lowQualScore : 11111111111111111111111111111111111111111111111 111111111111111
lowQualScore : 11111111 1111111111 33333333333333333333333333333333333333333333333 1 11111 4444444444444444444444 2222 1111111 11 1 55555555555555555555555555555555555555555 1111 111111 3333333 000000000000000 1 44444444444 1 11 222 22
lowQualScore : 4 3 3 3 555 3 3 3 999 3 0 3 44444444 0 3 3 3 44 44 3 555 3 5555555555 55 22222222222222222222222222222222222222222222222 777 0 0 55555 8888888888888888888888 4 99 3333 6 0000000 55 55 4 8 5 11 5 777 0 0 5 1 33333333333333333333333333333333333333333 1 4444 999999 6 999999 99 1 4444444 5 1 000000000000000 0 66666666666 0 99 7 6 6 11 3 6 6 5 5 6 666 6 00
lowQualScore : . . . . ... . . . ... . . . ........ . . . . .. .. . ... . .......... .. ............................................... ... . . ..... ...................... . .. .... . ....... .. .. . . . .. . ... . . . . ......................................... . .... ...... . ...... .. . ....... . . ............... . ........... . .. . . . .. . . . . . . ... . ..
lowQualScore : 0 6 3 3 888 3 3 3 666 3 4 3 22222222 3 3 3 3 66 66 3 888 3 1111111111 00 00000000000000000000000000000000000000000000000 000 0 3 44444 8888888888888888888888 0 55 6666 2 0000000 55 55 0 2 0 99 0 000 2 7 0 7 66666666666666666666666666666666666666666 7 3333 555555 7 222222 22 0 3333333 7 7 000000000000000 0 00000000000 0 00 0 0 0 00 6 7 7 0 0 7 333 7 88
consensus : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CC---------GCATTC--A--------CG-G----CG---TTTT-CA--A----A-----------GCAG---ATACCGGNAAATAAAACGTC----CCATTTCTTTCAAATGAG--C-TA---CA------A-TAT-GAAA---AAAATACAT--AGC--TGG--TAC--GAGGCA-CAATAA-G--TCTA-TTGATCG--TATCGTTTATCGATGATACCTGATTTTAGCTT--CGTTT--TTGA-G--AT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT--TTACAAATCACAGG-CACA-TACTCAC-ATAAACATGAACTCATTTCATAAACAAC-AT-GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACNGGTTTTACAATATAT--CGTCNTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGCC-GATCACGGTAATTTCTTAC
Reference ( gi|3 ) : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCA--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CC---------GCATTC--A--------CG-G----CG---T-------------A-----------GCAG---ATACCGGGAAATAAAACATC----TCATTTCTTTCAATTTGG--T-TA---GA------A-TAT-AAAA---CAAGTACAT--AAC--TGG--TAC--GAGGCA-CAGTAA-G--TCTA-TTGATCG--TATCGTTTATCGACGATACCTGAATTTAGCTT--CATTC--TTGA-G--AT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACATAGA------TTT--TTACAAATTACAGG-CACG-AACTCAC-ATAAACATGAACTCATT---------------GGAAAATCACATTTT-TGTTGTTT----------AAACA-AACAAGTTTTATAACATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGCA-GATCACGGTAATTTCTTAC
gi|4 : ATCACAAAC-GG-TAA-T-C---A-GT-AAT-ACAG--G-CGA---------------------------------GTAAT--TGC--A-AC---A-CC---------GCATTC--A--------CG-G----CG---TTTTACAGGAATGAA-----------GTAG---ATACCGG-AAGTAAAACATC----CCATTTCTTTGAAATGAG--T-TA---TA------A-TAT-GAAA---AAAATATAT--AGT--TGG--TAA--GAGGCA-CAATAG-G--TCTA-TTGATCG--TATCGTTTATAGATAATACCTGATTTTAGCTA--CGTTTTATTCAGG--ATAAAGT-----------------CACAAGGTTGATGG-AAAAATGCTTCG--GAAGAAGTTTCT-GACAAAGA------ATG--CTTCAAATCACAGG-CACA-TACTCAC-ATAAAAATGAACTCATTTCATAAACAACGATGGGAAAATCATATTTG-TGTTGTTC----------AAACA-AACCGATTTTACAATATAT--CGTCCTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCATAAC
gi|2 : TCACGAAGTGG-TAA-T-C---A-GT-AAC-GCCCCTG-CGGATCGGTATGTAACGCC---GCTCTATTAC-CGCGTCCT--TGT--GCAC---A-CCCAATTCATAGCAATC--ATTTCCAAGCG-GTTTTCGA--T-------------AAGAGAA-----GTAG---ATGTCGGCAAATAAAATGTC----GAATTGTTTTCAAATAAG--C-TACACGA------A-AAC-AAAATACTAAGTTTAT--CAA--TGA--TACCTGAG------TTAA-GC-TTTG-TTG----------GTTTTT--AAGAT-C----ATTTAG--------------GA-GAAAT----------------------CACAAGGTTAGT-G-AAAAATGCATCG--GTAGAAGTTTCT-AAAGTAGA------TTT--TTACAAATCACAGGTTATGTAGTTCAA-ACAAACA
gi|16 : TCACCGAT-GG-TAA-T-C---A-GT-AA-------------GTTGAC-AGTAACGCCGTAT----ATT-C-CG-GTAAT--TGT--A-AC---A-CC---------GCATTC--A--------ggtatcacaatacatcgtcttttgaagtcattttcgaaagtaacacatcataacacggaacaagaacgcctatcacggtaataacttatacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|8 : tCACCGAG-GG-TAA-T-C---A-GT-AAC-ACCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-ACTCGATCC---------GCAAAC--A--------CG-G----CG---TTTTGCACGAGAGAA-----------GCAG---ATACCGGGAAGTAAATCATC----CCATTTCTTTCAA-ATGA--TCTA---CA------A-TAT-GAAA---AAAATACAT--AGC--TGG--TAC--GAGGCA-CAATAA-GACTTTA-TTGATCG--TATCGTTTATCGATAATACCTGAGTTTATCTT--CGTTT--TAGA-C--AT----C-----------------
gi|9 : CACCGAA-AG-TAA-T-C---A-GT-AAT-GTTG--G-TGAATTGGT-TGTAACGC---------------CG---AAT--T-------C---A-C----------ACATTT--A-----------------G---A-------------A-----------GCAG---ATACCGGTTACTAAAACATC-----AATTTCTCTCAAAAGAG--C-TA---CA------A-TCT-GAAA----AAATACAT--GGT--TGG--AGC--GAGGCA-CTATAA-G--TTAG-TTGATCG--TATTGTTTATCCATGATACCAGATTTTTGCTT--TGTTT--TTTA-G--AT----C-----------------att
gi|6 : CGCCGAG-GG-TAAATGC---ATGT-GTTTGCTA--G-TGAATCGGT-TGTAACGCC--GA----ACT-CGCG-GCATT--T-------C---A-C----------GCGTTT--A-----------------G---A-------------A-----------GCAG---ATACCGGTTACCAAAACATC----CAATTTCTCTCAAATGAG--C-TA---CA------A-TCTCGGAA---AAAATACAT--AGC--TGGTATAC--GAGGC---------------A-TTGATCG---------TATCGATGATACTTGATTTTTGTTT--TA-TC--TAGA-G-----------------------------AAAGTCG-T-G------TGC-TTGATGAAGATGTTTCA-AGCGTAGATTTTTTTTT--TTACATATTACAGA----------CAC-ATAAACATGGACTattcaggaga
gi|1 : ttgtcagatcagtataCACCAAG-GGGTAA-T-C---A-GTTAAC-GCCG--G-CGAATCAGT-T---ACACG--AG----A------G---AA----GC--A-GA---A-CC---------G-----------------G-G----AG---T-------------T-----------TCAA---A-AC----ATATA---TATA----TCA-TTCTTTCAAATAAGCAT-AA---CA------ATTATGAAAA---CAATTACAT--GGCTTTGG--TTC--GAGGCACCAATAAGG--TCTACTCGATCGTTTATCGTTTATCGATAATACCTTATTTTAGCCTCCCGTTC---TGA-G--AT----CATTCAATGAGAAAGTCACACGAGGTTGAT-A-GAAAA-------------AAATTTCTAAACAAAGA------TTTAAAAAAAAAATACAGG--ACA-TACTCTCTATAAAC-TGAACTAATT---------------ttgttcataaa
gi|15 : ctttaCACCTAG-GG-TAA-T-C---A-GT-ACC-GCCG--G-TGAATCGGT-TGAAGAGTC--GG----ATT-C-CG-GTAAT--TGT--A-AC---A-CC---------ACATTtcataaacaacgatcggaaaaatctttttttgtcttttttgttttttttttttgttgtttgtgtgtatcaaaacacaacaggcttacaatatatatcctcttttgaagtcatttcggaacagtaaccacccccgcacaatggaacaagttgacgcgcgatcacggtaatttctttcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|7 : cACCAAA-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATTGGT-TGTAACCCC--AG----ATT-C-AG-GTAATATTGT--A-AC---A-CT---------GCATTC--A--------CA-G----CA---TTTTACACAAGAGAA-----------GCAG---ATACCGGCAAATAAAACATCATTCTCATTTCTTTCAAAT--G--T-TA---GAGCTACAA-TAT-GAAA---AAAATACAG--AGC--TGG--TAC--GAGGCA-CAATAA-G--TCTA-TTGATCA--TAACATTTATCAACGATACCTGATTTGAGCTT--CGTTT--TTGA-G--AT----C-----------------
gi|5 : GAG-GG-TA--T-C---A-GT-AAC-CGCG--G-CGA-TCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CA---------GCATTTTAA--------CGAG----AG---A-------------A-----------GCAG---ATACCGGGAAATAATACGTC----TCATTTCTTTCAAATGAG--C-TA---CA------A-TAT-AAAA----ATATACAT--AGC--TGG--TAT--GAGGTA-attcaggagaaagacacaaggtt
gi|10 : G-TAA-T-CCCAA-GT-AAC-GCCA--C-CGAACCGGT-TGTAACGCC--AGT---TTT-C-CG-GTAAT--TGTTGA-AC---A-CC---------GAATTC--A--------CG-G----TGATTT-------------AAAGCGATAGATGCAG---ACAATGGTAAAGTAAACATC----CCATTGCATTCAAAGAGA--T-AA---CA------A-TAT-GGAA---AAAATACATGAGAC--TGG--TAC--GAGGCA-CAtcattcaggagaaagacatgcacaaagttgatggaaaaatgcattgaaagaagtttctaacatagatttttacaaatcacagacacatactcacataaacatgatgtcatttcataaacaacaattggaaaatcacatttttgttgttcaaacaaaccggttttacaatatatcgtcgtttgaagtcattttcgaaagtaaatgccctgtaac
gi|13 : ccggtgtA-T-C---A-GT-AAC-GCTG--GGCGAATCAGT-TGTAATGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CC---------TCATTC--A--------TG-G----CG---TTTTACACAAG---A-----------GAAGATAATATCGGGAAGAAAAATGTT----AAATTTCTTTTAac
gi|17 : c-TAT-GAAA---AAATTACAT--CGC--TGG--TAC--GACGCA-CAATAA-G--TCTA-TCGATCG--TATCGTTTAT
gi|5 : GA-C--AT----G-----------------CACAAAGTTGAT-GGAAAAATGCATTG--AAAGAAGTTTCT-AACATAGA------TTT--TTACAAATCACAGA-CACA-TACTCAC-ATAAACATGATGTCATTTCATAAACAACAATTGGAAAATCACATTTT-TGTTGTTC----------AAACA-AACCGGTTTTACAATATAT--CGTCGTTTGAAGTCATTTTCGAA-AGTAAA-TG-CCCTGTAAC
gi|12 : gagggtatcagtaaccgcggcgatcggttgtaacgccagattccggtaattgtaacacagcattttaacgagagaagcagataccgggaaataatacgtctcatttctttcaaatgagctacaatataaaaatatacatagctggtatgaggtatcattcaggagaaa-----------------CAAAAGTTTGACAG-AGAAGTGCATCT--GAAGATGTTTCT-AACGTAGA------TTT--TTACAAGTCACAGG-TACA-TACTCAA-ATAAACATG-ATTCATT---------------
gi|18 : gatcattgaggagaaagaACTCGC-ATAAACATAAACTCATT---------------ttcatcaataacgattgaaaa
gi|2 : gacatacAAATCACAGGTTATGTAGTTC----------AAACA-AACAGGTATCACAATACAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CATCATAACACGGAAC-AAG-A-A-CGCC-TATCACGGTAATAACTTAtcataaacaacgattggaaaat
gi|1 : tcacgaagtggtaatcagtaacgcccctgcggatcggtatgtaacgccgctctattaccgcgtccttgtgcacacccaattcatagcaatcatttccaagcggttttcgataagagaagtagatgtcggcaaataaaatgtcgaattgttttcaaataagctacacgaaaacaaaatactaagtttatcaatgatacctgagttaagctttgttggtttttaagatcatttaggagaaatcacaaggttagtgaaaaatgcatcggtagaagtttctaaagtagatttttacTTTT-TGTTGTTTGTGTGTATCAAAACACAACAGGCTT-ACAATATATATCCTCTTTTGAAGTCATTTCGGAACAGT-AACCACCCCCGCACAATGGAACAAGT-TGA-CGCGCGATCACGGTAATTTCTTtacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|14 : ctttacaccaaggggtaatcagttaacgccggcgaatcagttacacgagagaagcagaaccgggagtttcaaaacatatatatatcattctttcaaataagcataacaattatgaaaacaattacatggctttggttcgaggcaccaataaggtctactcgatcgtttatcgtttatcgataataccttattttagcctcccgttctgagatcattcaatgagaaagtcacacgaggttgatagaaaaaaatttctaaacaaagatttaaaaaaaaaatacaggacatactctctataaactgaactaatttcataaacaacgatcggaaaaatctttttttgtcttttttgttttttt--CGTCGTTTGAAGTAATTTTCGAA-AGT-AC-TA-CCTTATAACATGGAAC-AAT-T-A-CGCC-GATCACGGTAATtcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|11 : GTCATTTTCAAA-AGT-AA-CA-CCAAGTAACATGGAAC-AGT-A-A-CGCC-GATCACGGTAATTTCTTACaagtagaacgattctatcaatgaatcaaattgcacatt
gi|19 : -CA-TCCCGTAACATGGAAC-AGTATAA-CGCT-GATCACAGTAATTTCTatagaaggatttaaccatcaatcaaattaaatattgtttcagacgaagacagtaaatcccaactatagatgacagtgcgttatcagaa
gi|20 : -CA-TCCCGTAACATGGA-C-AGTAT-AACGCT-GATCACAGTAATTTCT
Alignments
lowQualScore : 888888888888888888888888888888888888888 111111 111111 11 1111 5555555555555555555555 1 111111 111 11 4444444 3333333333 222
lowQualScore : 3 3 3 3 555 3 3 3 44 3 0 3 77777777 6 3 3 0 44 44 3 555 3 0 1 44 3 222222222222222222222222222222222222222 666 666 000000 5 2 111111 0 8888 4 8 3 3 3 3 3 55 55 4 00 4 66 0 66 0000 66 0 4 6666666666666666666666 0 1 55 5 77 5 666666 000 1 11 5 5 0 5 2222222 0 6 5555555555 8 1 3 99 1 5 5 4 4 5 111 5 5
lowQualScore : . . . . ... . . . .. . . . ........ . . . . .. .. . ... . . . .. . ....................................... ... ... ...... . . ...... . .... . . . . . . . .. .. . .. . .. . .. .... .. . . ...................... . . .. . .. . ...... ... . .. . . . . ....... . . .......... . . . .. . . . . . . ... . .
lowQualScore : 6 3 1 1 444 1 1 1 22 1 4 1 22222222 2 1 1 4 22 22 1 444 1 8 5 66 6 999999999999999999999999999999999999999 444 444 555555 8 5 777777 9 5555 0 0 6 6 6 6 6 00 00 0 66 4 11 2 99 6666 99 1 4 8888888888888888888888 1 4 99 1 99 7 444444 000 7 55 0 0 1 7 7777777 8 7 0000000000 0 0 8 22 0 7 7 4 4 7 333 7 7
consensus : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA--T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
Reference ( family-3342 ) : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACATA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAAC-A--T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACNGGTTTTACAATATAT--CGTCNTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
gi|1 : CACCAAG-GGGTAA-T-C---A-GTTAAC-GCCG--G-CGAATCAGT-T---ACACG--AG----A--------G-AA----GC--A-GA---A-CCG---------G-GA---------------GTTT----CA------A-------AAC---AT---ATAT------------ATA-----------TCATT-CTTTCAAATA----AGCATAACAATTAT-GAAAACAATTACAT-GG-CTTTGG--TTCGAGGCACCAATAAGG-TCTACTCGATCGTTTATCGTTTATCGATAATACCTTATTTTAGCCTCCCG-T----T--CTGA-GAT----CATTCAATGAGAAAGTCACACGAGGTTGAT-A-GAAAA-------------AAATTTCTAAACAAAGA------TTTAAAAAAAAAAT-ACAGG--ACATA-CTCTCTATAAAC-TGAACTAA-TTTCATAAACAACGA--TCGGAAAAATC---TTTT-T-TTGT
gi|1 : ctttaTTTT-TGTTGTTTGTGTGTATCAAAACACAACAGGCTT-ACAATATATATCCTCTTTTGAAGTCATTTCGGAACAGT-AACCACCCCCGCACAATGGAACAAGT-TGA-CGCGCGATCACGGTAATTTCTTcttttttgttttttttttttgttgtttgtgtgtatcaaaacacaacaggcttacaatatatatcctcttttgaagtcatttcggaacagtaaccacccccgcacaatggaacaagttgacgcgcgatcacggtaatttctttcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|10 : ctttacaccaaggggtaatcagttaacgccggcgaatcagttacacgagagaagcagaaccgggagtttcaaaacatatatatatcattctttcaaataagcataacaattatgaaaacaattacatggctttggttcgaggcaccaataaggtctactcgatcgtttatcgtttatcgataataccttattttagcctcccgttctgagatcattcaatgagaaagtcacacgaggttgatagaaaaaaatttctaaacaaagatttaaaaaaaaaatacaggacatactctctataaactgaactaatttcataaacaacgatcggaaaaatctttttttgtcttttttgtttttttG-TAA-T-CCCAA-GT-AAC-GCCA--C-CGAACCGGT-TGTAACGCC--AG----TTTTC-CG-GTAAT--TGTTGA-AC---A-CCGAATTC--ACG-GT---------------GATTT----A------A-------AGCGATAG---ATGCAGACAATGGTAAAGTAAACATC----CCATTGCATTCAAA-G----AGA-TAACAAT-AT-GGAAAAAAT-ACATGAGACT--GG--TACGAGGCAC-AAtcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|11 : ccggtgtGTCATTTTCAAA-AGT-AA-CA-CCAAGTAACATGGAAC-AGT-A-A-CGC-CGATCACGGTAATTTCTTACc
gi|12 : -----------------CAAAAGTTTGACAG-AGAAGTGCATCT--GAAGATGTTTCT-AACGTAGA------TTT---TTACAAGTCACAGG-TACATA-CTCAA-ATAAACATG-ATTCATTTTCATCAATAACGA--T--TGAAAAatagaaggatttaaccatcaatcaaattaaatattgtttcagacgaagacagtaaatcccaactatagatgacagtgcgttatcagaa
gi|13 : gatcattgaggagaaagaA-T-C---A-GT-AAC-GCTG--GGCGAATCAGT-TGTAATGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCTCATTC--ATG-GC---------------GTTTTACACA------AG------AGA---AGATAATAT------CGGGAAGAAAAATGTT----AAATTTCTTTTA
gi|14 : c--CGTCGTTTGAAGTAATTTTCGAA-AGT-AC-TA-CCTTATAACATGGAAC-AAT-T-A-CGC-CGATCACGGTAAT
gi|15 : CACCTAG-GG-TAA-T-C---A-GT-ACC-GCCG--G-TGAATCGGT-TGAAGAGTC--GG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCACATTaagtagaacgattctatcaatgaatcaaattgcacatt
gi|16 : cTCACCGAT-GG-TAA-T-C---A-GT-AA--GTTG--A-CA---------GTAACGCCGTAT----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--A
gi|17 : tT-AT-GAAAAAATT-ACAT-CG-CT--GG--TACGACGCAC-AATAAG--TCTATC-GATCGT--ATCGTTTAT
gi|18 : GA-CATACA-CTCGC-ATAAACATAAACTCA-TTTCATAAACAAC-GATT--GGAAAAT
gi|19 : -CA-TCCCGTAACATGGAAC-AGTATAA-CGC-TGATCACAGTAATTTCT
gi|2 : TCACGAAGTGG-TAA-T-C---A-GT-AAC-GCCCCTG-CGGATCGGTATGTAACGCC---GCTCTATTAC-CGCGTCCT--TGT--GCAC---A-CCCAATTC--ATA-GCAATCATTTCCAAGCGGTTTT---CG------ATAAGAGAAGT---AG---ATGT------CGGCAAATAAAATGTC----GAATTGTTTTC-----------------------------AAAT-A----AG-CT--A---CACGAAA-AC-AA-AA-----TACT-AA---------GTTTATCAATGATACCTGAGTTAAGCTT--TGTTGGTTT--TTAA-GAT----CATTTAGGAGAAAT----CACAAGGTTAGT-G-AAAAATGCATCG--GTAGAAGTTTCT-AAAGTAGA------TTT---TTACAAATCACAGGTTATGTAGTTCAA-ACAAACA
gi|2 : AAATCACAGGTTATGTAGTTC----------AAACA-AACAGGTATCACAATACAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CATCATAACACGGAAC-AAG-A-A-CGC-CTATCACGGTAATAACTTAggtatcacaatacatcgtcttttgaagtcattttcgaaagtaacacatcataacacggaacaagaacgcctatcacggtaataacttatacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|20 : tcacgaagtggtaatcagtaacgcccctgcggatcggtatgtaacgccgctctattaccgcgtccttgtgcacacccaattcatagcaatcatttccaagcggttttcgataagagaagtagatgtcggcaaataaaatgtcgaattgttttcaaataagctacacgaaaacaaaatactaagtttatcaatgatacctgagttaagctttgttggtttttaagatcatttaggagaaatcacaaggttagtgaaaaatgcatcggtagaagtttctaaagtagatttttac-CA-TCCCGTAACATGGA-C-AGTAT-AACGC-TGATCACAGTAATTTCTtacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|3 : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCA--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GT----------------------AGC---AG---ATAC------CGGGAAATAAAACATC----TCATTTCTTTCAATTT----GGT-TA-GAAT-AT-AAAACAAGT-ACAT-AA-CT--GG--TACGAGGCAC-AGTAAG--TCTATT-GATCGT--ATCGTTTATCGACGATACCTGAATTTAGCTT--CATT----C--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACATAGA------TTT---TTACAAATTACAGG-CACGAA-CTCAC-ATAAACATGAACTCA-T----------------T--GGAAAATCACATTTT-TGTTGTTT----------AAACA-AACAAGTTTTATAACATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-AGATCACGGTAATTTCTTAC
gi|4 : ATCACAAAC-GG-TAA-T-C---A-GT-AAT-ACAG--G-CGA---------------------------------GTAAT--TGC--A-AC---A-CCGCATTC--ACG-GC---------------GTTTTA--CAGGAATGA-------AGT---AG---ATAC------CGG-AAGTAAAACATC----CCATTTCTTTGAAATG----AGT-TA-TAAT-AT-GAAAAAAAT-ATAT-AG-TT--GG--TAAGAGGCAC-AATAGG--TCTATT-GATCGT--ATCGTTTATAGATAATACCTGATTTTAGCTA--CGTT----TTATTCAGGATAAAGT-----------------CACAAGGTTGATGG-AAAAATGCTTCG--GAAGAAGTTTCT-GACAAAGA------ATG---CTTCAAATCACAGG-CACATA-CTCAC-ATAAAAATGAACTCA-TTTCATAAACAACGA--TG-GGAAAATCATATTTG-TGTTGTTC----------AAACA-AACCGATTTTACAATATAT--CGTCCTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCATAAC
gi|5 : GAG-GG-TA--T-C---A-GT-AAC-CGCG--G-CGA-TCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CAGCATTTTAACGAGA---------------G---------------A-------AGC---AG---ATAC------CGGGAAATAATACGTC----TCATTTCTTTCAAATG----AGC-TA-CAAT-AT--AAAAATAT-ACAT-AG-CT--GG--TATGAGGTA
gi|5 : GA-CAT----G-----------------CACAAAGTTGAT-GGAAAAATGCATTG--AAAGAAGTTTCT-AACATAGA------TTT---TTACAAATCACAGA-CACATA-CTCAC-ATAAACATGATGTCA-TTTCATAAACAAC-AATT--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACCGGTTTTACAATATAT--CGTCGTTTGAAGTCATTTTCGAA-AGTAAA-TG-CCCTGTAACtcattcaggagaaagacatgcacaaagttgatggaaaaatgcattgaaagaagtttctaacatagatttttacaaatcacagacacatactcacataaacatgatgtcatttcataaacaacaattggaaaatcacatttttgttgttcaaacaaaccggttttacaatatatcgtcgtttgaagtcattttcgaaagtaaatgccctgtaac
gi|6 : gagggtatcagtaaccgcggcgatcggttgtaacgccagattccggtaattgtaacacagcattttaacgagagaagcagataccgggaaataatacgtctcatttctttcaaatgagctacaatataaaaatatacatagctggtatgaggtatcattcaggagaaaCGCCGAG-GG-TAAATGC---ATGT-GTTTGCTA--G-TGAATCGGT-TGTAACGCC--GA----ACT-CGCG-G--------------C---A-T----TTC--ACG--C---------------GTTT-----AG-----A-------AGC---AG---ATAC------CGGTTACCAAAACATC----CAATTTCTCTCAAATG----AGC-TA-CAAT-CTCGGAAAAAAT-ACAT-AG-CT--GGTATACGAGGC--------------ATT-GATCG---------TATCGATGATACTTGATTTTTGTTT--TATC----T-----A-G-------------------------AGAAAGTCG-T-G------TGC-TTGATGAAGATGTTTCA-AGCGTAGATTTTTTTTT---TTACATATTACAGA----------CAC-ATAAACATGGACTTT-GTTCATAAA
gi|7 : ttgtcagatcagtataACCAAA-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATTGGT-TGTAACCCC--AG----ATT-C-AG-GTAATATTGT--A-AC---A-CTGCATTC--ACA-GC---------------ATTTTACACA------AGAGA---AGC---AG---ATAC------CGGCAAATAAAACATCATTCTCATTTCTTTCAAATGTTAGAGC-TA-CAAT-AT-GAAAAAAAT-ACAG-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCAT--AACATTTATCAACGATACCTGATTTGAGCTT--CGTT----T--TTGA-GAT----C-----------------
gi|8 : CACCGAG-GG-TAA-T-C---A-GT-AAC-ACCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-ACTCGATCCGCAAAC--ACG-GC---------------GTTTTG--CACGAGAGA-------AGC---AG---ATAC------CGGGAAGTAAATCATC----CCATTTCTTTCAAATG----ATC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAGACTTTATT-GATCGT--ATCGTTTATCGATAATACCTGAGTTTATCTT--CGTT----T--TAGA-CAT----C-----------------attcaggagaaagacacaaggtt
gi|9 : CACCGAA-AG-TAA-T-C---A-GT-AAT-GTTG--G-TGAATTGGT-TGTAACGCC--GA----ATT-C------------------AC---A-C---ATTT--A-----------------------------G------A-------AGC---AG---ATAC------CGGTTACTAAAACATC----A-ATTTCTCTCAAAAG----AGC-TA-CAAT-CT-GAAAA-AAT-ACAT-GG-TT--GG--AGCGAGGCAC-TATAAG--TTAGTT-GATCGT--ATTGTTTATCCATGATACCAGATTTTTGCTT--TGTT----T--TTTA-GAT----C-----------------att
Alignments
lowQualScore : 888888888888888888888888888888888888888 111111 111111 11 1111 5555555555555555555555 1 111111 111 11 2222 3333333333 222
lowQualScore : 3 3 3 3 555 3 3 3 44 3 0 3 77777777 6 3 3 0 44 44 3 555 3 0 1 44 3 222222222222222222222222222222222222222 666 666 000000 5 2 111111 0 8888 4 8 3 3 3 3 3 55 55 4 00 4 66 0 66 0000 66 0 4 6666666666666666666666 0 1 55 5 77 5 666666 000 1 11 3 5 5 0 5 0000 0 6 5555555555 8 0 3 99 1 5 5 4 4 5 111 5 5
lowQualScore : . . . . ... . . . .. . . . ........ . . . . .. .. . ... . . . .. . ....................................... ... ... ...... . . ...... . .... . . . . . . . .. .. . .. . .. . .. .... .. . . ...................... . . .. . .. . ...... ... . .. . . . . . .... . . .......... . . . .. . . . . . . ... . .
lowQualScore : 6 3 1 1 444 1 1 1 22 1 4 1 22222222 2 1 1 4 22 22 1 444 1 8 5 66 6 999999999999999999999999999999999999999 444 444 555555 8 5 777777 9 5555 0 0 6 6 6 6 6 00 00 0 66 4 11 2 99 6666 99 1 4 8888888888888888888888 1 4 99 1 99 7 444444 000 7 55 1 0 0 1 7 2222 8 7 0000000000 0 6 8 22 5 7 7 4 4 7 333 7 7
consensus : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA-T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
Reference ( family-3342 ) : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA-T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
gi|1 : CACCAAG-GGGTAA-T-C---A-GTTAAC-GCCG--G-CGAATCAGT-T---ACACG--AG----A--------G-AA----GC--A-GA---A-CCG---------G-GA---------------GTTT----CA------A-------AAC---AT---ATAT------------ATA-----------TCATT-CTTTCAAATA----AGCATAACAATTAT-GAAAACAATTACAT-GG-CTTTGG--TTCGAGGCACCAATAAGG-TCTACTCGATCGTTTATCGTTTATCGATAATACCTTATTTTAGCCTCCCG-T----T--CTGA-GAT----CATTCAATGAGAAAGTCACACGAGGTTGAT-A-GAAAA-------------AAATTTCTAAACAAAGA------TTTAAAAAAAAAAT-ACAGG--ACATA-CTCTCTATAAAC-TGAACTAA-TTTCATAAACAACGA-TCGGAAAAATC---TTTT-T-TTGT
gi|1 : ctttaTTTT-TGTTGTTTGTGTGTATCAAAACACAACAGGCTT-ACAATATATATCCTCTTTTGAAGTCATTTCGGAACAGT-AACCACCCCCGCACAATGGAACAAGT-TGA-CGCGCGATCACGGTAATTTCTTcttttttgttttttttttttgttgtttgtgtgtatcaaaacacaacaggcttacaatatatatcctcttttgaagtcatttcggaacagtaaccacccccgcacaatggaacaagttgacgcgcgatcacggtaatttctttcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|10 : ctttacaccaaggggtaatcagttaacgccggcgaatcagttacacgagagaagcagaaccgggagtttcaaaacatatatatatcattctttcaaataagcataacaattatgaaaacaattacatggctttggttcgaggcaccaataaggtctactcgatcgtttatcgtttatcgataataccttattttagcctcccgttctgagatcattcaatgagaaagtcacacgaggttgatagaaaaaaatttctaaacaaagatttaaaaaaaaaatacaggacatactctctataaactgaactaatttcataaacaacgatcggaaaaatctttttttgtcttttttgtttttttG-TAA-T-CCCAA-GT-AAC-GCCA--C-CGAACCGGT-TGTAACGCC--AG----TTTTC-CG-GTAAT--TGTTGA-AC---A-CCGAATTC--ACG-GT---------------GATTT----A------A-------AGCGATAG---ATGCAGACAATGGTAAAGTAAACATC----CCATTGCATTCAAA-G----AGA-TAACAAT-AT-GGAAAAAAT-ACATGAGACT--GG--TACGAGGCAC-AAtcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|11 : ccggtgtGTCATTTTCAAA-AGT-AA-CA-CCAAGTAACATGGAAC-AGT-A-A-CGC-CGATCACGGTAATTTCTTACc
gi|12 : -----------------CAAAAGTTTGACAG-AGAAGTGCATCT--GAAGATGTTTCT-AACGTAGA------TTT---TTACAAGTCACAGG-TACATA-CTCAA-ATAAACATG-ATTCATTTTCATCAATAACGA-T--TGAAAAatagaaggatttaaccatcaatcaaattaaatattgtttcagacgaagacagtaaatcccaactatagatgacagtgcgttatcagaa
gi|13 : gatcattgaggagaaagaA-T-C---A-GT-AAC-GCTG--GGCGAATCAGT-TGTAATGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCTCATTC--ATG-GC---------------GTTTTACACA------AG------AGA---AGATAATAT------CGGGAAGAAAAATGTT----AAATTTCTTTTA
gi|14 : c--CGTCGTTTGAAGTAATTTTCGAA-AGT-AC-TA-CCTTATAACATGGAAC-AAT-T-A-CGC-CGATCACGGTAAT
gi|15 : CACCTAG-GG-TAA-T-C---A-GT-ACC-GCCG--G-TGAATCGGT-TGAAGAGTC--GG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCACATTaagtagaacgattctatcaatgaatcaaattgcacatt
gi|16 : cTCACCGAT-GG-TAA-T-C---A-GT-AA--GTTG--A-CA---------GTAACGCCGTAT----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--A
gi|17 : tT-AT-GAAAAAATT-ACAT-CG-CT--GG--TACGACGCAC-AATAAG--TCTATC-GATCGT--ATCGTTTAT
gi|18 : GA-CATACA-CTCGC-ATAAACATAAACTCA-TTTCATAAACAACGATT--GGAAAAT
gi|19 : -CA-TCCCGTAACATGGAAC-AGTATAA-CGC-TGATCACAGTAATTTCT
gi|2 : TCACGAAGTGG-TAA-T-C---A-GT-AAC-GCCCCTG-CGGATCGGTATGTAACGCC---GCTCTATTAC-CGCGTCCT--TGT--GCAC---A-CCCAATTC--ATA-GCAATCATTTCCAAGCGGTTTT---CG------ATAAGAGAAGT---AG---ATGT------CGGCAAATAAAATGTC----GAATTGTTTTC-----------------------------AAAT-A----AG-CT--A---CACGAAA-AC-AA-AA-----TACT-AA---------GTTTATCAATGATACCTGAGTTAAGCTT--TGTTGGTTT--TTAA-GAT----CATTTAGGAGAAAT----CACAAGGTTAGT-G-AAAAATGCATCG--GTAGAAGTTTCT-AAAGTAGA------TTT---TTACAAATCACAGGTTATGTAGTTCAA-ACAAACA
gi|2 : AAATCACAGGTTATGTAGTTC----------AAACA-AACAGGTATCACAATACAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CATCATAACACGGAAC-AAG-A-A-CGC-CTATCACGGTAATAACTTAggtatcacaatacatcgtcttttgaagtcattttcgaaagtaacacatcataacacggaacaagaacgcctatcacggtaataacttatacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|20 : tcacgaagtggtaatcagtaacgcccctgcggatcggtatgtaacgccgctctattaccgcgtccttgtgcacacccaattcatagcaatcatttccaagcggttttcgataagagaagtagatgtcggcaaataaaatgtcgaattgttttcaaataagctacacgaaaacaaaatactaagtttatcaatgatacctgagttaagctttgttggtttttaagatcatttaggagaaatcacaaggttagtgaaaaatgcatcggtagaagtttctaaagtagatttttac-CA-TCCCGTAACATGGA-C-AGTAT-AACGC-TGATCACAGTAATTTCTtacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|3 : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCA--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GT----------------------AGC---AG---ATAC------CGGGAAATAAAACATC----TCATTTCTTTCAATTT----GGT-TA-GAAT-AT-AAAACAAGT-ACAT-AA-CT--GG--TACGAGGCAC-AGTAAG--TCTATT-GATCGT--ATCGTTTATCGACGATACCTGAATTTAGCTT--CATT----C--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACATAGA------TTT---TTACAAATTACAGG-CACGAA-CTCAC-ATAAACATGAACTCA-T---------------T--GGAAAATCACATTTT-TGTTGTTT----------AAACA-AACAAGTTTTATAACATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-AGATCACGGTAATTTCTTAC
gi|4 : ATCACAAAC-GG-TAA-T-C---A-GT-AAT-ACAG--G-CGA---------------------------------GTAAT--TGC--A-AC---A-CCGCATTC--ACG-GC---------------GTTTTA--CAGGAATGA-------AGT---AG---ATAC------CGG-AAGTAAAACATC----CCATTTCTTTGAAATG----AGT-TA-TAAT-AT-GAAAAAAAT-ATAT-AG-TT--GG--TAAGAGGCAC-AATAGG--TCTATT-GATCGT--ATCGTTTATAGATAATACCTGATTTTAGCTA--CGTT----TTATTCAGGATAAAGT-----------------CACAAGGTTGATGG-AAAAATGCTTCG--GAAGAAGTTTCT-GACAAAGA------ATG---CTTCAAATCACAGG-CACATA-CTCAC-ATAAAAATGAACTCA-TTTCATAAACAACGA-TG-GGAAAATCATATTTG-TGTTGTTC----------AAACA-AACCGATTTTACAATATAT--CGTCCTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCATAAC
gi|5 : GAG-GG-TA--T-C---A-GT-AAC-CGCG--G-CGA-TCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CAGCATTTTAACGAGA---------------G---------------A-------AGC---AG---ATAC------CGGGAAATAATACGTC----TCATTTCTTTCAAATG----AGC-TA-CAAT-AT--AAAAATAT-ACAT-AG-CT--GG--TATGAGGTA
gi|5 : GA-CAT----G-----------------CACAAAGTTGAT-GGAAAAATGCATTG--AAAGAAGTTTCT-AACATAGA------TTT---TTACAAATCACAGA-CACATA-CTCAC-ATAAACATGATGTCA-TTTCATAAACAACAATT--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACCGGTTTTACAATATAT--CGTCGTTTGAAGTCATTTTCGAA-AGTAAA-TG-CCCTGTAACtcattcaggagaaagacatgcacaaagttgatggaaaaatgcattgaaagaagtttctaacatagatttttacaaatcacagacacatactcacataaacatgatgtcatttcataaacaacaattggaaaatcacatttttgttgttcaaacaaaccggttttacaatatatcgtcgtttgaagtcattttcgaaagtaaatgccctgtaac
gi|6 : gagggtatcagtaaccgcggcgatcggttgtaacgccagattccggtaattgtaacacagcattttaacgagagaagcagataccgggaaataatacgtctcatttctttcaaatgagctacaatataaaaatatacatagctggtatgaggtatcattcaggagaaaCGCCGAG-GG-TAAATGC---ATGT-GTTTGCTA--G-TGAATCGGT-TGTAACGCC--GA----ACT-CGCG-G--------------C---A-T----TTC--ACG--C---------------GTTT-----AG-----A-------AGC---AG---ATAC------CGGTTACCAAAACATC----CAATTTCTCTCAAATG----AGC-TA-CAAT-CTCGGAAAAAAT-ACAT-AG-CT--GGTATACGAGGC--------------ATT-GATCG---------TATCGATGATACTTGATTTTTGTTT--TATC----T-----A-G-------------------------AGAAAGTCG-T-G------TGC-TTGATGAAGATGTTTCA-AGCGTAGATTTTTTTTT---TTACATATTACAGA----------CAC-ATAAACATGGACTTT-GTTCATAAA
gi|7 : ttgtcagatcagtataACCAAA-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATTGGT-TGTAACCCC--AG----ATT-C-AG-GTAATATTGT--A-AC---A-CTGCATTC--ACA-GC---------------ATTTTACACA------AGAGA---AGC---AG---ATAC------CGGCAAATAAAACATCATTCTCATTTCTTTCAAATGTTAGAGC-TA-CAAT-AT-GAAAAAAAT-ACAG-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCAT--AACATTTATCAACGATACCTGATTTGAGCTT--CGTT----T--TTGA-GAT----C-----------------
gi|8 : CACCGAG-GG-TAA-T-C---A-GT-AAC-ACCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-ACTCGATCCGCAAAC--ACG-GC---------------GTTTTG--CACGAGAGA-------AGC---AG---ATAC------CGGGAAGTAAATCATC----CCATTTCTTTCAAATG----ATC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAGACTTTATT-GATCGT--ATCGTTTATCGATAATACCTGAGTTTATCTT--CGTT----T--TAGA-CAT----C-----------------attcaggagaaagacacaaggtt
gi|9 : CACCGAA-AG-TAA-T-C---A-GT-AAT-GTTG--G-TGAATTGGT-TGTAACGCC--GA----ATT-C------------------AC---A-C---ATTT--A-----------------------------G------A-------AGC---AG---ATAC------CGGTTACTAAAACATC----A-ATTTCTCTCAAAAG----AGC-TA-CAAT-CT-GAAAA-AAT-ACAT-GG-TT--GG--AGCGAGGCAC-TATAAG--TTAGTT-GATCGT--ATTGTTTATCCATGATACCAGATTTTTGCTT--TGTT----T--TTTA-GAT----C-----------------att
Alignments
lowQualScore : 888888888888888888888888888888888888888 111111 111111 11 1111 5555555555555555555555 1 111111 111 11 2222 3333333333 222
lowQualScore : 3 3 3 3 555 3 3 3 44 3 0 3 77777777 6 3 3 0 44 44 3 555 3 0 1 44 3 222222222222222222222222222222222222222 666 666 000000 5 2 111111 0 8888 4 8 3 3 3 3 3 55 55 4 00 4 66 0 66 0000 66 0 4 6666666666666666666666 0 1 55 5 77 5 666666 000 1 11 3 5 5 0 5 0000 0 6 5555555555 8 0 3 99 1 5 5 4 4 5 111 5 5
lowQualScore : . . . . ... . . . .. . . . ........ . . . . .. .. . ... . . . .. . ....................................... ... ... ...... . . ...... . .... . . . . . . . .. .. . .. . .. . .. .... .. . . ...................... . . .. . .. . ...... ... . .. . . . . . .... . . .......... . . . .. . . . . . . ... . .
lowQualScore : 6 3 1 1 444 1 1 1 22 1 4 1 22222222 2 1 1 4 22 22 1 444 1 8 5 66 6 999999999999999999999999999999999999999 444 444 555555 8 5 777777 9 5555 0 0 6 6 6 6 6 00 00 0 66 4 11 2 99 6666 99 1 4 8888888888888888888888 1 4 99 1 99 7 444444 000 7 55 1 0 0 1 7 2222 8 7 0000000000 0 6 8 22 5 7 7 4 4 7 333 7 7
consensus : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA-T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
Reference ( family-3342 ) : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA-T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
gi|1 : CACCAAG-GGGTAA-T-C---A-GTTAAC-GCCG--G-CGAATCAGT-T---ACACG--AG----A--------G-AA----GC--A-GA---A-CCG---------G-GA---------------GTTT----CA------A-------AAC---AT---ATAT------------ATA-----------TCATT-CTTTCAAATA----AGCATAACAATTAT-GAAAACAATTACAT-GG-CTTTGG--TTCGAGGCACCAATAAGG-TCTACTCGATCGTTTATCGTTTATCGATAATACCTTATTTTAGCCTCCCG-T----T--CTGA-GAT----CATTCAATGAGAAAGTCACACGAGGTTGAT-A-GAAAA-------------AAATTTCTAAACAAAGA------TTTAAAAAAAAAAT-ACAGG--ACATA-CTCTCTATAAAC-TGAACTAA-TTTCATAAACAACGA-TCGGAAAAATC---TTTT-T-TTGT
gi|1 : ctttaTTTT-TGTTGTTTGTGTGTATCAAAACACAACAGGCTT-ACAATATATATCCTCTTTTGAAGTCATTTCGGAACAGT-AACCACCCCCGCACAATGGAACAAGT-TGA-CGCGCGATCACGGTAATTTCTTcttttttgttttttttttttgttgtttgtgtgtatcaaaacacaacaggcttacaatatatatcctcttttgaagtcatttcggaacagtaaccacccccgcacaatggaacaagttgacgcgcgatcacggtaatttctttcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|10 : ctttacaccaaggggtaatcagttaacgccggcgaatcagttacacgagagaagcagaaccgggagtttcaaaacatatatatatcattctttcaaataagcataacaattatgaaaacaattacatggctttggttcgaggcaccaataaggtctactcgatcgtttatcgtttatcgataataccttattttagcctcccgttctgagatcattcaatgagaaagtcacacgaggttgatagaaaaaaatttctaaacaaagatttaaaaaaaaaatacaggacatactctctataaactgaactaatttcataaacaacgatcggaaaaatctttttttgtcttttttgtttttttG-TAA-T-CCCAA-GT-AAC-GCCA--C-CGAACCGGT-TGTAACGCC--AG----TTTTC-CG-GTAAT--TGTTGA-AC---A-CCGAATTC--ACG-GT---------------GATTT----A------A-------AGCGATAG---ATGCAGACAATGGTAAAGTAAACATC----CCATTGCATTCAAA-G----AGA-TAACAAT-AT-GGAAAAAAT-ACATGAGACT--GG--TACGAGGCAC-AAtcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|11 : ccggtgtGTCATTTTCAAA-AGT-AA-CA-CCAAGTAACATGGAAC-AGT-A-A-CGC-CGATCACGGTAATTTCTTACc
gi|12 : -----------------CAAAAGTTTGACAG-AGAAGTGCATCT--GAAGATGTTTCT-AACGTAGA------TTT---TTACAAGTCACAGG-TACATA-CTCAA-ATAAACATG-ATTCATTTTCATCAATAACGA-T--TGAAAAatagaaggatttaaccatcaatcaaattaaatattgtttcagacgaagacagtaaatcccaactatagatgacagtgcgttatcagaa
gi|13 : gatcattgaggagaaagaA-T-C---A-GT-AAC-GCTG--GGCGAATCAGT-TGTAATGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCTCATTC--ATG-GC---------------GTTTTACACA------AG------AGA---AGATAATAT------CGGGAAGAAAAATGTT----AAATTTCTTTTA
gi|14 : c--CGTCGTTTGAAGTAATTTTCGAA-AGT-AC-TA-CCTTATAACATGGAAC-AAT-T-A-CGC-CGATCACGGTAAT
gi|15 : CACCTAG-GG-TAA-T-C---A-GT-ACC-GCCG--G-TGAATCGGT-TGAAGAGTC--GG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCACATTaagtagaacgattctatcaatgaatcaaattgcacatt
gi|16 : cTCACCGAT-GG-TAA-T-C---A-GT-AA--GTTG--A-CA---------GTAACGCCGTAT----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--A
gi|17 : tT-AT-GAAAAAATT-ACAT-CG-CT--GG--TACGACGCAC-AATAAG--TCTATC-GATCGT--ATCGTTTAT
gi|18 : GA-CATACA-CTCGC-ATAAACATAAACTCA-TTTCATAAACAACGATT--GGAAAAT
gi|19 : -CA-TCCCGTAACATGGAAC-AGTATAA-CGC-TGATCACAGTAATTTCT
gi|2 : TCACGAAGTGG-TAA-T-C---A-GT-AAC-GCCCCTG-CGGATCGGTATGTAACGCC---GCTCTATTAC-CGCGTCCT--TGT--GCAC---A-CCCAATTC--ATA-GCAATCATTTCCAAGCGGTTTT---CG------ATAAGAGAAGT---AG---ATGT------CGGCAAATAAAATGTC----GAATTGTTTTC-----------------------------AAAT-A----AG-CT--A---CACGAAA-AC-AA-AA-----TACT-AA---------GTTTATCAATGATACCTGAGTTAAGCTT--TGTTGGTTT--TTAA-GAT----CATTTAGGAGAAAT----CACAAGGTTAGT-G-AAAAATGCATCG--GTAGAAGTTTCT-AAAGTAGA------TTT---TTACAAATCACAGGTTATGTAGTTCAA-ACAAACA
gi|2 : AAATCACAGGTTATGTAGTTC----------AAACA-AACAGGTATCACAATACAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CATCATAACACGGAAC-AAG-A-A-CGC-CTATCACGGTAATAACTTAggtatcacaatacatcgtcttttgaagtcattttcgaaagtaacacatcataacacggaacaagaacgcctatcacggtaataacttatacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|20 : tcacgaagtggtaatcagtaacgcccctgcggatcggtatgtaacgccgctctattaccgcgtccttgtgcacacccaattcatagcaatcatttccaagcggttttcgataagagaagtagatgtcggcaaataaaatgtcgaattgttttcaaataagctacacgaaaacaaaatactaagtttatcaatgatacctgagttaagctttgttggtttttaagatcatttaggagaaatcacaaggttagtgaaaaatgcatcggtagaagtttctaaagtagatttttac-CA-TCCCGTAACATGGA-C-AGTAT-AACGC-TGATCACAGTAATTTCTtacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|3 : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCA--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GT----------------------AGC---AG---ATAC------CGGGAAATAAAACATC----TCATTTCTTTCAATTT----GGT-TA-GAAT-AT-AAAACAAGT-ACAT-AA-CT--GG--TACGAGGCAC-AGTAAG--TCTATT-GATCGT--ATCGTTTATCGACGATACCTGAATTTAGCTT--CATT----C--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACATAGA------TTT---TTACAAATTACAGG-CACGAA-CTCAC-ATAAACATGAACTCA-T---------------T--GGAAAATCACATTTT-TGTTGTTT----------AAACA-AACAAGTTTTATAACATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-AGATCACGGTAATTTCTTAC
gi|4 : ATCACAAAC-GG-TAA-T-C---A-GT-AAT-ACAG--G-CGA---------------------------------GTAAT--TGC--A-AC---A-CCGCATTC--ACG-GC---------------GTTTTA--CAGGAATGA-------AGT---AG---ATAC------CGG-AAGTAAAACATC----CCATTTCTTTGAAATG----AGT-TA-TAAT-AT-GAAAAAAAT-ATAT-AG-TT--GG--TAAGAGGCAC-AATAGG--TCTATT-GATCGT--ATCGTTTATAGATAATACCTGATTTTAGCTA--CGTT----TTATTCAGGATAAAGT-----------------CACAAGGTTGATGG-AAAAATGCTTCG--GAAGAAGTTTCT-GACAAAGA------ATG---CTTCAAATCACAGG-CACATA-CTCAC-ATAAAAATGAACTCA-TTTCATAAACAACGA-TG-GGAAAATCATATTTG-TGTTGTTC----------AAACA-AACCGATTTTACAATATAT--CGTCCTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCATAAC
gi|5 : GAG-GG-TA--T-C---A-GT-AAC-CGCG--G-CGA-TCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CAGCATTTTAACGAGA---------------G---------------A-------AGC---AG---ATAC------CGGGAAATAATACGTC----TCATTTCTTTCAAATG----AGC-TA-CAAT-AT--AAAAATAT-ACAT-AG-CT--GG--TATGAGGTA
gi|5 : GA-CAT----G-----------------CACAAAGTTGAT-GGAAAAATGCATTG--AAAGAAGTTTCT-AACATAGA------TTT---TTACAAATCACAGA-CACATA-CTCAC-ATAAACATGATGTCA-TTTCATAAACAACAATT--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACCGGTTTTACAATATAT--CGTCGTTTGAAGTCATTTTCGAA-AGTAAA-TG-CCCTGTAACtcattcaggagaaagacatgcacaaagttgatggaaaaatgcattgaaagaagtttctaacatagatttttacaaatcacagacacatactcacataaacatgatgtcatttcataaacaacaattggaaaatcacatttttgttgttcaaacaaaccggttttacaatatatcgtcgtttgaagtcattttcgaaagtaaatgccctgtaac
gi|6 : gagggtatcagtaaccgcggcgatcggttgtaacgccagattccggtaattgtaacacagcattttaacgagagaagcagataccgggaaataatacgtctcatttctttcaaatgagctacaatataaaaatatacatagctggtatgaggtatcattcaggagaaaCGCCGAG-GG-TAAATGC---ATGT-GTTTGCTA--G-TGAATCGGT-TGTAACGCC--GA----ACT-CGCG-G--------------C---A-T----TTC--ACG--C---------------GTTT-----AG-----A-------AGC---AG---ATAC------CGGTTACCAAAACATC----CAATTTCTCTCAAATG----AGC-TA-CAAT-CTCGGAAAAAAT-ACAT-AG-CT--GGTATACGAGGC--------------ATT-GATCG---------TATCGATGATACTTGATTTTTGTTT--TATC----T-----A-G-------------------------AGAAAGTCG-T-G------TGC-TTGATGAAGATGTTTCA-AGCGTAGATTTTTTTTT---TTACATATTACAGA----------CAC-ATAAACATGGACTTT-GTTCATAAA
gi|7 : ttgtcagatcagtataACCAAA-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATTGGT-TGTAACCCC--AG----ATT-C-AG-GTAATATTGT--A-AC---A-CTGCATTC--ACA-GC---------------ATTTTACACA------AGAGA---AGC---AG---ATAC------CGGCAAATAAAACATCATTCTCATTTCTTTCAAATGTTAGAGC-TA-CAAT-AT-GAAAAAAAT-ACAG-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCAT--AACATTTATCAACGATACCTGATTTGAGCTT--CGTT----T--TTGA-GAT----C-----------------
gi|8 : CACCGAG-GG-TAA-T-C---A-GT-AAC-ACCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-ACTCGATCCGCAAAC--ACG-GC---------------GTTTTG--CACGAGAGA-------AGC---AG---ATAC------CGGGAAGTAAATCATC----CCATTTCTTTCAAATG----ATC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAGACTTTATT-GATCGT--ATCGTTTATCGATAATACCTGAGTTTATCTT--CGTT----T--TAGA-CAT----C-----------------attcaggagaaagacacaaggtt
gi|9 : CACCGAA-AG-TAA-T-C---A-GT-AAT-GTTG--G-TGAATTGGT-TGTAACGCC--GA----ATT-C------------------AC---A-C---ATTT--A-----------------------------G------A-------AGC---AG---ATAC------CGGTTACTAAAACATC----A-ATTTCTCTCAAAAG----AGC-TA-CAAT-CT-GAAAA-AAT-ACAT-GG-TT--GG--AGCGAGGCAC-TATAAG--TTAGTT-GATCGT--ATTGTTTATCCATGATACCAGATTTTTGCTT--TGTT----T--TTTA-GAT----C-----------------att
blockSeqs : T . A G CCA T . T CT G A GCTCT T G C AT TG C TCG T A TA A AATCATTTCCAAGCGGTTTTCGATAAGAGA GAT ATA AGACAA T A ATTCTC TTAG . A . C . G A . TA . AC . . . GGTT TA G CATTTAGGAGAAAT A GA A AT . TTTTTT . C TT A G . T TT A . . C . G . A . . . ATA A .
blockSeqs : . . . . . . . . . . . GTAT A . . . . . . . C . . GTTTTACAGGAATGA . . . G G CC . . . . . . . . . . . . . . . . . . AAAGT G A A . . . . C T A . . . TG . . . T . T . . . . . AT . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . ATTTTACACAAGAGA . . . C G AA . . . . . . . . . . . . . . . . . . C . A A . . . . T C G . . . TT . . . T . T . . . . . A . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . GTTTTGCACGAGAGA . . . G A GA . . . . . . . . . . . . . . . . . . G . A T . . . . C C G . . . T . . . T . C . . . . . T . .
blockSeqs : . . . . . . . . . . . GG . . . . . . . . A . . GTTTTACACAAG . . . G A TC . . . . . . . . . . . . . . . . . . C . A A . . . . C C A . . . T . . G . . . . . A . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . GATTTAA . . . T G CC . . . . . . . . . . . . . . . . . . C . . . . . . . T C A . . . . . . . . T . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . GTTTAGA . . . C A TC . . . . . . . . . . . . . . . . . . C . . . . . .
blockSeqs : . . . . . . . . . . . GA . . . . . . . . C . . GT . . . G A CA . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . GA . . . T A CC . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . AG . . . . . . . . C . . GA . . . . A A . . . . . . .
blockSeqs : . . . . . . . . . . GA . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . .
blockSeqCons : GTTTTAAGGA***************************** ** ** ** ** C********************* *** C* TT** ********** ** N**
originalCons : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GC---------------GTTTT---CA------A-------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GAT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGA-T--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGT-T-A-CGC-CGATCACGGTAATTTCTTAC
finalCons : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACG-GCGTTTTAAGGA-----------------------------AGC---AG---ATAC------CGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-TA-CAAT-AT-GAAAAAAAT-ACAT-AG-CT--GG--TACGAGGCAC-AATAAG--TCTATT-GATCGT--ATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----T--TTGA-GATC---------------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGGC-ACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGATT--GGAAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAAC-AGTN--A-CGC-CGATCACGGTAATTTCTTAC
Alignments
lowQualScore : 7777777777777777777777777777777777777777 111111 1111 5555555555555555555555 11 111111 111 11 3333333333 111111
lowQualScore : 3 3 3 3 555 3 3 3 44 3 0 3 77777777 6 3 3 44 44 3 555 3 0 1 44 1 3333333333333333333333333333333333333333 7777 5 2 111111 0 8888 4 4 4 3 3 3 3 3 55 55 3 8888 4 66 0 66 0000 66 0 4 6666666666666666666666 0 5 11 5 77 5 666666 000 1 11 3 5 5 0 77 6 0 6 5555555555 8 0 3 99 1 5 5 4 4 999999 5
lowQualScore : . . . . ... . . . .. . . . ........ . . . .. .. . ... . . . .. . ........................................ .... . . ...... . .... . . . . . . . . .. .. . .... . .. . .. .... .. . . ...................... . . .. . .. . ...... ... . .. . . . . .. . . . .......... . . . .. . . . . . ...... .
lowQualScore : 6 3 1 1 444 1 1 1 22 1 4 1 22222222 2 1 1 22 22 1 444 1 8 5 66 4 9999999999999999999999999999999999999999 7777 8 5 777777 9 5555 0 0 0 6 6 6 6 6 00 00 6 9999 4 11 2 99 6666 99 1 4 8888888888888888888888 1 7 66 1 99 7 444444 000 7 55 1 0 0 1 44 7 8 7 0000000000 0 6 8 22 5 7 7 4 4 000000 7
consensus : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACGGC---------------GTTTT-----A----AG-G------AA----GCAGATACCGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-T-A-CAA-TAT-GAAAAAAA-TACAT-AG-C--TGG--TACGAGGCA-CAATAA-G--TCTA-TTGATCG--TATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----TT--TGAG-AT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGATTGG-AAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAACAG--TA--ACGC-CGATCACGGTAATTTCTTAC
Reference ( family-3342 ) : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACGGC---------------GTTTT-----A----AG-G------AA----GCAGATACCGGNAAATAAAACGTC----CCATTTCTTTCAAATG----AGC-T-A-CAA-TAT-GAAAAAAA-TACAT-AG-C--TGG--TACGAGGCA-CAATAA-G--TCTA-TTGATCG--TATCGTTTATCGATGATACCTGATTTTAGCTT--CGTT----TT--TGAG-AT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACGTAGA------TTT---TTACAAATCACAGG-CACGTA-CTCAC-ATAAACATGAACTCA-TTTCATAAACAACGATTGG-AAAATCACATTTT-TGTTGTTC----------AAACA-AACAGGTTTTACAATATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAACAG--TN--ACGC-CGATCACGGTAATTTCTTAC
gi|1 : CACCAAG-GGGTAA-T-C---A-GTTAAC-GCCG--G-CGAATCAGT-T---ACACG--AG----A------G---AA----GC--A-GA---A-CCG---------GGA---------------GTTTC-----A--------------AA----ACATATAT------ATA-----------TCA-TTCTTTCAAATA----AGCATAA-CAATTAT-GAAAACAATTACAT-GG-CTTTGG--TTCGAGGCACCAATAAGG--TCTACTCGATCGTTTATCGTTTATCGATAATACCTTATTTTAGCCTCCCG-T----TC--TGAG-AT----CATTCAATGAGAAAGTCACACGAGGTTGAT-A-GAAAA-------------AAATTTCTAAACAAAGA------TTTAAAAAAAAAAT-ACAGG--ACATA-CTCTCTATAAAC-TGAACTAA-TTTCATAAACAACGATCGGAAAAATC---TTTT-T-TTGT
gi|1 : ctttaTTTT-TGTTGTTTGTGTGTATCAAAACACAACAGGCTT-ACAATATATATCCTCTTTTGAAGTCATTTCGGAACAGT-AACCACCCCCGCACAATGGAACAAGTTG--ACGCGCGATCACGGTAATTTCTTcttttttgttttttttttttgttgtttgtgtgtatcaaaacacaacaggcttacaatatatatcctcttttgaagtcatttcggaacagtaaccacccccgcacaatggaacaagttgacgcgcgatcacggtaatttctttcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|10 : ctttacaccaaggggtaatcagttaacgccggcgaatcagttacacgagagaagcagaaccgggagtttcaaaacatatatatatcattctttcaaataagcataacaattatgaaaacaattacatggctttggttcgaggcaccaataaggtctactcgatcgtttatcgtttatcgataataccttattttagcctcccgttctgagatcattcaatgagaaagtcacacgaggttgatagaaaaaaatttctaaacaaagatttaaaaaaaaaatacaggacatactctctataaactgaactaatttcataaacaacgatcggaaaaatctttttttgtcttttttgtttttttG-TAA-T-CCCAA-GT-AAC-GCCA--C-CGAACCGGT-TGTAACGCC--AG----TTTTC-CG-GTAAT--TGTTGA-AC---A-CCGAATTC--ACGGT---------------GATTT-----A----AA-GCGATAGAT----GCAGACAATGGTAAAGTAAACATC----CCATTGCATTCAAA-G----AGA-T-AACAA-TAT-GGAAAAAA-TACATGAGAC--TGG--TACGAGGCA-CAAtcattagaaccggttttcgtacatttttttcagaacgaaggacagtaaatctcagatatacgatgacagcgcgttatcagaa
gi|11 : ccggtgtGTCATTTTCAAA-AGT-AA-CA-CCAAGTAACATGGAACAG--TA--ACGC-CGATCACGGTAATTTCTTACc
gi|12 : -----------------CAAAAGTTTGACAG-AGAAGTGCATCT--GAAGATGTTTCT-AACGTAGA------TTT---TTACAAGTCACAGG-TACATA-CTCAA-ATAAACATG-ATTCATTTTCATCAATAACGATTGA-AAAatagaaggatttaaccatcaatcaaattaaatattgtttcagacgaagacagtaaatcccaactatagatgacagtgcgttatcagaa
gi|13 : gatcattgaggagaaagaA-T-C---A-GT-AAC-GCTG--GGCGAATCAGT-TGTAATGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCTCATTC--ATGGC---------------GTTTTACAC-A----AGAG------AA----GATAATATCGGGAAGAAAAATGTT----AAATTTCTTTTA
gi|14 : c--CGTCGTTTGAAGTAATTTTCGAA-AGT-AC-TA-CCTTATAACATGGAACAA--TT--ACGC-CGATCACGGTAAT
gi|15 : CACCTAG-GG-TAA-T-C---A-GT-ACC-GCCG--G-TGAATCGGT-TGAAGAGTC--GG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCACATTaagtagaacgattctatcaatgaatcaaattgcacatt
gi|16 : cTCACCGAT-GG-TAA-T-C---A-GT-AA--GTTG--A-CA---------GTAACGCCGTAT----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--A
gi|17 : t-TAT-GAAAAAAT-TACAT-CG-C--TGG--TACGACGCA-CAATAA-G--TCTA-TCGATCG--TATCGTTTAT
gi|18 : GA-CATACA-CTCGC-ATAAACATAAACTCA-TTTCATAAACAACGATTGG-AAAAT
gi|19 : -CA-TCCCGTAACATGGAACAGTATA--ACGC-TGATCACAGTAATTTCT
gi|2 : TCACGAAGTGG-TAA-T-C---A-GT-AAC-GCCCCTG-CGGATCGGTATGTAACGCC---GCTCTATTAC-CGCGTCCT--TGT--GCAC---A-CCCAATTC--ATAGCAATCATTTCCAAGCGGTTTTCGAT-A----AGAG------AA----GTAGATGTCGGCAAATAAAATGTC----GAATTGTTTTC------------------------------AAA-TA----AG-C--TA---CACGAAA-A-CAA-AA------TA-CTAA---------GTTTATCAATGATACCTGAGTTAAGCTT--TGTTGGTTTT--TAAG-AT----CATTTAGGAGAAAT----CACAAGGTTAGT-G-AAAAATGCATCG--GTAGAAGTTTCT-AAAGTAGA------TTT---TTACAAATCACAGGTTATGTAGTTCAA-ACAAACA
gi|2 : AAATCACAGGTTATGTAGTTC----------AAACA-AACAGGTATCACAATACAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CATCATAACACGGAACAA--GA--ACGC-CTATCACGGTAATAACTTAggtatcacaatacatcgtcttttgaagtcattttcgaaagtaacacatcataacacggaacaagaacgcctatcacggtaataacttatacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|20 : tcacgaagtggtaatcagtaacgcccctgcggatcggtatgtaacgccgctctattaccgcgtccttgtgcacacccaattcatagcaatcatttccaagcggttttcgataagagaagtagatgtcggcaaataaaatgtcgaattgttttcaaataagctacacgaaaacaaaatactaagtttatcaatgatacctgagttaagctttgttggtttttaagatcatttaggagaaatcacaaggttagtgaaaaatgcatcggtagaagtttctaaagtagatttttac-CA-TCCCGTAACATGGA-CAG--TATAACGC-TGATCACAGTAATTTCTtacaccgataacaagcatttacgtagaacggttctatccatgaaattctccaaatccatttcatcagaaggtagtagatcccaatatagatgacagcgcgttatcagaac
gi|3 : ATCACCGAG-GG-TAA-T-C---A-GT-AAC-GCCA--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CCGCATTC--ACGGC---------------GT------------------------A----GCAGATACCGGGAAATAAAACATC----TCATTTCTTTCAATTT----GGT-T-A-GAA-TAT-AAAACAAG-TACAT-AA-C--TGG--TACGAGGCA-CAGTAA-G--TCTA-TTGATCG--TATCGTTTATCGACGATACCTGAATTTAGCTT--CATT----CT--TGAG-AT----C-----------------CACAAGGTTGAT-G-AAAAATGCATCG--GAAGAAGTTTCT-AACATAGA------TTT---TTACAAATTACAGG-CACGAA-CTCAC-ATAAACATGAACTC----------------ATTGG-AAAATCACATTTT-TGTTGTTT----------AAACA-AACAAGTTTTATAACATAT--CGTCTTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCGTAACATGGAACAG--TT--ACGC-AGATCACGGTAATTTCTTAC
gi|4 : ATCACAAAC-GG-TAA-T-C---A-GT-AAT-ACAG--G-CGA---------------------------------GTAAT--TGC--A-AC---A-CCGCATTC--ACGGC---------------GTTTT-----AC---AG-G------AATGAAGTAGATACCGG-AAGTAAAACATC----CCATTTCTTTGAAATG----AGT-T-A-TAA-TAT-GAAAAAAA-TATAT-AG-T--TGG--TAAGAGGCA-CAATAG-G--TCTA-TTGATCG--TATCGTTTATAGATAATACCTGATTTTAGCTA--CGTT----TTATTCAGGATAAAGT-----------------CACAAGGTTGAT-GGAAAAATGCTTCG--GAAGAAGTTTCT-GACAAAGA------ATG---CTTCAAATCACAGG-CACATA-CTCAC-ATAAAAATGAACTCA-TTTCATAAACAACGATGGG-AAAATCATATTTG-TGTTGTTC----------AAACA-AACCGATTTTACAATATAT--CGTCCTTTGAAGTCATTTTCGAA-AGT-AA-CA-CCCCATAAC
gi|5 : GAG-GG-TA--T-C---A-GT-AAC-CGCG--G-CGA-TCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-AC---A-CAGCATTTTAACG---------------------------A----GA-G------AA----GCAGATACCGGGAAATAATACGTC----TCATTTCTTTCAAATG----AGC-T-A-CAA-TAT--AAAAATA-TACAT-AG-C--TGG--TATGAGGTA-
gi|5 : GAC-AT----G-----------------CACAAAGTTGAT-GGAAAAATGCATTG--AAAGAAGTTTCT-AACATAGA------TTT---TTACAAATCACAGA-CACATA-CTCAC-ATAAACATGATGTCA-TTTCATAAACAACAATTGG-AAAATCACATTTT-TGTTGTTC----------AAACA-AACCGGTTTTACAATATAT--CGTCGTTTGAAGTCATTTTCGAA-AGTAAA-TG-CCCTGTAACtcattcaggagaaagacatgcacaaagttgatggaaaaatgcattgaaagaagtttctaacatagatttttacaaatcacagacacatactcacataaacatgatgtcatttcataaacaacaattggaaaatcacatttttgttgttcaaacaaaccggttttacaatatatcgtcgtttgaagtcattttcgaaagtaaatgccctgtaac
gi|6 : gagggtatcagtaaccgcggcgatcggttgtaacgccagattccggtaattgtaacacagcattttaacgagagaagcagataccgggaaataatacgtctcatttctttcaaatgagctacaatataaaaatatacatagctggtatgaggtatcattcaggagaaaCGCCGAG-GG-TAAATGC---ATGT-GTTTGCTA--G-TGAATCGGT-TGTAACGCC--GA----ACT-CGCG-G--------------C---A-T----TTC--ACG-C---------------GTTT------------A-G------AA----GCAGATACCGGTTACCAAAACATC----CAATTTCTCTCAAATG----AGC-T-A-CAA-TCTCGGAAAAAA-TACAT-AG-C--TGGTATACGAGGC---------------A-TTGATCG---------TATCGATGATACTTGATTTTTGTTT--TATC----T-----AG--------------------------AGAAAGTCG-T-G------TGC-TTGATGAAGATGTTTCA-AGCGTAGATTTTTTTTT---TTACATATTACAGA----------CAC-ATAAACATGGACTTT-GTTCATAAA
gi|7 : ttgtcagatcagtataACCAAA-GG-TAA-T-C---A-GT-AAC-GCCG--G-CGAATTGGT-TGTAACCCC--AG----ATT-C-AG-GTAATATTGT--A-AC---A-CTGCATTC--ACAGC---------------ATTTT-----ACACAAGAG------AA----GCAGATACCGGCAAATAAAACATCATTCTCATTTCTTTCAAATGTTAGAGC-T-A-CAA-TAT-GAAAAAAA-TACAG-AG-C--TGG--TACGAGGCA-CAATAA-G--TCTA-TTGATCA--TAACATTTATCAACGATACCTGATTTGAGCTT--CGTT----TT--TGAG-AT----C-----------------
gi|8 : CACCGAG-GG-TAA-T-C---A-GT-AAC-ACCG--G-CGAATCGGT-TGTAACGCC--AG----ATT-C-CG-GTAAT--TGT--A-ACTCGATCCGCAAAC--ACGGC---------------GTTTTGCACGA----GA-G------AA----GCAGATACCGGGAAGTAAATCATC----CCATTTCTTTCAAATG----ATC-T-A-CAA-TAT-GAAAAAAA-TACAT-AG-C--TGG--TACGAGGCA-CAATAA-GACTTTA-TTGATCG--TATCGTTTATCGATAATACCTGAGTTTATCTT--CGTT----TT--AGAC-AT----C-----------------attcaggagaaagacacaaggtt
gi|9 : CACCGAA-AG-TAA-T-C---A-GT-AAT-GTTG--G-TGAATTGGT-TGTAACGCC--GA----ATT-C------------------AC---A-C---ATTT--A-------------------------------------G------AA----GCAGATACCGGTTACTAAAACATC----A-ATTTCTCTCAAAAG----AGC-T-A-CAA-TCT-GAAAA-AA-TACAT-GG-T--TGG--AGCGAGGCA-CTATAA-G--TTAG-TTGATCG--TATTGTTTATCCATGATACCAGATTTTTGCTT--TGTT----TT--TTAG-AT----C-----------------att