lowQualScore : 11111111111111111111111111
lowQualScore : 111 1 111111111 111111111111 333333333 77777777777777777777777777 333333333 11 2222 11111111 2222222222222 111111111 1 11 11111 333333333333
lowQualScore : 1 222 66 777 4 3 777777777 0 111111111111 77 3 000000000 3 0 66 2 5 3 8888 88888888888888888888888888 0 111111111 1 4 88 0000 5 3 2 66 77777777 66 66 4 3333333333333 2 4 2 33 777777777 3 0 1 66 4 8 9 5 77 5 33 33333 5 888888888888 2
lowQualScore : . ... .. ... . . ......... . ............ .. . ......... . . .. . . . .... .......................... . ......... . . .. .... . . . .. ........ .. .. . ............. . . . .. ......... . . . .. . . . . .. . .. ..... . ............ .
lowQualScore : 2 222 11 888 4 3 888888888 9 777777777777 66 6 111111111 2 8 99 5 0 0 0000 00000000000000000000000000 9 777777777 4 0 33 0000 7 0 6 99 44444444 99 11 4 1111111111111 6 4 6 66 888888888 3 7 2 11 4 9 2 0 99 7 66 66666 7 222222222222 5
consensus : AGAATAC---ACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAGC-NGATCTCCGA-C-----ATTTGCCGATCTTT--AATGAGAT-AAGGATTAC-ACGAGCGC-GT---------TAT--TGTGCTATACGTCACAAGTGA--TACAAAAGCAATCGGCTCTN-CAGTAAA----CA-TACCAATGGANGGAGA--TTT---C----A--CA--G-AC---T--TTC-CGNTGCNCCTG-ANGAAATTAGAC---------CNTATAA--TT-TTG-AGCCTTTGATTAGA-AA--TA-ATGCAC--CAT----TAAATGAA-ACTA-----GA----TCTGAAGCTGATNTAGAAGATATT
Reference ( gi|7 ) : AGAATAT---ACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAGC-TGATCTCCGA-C-----ATTTGCCGATCTTT--AATGAGAT-AAGGATTAC-ACGAGTGCCGTATATGATT-TATATTATGCTATACGTCACAAATGA--TACAAAAGCAATCGGTTCTT-CAGTAAA----CA-TACCAATGGATGGAGA--TTT---C----A--CA--G-AC---T--TTA-TGGTGCTCCTG-ATGAAATTAGAC---------CATATCA--TT-TTG-AACCTTTGATTAGA-AA--TA-ATACAC--CAT----TAAATGAA-ACTA-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|8 : AGAATAT---ACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAGC-TGATCTCCGA-C-----ATTTGCCGATCTTT--AATGAGAT-AAGGATTAC-ACGAGTGC-GTATATGATT-TATATTAT-CTATACGTCACAAATGA--TACAAAAGCAATCGGTTCTT-CAGTAAAAA--CA-TACCAATGGATGGAGA--TT----C----A--CA--G-AC---T--TTA-TGGTGCTCCTG-ATGAAATTAGAC---------CATATCA--TT-TTG-AACCTTTGATTAGA-AA--TA-ATACAC--CAT----TAAATGAA-ACTA-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|3 : AAAACAC---ACA--G---C-TTGAAA--G-AGC---------CCA-----G-T----GAAGC-CGAACTCCGA-C-----TTTTGC-GATCTTT--AATGAGATTAAGGATTACCACG----CCGT-----------------GCTATACGTCACAAATGA--TACAAAAGCAATCGGCTCTA-CAGTAAA----CA-TACCAATGGATGAGGA--CTT---T----A--CA--GCACAAAT--TTG-TGGTGCTCCTGAATG--ATTAGAT---------CATATTAATTT-TTGAAACCTTTGATTAGA-AG--TA-ATGCAC--CAT----TAAATGAA-ATTACATCTGAAGACTCTGAAGCTGATGTAGAAG
gi|4 : cacatgtgacacaaaaatcatatacttctccaaattgattcttttggataaaaataatctaatttcttacaagcattctctttaccaagcatcagatAGAAAAT---ACA--T---C-TTGAAATAG-AGT---------CTA-----GCT----GAAGC-TGATCAAAGA-G-----TTTTGCCTATCTTTTTAAC-AGAT-AAGAATTAC-ACG-----CGT-----------------GCTATACGTCACAACTGAC-TA-AAAA--AATCAGCTCTA-CAGTAAA----CA-TACCGATGGATGAAGA--TTT---T----A--CA--G-AC---A--ACA-GGGTGCTCCTG-ATGAAATTAGAC---------CATATAA--TT-TTG-AACCTTTAATCAGA-AG--TA-ATGCAC--CAT----TAAAAGAAGAC-------------TTTGAAGCTGATTTAGAAAATAgaat
gi|6 : atgtgacgtaaagtcattttcttctccaaacgttagttttcctggataaaaataaaccaatttataacaagcattctctttaacaagcaccaggtaAAAATAC---CCA--G---C-CTGAAATAG-AGC---------CCA-----TCT----GTAGT-TGACCTCCGA-T-----TTTTGCCGATCTTT--AAT------------TAT-ACTCGTG----ATATGCTTGTATGTTATACTGGAC----TAAAT---------AAGCAATCAGCTCTA-CAGTAAA----CA-AATCAATGGATGAGGA--TTT---T----A--CA--G-AC---AAACTC-TGATGTTCCTG-GTGAAATTAGAC---------TGTCTAA--TT-TTG-AACCTTTAATTAGA-AA--TA-ATGCAC--CAT----TAAAACAA-ACatt
gi|5 : aggacatgcgacacaaaaacattttgctcttcaaacattttattctatttaaaaggtattaagcatcagataAAAACAC---ACA--G---CCTTGAAATAG-AGT---------CCA-----GCT----GAAGCCTGATTTCCGA-------ACTTTTCGATCTTT--AATGAGAT-ACG-ATTAC-ACGCTCGC------------TATA---------AGGTCACAAGTGA--CACAA--GCAATCAGCTCCGACAGTAAA----CA-TACCAAT-GACGAAGA--TTT---C----A--CA--G-ACAAAT--TTGTTGGTGGTCCTG-ATG-AATTAGATAAATAAGTACATGTAA--TTGTTGAAACCTTTGA-TAGA-AA--TA-ATGCA---CAT----TGCATGAA-ACT
gi|2 : ggacatgtgacacaaaatgattttctctctcaaatgttttcttggttaaaataaccaatccagaacaaacattctcttaacaagcattaatAGAATATC--ACACTGAATC-TGGAAATAGTAGT---------CTATAAATACTAGTGGAATC-AGTTCTCAGAGC-----AAT-GCCGACAATT--AATGAGAT-AAGGGT-----CAAGCG------------------TGTGTTATACGTCAGAGGTGAGCTA-----GCAA---ATTCT--CACTG------------CAATGGAAGGAGA--TTTTTTC----A--GATGG-AT---T--TTC-CCTTGCACCAG-AAGACATTAGAC---------CCTATAA--TT-TTG-AG-CTTTCATTAAACAC--T---TACACA-TATGGCAGAAATGAA-AATG-----AA----TTTGAAG
gi|11 : ccttaaaggacacatggcacaaaaaatattttgtctttatacactgtctatatcacccttaagacAGAAAAC---ACT--G---T-TTGAAATAG-AGT---------CCA-----GCT----attcagagggcagtgacttgagaaatgatgaggaaaatgcagcaggtggaatgggtatttgcagag
gi|1 : gtaaatgagacacaaaatcattctaccctccaaacattttcttggataaaattaatccaattcataaccagcatctctttaacaagcatcAATATGACACA--G---C-TGGAAATAGTAGTCTATAAATACTA-----GTT----GAAGC-AG---TTCGA-CTAGCAA--TGCCGACAATT--AATGACAT-A
gi|9 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgatT---ACA--G---C-TGGAAATAGTAGT---------C--------------GAGGC-AGTTCTCCGAGC-----AAT-GCCGACAATT--AATGAGAT-AAGGGT-----CAAGCG------------------TGTGTTATACGTCAGAGGTG---------AGC------TTCTT---GCAAATTCTCACTA-CAATGGAAGGAGA--TTT---TTCAGA--CA--G-AT---T--TTC-CCTTGCACCAG-AAGACATTAGAC---------CCTCTAA--TT-TTG-AGCTTTTAATcgtcagaggtgagcttcctgcaaattcgcactacaatggaaggatacttttcagacggattttcccttgcaccagaagacattataccctctgattttgcgcttttattaaacacttacatatatggcagaaatgaaaattaatctgaagattcagaggacagtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|1 : tgataacatggCAATGGAAGGATACTTTT---C----AGACG--G-AT---T--TTC-CCTTGCACCAG-AAGACATTATAC---------CCTCTGA--TT-TTG-CGCTTTT-ATTAAA-CACTTACATATATGGCAG-----AAATGAA-AATT-----AA----TCTGAA---GATTCAGAGGACAaaacacttacagaatctaaagattcagagggcagtgacttgggaaaatgcagcaggtggaatgggtatttg
gi|10 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatgacacagctggaaatagtagtctataaatactagttgaagcagttcgactagcaatgccgacaattaatgacatacgtcagaggtgagcttcctgcaaattcgcactaA--G-AC---T--TTC-CCTTGCACCTG-AAGAAATTAGAC---------CCTATAA--TT-TTG-GGCCTTT-ATTAAA-gtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GACCCTATAATTTTGAGCTTTTATTAAACAATTACACAGAAAATGAATCTGAAAGTTCAGAAGGCAGTGACTGAGGAAATGATGAGAAAAGTGCAGCAGGTGGAATGGGTATTTGCAGA
Unaligned ( gi|13 ): TCTCCAAACGTTTTCTTGGATAAAGTTAAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|14 ): TCTCCAAACGTTTTCTTGATAAAGTTAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|15 ): ACATGGCACAGCTGGAAATAGTAGTCTATAATTACTAGTCGAAGCAGTT
Unaligned ( gi|16 ): AAGGGACATGTGATACAAAAACAGTTTGCTCTCCAAACATTTTCT
Alignments
lowQualScore : 1 111111111 111111111111 22222222222 99999999999999999999999 222222 11 11 11111111 111111 111111111 1 11 222222222222222
lowQualScore : 1 4 55 666 3 4 444444444 0 111111111111 4 1 6 22222222222 1 55 4 1 3 99999999999999999999999 4 0 555555 666 22 0 4 22 0 00 3 55 1 1 55 99999999 55 4 555555 77777 1 4 1 11 444444444 1 3 3 55 3 0 0 66 4 4 2 55 9999 0 777777777777777 4 1
lowQualScore : . . .. ... . . ......... . ............ . . . ........... . .. . . . ....................... . . ...... ... .. . . .. . .. . .. . . .. ........ .. . ...... ..... . . . .. ......... . . . .. . . . .. . . . .. .... . ............... . .
lowQualScore : 2 0 00 444 6 5 555555555 4 111111111111 0 0 0 44444444444 2 55 0 9 1 44444444444444444444444 4 5 000000 555 33 7 8 88 8 00 6 55 0 4 55 99999999 55 0 777777 11111 0 0 0 44 555555555 0 6 6 00 6 3 8 11 4 4 7 00 4444 1 000000000000000 3 0
consensus : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
Reference ( family-3271 ) : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGNTGCNCCTG-ANGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
gi|1 : A-CACA--G---C-TGGAAATAGTAGTCTATAAATACTA-----GTT----GAAG-CAG---TTCGA-C--TAGCAATGCCGACAATT--AATGACAT-A
gi|1 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatg-ATACGTCAGAGGTGA--------------------GCT-T-CCTGCAAATTCGC-ACTACAATGGAAGGATACTTTT---CAG--ACG--G-AT---T--TT-CCCTTGCACCAG-AAGACATTATAC---------CCTC-TGATT-TT--G-CGCTTTT-ATTAAACACTTACA-TATATGGCA-----GAAATGAAAAT---T-----AA----TCTGAA---GATTCAGAGGACAcgtcagaggtgagcttcctgcaaattcgcactacaatggaaggatacttttcagacggattttcccttgcaccagaagacattataccctctgattttgcgcttttattaaacacttacatatatggcagaaatgaaaattaatctgaagattcagaggacagtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|10 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatgacacagctggaaatagtagtctataaatactagttgaagcagttcgactagcaatgccgacaattaatgac-CACA--G---C-TGGAAATAGTAGT---------CTA-------T-----AAG-CAA------------------TGCCAACAGTT--AATGAGAT-AAGAATTgtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|10 : cttaaagggcacgacttaaaatatattttgtcttcattcactgtcttcatcatccataagccagatctctcacactcattctcaaataagcatctgataacatggA--CATTAT--TAATGGAAG------------------TA--G-AC---T--TT-CCCTTGCACCTG-AAGAAATTAGAC---------CCTA-TAATT-TT--G-GGCCTTT-ATTAAAttcactacattattaatggaagtagactttcccttgcacctgaagaaattagaccctataattttgggcctttattaaaca
gi|11 : cttaaagggcacgacttaaaatatattttgtcttcattcactgtcttcatcatccataagccagatctctcacactcattctcaaataagcatctgataacatggcacagctggaaatagtagtctataagcaatgccaacagttaatgagataagaattttcactAGAAAA-CACT--G---T-TTGAAATAG-AGT---------CCA-----GCT----ca
gi|12 : gtaaatgagacacaaaatcattctaccctccaaacattttcttggataaaattaatccaattcataaccagcatctctttaacaagcatcGAC---------CCTA-TAATT-TT--G-AGCTTTT-ATT--AAA--CA-A-T-TACA-CAG----AAAATGAATCTGAAA-----GT----TCAGAAG
gi|16 : ACATGTGA------TACAAAAACAGTTTGCTCT-CC---AAA--CAT-gcagtgactgaggaaatgatgagaaaagtgcagcaggtggaatgggtatttgcaga
gi|2 : aagggAGAATATCACACTGAATC-TGGAAATAGTAGT---------CTATAAATACTAGTGGAAT-CAGTTCTCAGAGCAAT------GCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGC----TA-----GCAA---ATTCT--CACTG------------CAATGGAAGGAGA--TTTTTTC----AGATGG-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTA-TAATT-TT--G-AG-CTTTCATT--AAA--CA-CTTACACA-TATGGCAGAAATGAAAAT---G-----AA----TTTGAA---GATTCAGAGGtttct
gi|3 : ccttaaaggacacatggcacaaaaaatattttgtctttatacactgtctatatcacccttaagacAAAACA-CACA--G---C-TTGAAA--G-AGC---------CCA-----G-T----GAAG-CCGAACTCCGA-CTTT-----TGC-GATCTTT--AATGAGATTAAGGATTAC-----CAC-GC----------C---GTGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGCTCT-ACAGTAAA--CAT-AC--CAATGGATGAGGA--CTT---T----ACA--GCACAAAT--TT-GTGGTGCTCCTGAATG--ATTAGAT---------CATATTAATT-TTTGA-AACCTTTGATTAGAAG--TA-A-TGCAC--CAT----TAAATGAAATT---ACATCTGAAGACTCTGAAGCTGATGTAGAAGgcagtgacttgagaaatgatgaggaaaatgcagcaggtggaatgggtatttgcagag
gi|4 : cacatgtgacacaaaaatcatatacttctccaaattgattcttttggataaaaataatctaatttcttacaagcattctctttaccaagcatcagatAGAAAA-TACA--T---C-TTGAAATAG-AGT---------CTA-----GCT----GAAG-CTGATCAAAGA-GTTT-----TGCCTATCTTTTTAAC-AGAT-AAGAATTACACG---------------------CGTGCT-ATACGTCACAACTGAC-----TA-AAAA--AATCAGCTCT-ACAGTAAA--CAT-AC--CGATGGATGAAGA--TTT---T----ACA--G-AC---A--AC-AGGGTGCTCCTG-ATGAAATTAGAC---------CATA-TAATT-TT--G-AACCTTTAATCAGAAG--TA-A-TGCAC--CAT----TAAAAGA-------A-----GAC---TTTGAAGCTGATTTAGAAAATAgaat
gi|5 : atgtgacgtaaagtcattttcttctccaaacgttagttttcctggataaaaataaaccaatttataacaagcattctctttaacaagcaccaggtaAAAACA-CACA--G---CCTTGAAATAG-AGT---------CCA-----GCT----GAAGCCTGATTTCCGA--ACT-----TTTCGATCTTT--AATGAGAT--ACGATTACAC--GCTC-GC----------TA------T-A-AGGTCACAAGTGA------CAC--AAGCAATCAGCTCCGACAGTAAA--CAT-AC--CAAT-GACGAAGA--TTT---C----ACA--G-ACAAAT--TTGTTGGTGGTCCTG-ATG-AATTAGATAAATAAGTACATG-TAATTGTT--GAAACCTTTGA-TAGAAA--TA-A-TGCA---CAT----TGCATGAAACT---att
gi|6 : ggacatgtgacacaaaatgattttctctctcaaatgttttcttggttaaaataaccaatccagaacaaacattctcttaacaagcattaatAAAATA-CCCA--G---C-CTGAAATAG-AGC---------CCA-----TCT----GTAG-TTGACCTCCGA-TTTT-----TGCCGATCTTT--AAT------------TATACT----C-GT----------GAT-ATGCTTGTATGTTATACTGGAC-----TAAATAAGCAATCAGCTCT-ACAGTAAA--CAA-AT--CAATGGATGAGGA--TTT---T----ACA--G-AC---AAACT-CTGATGTTCCTG-GTGAAATTAGAC---------TGTC-TAATT-TT--G-AACCTTTAATTAGAAA--TA-A-TGCAC--CAT----TAAAACAAAC
gi|7 : aggacatgcgacacaaaaacattttgctcttcaaacattttattctatttaaaaggtattaagcatcagataAGAATA-TACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CTGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGCCGTATATGATTTATATTATGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAA--CAT-AC--CAATGGATGGAGA--TTT---C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|8 : AGAATA-TACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CTGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGC-GTATATGATTTATATTAT-CT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAAAACAT-AC--CAATGGATGGAGA--TT----C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|9 : ACA--G---C-TGGAAATAGTAGT---------C--------------GAGG-CAGTTCTCCGAGCAAT------GCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGCTTCTTGCAAA---------TTCT--CACTA------------CAATGGAAGGAGA--TTT---TTCAGACA--G-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTC-TAATT-TT--G-AGCTTTTAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTCCAAACGTTTTCTTGGATAAAGTTAAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|14 ): TCTCCAAACGTTTTCTTGATAAAGTTAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|15 ): ACATGGCACAGCTGGAAATAGTAGTCTATAATTACTAGTCGAAGCAGTT
Alignments
lowQualScore : 1 111111111 111111111111 22222222222 99999999999999999999999 222222 11 11 11111111 111111 111111111 1 11 222222222222222
lowQualScore : 1 4 55 666 3 4 444444444 0 111111111111 4 1 6 22222222222 1 55 4 1 3 99999999999999999999999 4 0 555555 666 22 0 4 22 0 00 3 55 1 1 55 99999999 55 4 555555 77777 1 4 1 11 444444444 1 3 3 55 3 0 0 66 4 4 2 55 9999 0 777777777777777 4 1
lowQualScore : . . .. ... . . ......... . ............ . . . ........... . .. . . . ....................... . . ...... ... .. . . .. . .. . .. . . .. ........ .. . ...... ..... . . . .. ......... . . . .. . . . .. . . . .. .... . ............... . .
lowQualScore : 2 0 00 444 6 5 555555555 4 111111111111 0 0 0 44444444444 2 55 0 9 1 44444444444444444444444 4 5 000000 555 33 7 8 88 8 00 6 55 0 4 55 99999999 55 0 777777 77777 4 0 4 44 555555555 0 6 6 00 6 3 8 11 4 4 7 00 4444 1 000000000000000 3 0
consensus : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
Reference ( family-3271 ) : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
gi|1 : A-CACA--G---C-TGGAAATAGTAGTCTATAAATACTA-----GTT----GAAG-CAG---TTCGA-C--TAGCAATGCCGACAATT--AATGACAT-A
gi|1 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatg-ATACGTCAGAGGTGA--------------------GCT-T-CCTGCAAATTCGC-ACTACAATGGAAGGATACTTTT---CAG--ACG--G-AT---T--TT-CCCTTGCACCAG-AAGACATTATAC---------CCTC-TGATT-TT--G-CGCTTTT-ATTAAACACTTACA-TATATGGCA-----GAAATGAAAAT---T-----AA----TCTGAA---GATTCAGAGGACAcgtcagaggtgagcttcctgcaaattcgcactacaatggaaggatacttttcagacggattttcccttgcaccagaagacattataccctctgattttgcgcttttattaaacacttacatatatggcagaaatgaaaattaatctgaagattcagaggacagtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|10 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatgacacagctggaaatagtagtctataaatactagttgaagcagttcgactagcaatgccgacaattaatgac-CACA--G---C-TGGAAATAGTAGT---------CTA-------T-----AAG-CAA------------------TGCCAACAGTT--AATGAGAT-AAGAATTgtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|10 : cttaaagggcacgacttaaaatatattttgtcttcattcactgtcttcatcatccataagccagatctctcacactcattctcaaataagcatctgataacatggA--CATTAT--TAATGGAAG------------------TA--G-AC---T--TT-CCCTTGCACCTG-AAGAAATTAGAC---------CCTA-TAATT-TT--G-GGCCTTT-ATTAAAttcactacattattaatggaagtagactttcccttgcacctgaagaaattagaccctataattttgggcctttattaaaca
gi|11 : cttaaagggcacgacttaaaatatattttgtcttcattcactgtcttcatcatccataagccagatctctcacactcattctcaaataagcatctgataacatggcacagctggaaatagtagtctataagcaatgccaacagttaatgagataagaattttcactAGAAAA-CACT--G---T-TTGAAATAG-AGT---------CCA-----GCT----ca
gi|12 : gtaaatgagacacaaaatcattctaccctccaaacattttcttggataaaattaatccaattcataaccagcatctctttaacaagcatcGAC---------CCTA-TAATT-TT--G-AGCTTTT-ATT--AAA--CA-A-T-TACA-CAG----AAAATGAATCTGAAA-----GT----TCAGAAG
gi|16 : ACATGTGA------TACAAAAACAGTTTGCTCT-CC---AAA--CAT-gcagtgactgaggaaatgatgagaaaagtgcagcaggtggaatgggtatttgcaga
gi|2 : aagggAGAATATCACACTGAATC-TGGAAATAGTAGT---------CTATAAATACTAGTGGAAT-CAGTTCTCAGAGCAAT------GCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGC----TA-----GCAA---ATTCT--CACTG------------CAATGGAAGGAGA--TTTTTTC----AGATGG-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTA-TAATT-TT--G-AG-CTTTCATT--AAA--CA-CTTACACA-TATGGCAGAAATGAAAAT---G-----AA----TTTGAA---GATTCAGAGGtttct
gi|3 : ccttaaaggacacatggcacaaaaaatattttgtctttatacactgtctatatcacccttaagacAAAACA-CACA--G---C-TTGAAA--G-AGC---------CCA-----G-T----GAAG-CCGAACTCCGA-CTTT-----TGC-GATCTTT--AATGAGATTAAGGATTAC-----CAC-GC----------C---GTGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGCTCT-ACAGTAAA--CAT-AC--CAATGGATGAGGA--CTT---T----ACA--GCACAAAT--TT-GTGGTGCTCCTGAATG--ATTAGAT---------CATATTAATT-TTTGA-AACCTTTGATTAGAAG--TA-A-TGCAC--CAT----TAAATGAAATT---ACATCTGAAGACTCTGAAGCTGATGTAGAAGgcagtgacttgagaaatgatgaggaaaatgcagcaggtggaatgggtatttgcagag
gi|4 : cacatgtgacacaaaaatcatatacttctccaaattgattcttttggataaaaataatctaatttcttacaagcattctctttaccaagcatcagatAGAAAA-TACA--T---C-TTGAAATAG-AGT---------CTA-----GCT----GAAG-CTGATCAAAGA-GTTT-----TGCCTATCTTTTTAAC-AGAT-AAGAATTACACG---------------------CGTGCT-ATACGTCACAACTGAC-----TA-AAAA--AATCAGCTCT-ACAGTAAA--CAT-AC--CGATGGATGAAGA--TTT---T----ACA--G-AC---A--AC-AGGGTGCTCCTG-ATGAAATTAGAC---------CATA-TAATT-TT--G-AACCTTTAATCAGAAG--TA-A-TGCAC--CAT----TAAAAGA-------A-----GAC---TTTGAAGCTGATTTAGAAAATAgaat
gi|5 : atgtgacgtaaagtcattttcttctccaaacgttagttttcctggataaaaataaaccaatttataacaagcattctctttaacaagcaccaggtaAAAACA-CACA--G---CCTTGAAATAG-AGT---------CCA-----GCT----GAAGCCTGATTTCCGA--ACT-----TTTCGATCTTT--AATGAGAT--ACGATTACAC--GCTC-GC----------TA------T-A-AGGTCACAAGTGA------CAC--AAGCAATCAGCTCCGACAGTAAA--CAT-AC--CAAT-GACGAAGA--TTT---C----ACA--G-ACAAAT--TTGTTGGTGGTCCTG-ATG-AATTAGATAAATAAGTACATG-TAATTGTT--GAAACCTTTGA-TAGAAA--TA-A-TGCA---CAT----TGCATGAAACT---att
gi|6 : ggacatgtgacacaaaatgattttctctctcaaatgttttcttggttaaaataaccaatccagaacaaacattctcttaacaagcattaatAAAATA-CCCA--G---C-CTGAAATAG-AGC---------CCA-----TCT----GTAG-TTGACCTCCGA-TTTT-----TGCCGATCTTT--AAT------------TATACT----C-GT----------GAT-ATGCTTGTATGTTATACTGGAC-----TAAATAAGCAATCAGCTCT-ACAGTAAA--CAA-AT--CAATGGATGAGGA--TTT---T----ACA--G-AC---AAACT-CTGATGTTCCTG-GTGAAATTAGAC---------TGTC-TAATT-TT--G-AACCTTTAATTAGAAA--TA-A-TGCAC--CAT----TAAAACAAAC
gi|7 : aggacatgcgacacaaaaacattttgctcttcaaacattttattctatttaaaaggtattaagcatcagataAGAATA-TACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CTGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGCCGTATATGATTTATATTATGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAA--CAT-AC--CAATGGATGGAGA--TTT---C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|8 : AGAATA-TACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CTGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGC-GTATATGATTTATATTAT-CT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAAAACAT-AC--CAATGGATGGAGA--TT----C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|9 : ACA--G---C-TGGAAATAGTAGT---------C--------------GAGG-CAGTTCTCCGAGCAAT------GCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGCTTCTTGCAAA---------TTCT--CACTA------------CAATGGAAGGAGA--TTT---TTCAGACA--G-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTC-TAATT-TT--G-AGCTTTTAAT
blockSeqs : T T CT AAT C T . TAAATACTAGTG C A T GCAAT G TT T T A GAGTGCCGTATATGATTTATATT T GCTTCT CAA AA T GA AA T . A G . TTCAG TG C AAAT GTTGG A A A AA AAATAAGTA C T G TG A C . . T A A GGCA ACATCTGAAGAC G T
blockSeqs : C . . . . T . GCT . A A CTTTT A . . T A GAGTGCGTATATGATTTATATT . GC CAA AG G C . . . A A . TTTC . . AAAT CCCT A . A AC . C . . . . G . . . G A . GAAAGT G G
blockSeqs : A . . . . T . GCT . C A GTTTT T . . T A GCTCGCTA . C AAT AG A A . . . T A . T . . AAA CCCT T . T AA . C . . . . A . . . G . . AGAC G T
blockSeqs : C . . . . . . GCT . T A TTTTT T . . T A TCGTGAT . C CAA AG A A . . . T A . T . . T GTGG T . T AA . A . . . . G . . . G . . GAA G G
blockSeqs : T . . . . . . TCT . T A CATTT T . . T A CACGCC . . CAA AG A A . . . C A . C . . T AGGG T . T AA . A . . . . A . . . G . . AGA G G
blockSeqs : T . . . . . . GCT . T A CATTT T . . T . AAGCGT . . CAA AG G T . . . T G . T . . A CTGA T . T AA . A . . . . G . . . A . . AGA .
blockSeqs : T . . . . . . GCT . T A GCAAT T . . . . GC . . AA G G T . . . T G . C . . T ATGG T . T AC . G . . . . G . . . A . .
blockSeqs : . . . . . . GT . T T ACTT T . . . . . C A . . . . . T G . C . . T ATGG T . T A . A . . . . A . . . . . .
blockSeqs : . . . . . . T . A . T A . . . . . . . . . . A . . . . . T CCCT A . A . . A . . . . .
blockSeqs : . . . . . . . . . C . . . . .
blockSeqCons : ********* NNTTT****** CAA AG ** ** ** C******* ** **
originalCons : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGA-CATT-----TGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
finalCons : AGAATA-CACA--G---C-TTGAAATAG-AGT---------CCA-----GCT----GAAG-CNGATCTCCGANNTTT------GCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTTC-------ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTCCAAACGTTTTCTTGGATAAAGTTAAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|14 ): TCTCCAAACGTTTTCTTGATAAAGTTAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|15 ): ACATGGCACAGCTGGAAATAGTAGTCTATAATTACTAGTCGAAGCAGTT
Alignments
lowQualScore : 1 222222222 99999999999999999999999 222222 11 11 11111111 111111 111111111 1 11 222222222222222
lowQualScore : 1 4 55 777 4 2 666666666 8888 4 1 22 66 1 4 3 3 99999999999999999999999 4 0 555555 666 22 0 4 22 0 00 3 55 1 1 55 99999999 55 4 555555 77777 1 4 1 11 444444444 1 3 3 55 3 0 0 66 4 4 2 55 9999 0 777777777777777 4 1
lowQualScore : . . .. ... . . ......... .... . . .. .. . . . . ....................... . . ...... ... .. . . .. . .. . .. . . .. ........ .. . ...... ..... . . . .. ......... . . . .. . . . .. . . . .. .... . ............... . .
lowQualScore : 2 4 55 000 0 0 000000000 5555 4 0 00 11 1 4 2 1 44444444444444444444444 4 5 000000 555 33 7 8 88 8 00 6 55 0 4 55 99999999 55 0 777777 77777 4 0 4 44 555555555 0 6 6 00 6 3 8 11 4 4 7 00 4444 1 000000000000000 3 0
consensus : AGAATA-CACA--G---C-TTGAAATAG-AGTCCA---------GCT----GAAG-CTGATCTCCGANCTTTGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
Reference ( family-3271 ) : AGAATA-CACA--G---C-TTGAAATAG-AGTCCA---------GCT----GAAG-CNGATCTCCGANNTTTGCCGATCTTT--AATGAGAT-AAGGATTACACGAGCGC-GT----------TATTGTGCT-ATACGTCACAAGTGA------TACAAAAGCAATCGGCTCT-NCAGTAAA--CAT-AC--CAATGGANGGAGA--TTT---C----ACA--G-AC---T--TT-CCGGTGCTCCTG-ATGAAATTAGAC---------CNTA-TAATT-TT--G-AGCCTTTGATTAGAAA--TA-A-TGCAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATNTAGAAGATATT
gi|1 : A-CACA--G---C-TGGAAATAGTAGTCTATAAATACTAGTT----GAAG-CAGTTCGACTAGCAATGCCGACAATT--AATGACAT-A
gi|1 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatg-ATACGTCAGAGGTGA--------------------GCT-T-CCTGCAAATTCGC-ACTACAATGGAAGGATACTTTT---CAG--ACG--G-AT---T--TT-CCCTTGCACCAG-AAGACATTATAC---------CCTC-TGATT-TT--G-CGCTTTT-ATTAAACACTTACA-TATATGGCA-----GAAATGAAAAT---T-----AA----TCTGAA---GATTCAGAGGACAcgtcagaggtgagcttcctgcaaattcgcactacaatggaaggatacttttcagacggattttcccttgcaccagaagacattataccctctgattttgcgcttttattaaacacttacatatatggcagaaatgaaaattaatctgaagattcagaggacagtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|10 : cttaagggacacatgacacaaaaaatattttgtctttattcattgtcattattcattatctatatcacccttaagatatattctcacactgaataagttgaataagtatctgataatatgacacagctggaaatagtagtctataaatactagttgaagcagttcgactagcaatgccgacaattaatgacA--CATTAT--TAATGGAAG------------------TA--G-AC---T--TT-CCCTTGCACCTG-AAGAAATTAGAC---------CCTA-TAATT-TT--G-GGCCTTT-ATTAAAgtgacttagagaatgattaggaaaatgcagcagatggaatgggtatttgc
gi|11 : cttaaagggcacgacttaaaatatattttgtcttcattcactgtcttcatcatccataagccagatctctcacactcattctcaaataagcatctgataacatggcacagctggaaatagtagtctataagcaatgccaacagttaatgagataagaattttcactAGAAAA-CACT--G---T-TTGAAATAG-AGTCCA---------GCT----ca
gi|12 : gtaaatgagacacaaaatcattctaccctccaaacattttcttggataaaattaatccaattcataaccagcatctctttaacaagcatcGAC---------CCTA-TAATT-TT--G-AGCTTTT-ATT--AAA--CA-A-T-TACA-CAG----AAAATGAATCTGAAA-----GT----TCAGAAG
gi|16 : ACATGTGA------TACAAAAACAGTTTGCTCT-CC---AAA--CAT-gcagtgactgaggaaatgatgagaaaagtgcagcaggtggaatgggtatttgcaga
gi|2 : aagggAGAATATCACACTGAATC-TGGAAATAGTAGTCTATAAAT----ACTAGTGGAAT-CAGTTCTCAGAGCAATGCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGC----TA-----GCAA---ATTCT--CACTG------------CAATGGAAGGAGA--TTTTTTC----AGATGG-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTA-TAATT-TT--G-AG-CTTTCATT--AAA--CA-CTTACACA-TATGGCAGAAATGAAAAT---G-----AA----TTTGAA---GATTCAGAGGtttct
gi|3 : ccttaaaggacacatggcacaaaaaatattttgtctttatacactgtctatatcacccttaagacAAAACA-CACA--G---C-TTGAAA--G-AGCCCA---------G-T----GAAG-CCGAACTCCGACTTTTGC-GATCTTT--AATGAGATTAAGGATTAC-----CAC-GC----------C---GTGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGCTCT-ACAGTAAA--CAT-AC--CAATGGATGAGGA--CTT---T----ACA--GCACAAAT--TT-GTGGTGCTCCTGAATG--ATTAGAT---------CATATTAATT-TTTGA-AACCTTTGATTAGAAG--TA-A-TGCAC--CAT----TAAATGAAATT---ACATCTGAAGACTCTGAAGCTGATGTAGAAGgcagtgacttgagaaatgatgaggaaaatgcagcaggtggaatgggtatttgcagag
gi|4 : cacatgtgacacaaaaatcatatacttctccaaattgattcttttggataaaaataatctaatttcttacaagcattctctttaccaagcatcagatAGAAAA-TACA--T---C-TTGAAATAG-AGTCTA---------GCT----GAAG-CTGATCAAAGAGTTTTGCCTATCTTTTTAAC-AGAT-AAGAATTACACG---------------------CGTGCT-ATACGTCACAACTGAC-----TA-AAAA--AATCAGCTCT-ACAGTAAA--CAT-AC--CGATGGATGAAGA--TTT---T----ACA--G-AC---A--AC-AGGGTGCTCCTG-ATGAAATTAGAC---------CATA-TAATT-TT--G-AACCTTTAATCAGAAG--TA-A-TGCAC--CAT----TAAAAGA-------A-----GAC---TTTGAAGCTGATTTAGAAAATAgaat
gi|5 : atgtgacgtaaagtcattttcttctccaaacgttagttttcctggataaaaataaaccaatttataacaagcattctctttaacaagcaccaggtaAAAACA-CACA--G---CCTTGAAATAG-AGTCCA---------GCT----GAAGCCTGATTTCCGAACTTT-TCGATCTTT--AATGAGAT--ACGATTACAC--GCTC-GC----------TA------T-A-AGGTCACAAGTGA------CAC--AAGCAATCAGCTCCGACAGTAAA--CAT-AC--CAAT-GACGAAGA--TTT---C----ACA--G-ACAAAT--TTGTTGGTGGTCCTG-ATG-AATTAGATAAATAAGTACATG-TAATTGTT--GAAACCTTTGA-TAGAAA--TA-A-TGCA---CAT----TGCATGAAACT---att
gi|6 : ggacatgtgacacaaaatgattttctctctcaaatgttttcttggttaaaataaccaatccagaacaaacattctcttaacaagcattaatAAAATA-CCCA--G---C-CTGAAATAG-AGCCCA---------TCT----GTAG-TTGACCTCCGATTTTTGCCGATCTTT--AAT------------TATACT----C-GT----------GAT-ATGCTTGTATGTTATACTGGAC-----TAAATAAGCAATCAGCTCT-ACAGTAAA--CAA-AT--CAATGGATGAGGA--TTT---T----ACA--G-AC---AAACT-CTGATGTTCCTG-GTGAAATTAGAC---------TGTC-TAATT-TT--G-AACCTTTAATTAGAAA--TA-A-TGCAC--CAT----TAAAACAAAC
gi|7 : aggacatgcgacacaaaaacattttgctcttcaaacattttattctatttaaaaggtattaagcatcagataAGAATA-TACA--G---C-TTGAAATAG-AGTCCA---------GCT----GAAG-CTGATCTCCGACATTTGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGCCGTATATGATTTATATTATGCT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAA--CAT-AC--CAATGGATGGAGA--TTT---C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|8 : AGAATA-TACA--G---C-TTGAAATAG-AGTCCA---------GCT----GAAG-CTGATCTCCGACATTTGCCGATCTTT--AATGAGAT-AAGGATTACACGAGTGC-GTATATGATTTATATTAT-CT-ATACGTCACAAATGA------TACAAAAGCAATCGGTTCT-TCAGTAAAAACAT-AC--CAATGGATGGAGA--TT----C----ACA--G-AC---T--TT-ATGGTGCTCCTG-ATGAAATTAGAC---------CATA-TCATT-TT--G-AACCTTTGATTAGAAA--TA-A-TACAC--CAT----TAAATGAAACT---A-----GA----TCTGAAGCTGATGTAGAAGATATT
gi|9 : ACA--G---C-TGGAAATAGTAGTC------------------GAGG-CAGTTCTCCGAGCAATGCCGACAATT--AATGAGAT-AAGGGT----CAAGCG-----------------TGTGTT-ATACGTCAGAGGTGAGCTTCTTGCAAA---------TTCT--CACTA------------CAATGGAAGGAGA--TTT---TTCAGACA--G-AT---T--TT-CCCTTGCACCAG-AAGACATTAGAC---------CCTC-TAATT-TT--G-AGCTTTTAAT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TCTCCAAACGTTTTCTTGGATAAAGTTAAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|14 ): TCTCCAAACGTTTTCTTGATAAAGTTAACCAATTCATAACAAGCATTCTCTTTAACAAGCATCAGAT
Unaligned ( gi|15 ): ACATGGCACAGCTGGAAATAGTAGTCTATAATTACTAGTCGAAGCAGTT