lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 2 1 1 1 11 555 33333333 1 1 2 1 1 1 55 222 55555555555 1 1 11 33 111 22 11 11 11111 7777777777777777 1 1 333333333333333333333333333333333333333333333333333333333333333333 11
lowQualScore : 3 3 3 3 3 77 999 3 6666 55 33 55 000 999999 4 44 3 4 5 5 5 5 0 0 0 0 3 2 3 0 33 222 6 1 55 2 2 66666666 0 0 1 8 5 3 3 3 5 3 55 6 4 2 000 88888888888 5 0 55 00 222 33 7 33 33 8 22 77777 0 1111111111111111 2 0 3 0 3 3 999999999999999999999999999999999999999999999999999999999999999999 66 5 5 0 0 11 5 66 5 5 66 5 5 5
lowQualScore : . . . . . .. ... . .... .. .. .. ... ...... . .. . . . . . . . . . . . . . . .. ... . . .. . . ........ . . . . . . . . . . .. . . . ... ........... . . .. .. ... .. . .. .. . .. ..... . ................ . . . . . . .................................................................. .. . . . . .. . .. . . .. . . .
lowQualScore : 6 6 3 1 1 33 111 6 8888 00 66 00 000 555555 0 66 3 0 7 7 7 7 0 0 0 0 2 5 2 8 88 000 0 2 00 5 5 22222222 0 0 6 0 0 2 2 3 0 3 00 5 0 5 222 55555555555 0 0 88 00 222 88 0 88 88 0 22 11111 8 0000000000000000 5 0 2 0 2 2 888888888888888888888888888888888888888888888888888888888888888888 99 0 0 1 1 99 0 99 0 0 99 0 7 7
consensus : TAGA-CT-GGC-CT-ACCGT-CTGAT--ATCGT--AT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CT---ACCGCCA-TGTA--A-G-CCAGGAA-TT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACNGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--CTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC----------CTTT--AATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAAA-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
Reference ( gi|2 ) : TAGA-CT-GGC-TT-ACCGT-CTGAT--ATCGT--AT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CT---ACCGCCA-TGTA--A-G-CCAGGAA-TT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCTTAAATGGGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGATGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAACCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATTGAACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATCCTGGACTGGCTT--GACACAG---T-------CATGCAGCACTTT-AAAGTATTATGCAGAGTTAGCCTCAGCATCTAGTAAATCC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC----------CTTTTAAATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGCAATTC-------CAAA-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|1 : TAGA-CT-GGCCTT-ACCGT-CTGATTTATCGT--AT-A-TTAACG--ACAAA--CAGA--CAGT--GTGAGCT---ACCGCCA-TGTA--AAG-CCAGGAA-TTTCCTGG-CTTTGACTGTTGCAGCCATC-TGTAAGAGATTTTTC-TACATTAAATATGGGCAATAACA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAAATTAGATTGCAAGTTGGGACTGGCAATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-GAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCCATGTCAGGATCCTGGACTGGCTT---ACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAACTTTTTTTCCATAA--GTTATGTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTCGAGCGATCGATCCTTATATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------TTTGAATTTTGATAGTGCAATTT-------CAAA-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTAGTCA-CCTGTCT
gi|3 : TAGAACT-GGC-CTGACCGT-CTGAT--ATCGT--ATTA-T--ACGGGACAAAAACAGAGACAG---TT-A-CT---ACCGCCAGTGTAGAA-G-CCAGGAA-TT-CCTGGTCTT-GACTGTTGCCGCCATCATGTA-GAGATTTTTCGTACATTAAACATGGGCAATAATATAGGC---AATGAGTCAGAAGC-CAAG-TGGTGCTGCCAGTTGAAAAC-AAAAAATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-AT-TATGTATTTTATGTAAA-TGAATA-GTCAATCCCACATAAACAAAAGTTCATGTAACGAAAA
gi|6 : gTAGA-CT-GAC-CT-ACCGT-CTGAT--ATCGT--AT-ATT--ACG---CAAA--CAGA--CAG---GTGA-CT---ACCGCCA-TGT------------AA-TT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACA-TAAACAT-GGCAAT------GGCT--AATGAGCCAACAG-GCAAGGT-GTGCTG--------AAACAAAAA-ATCAGGTCATGCACAGATTAGATTGCAAG-TCGGACTGGCGATTTCAACGAATTAATGTATTTTCTGTAAATTGGATATGagatacagtgtatttaatacatcagaatcgtatgtacctacgaccaatgtcaggatgctggacagggtgacacagttctcatgcagcacgttaaaagtattatgcagatttacacgcagcatctagtaaattcaaactttttcccataaaccttgttggtagccacaaagattgtgacgtgtcattaagtgcacctttaatgtttttccttgcaacagtttcaaataagtagagttaatttctatctaatttgaaatttcaaatcaatgttggctttccccgtgcgcttgttttatctacgtcaggcgatttgttatgaacagccaatgaagccgcaaggtcaagtagagggcctccgttacattactggtacctgtct
gi|10 : TAGA-CT-GGC-TT-GCCGT-CTGAT--AT
gi|14 : tacacttgttatctacgtcagcgtttataacagccaatgagtctcagtcgatatagggctctttaaataTAGA-CT-GGC-CT-ACCGT-CTGAT--ATTGT--AT-A-T--ACG--ACAAAAGCACA--AAGATTGTGA-C-----GTGCCA-T-TA--A-G-gacttaatatagatc
gi|19 : TAGA-CT-GGC-CT-AC-GT-CTGAT--ATCGT--AT-A-T--ACG--ACA
gi|17 : TAGA-CT-GGC-CT-ACCGT-CTGAT--ATCGT--A
gi|4 : AGA-CT-GGC-CT-ACCGT-CTGAT--ATCGT--AT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CT---ACCGCCA-TGTA--A-G-CCAGGAA-TT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGACAACAGCGCAAGGTGGTGCTA--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTTGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAATTTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCATATGTACCTACGACCAATGTCAGGATTCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAG--ATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAT-TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTGTGCTGCTC----------CTTT--AATGCTTTTT-CC-TGCAAACAGTTTCAAACAaacgcaatgtagat
gi|5 : GA-TT-GGC-TT-ACCCT-CTTAT--ATCGC--AC-A-----CG--ATAAA--CAGA--CAG---GTGA-CC---A--GTAA-TGTA--A-
gi|13 : cagcatctcgtaaattaaactattcccataacctgttggtagcacaacgattctgtcattatcaagtgctgttaatgcttttttccttgcgacggcttcagataagtaagacttaattttctatccaaatagatttttgatagcgtaatttttgacagcaaagagataaccgttcatattgttttggcttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagcctcagtcggtagagggctctGA-CTTGGC-TT-GCCGTGCTGAT--ATCG----C-A-T--ACG--ATAAA--CATA--TA----ACGA--T---ATCAGCA-CGT---A-G-CCaa
gi|7 : cattagttggtagacg-CT-GGC-TT-GCCGT-CTGAT--ATCG----C-A-C--ACG--ATAAA--CAGA--GAG---GTGA-T-----CCGTAA-TGTA--A-
gi|21 : agtaagagtttattttctatccaagttggttttccccgtgcacttgttatctacgtcagcgtttgtttaaaatgccaatgagccgcagtcggtagagggctctGC-TT-GCCGT-CTGAT--ATCG----C-A-C--ACG--ATAAA--C
gi|1 : g-ACTGT-CTGTTT-GTCGTTAAT-A-T--ACG--ATAAAT-CAGA--C-G---GTAA-
gi|20 : tagactggccAGA--CAAA--CAG---GTGA-CT---ACCGCCA-TGTA--A-G-CCAgtgagctaccgccatgtaaagccaggaatttcctggctttgactgttgcagccatctgtaagagatttttctacattaaatatgggcaataacaggctaatgagtcaacagcgcaaggtggtgctgaaacaaaaatcgggtcatgcacaaattagattgcaagttgggactggcaatttaaacgatgtatgtattttctgtaaattggatatgtcaatcccaataaacaaaagctcatgaacgaaaatgtgtagtttcagtcactcgatcttttaaattactggtctggtgccaggtcatgcggcatttcatttagtacagtagaatcgtatgtacctacgacccatgtcaggatcctggactggcttacacagtcatgcagcacgttaaagtattatgcagagttacactcagcatctagtaaattcaaactttttttccataagttatgttggtagcacaaagattgtgacgtgtcatcaaaaagttaagtgctcgagcgatcgatccttatatgctttttccttgcaacagtttcaaataagtaagagttaattttctatctaatttgaattttgatagtgcaatttcaaatgttttggctttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagccgcagtcagtagagggctctttacattactagtcacctgtct
gi|1 : A--CAG---ATGG-CTGCAACAGTCA----A--A-G-CCAGGAAATT-CCTGG-CTT-TAC
gi|4 : tagactggccttaccgtctgatttatcgtatattaacgacaaacagacagtgtgagctaccgccatA--A-G-CCAGGAA-TT-CCTGG-CTT-aagagatttttctacattaaatatgggcaataacaggctaatgagtcaacagcgcaaggtggtgctgaaacaaaaatcgggtcatgcacaaattagattgcaagttgggactggcaatttaaacgatgtatgtattttctgtaaattggatatgtcaatcccaataaacaaaagctcatgaacgaaaatgtgtagtttcagtcactcgatcttttaaattactggtctggtgccaggtcatgcggcatttcatttagtacagtagaatcgtatgtacctacgacccatgtcaggatcctggactggcttacacagtcatgcagcacgttaaagtattatgcagagttacactcagcatctagtaaattcaaactttttttccataagttatgttggtagcacaaagattgtgacgtgtcatcaaaaagttaagtgctcgagcgatcgatccttatatgctttttccttgcaacagtttcaaataagtaagagttaattttctatctaatttgaattttgatagtgcaatttcaaatgttttggctttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagccgcagtcagtagagggctctttacattactagtcacctgtct
gi|3 : agactggcctaccgtctgatatcgtatatacgacaaacagacaggtgactaccgccatgtA--A-GACCAGGAA-TT-CCTGG-CTT-gactgttgcgccatctgtagagatttttctacattaaacatgggcaataataggctaatgagacaacagcgcaaggtggtgctaaaacaaaaatcgggtcatgcacagattagattgcaagttgggactggcgatttaaacgatgtatgtattttctgtaatttggatatgtcaatcccaataaacaaaagctcattaacgaaaatgtgtagtttcagtcactcgatcttttaaattactggtctggtgccaggtcatgcggcatttcatttagtacagtagaatcatatgtacctacgaccaatgtcaggattctggactggcttgacacagtcatgcagcacgttaagattatgcagagttacactcagcatctagtaaattcaattttttttccataacctgttggtagcacaaagattgtgacgtgtcatcaaaaagtgtgctgctcctttaatgctttttcctgcaaacagtttcaaaca
gi|15 : gtagaactggcctgaccgtctgatatcgtattatacgggacaaaaacagagacagttactaccgccagtgtagGCACAGATTAGATTGCAAGTCGGGACTGG-GATTTAAACG-ATGTATGTATTTTCTGTAAAgactgttgccgccatcatgtagagatttttcgtacattaaacatgggcaataatataggcaatgagtcagaagccaagtggtgctgccagttgaaaacaaaaaatcgggtcatgcacagattagattgcaagtcgggactggcgatttaaacgattatgtattttatgtaaatgaatagtcaatcccacataaacaaaagttcatgtaacgaaaaagatacagtgtatttaatacatcagaatcgtatgtacctacgaccaatgtcaggatgctggacagggtgacacagttctcatgcagcacgttaaaagtattatgcagatttacacgcagcatctagtaaattcaaactttttcccataaaccttgttggtagccacaaagattgtgacgtgtcattaagtgcacctttaatgtttttccttgcaacagtttcaaataagtagagttaatttctatctaatttgaaatttcaaatcaatgttggctttccccgtgcgcttgttttatctacgtcaggcgatttgttatgaacagccaatgaagccgcaaggtcaagtagagggcctccgttacattactggtacctgtct
gi|3 : ATTTAATACATCAGAATCGTATGTACCTACGACCAATGTCAGGATGCTGGACAGG-GT--GACACAGTTCT-------CATGCAGCACGTTAAAAGTATTATGCAGATTTACACGCAGCATCTAGTAAATTCAAA--CTTTTTCCCATAAACCTT--GTTGGTAGCCACAAAGATTGTGACGTGTCA--------TTAAGTGCAC----------CTTT--AATG-TTTTT-CCTTGC-AACAGTTTCAAATAAGT-AGAGTTAA-TTTCTATCTAA------------T-------------TTGAAATTT-------CAAA-----------------TCAATGTTGGCTTTCCCCGTGCGCTTGTTTTATCTACGTCAGGCGATTTG-TTATG-AACAGCCAATGAAGCCGCAAGGTCAAGTAGAGGGCC--TCCGTTACATT-ACTGGT-A-CCTGTCT
gi|11 : gtagaactggcctgaccgtctgatatcgtattatacgggacaaaaacagagacagttactaccgccagtgtagaagccaggaattcctggtcttgactgttgccgccatcatgtagagatttttcgtacattaaacatgggcaataatataggcaatgagtcagaagccaagtggtgctgccagttgaaaacaaaaaatcgggtcatgcacagattagattgcaagtcgggactggcgatttaaacgattatgtattttatgtaaatgaatagtcaatcccacataaacaaaagttcatgtaacgaaaaagatacagtgtCCAATGTCAGGATGTTGGACATGCTTTCAACACAGAAATGTTCAAGCATACAGCACGTT-AAAA---TATGCAGAGTT
gi|5 : CAGCATCTCGTAAATTA-AA--CTATTC-CCATAA--CCT--GTTGGTAG-CACAACGATT----C-TGTCATTA-----TCAAGTGCTG----------TT----AATGCTTTTTTCCTTGC-GACGGCTTCAGATAAGTAAGACTTAATTTTCTATCCAAATAGATTTTTGAT------------AGCGTAATTTTTGACAGCAAAGAGATAACCGTTCATATT--GTTTTGGCTT-CCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCTCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCTctagtacattc
gi|14 : AG-CACAAAGATTGTGACGTGCCATTAAgtttatcgtgtgcgatataagagggtaagccaatcaa
gi|7 : tagactggcctaccgtctgatattgtatatacgacaaaAGTAAGAGTTTATTTTCTATCCAA------------------------------------------------------------------GTT--GGTTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAA--AAT-GCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACGGATCA-CCTCTCTg
gi|12 : TTTCTATCTAA------------T-------------TTGAAATTT-------CAAATCAAA------------T--GTTTTGGCTTTCCCCGTGCGCTTG--TTATCTACGTCA-GCG-TTTGTTTAT--Agtttatcgtgtgcgatatcagacggcaagccag
gi|9 : ------------AGTTTAATTT-------TGAT-----------------T--GTTTTGGCTTTTCCCGTGCACTTG--TTAACTACGTCA-GCG-TTTGTT-------CAGCCGATG-AGCCGCA--TTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|8 : ctaTTT-------CAAA-----------------T--GTTTTGGCTTTCCCAGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTATACAACAG-CAATG-AGCTGCA--GTC-AGTAGA-GG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|10 : taatttgaatTACACTTG--TTATCTACGTCA-GCG-TTT----AT--AACAGCCAATG-AGTCTCA--GTC-GATATAGGG-C--TCT-TTAAATg
gi|16 : CAATG-AGACA-A--GTC-AATAGAGGG-CTATCT-TTACATTAACTGGTCAGCTTGTCaatatcagacggcaagccagtctagacttaatatagatc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): GGTTTATCGCGGCGGATTCAGACGGCAAAGCCAGTCA
Alignments
lowQualScore : 11 111 1 11 111 22222222 1 1 11 111 44444444444 11 11 11 33333333333 11 88888888888888888888888888888888888888888888888888888888888888888888888 11
lowQualScore : 3 3 6 3 44 4 3 6666 55 00 55 111 4 2 4 666 4 8 8 8 6 8 8 8 0 0 11 111 99999999 8 8 6 2 0 0 0 0 88 1 1 444 55555555555 8 88 0 0 0 6 99 3 11 11 8 0 7777 88888888888 11 8 8 0 8 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 66 4 4 00 4 66 4 4 66 4 5 5
lowQualScore : . . . . .. . . .... .. .. .. ... . . . ... . . . . . . . . . . .. ... ........ . . . . . . . . .. . . ... ........... . .. . . . . .. . .. .. . . .... ........... .. . . . . . . ....................................................................... .. . . .. . .. . . .. . . .
lowQualScore : 3 3 2 1 22 5 6 8888 00 00 55 000 0 3 0 333 0 0 0 0 0 0 0 0 8 8 00 888 00000000 0 0 7 5 8 8 0 0 33 0 0 222 00000000000 0 88 8 6 6 7 00 8 00 00 0 8 4444 00000000000 00 0 0 8 0 8 8 66666666666666666666666666666666666666666666666666666666666666666666666 11 4 4 66 4 11 4 4 11 4 0 0
consensus : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
Reference ( family-3396 ) : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACNGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--CTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|1 : TAGA-CT-GGCCTTACCGT-CTGATTTATCGTAT-A-TTAACG--ACAAA--CAGA--CAGT--GTGAGCTACCGCCA-TGTA--AAGCCAGGAATTTCCTGG-CTTTGACTGTTGCAGCCATC-TGTAAGAGATTTTTC-TACATTAAATATGGGCAATAACA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAAATTAGATTGCAAGTTGGGACTGGCAATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-GAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCCATGTCAGGATCCTGGACTGGCTT---ACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAACTTTTTTTCCATAA--GTTATGTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTCGAGCGATCGATCCTT--ATATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------TTTGAATTTTGATAGTGCAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTAGTCA-CCTGTCT
gi|10 : TACACTTG--TTATCTACGTCA-GCG-TTT----AT--AACAGCCAATG-AGTCTCA--GTC-GATATAGGG-C--TCT-TTAAAT
gi|10 : TAGA-CT-GGCTT-GCCGT-CTGAT--ATaatatcagacggcaagccagtctagacttaatatagatc
gi|11 : tacacttgttatctacgtcagcgtttataacagccaatgagtctcagtcgatatagggctctttaaataCCAATGTCAGGATGTTGGACATGCTTTCAACACAGAAATGTTCAAGCATACAGCACGTT-AAAA---TATGCAGAGT-----------TCTAGTACATTC-gacttaatatagatc
gi|12 : TTTCTATCTAA------------T-------------TTGAAATTT-------CAAATCAAA-----------------T--GTTTTGGCTTTCCCCGTGCGCTTG--TTATCTACGTCA-GCG-TTTGTTTAT--A
gi|13 : GA-CTTGGCTT-GCCGTGCTGAT--ATCG--C-A-T--ACG--ATAAA--CATA--TA----ACGA--TATCAGCA-CGT---A-GCC
gi|14 : cattagttggtagacgTAGA-CT-GGCCT-ACCGT-CTGAT--ATTGTAT-A-T--ACG--ACAAAAGCACA--AAGATTGTGA-C--GTGCCA-T-TA--A-G
gi|15 : GCACAGATTAGATTGCAAGTCGGGACTGG-GATTTAAACG-ATGTATGTATTTTCTGTAAA
gi|16 : CAATG-AGACA-A--GTC-AATAGAGGG-CTATCT-TTACATTAACTGGTCAGCTTGTC
gi|17 : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTA
gi|19 : TAGA-CT-GGCCT-AC-GT-CTGAT--ATCGTAT-A-T--ACG--ACAaacgcaatgtagat
gi|2 : TAGA-CT-GGCTT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCTTAAATGGGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGATGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAACCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATTGAACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATCCTGGACTGGCTT--GACACAG---T-------CATGCAGCACTTT-AAAGTATTATGCAGAGTTAGCCTCAGCATCTAGTAAATCC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTTTAA-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGCAATTC-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|20 : AGA--CAAA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCA
gi|21 : GCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--C
gi|3 : gTAGAACT-GGCCTGACCGT-CTGAT--ATCGTATTA-T--ACGGGACAAAAACAGAGACAG---TT-A-CTACCGCCAGTGTAGAA-GCCAGGAATT-CCTGGTCTT-GACTGTTGCCGCCATCATGTA-GAGATTTTTCGTACATTAAACATGGGCAATAATATAGGC---AATGAGTCAGAAGC-CAAG-TGGTGCTGCCAGTTGAAAAC-AAAAAATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-AT-TATGTATTTTATGTAAA-TGAATA-GTCAATCCCACATAAACAAAAGTTCATGTAACGAAAA
gi|3 : gATTTAATACATCAGAATCGTATGTACCTACGACCAATGTCAGGATGCTGGACAGG-GT--GACACAGTTCT-------CATGCAGCACGTTAAAAGTATTATGCAGATTTACACGCAGCATCTAGTAAATTCAAA--CTTTTTCCCATAAACCTT--GTTGGTAGCCACAAAGATTGTGACGTGTCA--------TTAAGTGCAC-----------CTTT--A-ATG-TTTTT-CCTTGC-AACAGTTTCAAATAAGT-AGAGTTAA-TTTCTATCTAA------------T-------------TTGAAATTT-------CAA-----A-----------------TCAATGTTGGCTTTCCCCGTGCGCTTGTTTTATCTACGTCAGGCGATTTG-TTATG-AACAGCCAATGAAGCCGCAAGGTCAAGTAGAGGGCC--TCCGTTACATT-ACTGGT-A-CCTGTCTagatacagtgtatttaatacatcagaatcgtatgtacctacgaccaatgtcaggatgctggacagggtgacacagttctcatgcagcacgttaaaagtattatgcagatttacacgcagcatctagtaaattcaaactttttcccataaaccttgttggtagccacaaagattgtgacgtgtcattaagtgcacctttaatgtttttccttgcaacagtttcaaataagtagagttaatttctatctaatttgaaatttcaaatcaatgttggctttccccgtgcgcttgttttatctacgtcaggcgatttgttatgaacagccaatgaagccgcaaggtcaagtagagggcctccgttacattactggtacctgtct
gi|4 : gtagaactggcctgaccgtctgatatcgtattatacgggacaaaaacagagacagttactaccgccagtgtagaagccaggaattcctggtcttgactgttgccgccatcatgtagagatttttcgtacattaaacatgggcaataatataggcaatgagtcagaagccaagtggtgctgccagttgaaaacaaaaaatcgggtcatgcacagattagattgcaagtcgggactggcgatttaaacgattatgtattttatgtaaatgaatagtcaatcccacataaacaaaagttcatgtaacgaaaaagatacagtgtAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGACAACAGCGCAAGGTGGTGCTA--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTTGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAATTTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCATATGTACCTACGACCAATGTCAGGATTCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAG--ATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAT-TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTGTGCTGCTC-----------CTTT--A-ATGCTTTTT-CC-TGCAAACAGTTTCAAACA
gi|5 : CAGCATCTCGTAAATTA-AA--CTATTC-CCATAA--CCT--GTTGGTAG-CACAACGATT----C-TGTCATTA-----TCAAGTGCTG-------------TT--A-ATGCTTTTTTCCTTGC-GACGGCTTCAGATAAGTAAGACTTAATTTTCTATCCAAATAGATTTTTGAT------------AGCGTAATTTTTGACAGCAA-----AGAGATAACCGTTCATATT--GTTTTGGCTT-CCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCTCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|5 : GA-TT-GGCTT-ACCCT-CTTAT--ATCGCAC-A-----CG--ATAAA--CAGA--CAG---GTGA-CCA--GTAA-TGTA--A-gtttatcgtgtgcgatataagagggtaagccaatcaa
gi|6 : cagcatctcgtaaattaaactattcccataacctgttggtagcacaacgattctgtcattatcaagtgctgttaatgcttttttccttgcgacggcttcagataagtaagacttaattttctatccaaatagatttttgatagcgtaatttttgacagcaaagagataaccgttcatattgttttggcttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagcctcagtcggtagagggctctTAGA-CT-GACCT-ACCGT-CTGAT--ATCGTAT-ATT--ACG---CAAA--CAGA--CAG---GTGA-CTACCGCCA-TGT-----------AATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACA-TAAACAT-GGCAAT------GGCT--AATGAGCCAACAG-GCAAGGT-GTGCTG--------AAACAAAAA-ATCAGGTCATGCACAGATTAGATTGCAAGTC-GGACTGGCGATTTCAACGAATTAATGTATTTTCTGTAAATTGGATATGaa
gi|7 : AGTAAGAGTTTATTTTCTATCCAA-----------------------------------------------------------------------GTT--GGTTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAA--AAT-GCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACGGATCA-CCTCTCT
gi|7 : -CT-GGCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--CAGA--GAG---GTGA-T--CCGTAA-TGTA--A-gtttatcgtgtgcgatatcagacggcaagccag
gi|8 : agtaagagtttattttctatccaagttggttttccccgtgcacttgttatctacgtcagcgtttgtttaaaatgccaatgagccgcagtcggtagagggctctTGAATTTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCAGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTATACAACAG-CAATG-AGCTGCA--GTC-AGTAGA-GG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|9 : taatt------------AGTTTAATTT-------TGA-----T-----------------T--GTTTTGGCTTTTCCCGTGCACTTG--TTAACTACGTCA-GCG-TTTGTT-------CAGCCGATG-AGCCGCA--TTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGTTTATCGCGGCGGATTCAGACGGCAAAGCCAGTCA
Alignments
lowQualScore : 11 111 1 11 111 22222222 1 1 11 111 44444444444 11 11 11 33333333333 11 88888888888888888888888888888888888888888888888888888888888888888888888 11
lowQualScore : 3 3 6 3 44 4 3 6666 55 00 55 111 4 2 4 666 4 8 8 8 6 8 8 8 0 0 11 111 99999999 8 8 6 2 0 0 0 0 88 1 1 444 55555555555 8 88 0 0 0 6 99 3 11 11 8 0 7777 88888888888 11 8 8 0 8 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 66 4 4 00 4 66 4 4 66 4 5 5
lowQualScore : . . . . .. . . .... .. .. .. ... . . . ... . . . . . . . . . . .. ... ........ . . . . . . . . .. . . ... ........... . .. . . . . .. . .. .. . . .... ........... .. . . . . . . ....................................................................... .. . . .. . .. . . .. . . .
lowQualScore : 3 3 2 1 22 5 6 8888 00 00 55 000 0 3 0 333 0 0 0 0 0 0 0 0 8 8 00 888 00000000 0 0 7 5 8 8 0 0 33 0 4 222 00000000000 0 88 8 6 6 7 00 8 00 00 0 8 4444 00000000000 00 0 0 8 0 8 8 66666666666666666666666666666666666666666666666666666666666666666666666 11 4 4 66 4 11 4 4 11 4 0 0
consensus : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
Reference ( family-3396 ) : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|1 : TAGA-CT-GGCCTTACCGT-CTGATTTATCGTAT-A-TTAACG--ACAAA--CAGA--CAGT--GTGAGCTACCGCCA-TGTA--AAGCCAGGAATTTCCTGG-CTTTGACTGTTGCAGCCATC-TGTAAGAGATTTTTC-TACATTAAATATGGGCAATAACA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAAATTAGATTGCAAGTTGGGACTGGCAATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-GAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCCATGTCAGGATCCTGGACTGGCTT---ACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAACTTTTTTTCCATAA--GTTATGTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTCGAGCGATCGATCCTT--ATATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------TTTGAATTTTGATAGTGCAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTAGTCA-CCTGTCT
gi|10 : TACACTTG--TTATCTACGTCA-GCG-TTT----AT--AACAGCCAATG-AGTCTCA--GTC-GATATAGGG-C--TCT-TTAAAT
gi|10 : TAGA-CT-GGCTT-GCCGT-CTGAT--ATaatatcagacggcaagccagtctagacttaatatagatc
gi|11 : tacacttgttatctacgtcagcgtttataacagccaatgagtctcagtcgatatagggctctttaaataCCAATGTCAGGATGTTGGACATGCTTTCAACACAGAAATGTTCAAGCATACAGCACGTT-AAAA---TATGCAGAGT-----------TCTAGTACATTC-gacttaatatagatc
gi|12 : TTTCTATCTAA------------T-------------TTGAAATTT-------CAAATCAAA-----------------T--GTTTTGGCTTTCCCCGTGCGCTTG--TTATCTACGTCA-GCG-TTTGTTTAT--A
gi|13 : GA-CTTGGCTT-GCCGTGCTGAT--ATCG--C-A-T--ACG--ATAAA--CATA--TA----ACGA--TATCAGCA-CGT---A-GCC
gi|14 : cattagttggtagacgTAGA-CT-GGCCT-ACCGT-CTGAT--ATTGTAT-A-T--ACG--ACAAAAGCACA--AAGATTGTGA-C--GTGCCA-T-TA--A-G
gi|15 : GCACAGATTAGATTGCAAGTCGGGACTGG-GATTTAAACG-ATGTATGTATTTTCTGTAAA
gi|16 : CAATG-AGACA-A--GTC-AATAGAGGG-CTATCT-TTACATTAACTGGTCAGCTTGTC
gi|17 : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTA
gi|19 : TAGA-CT-GGCCT-AC-GT-CTGAT--ATCGTAT-A-T--ACG--ACAaacgcaatgtagat
gi|2 : TAGA-CT-GGCTT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCTTAAATGGGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGATGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAACCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATTGAACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATCCTGGACTGGCTT--GACACAG---T-------CATGCAGCACTTT-AAAGTATTATGCAGAGTTAGCCTCAGCATCTAGTAAATCC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTTTAA-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGCAATTC-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|20 : AGA--CAAA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCA
gi|21 : GCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--C
gi|3 : gTAGAACT-GGCCTGACCGT-CTGAT--ATCGTATTA-T--ACGGGACAAAAACAGAGACAG---TT-A-CTACCGCCAGTGTAGAA-GCCAGGAATT-CCTGGTCTT-GACTGTTGCCGCCATCATGTA-GAGATTTTTCGTACATTAAACATGGGCAATAATATAGGC---AATGAGTCAGAAGC-CAAG-TGGTGCTGCCAGTTGAAAAC-AAAAAATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-AT-TATGTATTTTATGTAAA-TGAATA-GTCAATCCCACATAAACAAAAGTTCATGTAACGAAAA
gi|3 : gATTTAATACATCAGAATCGTATGTACCTACGACCAATGTCAGGATGCTGGACAGG-GT--GACACAGTTCT-------CATGCAGCACGTTAAAAGTATTATGCAGATTTACACGCAGCATCTAGTAAATTCAAA--CTTTTTCCCATAAACCTT--GTTGGTAGCCACAAAGATTGTGACGTGTCA--------TTAAGTGCAC-----------CTTT--A-ATG-TTTTT-CCTTGC-AACAGTTTCAAATAAGT-AGAGTTAA-TTTCTATCTAA------------T-------------TTGAAATTT-------CAA-----A-----------------TCAATGTTGGCTTTCCCCGTGCGCTTGTTTTATCTACGTCAGGCGATTTG-TTATG-AACAGCCAATGAAGCCGCAAGGTCAAGTAGAGGGCC--TCCGTTACATT-ACTGGT-A-CCTGTCTagatacagtgtatttaatacatcagaatcgtatgtacctacgaccaatgtcaggatgctggacagggtgacacagttctcatgcagcacgttaaaagtattatgcagatttacacgcagcatctagtaaattcaaactttttcccataaaccttgttggtagccacaaagattgtgacgtgtcattaagtgcacctttaatgtttttccttgcaacagtttcaaataagtagagttaatttctatctaatttgaaatttcaaatcaatgttggctttccccgtgcgcttgttttatctacgtcaggcgatttgttatgaacagccaatgaagccgcaaggtcaagtagagggcctccgttacattactggtacctgtct
gi|4 : gtagaactggcctgaccgtctgatatcgtattatacgggacaaaaacagagacagttactaccgccagtgtagaagccaggaattcctggtcttgactgttgccgccatcatgtagagatttttcgtacattaaacatgggcaataatataggcaatgagtcagaagccaagtggtgctgccagttgaaaacaaaaaatcgggtcatgcacagattagattgcaagtcgggactggcgatttaaacgattatgtattttatgtaaatgaatagtcaatcccacataaacaaaagttcatgtaacgaaaaagatacagtgtAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGACAACAGCGCAAGGTGGTGCTA--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTTGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAATTTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCATATGTACCTACGACCAATGTCAGGATTCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAG--ATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAT-TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTGTGCTGCTC-----------CTTT--A-ATGCTTTTT-CC-TGCAAACAGTTTCAAACA
gi|5 : CAGCATCTCGTAAATTA-AA--CTATTC-CCATAA--CCT--GTTGGTAG-CACAACGATT----C-TGTCATTA-----TCAAGTGCTG-------------TT--A-ATGCTTTTTTCCTTGC-GACGGCTTCAGATAAGTAAGACTTAATTTTCTATCCAAATAGATTTTTGAT------------AGCGTAATTTTTGACAGCAA-----AGAGATAACCGTTCATATT--GTTTTGGCTT-CCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCTCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|5 : GA-TT-GGCTT-ACCCT-CTTAT--ATCGCAC-A-----CG--ATAAA--CAGA--CAG---GTGA-CCA--GTAA-TGTA--A-gtttatcgtgtgcgatataagagggtaagccaatcaa
gi|6 : cagcatctcgtaaattaaactattcccataacctgttggtagcacaacgattctgtcattatcaagtgctgttaatgcttttttccttgcgacggcttcagataagtaagacttaattttctatccaaatagatttttgatagcgtaatttttgacagcaaagagataaccgttcatattgttttggcttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagcctcagtcggtagagggctctTAGA-CT-GACCT-ACCGT-CTGAT--ATCGTAT-ATT--ACG---CAAA--CAGA--CAG---GTGA-CTACCGCCA-TGT-----------AATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACA-TAAACAT-GGCAAT------GGCT--AATGAGCCAACAG-GCAAGGT-GTGCTG--------AAACAAAAA-ATCAGGTCATGCACAGATTAGATTGCAAGTC-GGACTGGCGATTTCAACGAATTAATGTATTTTCTGTAAATTGGATATGaa
gi|7 : AGTAAGAGTTTATTTTCTATCCAA-----------------------------------------------------------------------GTT--GGTTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAA--AAT-GCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACGGATCA-CCTCTCT
gi|7 : -CT-GGCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--CAGA--GAG---GTGA-T--CCGTAA-TGTA--A-gtttatcgtgtgcgatatcagacggcaagccag
gi|8 : agtaagagtttattttctatccaagttggttttccccgtgcacttgttatctacgtcagcgtttgtttaaaatgccaatgagccgcagtcggtagagggctctTGAATTTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCAGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTATACAACAG-CAATG-AGCTGCA--GTC-AGTAGA-GG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|9 : taatt------------AGTTTAATTT-------TGA-----T-----------------T--GTTTTGGCTTTTCCCGTGCACTTG--TTAACTACGTCA-GCG-TTTGTT-------CAGCCGATG-AGCCGCA--TTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCTg
blockSeqs : A T G G . T T TT GG AG GA ATT . T G AGA . . T . C A . G TA TTA CCAGTTGA A A A G C G GA G A TCA AAATGTTCAAG A GT A T T AC . C AAAA . TA . T A ATAGATTTTTGATAGCGTAATTTTTGACAGCAAAGAGATAACCGTTCATATT TT G A AC A AG A C TA G A G
blockSeqs : . . . . . T . T . AA . . . T . A . . . . . . . . . T . . . . G . . . C T G TTCT . GT . . C . . . AAAA . . . . . TTTGAAATTTCAAATCAAAT . . . G . . . . . . . .
blockSeqs : . . . . . T . T . . . . . T . A . . . . . . . . . T . . . . G . . G A G T . A . . T . . . . . . . . . TTTGAAATTTCAAATCA . . . . . . . . . . . .
blockSeqs : . . . . . T . T . . . . . T . A . . . . . . . . . . . . . . T T T G T . . . . . . . . . . . . . . TAGTGCAATTCCAAAT . . . . . . . . . . . .
blockSeqs : . . . . . T . T . . . . . T . A . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . T . C . . . . . C . A . . . . . . . . . . . . .
blockSeqs : . . . . . C . T . . . . . T . A . . . . . . . . . . . . .
blockSeqs : . . . . . T . T . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . C . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . .
blockSeqCons : ** T*** *** G** ** ** ***********
originalCons : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
finalCons : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-AT---ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTTG--ACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGTTTATCGCGGCGGATTCAGACGGCAAAGCCAGTCA
Alignments
lowQualScore : 11 111 1 11 111 22222222 1 1 11 111 44444444444 11 11 11 33333333333 11 88888888888888888888888888888888888888888888888888888888888888888888888 11
lowQualScore : 3 3 6 3 44 4 3 6666 55 00 55 111 4 2 4 666 4 8 8 8 6 8 8 8 0 0 11 111 99999999 8 8 6 2 0 0 0 0 88 1 1 444 55555555555 8 88 0 0 0 6 99 3 11 11 8 0 7777 88888888888 11 8 8 0 8 0 0 88888888888888888888888888888888888888888888888888888888888888888888888 66 4 4 00 4 66 4 4 66 4 5 5
lowQualScore : . . . . .. . . .... .. .. .. ... . . . ... . . . . . . . . . . .. ... ........ . . . . . . . . .. . . ... ........... . .. . . . . .. . .. .. . . .... ........... .. . . . . . . ....................................................................... .. . . .. . .. . . .. . . .
lowQualScore : 3 3 2 1 22 5 6 8888 00 00 55 000 0 3 0 333 0 0 0 0 0 0 0 0 8 8 00 888 00000000 0 0 7 5 8 8 0 0 33 0 4 222 00000000000 0 88 8 6 6 7 00 8 00 00 0 8 4444 00000000000 00 0 0 8 0 8 8 66666666666666666666666666666666666666666666666666666666666666666666666 11 4 4 66 4 11 4 4 11 4 0 0
consensus : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
Reference ( family-3396 ) : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATNCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTT--A-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGNAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|1 : TAGA-CT-GGCCTTACCGT-CTGATTTATCGTAT-A-TTAACG--ACAAA--CAGA--CAGT--GTGAGCTACCGCCA-TGTA--AAGCCAGGAATTTCCTGG-CTTTGACTGTTGCAGCCATC-TGTAAGAGATTTTTC-TACATTAAATATGGGCAATAACA--GGCT--AATGAGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAAATTAGATTGCAAGTTGGGACTGGCAATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-GAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCCATGTCAGGATCCTGGACTGGCTT---ACACAG---T-------CATGCAGCACGTT-AAAGTATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAACTTTTTTTCCATAA--GTTATGTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTCGAGCGATCGATCCTT--ATATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------TTTGAATTTTGATAGTGCAATTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTAGTCA-CCTGTCT
gi|10 : TACACTTG--TTATCTACGTCA-GCG-TTT----AT--AACAGCCAATG-AGTCTCA--GTC-GATATAGGG-C--TCT-TTAAAT
gi|10 : TAGA-CT-GGCTT-GCCGT-CTGAT--ATaatatcagacggcaagccagtctagacttaatatagatc
gi|11 : tacacttgttatctacgtcagcgtttataacagccaatgagtctcagtcgatatagggctctttaaataCCAATGTCAGGATGTTGGACATGCTTTCAACACAGAAATGTTCAAGCATACAGCACGTT-AAAA---TATGCAGAGT-----------TCTAGTACATTC-gacttaatatagatc
gi|12 : TTTCTATCTAA------------T-------------TTGAAATTT-------CAAATCAAA-----------------T--GTTTTGGCTTTCCCCGTGCGCTTG--TTATCTACGTCA-GCG-TTTGTTTAT--A
gi|13 : GA-CTTGGCTT-GCCGTGCTGAT--ATCG--C-A-T--ACG--ATAAA--CATA--TA----ACGA--TATCAGCA-CGT---A-GCC
gi|14 : cattagttggtagacgTAGA-CT-GGCCT-ACCGT-CTGAT--ATTGTAT-A-T--ACG--ACAAAAGCACA--AAGATTGTGA-C--GTGCCA-T-TA--A-G
gi|15 : GCACAGATTAGATTGCAAGTCGGGACTGG-GATTTAAACG-ATGTATGTATTTTCTGTAAA
gi|16 : CAATG-AGACA-A--GTC-AATAGAGGG-CTATCT-TTACATTAACTGGTCAGCTTGTC
gi|17 : TAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTA
gi|19 : TAGA-CT-GGCCT-AC-GT-CTGAT--ATCGTAT-A-T--ACG--ACAaacgcaatgtagat
gi|2 : TAGA-CT-GGCTT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCTTAAATGGGTCAACAGCGCAAGGTGGTGCTG--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGATGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAAATTGGATATGTCAATCCCA-ATAAACAAAACCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATTGAACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCGTATGTACCTACGACCAATGTCAGGATCCTGGACTGGCTT--GACACAG---T-------CATGCAGCACTTT-AAAGTATTATGCAGAGTTAGCCTCAGCATCTAGTAAATCC-AA--TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTTAAGTGCTC-----------CTTTTAA-ATGCTTTTT-CCTTGC-AACAGTTTCAAATAAGTAAGAGTTAATTTTCTATCTAA------------T------------AGTGCAATTC-------CAA-----A-----------------T--GTTTTGGCTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCGCA--GTC-AGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|20 : AGA--CAAA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCA
gi|21 : GCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--C
gi|3 : gTAGAACT-GGCCTGACCGT-CTGAT--ATCGTATTA-T--ACGGGACAAAAACAGAGACAG---TT-A-CTACCGCCAGTGTAGAA-GCCAGGAATT-CCTGGTCTT-GACTGTTGCCGCCATCATGTA-GAGATTTTTCGTACATTAAACATGGGCAATAATATAGGC---AATGAGTCAGAAGC-CAAG-TGGTGCTGCCAGTTGAAAAC-AAAAAATCGGGTCATGCACAGATTAGATTGCAAGTCGGGACTGGCGATTTAAACG-AT-TATGTATTTTATGTAAA-TGAATA-GTCAATCCCACATAAACAAAAGTTCATGTAACGAAAA
gi|3 : gATTTAATACATCAGAATCGTATGTACCTACGACCAATGTCAGGATGCTGGACAGG-GT--GACACAGTTCT-------CATGCAGCACGTTAAAAGTATTATGCAGATTTACACGCAGCATCTAGTAAATTCAAA--CTTTTTCCCATAAACCTT--GTTGGTAGCCACAAAGATTGTGACGTGTCA--------TTAAGTGCAC-----------CTTT--A-ATG-TTTTT-CCTTGC-AACAGTTTCAAATAAGT-AGAGTTAA-TTTCTATCTAA------------T-------------TTGAAATTT-------CAA-----A-----------------TCAATGTTGGCTTTCCCCGTGCGCTTGTTTTATCTACGTCAGGCGATTTG-TTATG-AACAGCCAATGAAGCCGCAAGGTCAAGTAGAGGGCC--TCCGTTACATT-ACTGGT-A-CCTGTCTagatacagtgtatttaatacatcagaatcgtatgtacctacgaccaatgtcaggatgctggacagggtgacacagttctcatgcagcacgttaaaagtattatgcagatttacacgcagcatctagtaaattcaaactttttcccataaaccttgttggtagccacaaagattgtgacgtgtcattaagtgcacctttaatgtttttccttgcaacagtttcaaataagtagagttaatttctatctaatttgaaatttcaaatcaatgttggctttccccgtgcgcttgttttatctacgtcaggcgatttgttatgaacagccaatgaagccgcaaggtcaagtagagggcctccgttacattactggtacctgtct
gi|4 : gtagaactggcctgaccgtctgatatcgtattatacgggacaaaaacagagacagttactaccgccagtgtagaagccaggaattcctggtcttgactgttgccgccatcatgtagagatttttcgtacattaaacatgggcaataatataggcaatgagtcagaagccaagtggtgctgccagttgaaaacaaaaaatcgggtcatgcacagattagattgcaagtcgggactggcgatttaaacgattatgtattttatgtaaatgaatagtcaatcccacataaacaaaagttcatgtaacgaaaaagatacagtgtAGA-CT-GGCCT-ACCGT-CTGAT--ATCGTAT-A-T--ACG--ACAAA--CAGA--CAG---GTGA-CTACCGCCA-TGTA--A-GCCAGGAATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACATTAAACATGGGCAATAATA--GGCT--AATGAGACAACAGCGCAAGGTGGTGCTA--------AAAC-AAAA-ATCGGGTCATGCACAGATTAGATTGCAAGTTGGGACTGGCGATTTAAACG-ATGTATGTATTTTCTGTAATTTGGATATGTCAATCCCA-ATAAACAAAAGCTCAT-TAACGAAAATGTGTAGTTTCAGTCACTCGATCTTTTAAATT--ACTGGTCTGGTGCCAGGTCATGCGGCATTTCATTTAGTACAGTAGAATCATATGTACCTACGACCAATGTCAGGATTCTGGACTGGCTT--GACACAG---T-------CATGCAGCACGTT-AAG--ATTATGCAGAGTTACACTCAGCATCTAGTAAATTC-AAT-TTTTTTTCCATAA--CCT--GTTGGTAG-CACAAAGATTGTGACGTGTCATCAAAAAGTGTGCTGCTC-----------CTTT--A-ATGCTTTTT-CC-TGCAAACAGTTTCAAACA
gi|5 : CAGCATCTCGTAAATTA-AA--CTATTC-CCATAA--CCT--GTTGGTAG-CACAACGATT----C-TGTCATTA-----TCAAGTGCTG-------------TT--A-ATGCTTTTTTCCTTGC-GACGGCTTCAGATAAGTAAGACTTAATTTTCTATCCAAATAGATTTTTGAT------------AGCGTAATTTTTGACAGCAA-----AGAGATAACCGTTCATATT--GTTTTGGCTT-CCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAT--AACAGCCAATG-AGCCTCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|5 : GA-TT-GGCTT-ACCCT-CTTAT--ATCGCAC-A-----CG--ATAAA--CAGA--CAG---GTGA-CCA--GTAA-TGTA--A-gtttatcgtgtgcgatataagagggtaagccaatcaa
gi|6 : cagcatctcgtaaattaaactattcccataacctgttggtagcacaacgattctgtcattatcaagtgctgttaatgcttttttccttgcgacggcttcagataagtaagacttaattttctatccaaatagatttttgatagcgtaatttttgacagcaaagagataaccgttcatattgttttggcttccccgtgcacttgttatctacgtcagcgtttgtttataacagccaatgagcctcagtcggtagagggctctTAGA-CT-GACCT-ACCGT-CTGAT--ATCGTAT-ATT--ACG---CAAA--CAGA--CAG---GTGA-CTACCGCCA-TGT-----------AATT-CCTGG-CTT-GACTGTTGC-GCCATC-TGTA-GAGATTTTTC-TACA-TAAACAT-GGCAAT------GGCT--AATGAGCCAACAG-GCAAGGT-GTGCTG--------AAACAAAAA-ATCAGGTCATGCACAGATTAGATTGCAAGTC-GGACTGGCGATTTCAACGAATTAATGTATTTTCTGTAAATTGGATATGaa
gi|7 : AGTAAGAGTTTATTTTCTATCCAA-----------------------------------------------------------------------GTT--GGTTTTCCCCGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTAA--AAT-GCCAATG-AGCCGCA--GTC-GGTAGAGGG-C--TCT-TTACATT-ACGGATCA-CCTCTCT
gi|7 : -CT-GGCTT-GCCGT-CTGAT--ATCG--C-A-C--ACG--ATAAA--CAGA--GAG---GTGA-T--CCGTAA-TGTA--A-gtttatcgtgtgcgatatcagacggcaagccag
gi|8 : agtaagagtttattttctatccaagttggttttccccgtgcacttgttatctacgtcagcgtttgtttaaaatgccaatgagccgcagtcggtagagggctctTGAATTTT-------CAA-----A-----------------T--GTTTTGGCTTTCCCAGTGCACTTG--TTATCTACGTCA-GCG-TTTGTTTATACAACAG-CAATG-AGCTGCA--GTC-AGTAGA-GG-C--TCT-TTACATT-ACTGGTCA-CCTGTCT
gi|9 : taatt------------AGTTTAATTT-------TGA-----T-----------------T--GTTTTGGCTTTTCCCGTGCACTTG--TTAACTACGTCA-GCG-TTTGTT-------CAGCCGATG-AGCCGCA--TTC-GGTAGAGGG-C--TCT-TTACATT-ACTGGTCA-CCTGTCTg
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): GGTTTATCGCGGCGGATTCAGACGGCAAAGCCAGTCA