lowQualScore : 222
lowQualScore : 2 33 2 4 2 55 2 33 777 6
lowQualScore : . .. . . . .. . .. ... .
lowQualScore : 5 44 5 4 5 99 5 77 000 0
consensus : NACCAGGAATTT-CCA--TT-GGGG-G--TGC-A--CAAGACTAAGGCGAGAGG
Reference ( gi|11 ) : GACCAGGAATTT-CCA--TT-GAGG-G--TGC-A--CAAGACTAAGCTAAGGGG
gi|10 : ACCAGGAATTT-CTA--TTAGAGG-G--TGC-A--CAAGACTAA
gi|7 : gtaACCAGGAATTC-CCA--TT-GGGG-G--TGCGG--CAAGACTAAGagacaag
gi|13 : agggccgttacaACCAGGAATTT-CCA--TT-GGGGAA--TGC-A--CAAGACTAgcg
gi|12 : ccttaACCGATAATTT-CCA--TT-AGGG-G--TGT-A--CAAGACTAAGtaa
gi|17 : cgtaACCGAGAATTT-CTA--TT-GGGG-G--TGC-A--CAAgcaac
gi|8 : ggccgtaATCAGGGATTT-TCT--TT-GGGG-G--TGC-A--CACGATTAAGGCGAGAGGt
gi|14 : gccgtaACCAGTAATTT-TCA--TT-GGGG-GG-TGC-A--CAAGGCCAt
gi|5 : cgtaACCAG-AATTT-CCA--TG-GGGG-GGGTGC-A--CAAGACCAAta
gi|16 : ccgtaATCAGGAATTT-C-A--TT-GGGG-G--TGC-A--CCAGAagcaaacaaagggggtgt
gi|9 : gggccgtaACCAGGAGTTT-CCA--TC-AGGG-A--TGC-T--AAAGACTAAat
gi|18 : gggccgtaACCAGGAATTT-CCA--AT-G-GG-G--TGC-agag
gi|4 : agggccgtaCAGGAATTT-CCA--CT-AAGG-G--TGC-ACCCAAGACTAAG
gi|15 : agtcgcagggcgctatagcgtaaccatgCAGGAATTT-CCA--AT-GGGG-G--TGC-A--CAAGGCCAgc
gi|6 : gccgtaaaCAGGAATTT-CCT--TT-GGTG-G--TGC-A--CAAGTCTAAG
gi|1 : cacagggccgtagccatgCAGGAATTTGCCAACCT-AAGG-G--TGC-A--CACGAgcgag
gi|3 : gctccacgcaggcgcgtataacaaaccaggAATTT-CCA--CT-AAGG-G--TGC-A--CAAGACTAAGgttacaataacatgaaacttagagggctgc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): TAATCAGGATTTTCCAAAAGGGGGGGGGGCGGTGCACAATAGACAAGGGGTCTGGGTACCTTTAGGC
Alignments
lowQualScore : 5 55 2 33
lowQualScore : . .. . ..
lowQualScore : 0 99 5 77
consensus : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
Reference ( family-3291 ) : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGAGG
gi|10 : ACCAGGAATTTCTATTAGAGG--GTGC-A--CAAGACTAAAG
gi|11 : gtaACCAGGAATTTCCATTGA-GG--GTGC-A--CAAGACTAAGCTAAGGGGacaag
gi|12 : gACCGATAATTTCCATTAG-GG--GTGT-A--CAAGACTAAGGCAA
gi|13 : cgtaACCAGGAATTTCCATTGG-GGA-ATGC-A--CAAGACTAc
gi|14 : ccttaACCAGTAATTTTCATTGGGGG--GTGC-A--CAAGGCCAtaa
gi|15 : cgtaCAGGAATTTCCAATGG-GG--GTGC-A--CAAGGCCAta
gi|16 : gccgtaaaATCAGGAATTTC-ATTGG-GG--GTGC-A--CCAGA
gi|17 : gggccgtaACCGAGAATTTCTATTGG-GG--GTGC-A--CAAat
gi|18 : ggccgtaACCAGGAATTTCCAAT-G-GG--GTGC-t
gi|3 : agggccgtaAATTTCCACTAA-GG--GTGC-A--CAAGACTAAGG
gi|4 : ggtcgcagggctgtatacgtaaccatatcatgcaatCAGGAATTTCCACTAA-GG--GTGC-ACCCAAGACTAAGGC
gi|5 : agtcgcagggcgctatagcgtaaccatgACCAG-AATTTCCATGGG-GGGGGTGC-A--CAAGACCAAAGCAA
gi|6 : ccgtaCAGGAATTTCCTTTGG-TG--GTGC-A--CAAGTCTAAGGCGAGacaaagggggtgt
gi|7 : cacagggccgtagccatgACCAGGAATTCCCATTGG-GG--GTGCGG--CAAGACTAAGGCG
gi|8 : agggccgttacaATCAGGGATTTTCTTTGG-GG--GTGC-A--CACGATTAAGGCGAGAGG
gi|9 : gccgtaACCAGGAGTTTCCATCAG-GG--ATGC-T--AAAGACTAAAGt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCTCCACGCAGGCGCGTATAACAAACCAGGCAGGAATTTGCCAACCTAAGGGTGCACACGAGTTACAATAACATGAAACTTAGAGGGCTGC
Unaligned ( gi|2 ): TAATCAGGATTTTCCAAAAGGGGGGGGGGCGGTGCACAATAGACAAGGGGTCTGGGTACCTTTAGGC
Alignments
lowQualScore : 5 55 2 33
lowQualScore : . .. . ..
lowQualScore : 0 99 5 77
consensus : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
Reference ( family-3291 ) : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
gi|10 : ACCAGGAATTTCTATTAGAGG--GTGC-A--CAAGACTAAAG
gi|11 : gtaACCAGGAATTTCCATTGA-GG--GTGC-A--CAAGACTAAGCTAAGGGGacaag
gi|12 : gACCGATAATTTCCATTAG-GG--GTGT-A--CAAGACTAAGGCAA
gi|13 : cgtaACCAGGAATTTCCATTGG-GGA-ATGC-A--CAAGACTAc
gi|14 : ccttaACCAGTAATTTTCATTGGGGG--GTGC-A--CAAGGCCAtaa
gi|15 : cgtaCAGGAATTTCCAATGG-GG--GTGC-A--CAAGGCCAta
gi|16 : gccgtaaaATCAGGAATTTC-ATTGG-GG--GTGC-A--CCAGA
gi|17 : gggccgtaACCGAGAATTTCTATTGG-GG--GTGC-A--CAAat
gi|18 : ggccgtaACCAGGAATTTCCAAT-G-GG--GTGC-t
gi|3 : agggccgtaAATTTCCACTAA-GG--GTGC-A--CAAGACTAAGG
gi|4 : ggtcgcagggctgtatacgtaaccatatcatgcaatCAGGAATTTCCACTAA-GG--GTGC-ACCCAAGACTAAGGC
gi|5 : agtcgcagggcgctatagcgtaaccatgACCAG-AATTTCCATGGG-GGGGGTGC-A--CAAGACCAAAGCAA
gi|6 : ccgtaCAGGAATTTCCTTTGG-TG--GTGC-A--CAAGTCTAAGGCGAGacaaagggggtgt
gi|7 : cacagggccgtagccatgACCAGGAATTCCCATTGG-GG--GTGCGG--CAAGACTAAGGCG
gi|8 : agggccgttacaATCAGGGATTTTCTTTGG-GG--GTGC-A--CACGATTAAGGCGAGAGG
gi|9 : gccgtaACCAGGAGTTTCCATCAG-GG--ATGC-T--AAAGACTAAAGt
blockSeqs : G GG G CC
blockSeqs : . A . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
finalCons : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCTCCACGCAGGCGCGTATAACAAACCAGGCAGGAATTTGCCAACCTAAGGGTGCACACGAGTTACAATAACATGAAACTTAGAGGGCTGC
Unaligned ( gi|2 ): TAATCAGGATTTTCCAAAAGGGGGGGGGGCGGTGCACAATAGACAAGGGGTCTGGGTACCTTTAGGC
Alignments
lowQualScore : 5 55 2 33
lowQualScore : . .. . ..
lowQualScore : 0 99 5 77
consensus : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
Reference ( family-3291 ) : NACCAGGAATTTCCATTGG-GG--GTGC-A--CAAGACTAAGGCGAGGGG
gi|10 : ACCAGGAATTTCTATTAGAGG--GTGC-A--CAAGACTAAAG
gi|11 : gtaACCAGGAATTTCCATTGA-GG--GTGC-A--CAAGACTAAGCTAAGGGGacaag
gi|12 : gACCGATAATTTCCATTAG-GG--GTGT-A--CAAGACTAAGGCAA
gi|13 : cgtaACCAGGAATTTCCATTGG-GGA-ATGC-A--CAAGACTAc
gi|14 : ccttaACCAGTAATTTTCATTGGGGG--GTGC-A--CAAGGCCAtaa
gi|15 : cgtaCAGGAATTTCCAATGG-GG--GTGC-A--CAAGGCCAta
gi|16 : gccgtaaaATCAGGAATTTC-ATTGG-GG--GTGC-A--CCAGA
gi|17 : gggccgtaACCGAGAATTTCTATTGG-GG--GTGC-A--CAAat
gi|18 : ggccgtaACCAGGAATTTCCAAT-G-GG--GTGC-t
gi|3 : agggccgtaAATTTCCACTAA-GG--GTGC-A--CAAGACTAAGG
gi|4 : ggtcgcagggctgtatacgtaaccatatcatgcaatCAGGAATTTCCACTAA-GG--GTGC-ACCCAAGACTAAGGC
gi|5 : agtcgcagggcgctatagcgtaaccatgACCAG-AATTTCCATGGG-GGGGGTGC-A--CAAGACCAAAGCAA
gi|6 : ccgtaCAGGAATTTCCTTTGG-TG--GTGC-A--CAAGTCTAAGGCGAGacaaagggggtgt
gi|7 : cacagggccgtagccatgACCAGGAATTCCCATTGG-GG--GTGCGG--CAAGACTAAGGCG
gi|8 : agggccgttacaATCAGGGATTTTCTTTGG-GG--GTGC-A--CACGATTAAGGCGAGAGG
gi|9 : gccgtaACCAGGAGTTTCCATCAG-GG--ATGC-T--AAAGACTAAAGt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): GCTCCACGCAGGCGCGTATAACAAACCAGGCAGGAATTTGCCAACCTAAGGGTGCACACGAGTTACAATAACATGAAACTTAGAGGGCTGC
Unaligned ( gi|2 ): TAATCAGGATTTTCCAAAAGGGGGGGGGGCGGTGCACAATAGACAAGGGGTCTGGGTACCTTTAGGC