTTGATATCGGTGACTGTGATAA-TTAGAT------GCAATCCGGTGGTCAT--T--GATCAAGCC-CT--C-GG-TGACG---G---GCGTGC-AG-----TTGACA--AC-----CA-AACAGTATGATCAATCCG---CGC-GTG--ACATC-T--------TGAACAC-A-----TCAAGTCC------GTCCTATA--TAAAC---T-CGTGTT----GGA-AAGAGAAACTTC---ACCA-T--TC-----TCACGA-tggaagcacagccatccactggaaacgaatctttcacagaaatgtccaccaccgatgatacatatgtcatcgttatggaagacgcggaggaacaggggcaggttgaccgtttgaagatggagttggttctgatggatagaaagctgcaccgggcctgtgaacaagttgatttcctgagctataggttggggaaggtgcaggagagatacgaccgggcaaaggagaggagccacccgtcgttcctgtttagttaccgcctccagatgtctgtcatcgaacgagtcaggagggtgtaccaggactacgcccagatccaggccgagaagacgaaaaatattcggggaagttctggtcgactcagactacgactttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|10 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactcGTTG---CAATAATT--------ACATCTGG-----CAGAATGGCATTTGATAACGATGATCGTGATAG-TTAAA-----ATGCAATTCGCAAGTCATCAATTGGTCAGGCCATC--TATGAC---A---G---GCGTGC-AG-----TTGTCA--AC-----CC-ATGAGTACGGTCTATCTG---CGC-GTG--ACAT-------------------A-----CCGAGTTC------GTCCTATA--Ttggaagaacagctactcacgtcaatcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|11 : gtgcctgtgataacactgacttgaaacacattgggtcatacgtgagtactctgtgacgggcgtgaggttgacaaccaatgagtacggtcaatcagcgcgtggtattttgaacacatcaagtttgtcctaactaaatttgagttggaaactaccatacgctcaccaatGTTG---CAGTGATT------ACATATG--G-----TAGGTTGGCAGTTGATAACGATGAACGTGACAAATTAGATGCA------ATCCAGAGGTCAT--T--GGTCAGGTCATC--T-tta
gi|16 : ataaacacgtcgcgtggaaagaactctaccattctcaccaatGTTG---CAGTAATT--------ACATCTGG-----CAGGATGACATTTGATCACGGTGACTGTGATAA-TTAGATGCgtaacgggagagcagttgaccaccaccaatgcgtgcgtggcctatataaacacaaaaatgttgaaaagaacaatttcgccattctcacgatggaaccgcaacgaatcactccaat
gi|1 : tgagtacggtaaatcagcgcgtgacatctttaacacaccgagtttgacatataaactcgtatcggagagaactcagTAATTTTAATAA-TTAGATGCA------ATCTGGAGGTCAT--A--GGTTAGGTCATTAAT-TG-T---G---ACGAACTTTC-AG-----TTGACAAGTGACAACCA-ATGAGTTCGGCCAATCAG---CGC-ATG--GCACCGTGAAAACCGTG------A-----TTGAGTTTCACTCTGTGCTATA--TAAAT---T-TGTGGT----GGA-AATA-----------ACTA-TG-TCGGTAATTATAT-ATTC------AT--ACATATGGCAGGATGACAATTGATCACAATGATTGTGACAATGAGAT-------GCAAT---CCGG-AAGTCAT--T--GGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-----A-----A---CA------TGTTGAGTCTGCC---CT----ATATTTAAACC-C----GTGGTGACAAGAACAA---CTTCACC-ATTCTCACGAT------GGAAGCACAGCCATCC--ACTGGAAA-CG--AATCTTTCACA-GAAATGTCC-ACCACCGATGATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGATGGAGTTGGTTCTGATGGA--TAG-------------AAAGCTGC---------A---------CCGGGCCTGTGAACAAGTTG-AT-TTCCTGAGCT-ATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACCG----------GGC-A----------AA-GG--AGAGGAGCCACCCGTCG----------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATC-GAACGAGTCAG-GAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGA------G-AAG---------ACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|8 : taatATTGTGACGA-TTAGATG-A-----AATCGGGAGGTCAT--A--GGTTAGGTCATC--CGTGAC---G---G---GCGTGC-AG-----TTGACA--AT-----CT-ATAAGTACGGTCAATCTG---CGC-GTG--ACATC-T--------TGAACAC-A-----GTGAATCT------GTCCTCTA--TAAAC---T-CGTGGTGGA-AGA-ACAACTT----C---ACAG-T--TT-----TCACGA-ATGATATAATAATGATATCTGGCAGGGAGATAATGAACAACGATCATT----CAA---------GTCTATC-----T-GG-AGGTCAT--T--GATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG--AAC------A---CA------TTTCGTCTGTA-C---CT----ATA--AAAACC-C----GTGTTGGAGAGAAGAT---CTTCACC-ATTCTCACGAT------Gctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|9 : ttacaagataacaaaataggaatgaagctctgataggtacatgtagataattATCTGGATGTCAT--T--TGTCAGGTCATC--T-GG-TGACG---G---GCGTGCTGTTACAGTTGACA---A-----CGAATGAGTTCGATCAAACTG---CGC-ATG--ACGTC-T--------TGAAACACA-----TTTAGTCC------GT-CTATA--AAAAA---TCCGTGCT----GGAGAGAAGATCCTTC---ACCACT--TC-----TCACGATATGCTG
gi|10 : gccagtttgacagtctggcagttacgttcaatctagctcgtgacattattttgaacacatgactcccgttcctaaataactgcactgttgtgaaagaaacactttaccgtatatattaataatctacatactggcagggagcataatgaataacgatcatGTCAT--A--CGTGAG--TACT--C-TG-T---GACGG---GCGTGA-GG-----TTGACA--AC-----CA-ATGAGTACGGTCAATCAG---CGC-GTG--GTATT-T--------TG------AACACATCAAGTTT------GTCCTAAC--TAAAT---T-TGAGTT----GGA-A--A-------CT--ACCA-TACGC-----TCACCA-ATGTTGCAATAATTACATCTGGCAGAATGGCATTTGATAACGATGATCGTGATAGTTAAA------ATGCAAT---T-CGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACggaagcacaactctccaactccccgtagaatctgtccccaggaatgtcaac
gi|2 : gtgcctgtgataacactgacttgaaacacattggCAGGTCATC--CATG-AA--G---G---GCGTGC-AG-----TTGACA--GC-----CG-TTGAGCACGGTAAATCTTTAACACAGTG--ACAC--------------------------TGAGTTT------GTCCTGAA--TAAGC---T-CGTGTT----GGAGAGAA-------C-----------TC-----T----G-GTT--GCAGTAATTACATTTGGCAGGATGACATTTGATATCGGTGACTGTGATAATTAGAT-------GCAAT---CCGG-TGGTCAT--T--GATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG--AACACATCAAGTCCG------T-----------C---CT----ATA--TAAACT-C----GTGTTGGAAAGAGAAA---CTTCACC-ATTCTCACGAT------GGAAGAACAGCTACTC--ACGTCAAataccgagttcgtcctatattta
gi|16 : TGAGTACGGT-AA-ATCAG-CGC-GTG--ACATC-T--------TT------AACACACCGAGTTT------GAC--ATA--TAAAC---T-CGTATC----GGAGAGAA-------C-------------------T-CAG-GTT--GCAGTAATTACATCTGGCAGGATGACATTTGATCACGGTGACTGTGATAATTAGATtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|11 : A--TAAACACGT-CGCGTG----GAA-AGAA-------CTCTACCA-T--TC-----TCACCA-ATGTTGCAGTGATTACATATGGTAGGTTGGCAGTTGATAACGATGAACGTGACAA----AT--TAGATGCAATC--C-AG-AGGTCAT--T--GGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTGGC---------------------------------------------CT----ATA--TAAACA-CAAAAATGTTGAAAAGAACAA---TTTCGCC-ATTCTCACGAT------GGAACCGCAACGAATC--ACTCCAAgc
gi|9 : TCATATCT-GG-ATGTCAT--T--TGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTG--AAAC-----A---CA------TTTAGTCCG---T---CT----ATA--AAAAATCC----GTGCTGGAGAGA--AGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAAC-TCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAACt
gi|10 : gccagtttgacagtctggcagttacgttcaatctagctcgtgacattattttgaacacatgactcccgttcctaaataactgcactgttgtgaaagaaacactttaccgtatatattaataatctacatactggcagggagcataatgaataacgaCAT---T-GG---GTCAT--A--CGTGAG-TACTCTG-TGACGGGCGTGA------GGTTGACAACCAATGAGTACGGTCAATCAGCGCGTGGTATTTTGAACACA-----T---CAAGTTTGT-----------C---CT----AAC--TAAATT-T----GAGTTGGAAA
gi|16 : gtgcctgtgataacactgacttgaaacaTGAGTACGGTAAATCAGCGCGTGACATCTT---TAAC-----A---CA------C-----------CGAGTTTGACATA--TAAACT-C----GTATCGGAGAGAACctaccatacgctcaccaatgttgcaataattacatctggcagaatggcatttgataacgatgatcgtgatagttaaaatgcaattcgcaagtcatcaattggtcaggccatctatgacaggcgtgcagttgtcaacccatgagtacggtctatctgcgcgtgacataccgagttcgtcctatattta
gi|5 : TATGGTCAATCTGCGAGAGACATCTTG--TAC----------------------------------C-------------ACT-C----GCATTAGAAAGAACAG---CTTCACC-ATTCTCAAGAT------GGAACCACAACAACCC--ATTCCAAG-GG--AATCTTTCCCT-GGAAT-TCCGACCAACAATAATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCCAT--GGCCCAGAGGGAGTTAGCTGAGACAGAGAAAAAATTAC---------A---------CAGGGCCTGCGAAC-AGATA-GCCCTCCTTGGCT-GTAAATTGAGGGAGGTGCA----------G----------ACCA----------GGC-A----------AT-GA--A-----------GGT-G----------TTCCGG------TATAGATACCACCTAAAAATGGACATCATT-AAA-GGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCC--AGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTtcaggttgcagtaattacatctggcaggatgacatttgatcacggtgactgtgataattagatgc
gi|18 : AGAGAAGAA---CGTCACC-ATTCTCACGAT------GGAACCACAACTATCC--ACTCCTAA-AG--AACCTTTCCCA-GGAGA-GTCGACCGACAacacaaggcccgcgaacagata
gi|13 : AACCACTG--AC-CCAGA-GGCCAAG-TTTCCCA-GAAAA-TCCGACCAACAATAATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------GGTCCATAAAGAGTTAGCTGAGACCGAGAGAAAATTAC---------AACGAGTCTTCAGGGCCTGCGAAC-AGATG-ACCg
gi|4 : CAAG-GG--AATCTTTCCCT-GGAAT-TCCGACCAAC-AT-ATGTATA---C------A---AAA--------------ATGGAATA--------------CGGATGGAAAT------GGCCCAGAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTA---------CAAGGCCTGCGAAC-AGATA-GCCCTCCTTGGCT-GTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGC-A----------AC-GG--A-----------TGT-C----------TTCTGG------TATAACCACCGCCTACAAATGGACATCATT-GAA-AACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGC--AGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|2 : tAGAAGGAGTTGACTCTAACGGAGGAAAAGTTCC---------G---------GAGAGCCTGCGAGC-AGATT-GTCTACCTGAACT-GCAGGCTTCGGGAGGTGCA----------GGACAGATATGACCG----------GGCCA----------AG-GAG-A-----------TGG-GCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAA-GAGTCA-AGACCATGTACCATG--ACTACGCCGAGATCCAGGCTGAAAGGATG--AGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|14 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcaatcgacgatgcggtggaacagattcactttatgaAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCC---------G---------GCGGGCTTGCGAAC-AGATAGATCTTC--TGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACCG----------GGC-C----------ACAGACGA-----------GGT-C----------TTCCGA------TACACCTACCGTCTacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|6 : atgtgatgaggatagatttgctgaAAGAGT-AC---------A---------CAAGGCCCGCGAAC-AGATA-GCCCTCTTTGGCT-GCAAGTTGAGGGAGGTGCA----------G----------ACCA----------GGC-ACGACCGGGCAAC-GG--A-----------GGT-G----------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATT-AAA-GGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCC--AGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGTtcaactg
gi|7 : agtcggctctgatgTAC---------A---------CAGGGCCTGCGAAC-AGATA-GCCCTCCTTGGCT-GTAACTTGAGGAAGGTGCA----------G----------ACCA----------GGC-A----------AC-GG--A-----------GGT-G----------TT------------------CCACCTACAGATGGACATAATT-AAA-GGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCC--AGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|19 : aatcggttctgacgacgagACCGCCAACAAATGGATATCGTT-GAA-GACTTGCAAAAAGTGT-TCCT-TGACTACGCCATAACCCAGGCGGAacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 1111111111111111111111111111
lowQualScore : 1 1 3333333333 2 444 55555 1 44444444444 22222222 1111 777777777777777777777777777 222222222 1111 1 44444444444444444444444444 4444444444444444444 1111 111111 0000000000000000000000000000 1111 111111 222222 1111 2222222 4444444444444444444 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 6 7 6 6 6 7 6 4444444444 77 0 3 000 2 6 0 6 33333 2 1 1 66666666666 6 22222222 7 77 5 7777 5 0 444444444444444444444444444 555555555 5 2 0000 888 2 0 1 99999999999999999999999999 6 0 88 5 0 5 1 6 66 3333333333333333333 2222 1 5 666666 0 3 0 1 3 4444444444444444444444444444 999 5 2222 2 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 1 0 3 333333 88 9999 7 1111111 1 66 44 9999999999999999999 0 0 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 2 3 11 1 444 0 2 0 1 1
lowQualScore : . . . . . . . .......... .. . . ... . . . . ..... . . . ........... . ........ . .. . .... . . ........................... ......... . . .... ... . . . .......................... . . .. . . . . . .. ................... .... . . ...... . . . . . ............................ ... . .... . .. . ...... . . . . . .. . . . . . . . . ...... .. .... . ....... . .. .. ................... . . ......... . . .................................. ... ........................... ...... . . . .. . ... . . . . .
lowQualScore : 0 0 0 0 0 0 0 5555555555 00 0 0 555 5 0 7 7 33333 0 0 4 66666666666 7 00000000 8 99 7 9999 7 1 111111111111111111111111111 000000000 7 1 6666 888 0 0 4 00000000000000000000000000 2 2 11 0 5 0 0 2 11 0000000000000000000 1111 6 7 444444 5 1 8 0 0 0000000000000000000000000000 777 7 1111 5 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 0 8 8 000000 33 7777 5 7777777 0 77 77 3333333333333333333 9 8 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 0 88 0 444 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGANGACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--C-TGTGAC-GGGCGTGCGGTT-GACAA-------CCGATG--AGT-ACGGTCAATCN---GCGC-GTGACATC---T--------TGA-----NC-----GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TCTCACGAATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAAT-CCGGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTGAAC-ACAT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCCGAGACGGAGAAAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGGAAATGGTTGCAGTAATTACATATCTGGCAGGATGACATTT-GATAACGATGATCGTGACAATTAGATGCA---GCAATCCGGAGGTCATNGGTCAGGTCATC--C-TG---C-GGGCGTGCAGTT-GACAA-------CCGATG--AGT-ACGGTCAATCT---GCGC-GTGACATC---T--------TGA-----TC-----GAGT------CC-GT-CCTATATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TCTCACGAATGCTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATCGTGAC-AATTAGAT-----ATGCAAT-C-GGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACATCTTGNACAACAT--------T------G-------CCTATA--TAAACT-C----GTGTTGGAGAGAACA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCANATGNC------ATGGAAACCGACGTCCTTACGGNGGAACA-------GCTGTATCGTATGNAGAT----A-G----GCCCA-GAAGGAGTTAGCTGAGACAGAGAAAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACGTCATTGAAGGCTTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATAATTAGATGCA------ATCTGGAGGTCATAGGTTAGGTCATTAAT-TGTGAC-GAACTTTCAGTT-GACAAGTGACAACCAATG--AGT-TCGGCCAATCA---GCGC-ATGGCACCG--TGAAAACCGTGA-----TT-----GAGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---T--G-TCGGTAATTATATATTCAT--ACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAGAT-------GCAAT-CCGGAAGTCAT----TGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTGAAC-ATGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT--------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taattaatttGGTCATACGTGAG--TACT--C-TGTGAC-GGGCGTGAGGTT-GACAA-------CCAATG--AGT-ACGGTCAATCA---GCGC-GTGGTATT---T--------TGAACACATC-----AAGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA-A--A-CT--A---CCA---TACGCTCACCAATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTAAA------ATGCAATTC-GCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TCTCACCAATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------ATGCAATCC-AGAGGTCAT----TGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG-------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAaccgagttcgtcctatattta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------G----GTCCA-TAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : ATGAGGAT----A-GATTTGCTGAAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgTG--AGT-ACGGTAAATCA---GCGC-GTGACATC---T--------TTAACACACC-----GAGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C------------------TCA-G---GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAGAT-----actg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-gc
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC--CATG---AAGGGCGTGCAGTT-GACAG-------CCGTTG--AGC-ACGGTAAATCTTTAACACAGTGACA-C---T-----------------------GAGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TCT---G---GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAGAT-------GCAAT-CCGGTGGTCAT----TGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTGAAC-ACAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA--------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT--T-TG---T-GGGCTTGCGTTT-GATAT-------GCGATG--AAT-ACTGTCAATAT---CCGC-GTGACATC---T--------TGA-----TT-----GAGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TCTTACAAATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATATGTCAT-T-GGAGGTCAT----AGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTGTACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAGA-G----GCCCA-GAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT------G----GCCCA-GAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTGTAC-----------------------------C---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCC--ATG----GCCCA-GAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AAGAGT-ACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccagtcggctctgatgAAGAGT-ACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : agtcggctctgatgAATCGGTTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|7 : TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacacagggcctgcgaacagatagccctccttggctgtaacttgaggaaggtgcagaccaggcaacggaggtgttccacctacagatggacataattaaaggcgtataaaatatgtacaatgactttgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacatttcagtcggctctgacgacgagtacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|8 : aatcggttctgacgacgagTCTGATAGG-T-ACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC--CGTGA--C-GGGCGTGCAGTT-GACAA-------TCTATA--AGT-ACGGTCAATCT---GCGC-GTGACATC---T--------TGA-----ACACAGTGAAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TTTCACGAATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT------------CTAT-CTGGAGGTCAT----TGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTGAAC-ACATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcCAGTTTGACAG-------TC--TGGCAGTTACGTTCAATCTA--GCTC-GTGACATTATTT--------TGA-----ACACAT-GACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TACCGTATATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT-------------------------AT-CTGGATGTCAT----TTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACACAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 11 222 1 222 33333 1111 22222222 1111 6666666666666666666666666666 111111 1111 1 55555555555555555555555555555 33333333333 1111 111111 88888888888888888888888888888888 1111 111111 222222 1111 2222222 4444444444444444444 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 88 666 22 5 1 000 1 6 33333 7 3 1 8888 0 22222222 7 77 5 6666 5 0 5555555555555555555555555555 666666 5 5 1 0000 888 2 0 1 66666666666666666666666666666 4 2 5 5 0 5 1 0 66 99999999999 1 1 2222 1 5 666666 0 3 0 4 22222222222222222222222222222222 777 5 2222 1 1 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 0 3 333333 88 9999 7 1111111 1 66 33 9999999999999999999 0 666 1 0 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 1 11 1 444 0 2 0 1 1
lowQualScore : .. ... .. . . ... . . ..... . . . .... . ........ . .. . .... . . ............................ ...... . . . .... ... . . . ............................. . . . . . . . . .. ........... . . .... . . ...... . . . . ................................ ... . .... . . .. . ...... . . . . . .. . . . . . . . ...... .. .... . ....... . .. .. ................... . ... . . ......... . . .................................. ... ........................... ...... . . .. . ... . . . . .
lowQualScore : 00 000 00 5 0 000 0 7 33333 3 7 4 0000 8 00000000 8 99 7 7777 7 1 4444444444444444444444444444 444444 7 7 0 6666 888 0 0 4 88888888888888888888888888888 5 2 0 0 5 0 0 9 11 88888888888 6 7 1111 6 7 444444 5 1 8 2 11111111111111111111111111111111 444 7 1111 4 0 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 8 2 000000 33 7777 8 7777777 0 77 99 3333333333333333333 4 111 9 9 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 88 0 444 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN---GCGC-GTGACATC---T--------TGAACACA--G-----AGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTGNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGANGACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN---GCGC-GTGACATC---T--------TGANC-----G-----AGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CAT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCCGAGACGGAGAAAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATTTTAATAATTAGATGCA-----A-TCTGGAGGTCATAGGTTAGGTCATTAATTGTGACGAACTTTCAGTTGACAAGTGACAACCAATG--AGT-TCGGCCAATCA---GCGC-ATGGCACCG--TGAAAACCGTGATT-----G-----AGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---TG-TCGGTAATTATATATT-CA------TACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAGAT-------GCAATCCGGAAGTCAT----TGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-AACA-TGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT--------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taatGGTCATACGTGAG--TACT--CTGTGACGGGCGTGAGGTTGACAA-------CCAATG--AGT-ACGGTCAATCA---GCGC-GTGGTATT---T--------TGAAC-----ACATCAAGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA-A--A-CT--A---CCA---TACGC--TCACCA-ATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTAAA------ATGCAATTCGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATACCG-AGTT-CGT-----------------------CCTATA--Tctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TC--TCACCA-ATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------ATGCAATCCAGAGGTCAT----TGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG--------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAtta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------G----GTCCA-TAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : ATGAGGAT----A-GATTTGCTGAAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgTG--AGT-ACGGTAAATCA---GCGC-GTGACATC---T--------TTAACACACCG-----AGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C--------------------TCA-G----GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAGAT-----actg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-gc
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC--C-ATGAAGGGCGTGCAGTTGACAG-------CCGTTG--AGC-ACGGTAAATCTTTAACACAGTGACA-C---T------------------G-----AGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TC--T---G----GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAGAT-------GCAATCCGGTGGTCAT----TGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG-AACA-CAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA--------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT--TTGTG---GGCTTGCGTTTGATAT-------GCGATG--AAT-ACTGTCAATAT---CCGC-GTGACATC---T--------TGATT-----G-----AGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TC--TTACAA-ATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATATGTCATT-GGAGGTCAT----AGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG-TACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAGA-G----GCCCA-GAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT------G----GCCCA-GAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTG-----------------T------A-------CC---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCC--ATG----GCCCA-GAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccAGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : AATCGGTTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|7 : TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacacagggcctgcgaacagatagccctccttggctgtaacttgaggaaggtgcagaccaggcaacggaggtgttccacctacagatggacataattaaaggcgtataaaatatgtacaatgactttgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacatttcagtcggctctgacgacgagtacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|8 : aatcggttctgacgacgagTCTGATAGG--TACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC--C-GTGACGGGCGTGCAGTTGACAA-------TCTATA--AGT-ACGGTCAATCT---GCGC-GTGACATC---T--------TGAACACAGTG-----AAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TT--TCACGA-ATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT------------CTATCTGGAGGTCAT----TGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG-AACA-CATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcTTGACAG-------TC--TGGCAGTTACGTTCAATCTA--GCTC-GTGACATTATTT--------TGAACACAT-G-----ACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TA--CCGTAT-ATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT-------------------------ATCTGGATGTCAT----TTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACA-CAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 11 111 1 222 33333 1111 22222222 111 3333333333 111111 1111 1 55555555555555555555555555555 33333333333 1111 111111 88888888888888888888888888888888 1111 111111 222222 1111 2222222 4444444444444444444 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 88 999 22 5 1 000 1 6 33333 7 3 1 8888 0 22222222 7 77 5 66 000 1 9999999999 666666 5 5 1 0000 888 2 0 66666666666666666666666666666 4 2 5 5 0 5 1 0 66 99999999999 1 1 2222 1 5 666666 0 3 0 4 55555555555555555555555555555555 777 5 2222 1 1 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 0 3 333333 88 9999 7 1111111 1 66 33 9999999999999999999 0 33 7777 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 1 11 1 444 0 2 0 1 1
lowQualScore : .. ... .. . . ... . . ..... . . . .... . ........ . .. . .. ... . .......... ...... . . . .... ... . . ............................. . . . . . . . . .. ........... . . .... . . ...... . . . . ................................ ... . .... . . .. . ...... . . . . . .. . . . . . . . ...... .. .... . ....... . .. .. ................... . .. .... ......... . . .................................. ... ........................... ...... . . .. . ... . . . . .
lowQualScore : 00 000 00 5 0 000 0 7 33333 3 7 4 0000 8 00000000 8 99 7 77 000 7 7777777777 444444 7 7 0 6666 888 0 0 88888888888888888888888888888 5 2 0 0 5 0 0 9 11 88888888888 6 7 1111 6 7 444444 5 1 8 2 66666666666666666666666666666666 444 7 1111 4 0 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 8 2 000000 33 7777 8 7777777 0 77 99 3333333333333333333 4 55 0000 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 88 0 444 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----AT-G--AGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A--G--AGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTGNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATTTTAATAATTAGATGCA-----A-TCTGGAGGTCATAGGTTAGGTCATTAATTGTGACGAACTTTCAGTTGACAAGTGACAACCAATG--AGT-TCGGCCAATCA-GCGCATGGCACC---GTGAAAACCGTGATTG--AGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---TG-TCGGTAATTATATATT-CA------TACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAGAT-------GCAATCCGGAAGTC----ATTGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-AACA-TGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT--------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taatGGTCATACGTGAG--TACT--CTGTGACGGGCGTGAGGTTGACAA-------CCAATG--AGT-ACGGTCAATCA-GCGCGTGGTATT---TTGAACAC----ATCA--AGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA---AA-CT--A---CCA---TACGC--TCACCA-ATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTAAA------ATGCAATTCGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATACCG-AGTT-CGT-----------------------CCTATA--Tctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TC--TCACCA-ATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------ATGCAATCCAGAGGTC----ATTGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG--------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAtta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------G----GTCCA-TAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : ATGAGGAT----A-GATTTGCTGAAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgTG--AGT-ACGGTAAATCA-GCGCGTGACATC---TTTAACAC----ACCG--AGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C--------------------TCA-G----GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAGAT-----actg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-gc
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC--C-ATGAAGGGCGTGCAGTTGACAG-------CCGTTG--AGC-ACGGTAAATCT-T----TAACACA---GTGA-CAC----T--G--AGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TC--T---G----GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAGAT-------GCAATCCGGTGGTC----ATTGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG-AACA-CAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA--------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT--TTGTG---GGCTTGCGTTTGATAT-------GCGATG--AAT-ACTGTCAATAT-CCGCGTGACATC---TTGATT---------G--AGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TC--TTACAA-ATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATATGTCATT-GGAGGTC----ATAGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG-TACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAGA-G----GCCCA-GAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT------G----GCCCA-GAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTG-----------------T------A-------CC---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCC--ATG----GCCCA-GAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccAGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : AATCGGTTCTGACGACGAG-----TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|8 : TCTGATAGG--TACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC--C-GTGACGGGCGTGCAGTTGACAA-------TCTATA--AGT-ACGGTCAATCT-GCGCGTGACATC---TTGAACAC----A--GTGAAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TT--TCACGA-ATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT------------CTATCTGGAGGTC----ATTGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG-AACA-CATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcTTGACAG-------TC--TGGCAGTTACGTTCAATCTAGCTCGTGACATTATTTTGAACAC----AT-G--ACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TA--CCGTAT-ATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT-------------------------ATCTGGATGTC----ATTTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACA-CAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 11 111 1 222 33333 1111 22222222 111 22222222 111111 1111 1 55555555555555555555555555555 33333333333 1111 111111 88888888888888888888888888888888 1111 111111 222222 1111 2222222 4444444444444444444 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 88 999 22 5 1 000 1 6 33333 7 3 1 8888 0 22222222 7 77 5 66 000 22 99999999 666666 5 5 1 0000 888 2 0 66666666666666666666666666666 4 2 5 5 0 5 1 0 66 99999999999 1 1 2222 1 5 666666 0 3 0 4 55555555555555555555555555555555 777 5 2222 1 1 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 0 3 333333 88 9999 7 1111111 1 66 33 9999999999999999999 0 22 7777 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 1 11 1 444 0 2 0 1 1
lowQualScore : .. ... .. . . ... . . ..... . . . .... . ........ . .. . .. ... .. ........ ...... . . . .... ... . . ............................. . . . . . . . . .. ........... . . .... . . ...... . . . . ................................ ... . .... . . .. . ...... . . . . . .. . . . . . . . ...... .. .... . ....... . .. .. ................... . .. .... ......... . . .................................. ... ........................... ...... . . .. . ... . . . . .
lowQualScore : 00 000 00 5 0 000 0 7 33333 3 7 4 0000 8 00000000 8 99 7 77 000 44 66666666 444444 7 7 0 6666 888 0 0 88888888888888888888888888888 5 2 0 0 5 0 0 9 11 88888888888 6 7 1111 6 7 444444 5 1 8 2 66666666666666666666666666666666 444 7 1111 4 0 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 8 2 000000 33 7777 8 7777777 0 77 99 3333333333333333333 4 00 0000 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 88 0 444 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATTTTAATAATTAGATGCA-----A-TCTGGAGGTCATAGGTTAGGTCATTAATTGTGACGAACTTTCAGTTGACAAGTGACAACCAATG--AGT-TCGGCCAATCA-GCGCATGGCACC---GTGAAAACCGTGA-TTGAGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---TG-TCGGTAATTATATATT-CA------TACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAGAT-------GCAATCCGGAAGTC----ATTGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-AACA-TGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT--------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taatGGTCATACGTGAG--TACT--CTGTGACGGGCGTGAGGTTGACAA-------CCAATG--AGT-ACGGTCAATCA-GCGCGTGGTATT---TTGAACAC----A-TCAAGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA---AA-CT--A---CCA---TACGC--TCACCA-ATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTAAA------ATGCAATTCGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATACCG-AGTT-CGT-----------------------CCTATA--Tctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TC--TCACCA-ATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------ATGCAATCCAGAGGTC----ATTGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG--------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAtta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------G----GTCCA-TAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : ATGAGGAT----A-GATTTGCTGAAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgTG--AGT-ACGGTAAATCA-GCGCGTGACATC---TTTAACAC----A-CCGAGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C--------------------TCA-G----GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAGAT-----actg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-gc
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC--C-ATGAAGGGCGTGCAGTTGACAG-------CCGTTG--AGC-ACGGTAAATCT-T----TAACACA---GTGA-CAC------T-GAGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TC--T---G----GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAGAT-------GCAATCCGGTGGTC----ATTGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG-AACA-CAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA--------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT--TTGTG---GGCTTGCGTTTGATAT-------GCGATG--AAT-ACTGTCAATAT-CCGCGTGACATC---TTGAT---------T-GAGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TC--TTACAA-ATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATATGTCATT-GGAGGTC----ATAGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG-TACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAGA-G----GCCCA-GAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT------G----GCCCA-GAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTG-----------------T------A-------CC---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCC--ATG----GCCCA-GAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccAGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : AATCGGTTCTGACGACGAG-----TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|8 : TCTGATAGG--TACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC--C-GTGACGGGCGTGCAGTTGACAA-------TCTATA--AGT-ACGGTCAATCT-GCGCGTGACATC---TTGAACAC----AGT-GAAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TT--TCACGA-ATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT------------CTATCTGGAGGTC----ATTGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG-AACA-CATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcTTGACAG-------TC--TGGCAGTTACGTTCAATCTAGCTCGTGACATTATTTTGAACAC----A-T-GACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TA--CCGTAT-ATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT-------------------------ATCTGGATGTC----ATTTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACA-CAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 11 111 1 222 33333 1111 22222222 111 22222222 111111 1111 1 55555555555555555555555555555 33333333333 1111 111111 88888888888888888888888888888888 1111 111111 222222 1111 2222222 4444444444444444444 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 88 999 22 5 1 000 1 6 33333 7 3 1 8888 0 22222222 7 77 5 66 000 22 99999999 666666 5 5 1 0000 888 2 0 66666666666666666666666666666 4 2 5 5 0 5 1 0 66 99999999999 1 1 2222 1 5 666666 0 3 0 4 55555555555555555555555555555555 777 5 2222 1 1 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 0 3 333333 88 9999 7 1111111 1 66 33 9999999999999999999 0 22 7777 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 1 11 1 444 0 2 0 1 1
lowQualScore : .. ... .. . . ... . . ..... . . . .... . ........ . .. . .. ... .. ........ ...... . . . .... ... . . ............................. . . . . . . . . .. ........... . . .... . . ...... . . . . ................................ ... . .... . . .. . ...... . . . . . .. . . . . . . . ...... .. .... . ....... . .. .. ................... . .. .... ......... . . .................................. ... ........................... ...... . . .. . ... . . . . .
lowQualScore : 00 000 00 5 0 000 0 7 33333 3 7 4 0000 8 00000000 8 99 7 77 000 44 66666666 444444 7 7 0 6666 888 0 0 88888888888888888888888888888 5 2 0 0 5 0 0 9 11 88888888888 6 7 1111 6 7 444444 5 1 8 2 66666666666666666666666666666666 444 7 1111 4 0 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 8 2 000000 33 7777 8 7777777 0 77 99 3333333333333333333 4 00 0000 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 88 0 444 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATTTTAATAATTAGATGCA-----A-TCTGGAGGTCATAGGTTAGGTCATTAATTGTGACGAACTTTCAGTTGACAAGTGACAACCAATG--AGT-TCGGCCAATCA-GCGCATGGCACC---GTGAAAACCGTGA-TTGAGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---TG-TCGGTAATTATATATT-CA------TACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAGAT-------GCAATCCGGAAGTC----ATTGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-AACA-TGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT--------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taatGGTCATACGTGAG--TACT--CTGTGACGGGCGTGAGGTTGACAA-------CCAATG--AGT-ACGGTCAATCA-GCGCGTGGTATT---TTGAACAC----A-TCAAGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA---AA-CT--A---CCA---TACGC--TCACCA-ATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTAAA------ATGCAATTCGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATACCG-AGTT-CGT-----------------------CCTATA--Tctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TC--TCACCA-ATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------ATGCAATCCAGAGGTC----ATTGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG--------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAtta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGTAT------------G----GTCCA-TAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : ATGAGGAT----A-GATTTGCTGAAGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgTG--AGT-ACGGTAAATCA-GCGCGTGACATC---TTTAACAC----A-CCGAGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C--------------------TCA-G----GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAGAT-----actg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-gc
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC--C-ATGAAGGGCGTGCAGTTGACAG-------CCGTTG--AGC-ACGGTAAATCT-T----TAACACA---GTGA-CAC------T-GAGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TC--T---G----GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAGAT-------GCAATCCGGTGGTC----ATTGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG-AACA-CAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA--------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT--TTGTG---GGCTTGCGTTTGATAT-------GCGATG--AAT-ACTGTCAATAT-CCGCGTGACATC---TTGAT---------T-GAGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TC--TTACAA-ATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATATGTCATT-GGAGGTC----ATAGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG-TACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGATGGAGA-G----GCCCA-GAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT------G----GCCCA-GAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCA--TGACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTG-----------------T------A-------CC---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCC--ATG----GCCCA-GAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccAGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : AATCGGTTCTGACGACGAG-----TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|8 : TCTGATAGG--TACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC--C-GTGACGGGCGTGCAGTTGACAA-------TCTATA--AGT-ACGGTCAATCT-GCGCGTGACATC---TTGAACAC----AGT-GAAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TT--TCACGA-ATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT------------CTATCTGGAGGTC----ATTGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG-AACA-CATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcTTGACAG-------TC--TGGCAGTTACGTTCAATCTAGCTCGTGACATTATTTTGAACAC----A-T-GACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TA--CCGTAT-ATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT-------------------------ATCTGGATGTC----ATTTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACA-CAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
blockSeqs : TG T TG A A . G C CGCGC A A G CT A A GC T TA ATT AC ATC . C T A CTGC ACG T G CAACTTCACAGTTTTCACGA G A C A C T CA ACATTATATAT A C ATCA A G TGTTAC T A AACACATTTCGTCTGTA T C AAAA T C TC C ATGCTG C G A T CC G A . T T A . AC TCCT A . C AT GA TAGATTTGCTGAAG GA AAAA ACGAGTCTT C C GATTCGCTACAACC GAC ATGGGCCTTCCACCC AATACA C T GC A TGT C C G
blockSeqs : T . . A G C TT G G . . A . AC ACC . . . T . . G G CTACCATACGCTCACCA G G . . . G T AAAAT A C . A . . C A AACACATCAAGTCCGT T . . T G A . . C C . . . . A . . . C . AT TCCT T . A TC GA TGGAGAGGCCCAG GA AAAG ACGAGTCTA C T GGACAGATATGACC . GTC . T G CA C TGT A T A
blockSeqs : C C T G . . A . AC AGT . . . A . . C . CTCTACCATTCTCACCA G G . . . T T AGAT A C . C . . C T AAACACATTTAGTCCG T . . C A A . . G T . . . . T . . . C . AC TCCT T . C GT AG TCCATGGCCCAG CT AAAG . G G GACCAGGTACGACC . GTG . A T AG G TT C T A
blockSeqs : T C A T . . T . AC AT . . . T . . T . CACCATTCTTACAA G G . . . T T AGAT C T . C . . T A TACAACAT T . . C C A . . T T . . . . T . . . . . AC A T . C GT GG TGGCCCAG GA AAAG . T G GACCAGGCACGACC . GTC . C T AC A TG T T A
blockSeqs : G . . . T . C T . . . T . . T . ACACTTTACCGTAT G G . . . A T . T T . A . . T G AGTTCGT A . . T C G . . C A . . . . T . . . . . . . . AC GGTCCAT GA AATA . T G GACC . GTG . A T AG G T T T A
blockSeqs : . . T . T T . . . A . . T . CTCAG A A . . . A C . . . . A . . T G TA A . . T G G . . G A . . . . A . . . GA AAAA . C G GACC . GTG . C G GT T T T T A
blockSeqs : . . . . CTCTG . A . . . A . T . G . G T . . T . CT . . T . GACC . GTG . . G AT T T
blockSeqs : CT . .
blockSeqs : CT . .
blockSeqCons : C*** G******* AT****** ****** AAT******** T** ****** AC TCCT ******* GT TGGCCCAG*********** GTG************************
originalCons : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT--CTGTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAGAT-----ATGCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----A-G----GCCCA-GAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
finalCons : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATTC---GTGACGGGCGTGCGGTTGACAG-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACACAT------GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAAT--------GCAATCCGGAGGTC----ATTGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATAT--AAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGATGGCCCAG-----------AGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAGGTG------------------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT
Alignments
lowQualScore : 11 111 1 222 33333 222222 22222222 111 22222222 111111 1111 1 55555555555555555555555555555 444444444444 1111 111111 88888888888888888888888888888888 1111 111111 222222 1111 2222222 333333333333 333333333 7777777777777777777777777777777777 333333333333333333333333333 111111 222
lowQualScore : 88 999 22 5 1 000 1 6 33333 7 3 1 111111 0 33333333 7 77 5 66 000 22 99999999 666666 5 5 1 0000 888 2 0 1 66666666666666666666666666666 4 2 5 5 0 5 1 0 66 222222222222 1 1 2222 1 5 666666 0 3 0 4 55555555555555555555555555555555 777 5 2222 1 1 66 5 444444 1 1 5 0 5 77 5 1 5 6 8 0 3 333333 88 9999 7 1111111 1 66 3 4 222222222222 0 0 22 7777 222222222 1 2 0000000000000000000000000000000000 888 333333333333333333333333333 444444 3 1 11 1 111 0 2 0 1 1
lowQualScore : .. ... .. . . ... . . ..... . . . ...... . ........ . .. . .. ... .. ........ ...... . . . .... ... . . . ............................. . . . . . . . . .. ............ . . .... . . ...... . . . . ................................ ... . .... . . .. . ...... . . . . . .. . . . . . . . ...... .. .... . ....... . .. . . ............ . . .. .... ......... . . .................................. ... ........................... ...... . . .. . ... . . . . .
lowQualScore : 00 000 00 5 0 000 0 7 33333 3 7 4 666666 8 88888888 8 99 7 77 000 44 66666666 444444 7 7 0 6666 888 0 0 4 88888888888888888888888888888 5 2 0 0 5 0 0 9 11 111111111111 6 7 1111 6 7 444444 5 1 8 2 66666666666666666666666666666666 444 7 1111 4 0 00 0 444444 0 0 0 1 7 99 7 0 7 7 0 8 2 000000 33 7777 8 7777777 0 77 5 0 777777777777 7 4 00 0000 000000000 1 5 4444444444444444444444444444444444 888 666666666666666666666666666 444444 4 0 88 0 222 1 4 7 4 4
consensus : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT---C-GTGACGGGCGTGCGGTTGACAA-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTAG-------A--TGCAATCCGGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGGAGAT----GG-----CCCAGAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
Reference ( family-3399 ) : NNNNNNNNNNNNNNNGGTGAATATAGCTACAGTAATTTCACATCTGACAGGAGNACANNTAGNTAAGGGTNATTGTGATAATTAGATGCA-----AATCGGGAGGTCATAGGTCAGGTCATT---C-GTGACGGGCGTGCGGTTGACAG-------CCGATG--AGT-ACGGTCAATCN-GCGCGTGACATC---TTGAACAC----A-T-GAGT------CT-GT-CCTANATAA----AC---TCGTGTTGGA-AGAA-C---A---CCA---T--TC--TCACGA-ATGTTGCAGTAAT-TACAT-CTGGCAGGATG-ACANTTGATAACGATGATTGTGAC-AATTA--------A--TGCAATCCGGAGGTCAT----TGGTCAGGTCATCTG-TGACGGGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCCGCGCGTGACGTCTTG-AACA-CGT--------T------G-------CCTATA--TAAACT-C----GCGTTGGAAAGAANA-ACTTCACCA-TTCTCACGAT------GGAANCACAACNACCC-ACTCCAAG-GG--AATCT-TTCCCNGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTACGGTGGAACA-------GCTGTATCGTATGAAGAT----GG-----CCCAGAGGGAGTTGGCTNNGACGGAGAGAAAGTTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACC----------GGGCAACG---GAG-----------GT-G------------TTCCGG------TATAGCTACCGCCTACAGATGGACATCATTGAAGGCNTANAGAANGTGTACCATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTCGGGTACGTTCCAGTCGGCTCTGACGACGAGT
gi|1 : TAATTTTAATAATTAGATGCA-----A-TCTGGAGGTCATAGGTTAGGTCATTAATT-GTGACGAACTTTCAGTTGACAAGTGACAACCAATG--AGT-TCGGCCAATCA-GCGCATGGCACC---GTGAAAACCGTGA-TTGAGTTTCACTCT-GT-GCTATATAA----AT---TTGTGGTGGA-AATA-----A---CTA---TG-TCGGTAATTATATATT-CA------TACAT-ATGGCAGGATG-ACAATTGATCACAATGATTGTGAC-AATGAG-------A--TGCAATCCGGAAGTCAT----TGGTCAGGTCTTCTA-TGTCAAGCGTGC------AGTTGACAACCAATGAGTACGGTCAATCAGTGCGACACATCTTG-AACA-TGT--------T------GAGTCTGCCCTATATTTAAACC-C----GTGGTGACAAGAACA-ACTTCACCA-TTCTCACGAT------GGAAGCACAGCCATCC-ACTGGAAA-CG--AATCT-TTCACAGAAATGTCC-ACCACCG-ATG-ATACATATGTCATCGTTATGGAA---GACG------CGGAGGAACAGGGGCAGGTTG-ACCGTTTGAAGAT------------------GGAGTTGGTTCTGATGGATAGAAAGCTGCA---------CCGGGCCTGTGAACAAGTTGATTTCCTGAGCTATAGGTTGGGGAAGGTGCAGGAGAGATACG----------ACC----------GGGCAAAG---GAGAGGAGCCACCCGTCG------------TTCCTG------TTTAGTTACCGCCTCCAGATGTCTGTCATCGAACGAGTCAGGAGGGTGTACCA-G-GACTACGCCCAGATCCAGGCCGAGAA--------------GACGAAAAATATTCGGGGAAGTTCTGGTCGACTCAGACTACGA
gi|10 : taatGGTCATACGTGAG--TACT---CTGTGACGGGCGTGAGGTTGACAA-------CCAATG--AGT-ACGGTCAATCA-GCGCGTGGTATT---TTGAACAC----A-TCAAGT------TT-GT-CCTAACTAA----AT---TTGAGTTGGA-A--A-CT--A---CCA---TACGC--TCACCA-ATGTTGCAATAAT-TACAT-CTGGCAGAATG-GCATTTGATAACGATGATCGTGAT-AGTTA--------AAATGCAATTCGCAAGTCATCAATTGGTCAGGCCATCTA-TGACAGGCGTGC------AGTTGTCAACCCATGAGTACGGTCTATCTGCGCGTGACATACCG-AGTT-CGT-----------------------CCTATA--Tctttgaattgtaaacctgtggactaggccagataaggacacctccccctcccggctgatatgcacctattcgcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncattaacgatttgagattctatcatttttatggccatttacttcaggcaaagtcagaggaagaaaaatggatcgtttgatttcatactaagtactttaatgttggacctacttcaaagtcatacg
gi|11 : gtgcctgtgataacactgacttgaaacacattgATAA----ACACGTCGCGTGGAA-AGAA-CTCTA---CCA---T--TC--TCACCA-ATGTTGCAGTGAT-TACAT-ATGGTAGGTTG-GCAGTTGATAACGATGAACGTGACAAATTAG-------A--TGCAATCCAGAGGTCAT----TGGTCAGGTCATCTG-TAACGGGAGAGC------AGTTGACCACCA----------CCAATGCGTGCGTG--------------------------------G-------CCTATA--TAAACA-CAAAAATGTTGAAAAGAACA-ATTTCGCCA-TTCTCACGAT------GGAACCGCAACGAATC-ACTCCAAtta
gi|13 : AACCACTG-AC-CCAGA-GGCCAAG-T-TTCCCAGAAAA-TCCGACCAACA-ATA-ATGCAGATGAC------ATGGAAACCGACGTCCTTATAGAGGAACA-------ACTATATCGT------AT----GG-----TCCATAAAGAGTTAGCTGAGACCGAGAGAAAATTACAACGAGTCTTCAGGGCCTGCGAACAGATGACCt
gi|14 : AGAGGGAGTTGGCCGAGACAGATAGAAAGTTCCG---------GCGGGCTTGCGAACAGATAGATCTTCTGAATCGCAAGTTCAGGGACGTGCA----------GATTCGCTACAACC----------GGGCCACAGACGAG-----------GT-C------------TTCCGA------TACACCTACCGTCTTCA
gi|16 : atgtgatgaggatagatttgctgaTG--AGT-ACGGTAAATCA-GCGCGTGACATC---TTTAACAC----A-CCGAGT------TT-GA-C--ATATAA----AC---TCGTATCGGAGAGAA-C--------------------TCA-G----GTTGCAGTAAT-TACAT-CTGGCAGGATG-ACATTTGATCACGGTGACTGTGAT-AATTAG-------A--TGCactg
gi|18 : AGAGAAGA-ACGTCACCA-TTCTCACGAT------GGAACCACAACTATCC-ACTCCTAA-AG--AACCT-TTCCCAGGAGA-GTCGACCGACA-
gi|19 : ACCGCCAACAAATGGATATCGTTGAAGACTTGCAAAAAGTGTTCC-T-TGACTACGCCATAACCCAGGCGGAg
gi|2 : tgCAGGTCATC---C-ATGAAGGGCGTGCAGTTGACAG-------CCGTTG--AGC-ACGGTAAATCT-T----TAACACA---GTGA-CAC------T-GAGT------TT-GT-CCTGAATAA----GC---TCGTGTTGGAGAGAA-C----------------TC--T---G----GTTGCAGTAAT-TACAT-TTGGCAGGATG-ACATTTGATATCGGTGACTGTGAT-AATTAG-------A--TGCAATCCGGTGGTCAT----TGATCAAGCCCTCGG-TGACGGGCGTGC------AGTTGACAACCAAACAGTATGATCAATCCGCGCGTGACATCTTG-AACA-CAT--------C------AAGTCCGTCCTATA--TAAACT-C----GTGTTGGAAAGAGAA-ACTTCACCA-TTCTCACGAT------GGAAGAACAGCTACTC-ACGTCAAactagaa
gi|2 : AATCGACGA---TGCGGTGGAACA-------GATTCACTTTATGAAGA------------------AGGAGTTGACTCTAACGGAGGAAAAGTTCCG---------GAGAGCCTGCGAGCAGATTGTCTACCTGAACTGCAGGCTTCGGGAGGTGCAGGACAGATATG----------ACC----------GGGCCAAG---GAG-----------AT-GGGCCTTCCACCCTTCCAG------TACAGTTACTGCCTCCAGATGGCCGTTATCGAAAGAGTCAAGACCATGTACCA--TGACTACGCCGAGATCCAGGCTGAAAGGATGAGAAACCTGGAGCTTGAAATATACGGGGAAGTTCAAGTCGACtcgacgatgcggtggaacagattcactttatgaagaaggagttgactctaacggaggaaaagttccggagagcctgcgagcagattgtctacctgaactgcaggcttcgggaggtgcaggacagatatgaccgggccaaggagatgggccttccacccttccagtacagttactgcctccagatggccgttatcgaaagagtcaagaccatgtaccatgactacgccgagatccaggctgaaaggatgagaaacctggagcttgaaatatacggggaagttcaagtcgacgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|3 : caggtcatccatgaagggcgtgcagttgacagccgttgagcacggtaaatctttaacacagtgacactgagtttgtcctgaataagctcgtgttggagagaactctggttgcagtaattacatttggcaggatgacatttgatatcggtgactgtgataattagatgcaatccggtggtcattgatcaagccctcggtgacgggcgtgcagttgacaaccaaacagtatgatcaatccgcgcgtgacatcttgaacacatcaagtccgtcctatataaactcgtgttggaaagagaaacttcaccattctcacgatggaagaacagctactcacgtcGGTGAATATAGCTACAGTAATTTCACATC--ACAAGAGGATAATT-GCTAAGGGTGATTGTGATAATTAGATGCACGCGCAATCAGGAAGTCATAGGTCAGGTCATT---T--TG-TGGGCTTGCGTTTGATAT-------GCGATG--AAT-ACTGTCAATAT-CCGCGTGACATC---TTGAT---------T-GAGT------TT-GT-CCTATATAA----AC---TCGTGTTAGA-ACAA-C---A---CCA---T--TC--TTACAA-ATTCTGCAGTACT-GACAT-CTGGCAGGAGG-ACGATTGATAGCAATTATTGTGAT-AATTACATTATATA--TGTCATT-GGAGGTCAT----AGGTCAGATCCTCTG-TGGCACGCGAGC------AGTCAACAACCAATGAGTACGGTCAATCTGCGCGAGACTTCTTG-TACAACAT-----------------------CCTATA--TAAACT-C----GCGTTGGAAAGAGCA-GCTTCACCT-TTCTCACGAT------GGAATCACAACAACTC-ACTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGACGTCCTTATGGTGGAACA-------GCTGTATCGTATAGAGAT----GGAGAGGCCCAGAGGGAGTTAGCCGAGACAGAGAAAAAGTTACA---------TAGGCCCTGCGAACAGATAATCCTCCTTGGCTGGAAGTTGAGGGAGGTGCA----------G----------ACC----------AGGCAACG---AAT-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGATAAATTGCAAGGTATCCAGCTAGAAATAGTTGGGTACATTCCAATCGGTTCTGACGACGAGTgagtatgaacctgtatagactagaccaaagaaggaaatctaccccagccgacacctacaatgtaatctccagagcccgcccgggcagacagacaaaacttgtcctnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccaataacgattgagattttatcaatttcttatt
gi|4 : ttcacgaggaaacaaCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACATATGTATACAAA---A------ATGGAA-----------TACGG------------------------ATGGAAAT----GG-----CCCAGAAAGAGTTAGCTGAGACAGAGAAAATATTACAACGAGTCTACAAGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATT-AGGGAGGTGCA----------G----------ACCAGGTACGACCGGGCAACG---GAT-----------GT-C------------TTCTGG------TATAACCACCGCCTACAAATGGACATCATTGAAAACTTACAAAAAGTGTACCATG--ACTACGCAGTAACACAGACGGAGAAATTACAAGATCTGCAGCTACAGATCTTTGGGTACATTCCAGTCGGCTCTGATGTAGAGT
gi|5 : tTATGGTCAATCTGCGAGAGACATCTTG-----------------T------A-------CC---------ACT-C----GCATTAGAAAGAACA-GCTTCACCA-TTCTCAAGAT------GGAACCACAACAACCC-ATTCCAAG-GG--AATCT-TTCCCTGGAAT-TCCGACCAACA-ATA-ATGCAGATGCC------ATGGAAACCGAAGTCCTTATGGTGGAACA-------GCTGTATCGTATACGGATCCATGG-----CCCAGAGGGAGTTAGCTGAGACAGAGAAAAAATTACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAAATTGAGGGAGGTGCA----------G----------ACC----------AGGCAATG---AAG-----------GT-G------------TTCCGG------TATAGATACCACCTAAAAATGGACATCATTAAAGGCTTAGAGAAGGTGTATTATGTGACTACGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTCCAGTCGGCTCTGATGAAGAGTacgaacccacaagaatataggcattgccccgggacgatgttccccccagtctccacagcacgcctcgggcacagagacaaaccgcccccaggcgatgtcaaaaccaacggcccttttcagggccatgccaatatttcgagagaaaaaaaaaacacctctcaataacgaattgagattctctcattttcttatgatcattttaagtttgatcatctactttagtgaaaagaaa
gi|5 : AGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAacacaaggcccgcgaacagata
gi|6 : tatggtcaatctgcgagagacatcttgtaccactcgcattagaaagaacagcttcaccattctcaagatggaaccacaacaacccattccaagggaatctttccctggaattccgaccaacaataatgcagatgccatggaaaccgaagtccttatggtggaacagctgtatcgtatacggatccatggcccagagggagttagctgagacagagaaaaaattacacagggcctgcgaacagatagccctccttggctgtaaattgagggaggtgcagaccaggcaatgaaggtgttccggtatagataccacctaaaaatggacatcattaaaggcttagagaaggtgtattatgtgactacgccgtaacccaggcggagaaattgcaaggtttccagctagaaatatttgggtacattccAGTCGGCTCTGATGAAGAG-----TACA---------CAAGGCCCGCGAACAGATAGCCCTCTTTGGCTGCAAGTTGAGGGAGGTGCA----------G----------ACCAGGCACGACCGGGCAACG---GAG-----------GT-G------------TTCCGGAATACATGTAGCTACCGCCTAAAGATGAACATAATTAAAGGCGTGTAAAATGAGTACCATG--ACTTCGCCGTAACCCAGGTGGAGAAATTGCAAGGTTTCCAGATAGGAATATTTGGGTACATTCCAGTCGGCTCTGATGACGAGT
gi|7 : AATCGGTTCTGACGACGAG-----TACA---------CAGGGCCTGCGAACAGATAGCCCTCCTTGGCTGTAACTTGAGGAAGGTGCA----------G----------ACC----------AGGCAACG---GAG-----------GT-G------------TT------------------CCACCTACAGATGGACATAATTAAAGGCGTATAAAATATGTACAA--TGACTTTGCCGTAACCCAGGCGGAGAAATTGCAAGGTTTCCAGCTAGAAATATTTGGGTACATTTCAGTCGGCTCTGACGACGAGTacgaacatgttccaccagtctccacagcacgcctcgggcaaacagacaaaccgtccctaggcgatgtcaaaaccaacggcccttttcaggaccatgtcaatatttcgaaaagacacatcaaaaacgaatcgatattctatcattttctaatggggttttttatgctcgattatttgctttagtcaaaagaaataaaagcaaaatggatc
gi|8 : TCTGATAGG--TACATGTAGATAA---TTATTGTGACGATTAGATG-A-----AATCGGGAGGTCATAGGTTAGGTCATC---C-GTGACGGGCGTGCAGTTGACAA-------TCTATA--AGT-ACGGTCAATCT-GCGCGTGACATC---TTGAACAC----AGT-GAAT------CT-GT-CCTCTATAA----AC---TCGTGGTGGA-AGAA-C---AACTTCACAGT--TT--TCACGA-ATGATATAATAAT-GATAT-CTGGCAGGGAG-ATAATGAACAACGATCATT----C-AAGT--------------CTATCTGGAGGTCAT----TGATCAGGTTATCTG-TGACGGGCGTGC------TGTTGACAACGAATGAGTTCGATCAATATGCGCATGACGTCTTG-AACA-CATTTCGTCTGT------A-------CCTATA--AAAACC-C----GTGTTGGAGAGAAGA-TCTTCACCA-TTCTCACGAT------Gacgaacctacagactaggccttccccaggacgatgttccctcaccctccatagcacgtctagggcaaagagacaaaccgtccctagccgatgtcaaaaccaacggctcttttcaggaccattacaatatttcgaaaagacacctcgataacgaatcgagattctatcattttctaatgtgttttttatgctcgattatttactttagtcaaatgaaatcaaagcaaaatagatc
gi|9 : ttacaagataacaaaataggaatgaagcTTGACAG-------TC--TGGCAGTTACGTTCAATCTAGCTCGTGACATTATTTTGAACAC----A-T-GACT------CCCGTTCCTAAATAACTGCAC---TGTTGT-GAA-AGAAAC---A---CT----T--TA--CCGTAT-ATATT--AATAATCTACATACTGGCAGGGAGCATAATGAATAACGATCAT---------------------------ATCTGGATGTCAT----TTGTCAGGTCATCTGGTGACGGGCGTGCTGTTACAGTTGACAACGAATGAGTTCGATCAAACTGCGCATGACGTCTTGAAACA-CAT--------TTAGTCCG-------TCTATA--AAAAATCC----GTGCTGGAGAGAAGATCCTTCACCACTTCTCACGATATGCTGGGAAGCACAACTCTCCAACTCCCCGTAG--AATCTGTCCCCAGGAAT-GTCAAC
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|12 ): AAGCAGACAGAAAATTATCTTTAGAGGATGGCGGTTTCAGAACCCAACGGCCCTTTTCAGGGCCATAAAACTATTTCGAAAAGACGCCTTCATTTTAACGAATTGAAATTCTATCATTTTTTTTAAAGTTCGTTTTAGATTCAGTCATAGTAAGAGAGAGAAAAATGGATCG
Unaligned ( gi|15 ): CATTAACGAATTTGACGATTCTGTCCGTTTCCTGATGTTTCAATTATGTTTTTAATTAGTCATTTGATTCAGTCAAAGAAAGAGAAAGAAAAACGGATGGCTTTGATAAAAATTACGGCCCACTTTGAACAAAGTCATAC
Unaligned ( gi|17 ): GTCGACCCTGTCGAAGAGTATGAAAAACGAGGTCAGAAAACCTTCCAAAGTCACCAGATTCCACCTTGGACAAACAGGCAAGCCGTCCTTAGGCGGT