lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 22222222 1 222222222222 111 33333333333333 2222 22222222 111 222222222 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 555555555555555 333333 1 2222222 22 1 1111 88888888888888888888888888 11 111 11 11111 222222222222 1111111 111111 1 1 11111 1111 2222222 2222222222 11111 444444444444444444 111 1111 111111 11 1111 111111 111111 22222222222 22 1 33333 111111 111 2222 222 1 111111 111 11 11111 111 1 2222 111 111 111111 1111 11 22222 11 33333333333 111 111 1 11 222 11 1 333 444444444444 222 1 1 2 2222 222 11 2 1 44444444444 1 5555555555 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 555 77 5 33 1 0 1 88888888 5 0 5 555555555555 5 5 000 55555555555555 3333 6 88888888 0 77 000 77 111111111 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 6 99 99 6 3 000000000000000 333333 3 99 6 6 1111111 11 1 8 0 5 8 2222 0 33333333333333333333333333 11 444 0 8 0 66 5 77777 000000000000 99 6 5555555 6 6 444444 6 6 7 3 11111 6 7 4444 1111111 6 0000000000 77 5 6 6 99 99999 6 5 77 222222222222222222 5 000 5 5 00 6666 1 666666 5 33 77 7777 5 555555 77 77 666666 44444444444 22 6 6 6 8 0 8 8 8 6 11111 7 222222 88 1 6 6 111 1 1 6 6 0000 000 2 6 3 6 444444 000 99 77 44444 77 000 77 5 5 5 99 6 6 7 0000 999 111 6 6 6 6 1 999 6 0 8 3 8 333333 7777 8 0 11 33333 9 44 8 0 55555555555 222 88 8 444 7 5 99 5 555 6 88 3 333 888888888888 333 3 7 3 6 3 2222 333 22 1 3 22222222222 3 0 5555555555 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555
lowQualScore : ... .. . .. . . . ........ . . . ............ . . ... .............. .... . ........ . .. ... .. ......... ....................................................................................... . .. .. . . ............... ...... . .. . . ....... .. . . . . . .... . .......................... .. ... . . . .. . ..... ............ .. . ....... . . ...... . . . . ..... . . .... ....... . .......... .. . . . .. ..... . . .. .................. . ... . . .. .... . ...... . .. .. .... . ...... .. .. ...... ........... .. . . . . . . . . . ..... . ...... .. . . . ... . . . . .... ... . . . . ...... ... .. .. ..... .. ... .. . . . .. . . . .... ... ... . . . . . ... . . . . . ...... .... . . .. ..... . .. . . ........... ... .. . ... . . .. . ... . .. . ... ............ ... . . . . . .... ... .. . . ........... . . .......... . ............................................................................................
lowQualScore : 999 99 7 66 7 1 4 11111111 7 0 0 666666666666 0 0 000 33333333333333 3333 7 00000000 9 99 000 44 777777777 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 7 22 22 7 3 888888888888888 222222 3 22 7 7 7777777 00 0 0 8 2 0 2222 8 22222222222222222222222222 00 000 8 0 8 22 0 55555 333333333333 22 7 3333333 7 7 555555 7 7 3 3 88888 7 3 2222 2222222 7 3333333333 99 7 7 7 22 55555 7 7 99 111111111111111111 0 000 7 7 99 7777 7 444444 7 66 99 9999 7 999999 99 99 444444 11111111111 55 7 7 7 0 8 0 0 0 0 00000 3 555555 88 0 7 7 777 0 7 7 7 8888 888 5 7 3 0 666666 000 33 99 33333 33 000 99 7 7 7 22 7 0 0 8888 222 777 7 7 7 7 7 000 7 8 0 8 0 888888 0000 0 8 00 55555 8 00 0 8 88888888888 444 88 0 888 0 4 00 0 888 0 33 3 000 777777777777 333 3 3 3 7 3 7777 333 33 0 3 77777777777 3 7 3333333333 0 00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----AA--ACATG-CTA-G-CAT------------AG-T-AA---AA----CA------TTTTTT----GCTGTGATA-TA--T---CCATGTGTAC--AA---AT-GAGTAT-CA------TAAA----C---------TTA-------------------AATT--------------------A--TAC---------------------CAA-AAA--TGAGC--AT-TAA-ATAAGG---------------TTAAAA----A-GGATA-TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTT-----A---AAAAAAACTAA-CTACA--TTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-AC-ATG-C-T--TCA-AAAGGT-AGTTTTAACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATAT-TT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCAA--CC----A-A-TT--TTC------------------GTTTTCA---A-TT-TATTCG--C-TTTAA------A-AA--AT--AA----TACCACT-TT--A--TTTTTT--T--TAT------TTG------GT---AGAA--CATC-GATT-G-GA-CCTTTT-ATAAA-TGAT-AAC-CATTT----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGGT--CA--ATA---TCA--T--AAT-----TCGGTATTT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-TCC---AT-AAA-T-CAA-TGGATTATCTT-T-AAAAATTTA-CACTTTC-AA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTT-GTCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAAGTA--GGATGTTTTAG-GTTGCTAAAC--GCTCA-TTTTCTCTC-GTAAA--------TT--GGCCACTTTT---GGT-TGCCACGGTAAC-CACAGTCCTGGGTAA--A-ATCT---AACATNNAATT-TTTTAAA---GA------TTTGA-CATATATN-------CTCCCTACANATNACAGTGTTTCAGTACCAAATATCATGAAAGGNGTANATCATCAGTCATTTGATCC-ACACTCTCTNCNCATTCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( gi|5 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----AC--ACATG-CTA-G-CAT------------AG-T-AA---AA----CA------TGTTTT----GCTGTGATA-TA--T---CCATATGTAC--AA---AT-GAGTAT-CA------TAAA----C---------TTA-------------------AAT---------------------A--TAC---------------------CAA-AAA--TGAGC--AT-TAA-ATAAGG---------------TTAAAA----T-GGATA-TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT-------G---AAAAAAACTAAACTACA--TTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-AC-ATG-T-T--TCA-AAAGGT-AGTTTTGACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATAT-TT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCAA--CT----A-A-TT--TTC------------------GTTTTCA---A-TT-TATTCG--T-TTTAA------A-AA--AT--AA----TACCACT-TT--A--TTTTTT--T--TAT------TTG------GT---AGAA--CATC-GATT-G-GA-CCTTTT-ATAAA-TGAT-AAC-CATT-----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGAT--CA--ATA---TCA--T--AAT-----TCGATATTT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-TCC---AT-AAA-T-CAA-TGGATTATCTT-T-AAAAATTTA-CACTTTC-AA--T--AG----AT-TTAT--ACTGACT---ATGTTATTT-GTCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATTA--GGATGTTTTTG-GCTGCTAAAT--GCTCA-TTTTCTCTT-ATAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAA--A-ATCT---AACATATAATTATTTTTAA---GA------TTTGA-CATGTGTA-------CTCCCTACAAA-AA----GTTTCA-T-CC-AA-ATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-T-TGTGTT-----------TGATGCTTACAGAGAATGACTCTGAAAGACTGATTAAACGAAGAACAGTCTTTTGTGC
gi|4 : ATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A---ACATG-TTATG-CAT------------AG-T-AA---AAAA--CA------TATTTTTT--GCTGTGATA-TAAGT---C--TATGTATCAAA---AT-GAGTAT-CA------TAAA----C---------TTA-------------------AATTACAAATAGTTCATTTCATAAA--TAC---------------------CAA-AAA--TGAGC--AT-TAA-ATAAGG---------------TTAAAA----A-GGAAA-TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C--TG-G-A--C-C-TTT-------A---AAAAA--------TACA--TTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-AC-ATG-C-T--TCA-AAAGGT-AGTTTT-ACAAAGTTTCATAC---A-AAAAGAG-AAT-AC----ATATAT-T--AA-GCAA-TTTT----------GTATTAATT-AC-TGATAGCAA--CC----A-AATT--TTT------------------GTTT-CA---A-TT-TAT-CGAGT-TTTAA------A-AA--AA--AAA---TACCACT-TT--A--GTTTTT--T---AT------GTG-------T---AGAAA-CATC-GATT-G-GA-CCTTTTTATAAA-TGCTCAAC-CATT-----AAATAAT-AT-ATGTGCCGCG-TTTTCT-GCT-ACATGAG---C-TTGAAA-ATT-T----AAAAAAAAAATGCAACTTTT-TTCAAATTTTGGT--CA--ATA---TCAA-T--AAT-----TCG-TATTT---T---CAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TATCC---AT-AAA-TGCAA-TGGATTATCTT-T-AAACATTTA-CACTTTC-A---T--AG----AT-T-AT--ACTGAAT---ATGTTATT--GTCTGA-CTTT-----------ACCCAAAA--TA---GAAATTT-T------TTAAATTAA-GGATGTTTT-A-GTTGCTAAAT--GCTCATTTTTCTC-T-ATAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATA-ATCT---AACATTCTATTTTTTTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATAA----GTTTCA-T-CCAAA-ATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCA-TCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|3 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----AA--ACATGTCTACG-GAT------------AG-TTAA---AA----CA------TTTTTG----GCTGTGATAATA--T---CCATATGTAC--AA---ATTGAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCAATTTTCATA--------------A--TAC---------------------CAA-AAA--TGAGC--AT-TGA-ATAATG---------------TTAAAA----AAGGGTA-TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAAAAAAA---AAAAAAACTAA-CTACA--TTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATG-CCT--TCA-AAAGGTTAGTTTTAACAAA--T-CATAC---A-AAA-GAT-AATTGC----ATATATATT-TA-ACAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGACC----A-A-TT--TTC-------------------TTTTCA---AATC-TATTCG--T-TTTAA------A-AA--AT--AA----ACCCACTGTT--A--GTTTTT--T--TAT------TTGGAGTTTGT---AGAAT-CATC-GATT-G-GA-CC-TTT-ATAAA-TGAT-AGC-CATTTTAAGAATTA-T-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA---TGCAAACTTT-T-TAAATTTTTGT--CAAGATATTTTCACTT--AAT-----TCGGTATTTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---TCCAAAAT-AAATT-CAA-TGAA--ATC---T-AAAAA-ATA-CAC---C-AA--TTAAGTGACAT-TTAT--A
gi|1 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAAA--ATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG------TTTTTT----GCTGTGATA-TA--T---C-ATGTATGC--AA---AT-GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------AATTTCATGG--------------A--TAC---------------------CAA-AAAAGTGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-------GGATAGTAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTT-----A---AAAAAAACTAA----CAATTTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-AC-ATG-T-TAATTATAGAGGT-AGTTGT-ACATAGTT-TCTGA---G-AAAAGACGAATTGC----ATATTT-GT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACAA--CC----A-A-TTGTTCC------------------GTTTTCA---A-GT-TCATCG--TGTTTAAGAATGAA-AA--GA--AA----TAACACT-TTCAG--TTTTTT--TCTTAT------TTG------GT---AGAA--AA-C-GATTTG-GA-C-TTTT-ATAAA-TGAT-ATA-CATT-----AAA-A-T-CA-ATGa
gi|6 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----AA--ACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA------GTTTTT----GCTGTGATA-TA--A---CCATACGTAC--AA---AT-GAGTAT-CA------TAAA----C---------TTA-------------------AAT---------------------A--TAaaannnnnnnnnnnnnnnnnnnnnnnnngtatatatgtgccgcgttttcttgctacagagcctcaaaaatgtaaaaaatattgcaactttttcaaattttggtaaatgtcataattcggtatttttcacctcgctgtagatgatttacgatacataattccattaatcaatagattacctttgaatatttacaccttcaatagatttatactgaatatgttatttgtctgacttttattcaaaatatagaaaatttgttgctaaattaggatcttttaggttgctaaatg
gi|13 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----AA--ACATG-CTA-G-CAT------------AG-T-
gi|8 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----AA--ACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|2 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaCAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC--AATCTA--AAGTAT-CA------TAAAACATT---------TTA-------------------TAT---------------------AT-TACA--------------------CAA-AA----GAGT--AT-TTA-GTA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA------T--TTT----------ATA-TA--T--------TACAC--AA---AA-GAGTAT-T-------TAGT----A---------TTC-------------------AAT---------------------AATTAC---------------------CGACAAA--TGCAC--AT-TAAGATAAGAGC-------------TTAAAAAGAGT-AAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CAT-GCATA--C-CATTTTTTTT--GCTTAAACATACT---CT-CA--TCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATAC-ATGCT-T--TCA-AAAGGT-AGTTTTAACAAAGTTTCATACCGCATAAAAGAT-AAT-GCGATGATAGAT-TT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCAA--CTCATCATA-TT--TTCATTTTTGTGACCGTATTTGTTTTCATGTA-TTATATCAGC-T-TTTAA------A-AATGAT--GAGAGTTACCACT-TT--A--GTTTTT--T--TATATCAGATTG------CT---AAAATACATCTGATT-GCGA-CCTTTT-ATAAA-TGAT-AACACATCTC---AAATA-TCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT---TG-AACTTTT-TTCAAATTTTGGTGGC---ATA---TCA--TGAAATATCTGTC-ATA-TT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-TCT---AT-AAA-T-CAA-TGGATTATCTTGTAAAAAATTTACCATTTCC-AAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTA-GTCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGTAGTGGATGTTTTTACGTTGCAACACTAGCTCA-TTTTTTCTCGATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAA--ATTTCT---ACTCTAAAGTTGAATTAAA---GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAA-TACAGTGTTTCAGTACC-AATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATT-TATGTT-----------ttcaataattaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|9 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTGTGTAC--AA---AT-GAGTAT-GA------TAAA----C---------TTA-------------------AAT---------------------A--TACAAAAAGTTCATTTCATAATACCAA-ACA--TGAGT--AT-TAAGATAAGG---------------TTAAAA----A-GGATA-TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT-------A---AAAAAAACTA-----CA--CTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-AC-ATG-C-T--TCA-AAAGGT-AGTTTTAACAAAGTT-GATAG---A-AAAAGAT-AATTGA----ATATAT-TT-AA-GCAATTTTT-----T-T--GTAT--ATT-
gi|21 : atcataaacgatatttattacctaccttaaatnacagcttaccttaaatctcatgagtttgtttaggccgcctgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntAGG---------------TTAAAA----A-GGATA-TAAACACAC--G-GT-TGC-------
gi|14 : -T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-AC-ATT-C-T--TCA-AAAGGT-AGTTTTAACAAAGAT-CATAC---A-AAAAGAT-AATTGC----ATATAT-TTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA
gi|10 : T-----T-T--GTAT--ATT-ACTC-ATAGCAA--CC----A-A-TT--TTC------------------GTTT-CA---A-TT-TATT-G--C-TT-AA------A-AA--ATTTAA----GACCACT-TT--AG-TTTTTT--T--TAT------TTG------GCTCGATAA--T-TC-GATT-G-GAGCCTTTT-TTAAAATGAT-AACTCATT-----AAA-A-C-TA-ATGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT---TGCAA-TTTT-T-CAAATTTTGGT--CT--ATA---TCAT-T--AAT-----TTGAT-TTT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAATT-TCC---ATGAAG-T-CAATTGGCTAATC-T-T-AAAAATTTA-CACTTTCAAA--T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-C-TTT----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGTA--GGAT-TTTTAG-GTTGCTAA
gi|16 : GCAA--CA----A-A-TT--TTC------------------GTTTTCA---A-TT-TATTCG--C-TTAAA------AGAA--AT--AA----TACCACT-TT--A--TTTTTTTCT--TAT------TTG------GT---AGAA--CATC-GATT-G-G
gi|17 : -TT--TTC------------------GTTTTCA---A-TT-TATTCG--C-TTTAA------A-AAG-AT--AA----TACCACT-TT--AGTTTTTTT--T--TAT------TTG------
gi|1 : TA-T-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATAT-TGCAACTTTT-T-CAAATTTTGGT--AA--ATG---TCA--T--AAT-----TCGGTATTT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-TCC---AT-TAA-T-CAA-TAGATTACCTT-T-GAATATTTA-CACCTTC-AA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTT-GTCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATTA--GGATCTTTTAG-GTTGCTAAAT--G
gi|12 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataatcaaatgattagtctttgtttcacatggcataaaatatgctagcatagataagaaaacgttttttgctgtgatatatcatgtatgcaaatgagtattcaatactctaaatatacaaaggttcaatttcatggataccaaaaaagtgagcgcatgtatataaggaataacttataggttttaaaggatagtaaacacaggttgctaaccttccattatgtcacacatggcaaactcatttttaaaaaaaactaacaattttttaggtctgcattagtgatataaatgataaatgttgtaaagagagtgagaacatgttaattatagaggtagttgtacatagtttctgagaaaagacgaattgcatatttgtaaagcattttttatgtatataccaacaaccaattgttccgttttcaagttcatcgtgtttaagaatgaaaagaaataacactttcagtttttttcttatttggtagaaaacgatttggacttttataaatgatatacattaaaatcaatgaaannnnnnnnnnnnnnnnnnnnnnnnngTTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT---TGCTACTTTTTT-CAAATTTTGGT--AA--AAT---TCA--T--AAT-----TCTGTATTA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-TAC---AT-AAA-T-CAA-TGGACTATCTT-T-AAAA
gi|20 : TTGGT--CA--ATA---TCA--T--AAT-----TCGGTATTT---T--TCAT-CT-CGC-TGTAG
gi|18 : T-GTCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGTA--GGATGTTTTAC-GTTGC
gi|15 : -TTTTCTCT--GTAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGG-TAA--A-ATTTTAAGACATCTAATT-TTTTAAA---GA------TTTGA-CATATATG-------CTCCCTACA
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 11 333333333 2222222222 111 11 11111 111111111111 1111 1 11111 2222 1111111111 1111 333333333333333333 222222222 222222222 11 22222222222 111111 444444444444444444444444444444 111111 1 33333 111 1111 111 1 111111 11111 1111 111 1 11111 1111 111 33333333333 111 11 111 1 222 33333333 11 111 1 1 3333333333 111 111 11 11 222222 1 333333333 888888888888888888888888888888888888888888888 333 1 333 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 44 6 6 99 6 111111111 3 7777777777 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 5 1 55555 5 5 0000 5 5 5 5555555555 66 5 5 5 66 2222 5 5 66 666666666666666666 3 5 888 5 9999 0 5 000000000 5 66 000000000 888 5 11 66 66 33333333333 444444 333333333333333333333333333333 666666 5 5 6 0 6 6 6 3 44444 6 6 6 6 5 5 000 0 5 5 7777 777 0 5 1 000000 888 44444 5 0 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 1 66666 4444 6 99 444 6 3 6 6 66666666666 99 6 6 000 2 55 99 555 0 777 66666666 33 777 0 2 3 0 2 2 0000000000 777 22 000 33 33 888888 0 666666666 1 999999999999999999999999999999999999999999999 777 3 777 0 1 1 999 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... .. . . .. . ......... . .......... ... . .. . ..... ............ .. . .... . . . . .. . . . . . ..... . . .... . . . .......... .. . . . .. .... . . .. .................. . . ... . .... . . ......... . .. ......... ... . .. .. .. ........... ...... .............................. ...... . . . . . . . . ..... . . . . . . ... . . . .... ... . . . ...... ... ..... . . . . ... .. . . . .. . .... ... . ... . . . . ... . . ..... .... . .. ... . . . . ........... .. . . ... . .. .. ... . ... ........ .. ... . . . . . . .......... ... .. ... .. .. ...... . ......... . ............................................. ... . ... . . . ... ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 33 7 7 22 7 777777777 5 0000000000 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 0 4 99999 7 0 0000 7 7 7 5555555555 99 0 7 7 99 1111 7 0 99 999999999999999999 2 0 888 0 9999 4 0 000000000 0 99 444444444 888 0 99 99 99 88888888888 444444 777777777777777777777777777777 444444 7 7 7 8 7 7 7 3 22222 7 7 7 7 7 7 000 1 7 7 9999 999 7 7 4 444444 888 88888 0 2 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 7 00000 2222 7 22 000 0 5 7 7 55555555555 22 7 7 888 5 88 22 888 0 000 22222222 88 555 0 0 2 0 5 5 8888888888 555 00 222 88 88 888888 0 888888888 0 333333333333333333333333333333333333333333333 333 3 000 7 0 0 777 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----CA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATTT----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANTA--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTT-CTCTCG-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGGTAA--A-----A-TCT---AACATTTAATT-TTTT--AAA--GA------TTTGA-CATGTGT-------ACTCCCTACAAATAA----GTTTCA-T-CCAAA-ATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATT-TGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----CA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATTT----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAAGTA--GGATG-TTTTAGGTTGCTAAAC--GCTCATTTT-CTCTCG-TAAA--------TT--GGCCACTTTT---GGT-TGCCACGGTAAC-CACAGTCCTGGGTAA--A-----A-TCT---AACATNNAATT-TTTT--AAA--GA------TTTGA-CATATAT-------NCTCCCTACANATNACAGTGTTTCAGTACCAAATATCATGAAAGGNGTANATCATCAGTCATTTGATCC-ACACTCTCTNCNCATTCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTTA------AAAAAAA-----CTAA-CAAT-TTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAGTT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----CA-A-TTGTTCC------------------GTTTTC-A---AGT-TCATCG--TGTTTAAG-AATGAAAAGAA-AT--AA-C-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AAATGATATA--CATTAAAATC-AATGA-AA-NNNNNN-NNNNN-NNNN-NNN-NNNNN----NNGTA-T-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATAT-TGCAACTTTT-T-CAAATTTTGGT--AA--ATG---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACCTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATTA--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----CA-A-TT--TTC------------------GTTT-C-A---ATT-TATT-G--C-TT-AAA-A---------A-ATTTAA-G-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGATA------A--T-T------C-GATTG-GAGCCTTTT-TTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT---TGCAA-TTTT-T-CAAATTTTGGT--CT--ATA---TCA--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACTTTCAAA-T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-CTTT-----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGTA--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT---TGCTACTTTTTT-CAAATTTTGGT--AA--AAT---TCA--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAGAT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTT-CTCT-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCT-GGTAA--A-----A-TTTTAAGACATCTAATT-TTTT--AAA--GA------TTTGA-CATATAT-------GCTCCCTACA
gi|16 : GCA--AC----AA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTAAAAGA---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-G
gi|17 : -TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------AGAT--AA-T-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : TG-TCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGTA--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CATG-CATA--C-CATTTTTTTTGCTTAAACATA-----CT---CT-CATCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAGTTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATCATA-TT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCAG--C-TTTTAA-A---------A-AT--GA-TGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AAA------ATACAT------CTGATTGCGA-CCTTTT-ATAAA-TGAT-AACACATCTC---AAATA-TCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT---TG-AACTTTT-TTCAAATTTTGGTGGC---ATA---TCA--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATTTCCAAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTAG-TCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGTAGTGGATGTTTTTACGTTGCAACACTAGCTCATTTT-TTCTCGATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAA--ATTTCTACTCT---AAAGTTGAA-----TT--AAA--GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAAT-ACAGTGTTTCAGTACC-AATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATT-TATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAA------AAAAAAAAAAAACTAA-CTACATTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA--T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----CA-A-TT--TTC-------------------TTTTCAA---ATC-TATTCG--T-TTTAAA-A---------A-AT--AA-A-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AGA------AT-CAT------C-GATTG-GA-CC-TTT-ATAAA-TGAT-AGC-CATTTTAAGAATTA-T-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA---TGCAAACTTT-T-TAAATTTTTGT--CAAGATATTTTCACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CAC---CAA--TTAAGTGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C-TGG---A--C-C---TTTA------AAAAA-------------TACATTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTTA-CAAAGTTTCATAC---A-AAAAGAG-AAT-AC----ATATATT--AA-GCAA-TTTT----------GTATTAATT-AC-TGATAGCA--AC----CA-AATT--TTT------------------GTTT-C-A---ATT-TAT-CGAGT-TTTAAA-A---------A-AA--AAAT-------AC---CACT-TTA--GTTTT--T--T------------AT------GTG--------------T---AGA------AA-CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CATT-----AAATAAT-AT-ATGTGCCGCG-TTTTCT-GCT-ACATGAG---C-TTGAAA-ATT-T----AAAAAAAAAATGCAACTTTT-TTCAAATTTTGGT--CA--ATA---TCAA-T--AAT-TCG-T-AT-TT---T---CAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACTTTCA---T--AG----AT-T-AT--ACTGAAT---ATGTTATT-G-TCTGA-CTTT-----------ACCCAAAA--TA---GAAATTT-T------TTAAATTAA-GGATG-TTTTAG-TTGCTAAAT--GCTCATTTTTCTCT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATA-----A-TCT---AACATTCTATT-TTTTTCAAAACGA------TTTGATCATGTA--------ACTCCCTACACATAA----GTTTCA-T-CCAAA-ATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCA-TCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT--G------AAAAAAA-----CTAAACTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----TA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--T-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATT-----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGAT--CA--ATA---TCA--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGACT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATTA--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTT-CTCTTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAA--A-----A-TCT---AACATATAATTATTTT--TAA--GA------TTTGA-CATGTGT-------ACTCCCTACAAA-AA----GTTTCA-T-CCAA--ATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCAT--TGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT----------AAAAAA-------AA-CTACACTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 11 333333333 2222222222 111 11 11111 111111111111 1111 1 11111 2222 1111111111 1111 333333333333333333 222222222 222222222 11 22222222222 111111 444444444444444444444444444444 111111 1 33333 111 1111 111 1 111111 11111 1111 111 1 11111 1111 111 33333333333 111 11 11 1 222 33333333 11 111 1 1 3333333 111 111 111 1 222222 1 333333333 2222 111 333333 1 33333 222 1 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 44 6 6 99 6 111111111 3 7777777777 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 5 1 55555 5 5 0000 5 5 5 5555555555 66 5 5 5 66 2222 5 5 66 666666666666666666 3 5 888 5 9999 0 5 000000000 5 66 000000000 888 5 11 66 66 33333333333 444444 333333333333333333333333333333 666666 5 5 6 0 6 6 6 3 44444 6 6 6 6 5 5 000 0 5 5 7777 777 0 5 1 000000 888 44444 5 0 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 1 66666 4444 6 99 444 6 3 6 6 66666666666 99 6 6 000 1 55 99 33 0 777 66666666 33 777 0 3 0 2 2 9999999 777 22 000 777 0 888888 0 666666666 7 2222 777 7 888888 3 33333 333 3 333 7 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... .. . . .. . ......... . .......... ... . .. . ..... ............ .. . .... . . . . .. . . . . . ..... . . .... . . . .......... .. . . . .. .... . . .. .................. . . ... . .... . . ......... . .. ......... ... . .. .. .. ........... ...... .............................. ...... . . . . . . . . ..... . . . . . . ... . . . .... ... . . . ...... ... ..... . . . . ... .. . . . .. . .... ... . ... . . . . ... . . ..... .... . .. ... . . . . ........... .. . . ... . .. .. .. . ... ........ .. ... . . . . . ....... ... .. ... ... . ...... . ......... . .... ... . ...... . ..... ... . ... . ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 33 7 7 22 7 777777777 5 0000000000 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 0 4 99999 7 0 0000 7 7 7 5555555555 99 0 7 7 99 1111 7 0 99 999999999999999999 2 0 888 0 9999 4 0 000000000 0 99 444444444 888 0 99 99 99 88888888888 444444 777777777777777777777777777777 444444 7 7 7 8 7 7 7 3 22222 7 7 7 7 7 7 000 1 7 7 9999 999 7 7 4 444444 888 88888 0 2 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 7 00000 2222 7 22 000 0 5 7 7 55555555555 22 7 7 888 0 88 22 88 0 000 22222222 88 555 0 2 0 5 5 8888888 555 00 222 555 0 888888 0 555555555 3 7777 777 3 333333 3 33333 333 3 333 3 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----CA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATTT----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANTA--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTT-CTCTCG-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGGTAAAT----A-TCT---AACATTTAATT-TTTT---AAA-GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----CA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATTT----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANTA--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTT-CTCTCG-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGGTAAA-----A-TCT---AACATTTAATT-TTTT---AAA-GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTTA------AAAAAAA-----CTAA-CAAT-TTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAGTT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----CA-A-TTGTTCC------------------GTTTTC-A---AGT-TCATCG--TGTTTAAG-AATGAAAAGAA-AT--AA-C-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AAATGATATA--CATTAAAATC-AATGA-AA-NNNNNN-NNNNN-NNNN-NNN-NNNNN----NNGTA-T-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATAT-TGCAACTTTT-T-CAAATTTTGGT--AA--ATG---TCA--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACCTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATTA--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----CA-A-TT--TTC------------------GTTT-C-A---ATT-TATT-G--C-TT-AAA-A---------A-ATTTAA-G-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGATA------A--T-T------C-GATTG-GAGCCTTTT-TTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT---TGCAA-TTTT-T-CAAATTTTGGT--CT--ATA---TCA--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACTTTCAAA-T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-CTTT-----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGTA--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT---TGCTACTTTTTT-CAAATTTTGGT--AA--AAT---TCA--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAGAT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTT-CTCT-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCT-GGTAAA-----A-TTTTAAGACATCTAATT-TTTT---AAA-GA------TTTGA-CATATATG-------CTCCCTACA
gi|16 : GCA--AC----AA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTAAAAGA---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-G
gi|17 : -TT--TTC------------------GTTTTC-A---ATT-TATTCG--C-TTTAAA-A---------AGAT--AA-T-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : TG-TCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGTA--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CATG-CATA--C-CATTTTTTTTGCTTAAACATA-----CT---CT-CATCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAGTTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATCATA-TT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCAG--C-TTTTAA-A---------A-AT--GA-TGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AAA------ATACAT------CTGATTGCGA-CCTTTT-ATAAA-TGAT-AACACATCTC---AAATA-TCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT---TG-AACTTTT-TTCAAATTTTGGTGGC---ATA---TCA--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATTTCCAAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTAG-TCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGTAGTGGATGTTTTTACGTTGCAACACTAGCTCATTTT-TTCTCGATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAAATTTCTACTCT---AAAGTTGAA-----TT---AAA-GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAATACAGTGTTTCAGTACCAATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATTTATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TCA--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAA------AAAAAAAAAAAACTAA-CTACATTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA--T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----CA-A-TT--TTC-------------------TTTTCAA---ATC-TATTCG--T-TTTAAA-A---------A-AT--AA-A-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AGA------AT-CAT------C-GATTG-GA-CC-TTT-ATAAA-TGAT-AGC-CATTTTAAGAATTA-T-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA---TGCAAACTTT-T-TAAATTTTTGT--CAAGATATTTTCACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CAC---CAA--TTAAGTGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C-TGG---A--C-C---TTTA------AAAAA-------------TACATTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTTA-CAAAGTTTCATAC---A-AAAAGAG-AAT-AC----ATATATT--AA-GCAA-TTTT----------GTATTAATT-AC-TGATAGCA--AC----CA-AATT--TTT------------------GTTT-C-A---ATT-TAT-CGAGT-TTTAAA-A---------A-AA--AAAT-------AC---CACT-TTA--GTTTT--T--T------------AT------GTG--------------T---AGA------AA-CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CATT-----AAATAAT-AT-ATGTGCCGCG-TTTTCT-GCT-ACATGAG---C-TTGAAA-ATT-T----AAAAAAAAAATGCAACTTTT-TTCAAATTTTGGT--CA--ATA---TCAA-T--AAT-TCG-T-AT-TT---T---CAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACTTTCA---T--AG----AT-T-AT--ACTGAAT---ATGTTATT-G-TCTGA-CTTT-----------ACCCAAAA--TA---GAAATTT-T------TTAAATTAA-GGATG-TTTTAG-TTGCTAAAT--GCTCATTTTTCTCT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTC-TGGGTAAATA---A-TCT---AACATTCTATT-TTTTTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATA-A--GTTTCA-T-CCAAAATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCATCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT--G------AAAAAAA-----CTAAACTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAGTT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----TA-A-TT--TTC------------------GTTTTC-A---ATT-TATTCG--T-TTTAAA-A---------A-AT--AA-T-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AGA------A--CAT------C-GATTG-GA-CCTTTT-ATAAA-TGAT-AAC-CATT-----AAATA-T-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT---TGCAACTTTT-T-CAAATTTTGAT--CA--ATA---TCA--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGACT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATTA--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTT-CTCTTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAAA-----A-TCT---AACATATAATTATTTT---TAA-GA------TTTGA-CATGTGTA-------CTCCCTACAAA-A-A--GTTTCA-T-CC-AAATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-TTGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT----------AAAAAA-------AA-CTACACTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAGTT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 11 333333333 2222222222 111 11 11111 111111111111 1111 11111 2222 11111 111111 333333333333333333 222222222 1111111 111 33333333333333333333333333333333333333333333333333333 111111 1 22222 111 2222 111111 11 1111 111 1 11111 1111 111 2222222222 111 111 11 2222 33333333 11 111 1 1 222 111 1 111 11 11 222222 1 333333333 2222 111 333333 1 33333 222 1 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 44 6 6 99 6 111111111 3 7777777777 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 0 5 5 55555 5 0000 5 5 5 22222 5 66 66 5 5 5 66 333333 5 66 666666666666666666 5 888 5 0 66 5 55 5 000000000 5 66 6666666 888 5 555 66 66 77777777777777777777777777777777777777777777777777777 666666 5 5 6 77 6 6 3 0 66666 6 6 6 6 1 5 5 000 0 5 5 7777 77 66 5 5 000000 888 5 66 11 5 2 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 1 66666 4444 6 99 444 66 6 6 9999999999 777 6 6 000 1 6 99 99 6 33 6 4444 66666666 33 777 0 3 0 2 2 333 777 3 5 0 777 33 33 888888 0 666666666 7 2222 777 7 888888 3 33333 333 3 333 7 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... .. . . .. . ......... . .......... ... . .. . ..... ............ .. . .... . . . . .. . . . . . . ..... . .... . . . ..... . .. .. . . . .. ...... . .. .................. . ... . . .. . .. . ......... . .. ....... ... . ... .. .. ..................................................... ...... . . . .. . . . . ..... . . . . . . . ... . . . .... .. .. . . ...... ... . .. .. . . . . ... .. . . . .. . .... ... . ... . . . . ... . . ..... .... . .. ... .. . . .......... ... . . ... . . .. .. . .. . .... ........ .. ... . . . . . ... ... . . . ... .. .. ...... . ......... . .... ... . ...... . ..... ... . ... . ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 33 7 7 22 7 777777777 5 0000000000 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 1 7 7 99999 7 0000 7 7 7 55555 0 99 99 0 7 7 99 777777 7 99 999999999999999999 0 888 0 4 99 0 44 0 000000000 0 99 2222222 888 0 000 99 99 99999999999999999999999999999999999999999999999999999 444444 7 7 7 55 7 7 3 8 00000 7 7 7 7 4 7 7 000 1 7 7 9999 99 44 7 7 444444 888 0 99 99 0 5 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 7 00000 2222 7 22 000 88 7 7 2222222222 000 7 7 888 0 7 22 22 7 88 5 5555 22222222 88 555 0 2 0 5 5 000 000 2 0 0 555 88 88 888888 0 555555555 3 7777 777 3 333333 3 33333 333 3 333 3 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACATCTAATT-TT---TT--AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGGTAAAT-ATCTA--ACATTTAATT-TT---TT--AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTTA------AAAAAAA-----CTAA-CAAT-TTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAG-TT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----C-A-ATTGTTCC------------------GTTTTC-A---AGT-TCATC--GTGTTT-AAG-AATGAAAAGAA-AT--AAC-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AA-ATGATATA--CATTAAAATC-AATGA-AA-NN-NNNNNNNNN-NNNN-NNN-NNNNN----NNGT-AT-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATATTGCAAC-TTTT-T-CAAATTTTGGT--AA--ATG---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACCTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATT-A--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----C-A-ATT--TTC------------------GTTT-C-A---ATT-TATT---GC-TT--AAA-A---------A-ATTTAAG-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGAT-A------A--T-T------C-GATTG-GAGCC-TTTTTTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT--TGCAA--TTTT-T-CAAATTTTGGT--CT--ATA---TC-A--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACTTTCAAA-T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-CTTT-----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGT-A--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT--TGCTAC-TTTTTT-CAAATTTTGGT--AA--AAT---TC-A--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAG-AT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTTCTCT--G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGTAAAAT--TTTAAGACATCTAATT-TT---TT--AAA--GA------TTTGA-CATATATG-------CTCCCTACA
gi|16 : GCA--AC----A-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTA-AAAGA---------A-AT--AAT-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-G
gi|17 : TT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------AGAT--AAT-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : TG-TCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGT-A--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CATG-CATA--C-CATTTTTTTTGCTTAAACATA-----CT---CT-CATCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAG-TTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATC-ATATT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCA--GC-TTT-TAA-A---------A-AT--GATGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AA-A------ATACAT------CTGATTGCGA-CC-TTTTATAAA-TGAT-AACACATCTC---AAAT-ATCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT--TG-AAC-TTTT-TTCAAATTTTGGTGGC---ATA---TC-A--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATTTCCAAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTAG-TCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGT-AGTGGATGTTTTTACGTTGCAACACTAGCTCATTTTTTCTC-GATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAAAT-TTCT---AC-TCTAAAG-TTGAATT--AAA--GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAATACAGTGTTTCAGTACCAATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATTTATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAA------AAAAAAAAAAAACTAA-CTACATTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA---T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----C-A-ATT--TTC-------------------TTTTCAA---ATC-TATTC--GT-TTT-AAA-A---------A-AT--AAA-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AG-A------AT-CAT------C-GATTG-GA-CC--TTTATAAA-TGAT-AGC-CATTTTAAGAATT-AT-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA--TGCAAA-CTTT-T-TAAATTTTTGT--CAAGATATTTTC-ACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CAC---CAA--TTAAGTGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C-TGG---A--C-C---TTTA------AAAAA-------------TACATTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTT-ACAAAGTTT-CATAC---A-AAAAGAG-AA-TAC----ATATA-TT-AA-GCAA---TT-----T-T--GTATTAATT-AC-TGATAGCA--AC----CAA-ATT--TTT------------------G-TTTC-A---ATT-TA-TCGAGT-TTTAAAA-A---------A-AA--AAT-------AC---CACT-TTA---GTTT--T--TT-----------AT------GT-------G-------T---AGAA------A--CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CA-TT----AAATAAT-AT-ATGTGCCGCG-TTTTC-TGCT-ACATGAG----CTTGAAA-ATT-TAAA-AAAAAAA--TGCAACTTTTT-T-CAAATTTTGGT--CA--ATA---TCAA--T--AAT-TC-GT-A--TT---T--TCAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACTTTC-A--T--AG----A--TTAT--ACTGAAT---ATGTTA-TTG-TCTGA-C-TTT----------ACCCAAA----A-TAGAAATTT-T------TTAAATTAA--GGATG-TTTTA-GTTGCTAAAT--GCTCATTTT-TCTCTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATAATCTA--ACATTCTATT-TT---TTTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATA-A--GTTTCA-T-CCAAAATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCATCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT--G------AAAAAAA-----CTAAACTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----T-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GT-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATT-----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGAT--CA--ATA---TC-A--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGACT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATT-A--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTTCTCTT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAAA--ATCTA--ACATATAATTATT---TT--TAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAA-A-A--GTTTCA-T-CC-AAATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-TTGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT----------AAAAAA-------AA-CTACACTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 11 333333333 2222222222 111 11 11111 111111111111 1111 11111 2222 11111 111111 333333333333333333 222222222 1111111 111 33333333333333333333333333333333333333333333333333333 111111 1 22222 111 2222 111111 11 1111 111 1 11111 1111 111 2222222222 111 111 11 2222 33333333 11 111 1 1 222 111 11 1 111 1 11 222222 1 333333333 2222 111 333333 1 33333 222 1 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 44 6 6 99 6 111111111 3 7777777777 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 0 5 5 55555 5 0000 5 5 5 22222 5 66 66 5 5 5 66 333333 5 66 666666666666666666 5 888 5 0 66 5 55 5 000000000 5 66 6666666 888 5 555 66 66 77777777777777777777777777777777777777777777777777777 666666 5 5 6 77 6 6 3 0 66666 6 6 6 6 1 5 5 000 0 5 5 7777 77 66 5 5 000000 888 5 66 11 5 2 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 1 66666 4444 6 99 444 66 6 6 9999999999 777 6 6 000 1 6 99 99 6 33 6 4444 66666666 33 777 0 3 0 2 1 333 777 33 0 777 0 33 888888 0 666666666 7 2222 777 7 888888 3 33333 333 3 333 7 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... .. . . .. . ......... . .......... ... . .. . ..... ............ .. . .... . . . . .. . . . . . . ..... . .... . . . ..... . .. .. . . . .. ...... . .. .................. . ... . . .. . .. . ......... . .. ....... ... . ... .. .. ..................................................... ...... . . . .. . . . . ..... . . . . . . . ... . . . .... .. .. . . ...... ... . .. .. . . . . ... .. . . . .. . .... ... . ... . . . . ... . . ..... .... . .. ... .. . . .......... ... . . ... . . .. .. . .. . .... ........ .. ... . . . . . ... ... .. . ... . .. ...... . ......... . .... ... . ...... . ..... ... . ... . ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 33 7 7 22 7 777777777 5 0000000000 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 1 7 7 99999 7 0000 7 7 7 55555 0 99 99 0 7 7 99 777777 7 99 999999999999999999 0 888 0 4 99 0 44 0 000000000 0 99 2222222 888 0 000 99 99 99999999999999999999999999999999999999999999999999999 444444 7 7 7 55 7 7 3 8 00000 7 7 7 7 4 7 7 000 1 7 7 9999 99 44 7 7 444444 888 0 99 99 0 5 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 7 00000 2222 7 22 000 88 7 7 2222222222 000 7 7 888 0 7 22 22 7 88 5 5555 22222222 88 555 0 2 0 5 0 000 000 22 0 555 0 88 888888 0 555555555 3 7777 777 3 333333 3 33333 333 3 333 3 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTTA------AAAAAAA-----CTAA-CAAT-TTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAG-TT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----C-A-ATTGTTCC------------------GTTTTC-A---AGT-TCATC--GTGTTT-AAG-AATGAAAAGAA-AT--AAC-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AA-ATGATATA--CATTAAAATC-AATGA-AA-NN-NNNNNNNNN-NNNN-NNN-NNNNN----NNGT-AT-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATATTGCAAC-TTTT-T-CAAATTTTGGT--AA--ATG---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACCTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATT-A--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----C-A-ATT--TTC------------------GTTT-C-A---ATT-TATT---GC-TT--AAA-A---------A-ATTTAAG-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGAT-A------A--T-T------C-GATTG-GAGCC-TTTTTTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT--TGCAA--TTTT-T-CAAATTTTGGT--CT--ATA---TC-A--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACTTTCAAA-T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-CTTT-----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGT-A--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT--TGCTAC-TTTTTT-CAAATTTTGGT--AA--AAT---TC-A--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAG-AT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTTCTCT--G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGTAAAAT--TTTAAGACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATATATG-------CTCCCTACA
gi|16 : GCA--AC----A-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTA-AAAGA---------A-AT--AAT-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-G
gi|17 : TT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------AGAT--AAT-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : TG-TCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGT-A--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CATG-CATA--C-CATTTTTTTTGCTTAAACATA-----CT---CT-CATCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAG-TTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATC-ATATT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCA--GC-TTT-TAA-A---------A-AT--GATGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AA-A------ATACAT------CTGATTGCGA-CC-TTTTATAAA-TGAT-AACACATCTC---AAAT-ATCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT--TG-AAC-TTTT-TTCAAATTTTGGTGGC---ATA---TC-A--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATTTCCAAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTAG-TCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGT-AGTGGATGTTTTTACGTTGCAACACTAGCTCATTTTTTCTC-GATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAAAT-TTCT---AC--TCTAAAG-TTGAATT-AAA--GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAATACAGTGTTTCAGTACCAATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATTTATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAA------AAAAAAAAAAAACTAA-CTACATTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA---T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----C-A-ATT--TTC-------------------TTTTCAA---ATC-TATTC--GT-TTT-AAA-A---------A-AT--AAA-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AG-A------AT-CAT------C-GATTG-GA-CC--TTTATAAA-TGAT-AGC-CATTTTAAGAATT-AT-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA--TGCAAA-CTTT-T-TAAATTTTTGT--CAAGATATTTTC-ACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CAC---CAA--TTAAGTGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C-TGG---A--C-C---TTTA------AAAAA-------------TACATTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTT-ACAAAGTTT-CATAC---A-AAAAGAG-AA-TAC----ATATA-TT-AA-GCAA---TT-----T-T--GTATTAATT-AC-TGATAGCA--AC----CAA-ATT--TTT------------------G-TTTC-A---ATT-TA-TCGAGT-TTTAAAA-A---------A-AA--AAT-------AC---CACT-TTA---GTTT--T--TT-----------AT------GT-------G-------T---AGAA------A--CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CA-TT----AAATAAT-AT-ATGTGCCGCG-TTTTC-TGCT-ACATGAG----CTTGAAA-ATT-TAAA-AAAAAAA--TGCAACTTTTT-T-CAAATTTTGGT--CA--ATA---TCAA--T--AAT-TC-GT-A--TT---T--TCAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACTTTC-A--T--AG----A--TTAT--ACTGAAT---ATGTTA-TTG-TCTGA-C-TTT----------ACCCAAA----A-TAGAAATTT-T------TTAAATTAA--GGATG-TTTTA-GTTGCTAAAT--GCTCATTTT-TCTCTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATAATCTA--ACATTCTATTT-TT---TTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATA-A--GTTTCA-T-CCAAAATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCATCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT--G------AAAAAAA-----CTAAACTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----T-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GT-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATT-----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGAT--CA--ATA---TC-A--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGACT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATT-A--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTTCTCTT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAAA--ATCTA--ACA-TATAATTATT---TT-TAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAA-A-A--GTTTCA-T-CC-AAATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-TTGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT----------AAAAAA-------AA-CTACACTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 11 333333333 2222222222 111 11 11111 111111111111 1111 11111 2222 11111 111111 333333333333333333 222222222 1111111 111 33333333333333333333333333333333333333333333333333333 111111 1 22222 111 2222 111111 11 1111 111 1 11111 1111 111 2222222222 111 111 11 2222 33333333 11 111 1 1 222 111 11 1 111 1 11 222222 1 333333333 2222 111 333333 1 33333 222 1 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 44 6 6 99 6 111111111 3 7777777777 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 0 5 5 55555 5 0000 5 5 5 22222 5 66 66 5 5 5 66 333333 5 66 666666666666666666 5 888 5 0 66 5 55 5 000000000 5 66 6666666 888 5 555 66 66 77777777777777777777777777777777777777777777777777777 666666 5 5 6 77 6 6 3 0 66666 6 6 6 6 1 5 5 000 0 5 5 7777 77 66 5 5 000000 888 5 66 11 5 2 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 1 66666 4444 6 99 444 66 6 6 9999999999 777 6 6 000 1 6 99 99 6 33 6 4444 66666666 33 777 0 3 0 2 1 333 777 33 0 777 0 33 888888 0 666666666 7 2222 777 7 888888 3 33333 333 3 333 7 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... .. . . .. . ......... . .......... ... . .. . ..... ............ .. . .... . . . . .. . . . . . . ..... . .... . . . ..... . .. .. . . . .. ...... . .. .................. . ... . . .. . .. . ......... . .. ....... ... . ... .. .. ..................................................... ...... . . . .. . . . . ..... . . . . . . . ... . . . .... .. .. . . ...... ... . .. .. . . . . ... .. . . . .. . .... ... . ... . . . . ... . . ..... .... . .. ... .. . . .......... ... . . ... . . .. .. . .. . .... ........ .. ... . . . . . ... ... .. . ... . .. ...... . ......... . .... ... . ...... . ..... ... . ... . ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 33 7 7 22 7 777777777 5 0000000000 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 1 7 7 99999 7 0000 7 7 7 55555 0 99 99 0 7 7 99 777777 7 99 999999999999999999 0 888 0 4 99 0 44 0 000000000 0 99 2222222 888 0 000 99 99 99999999999999999999999999999999999999999999999999999 444444 7 7 7 55 7 7 3 8 00000 7 7 7 7 4 7 7 000 1 7 7 9999 99 44 7 7 444444 888 0 99 99 0 5 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 7 00000 2222 7 22 000 88 7 7 2222222222 000 7 7 888 0 7 22 22 7 88 5 5555 22222222 88 555 0 2 0 5 0 000 000 22 0 555 0 88 888888 0 555555555 3 7777 777 3 333333 3 33333 333 3 333 3 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTTCCATTATGTCACACATGGCA-AACT-CATTTTTA------AAAAAAA-----CTAA-CAAT-TTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAG-TT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----C-A-ATTGTTCC------------------GTTTTC-A---AGT-TCATC--GTGTTT-AAG-AATGAAAAGAA-AT--AAC-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AA-ATGATATA--CATTAAAATC-AATGA-AA-NN-NNNNNNNNN-NNNN-NNN-NNNNN----NNGT-AT-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATATTGCAAC-TTTT-T-CAAATTTTGGT--AA--ATG---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACCTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATT-A--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----C-A-ATT--TTC------------------GTTT-C-A---ATT-TATT---GC-TT--AAA-A---------A-ATTTAAG-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGAT-A------A--T-T------C-GATTG-GAGCC-TTTTTTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT--TGCAA--TTTT-T-CAAATTTTGGT--CT--ATA---TC-A--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACTTTCAAA-T--AG----ATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-CTTT-----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGT-A--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT--TGCTAC-TTTTTT-CAAATTTTGGT--AA--AAT---TC-A--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAG-AT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTTCTCT--G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGTAAAAT--TTTAAGACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATATATG-------CTCCCTACA
gi|16 : GCA--AC----A-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTA-AAAGA---------A-AT--AAT-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-G
gi|17 : TT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------AGAT--AAT-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : TG-TCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGT-A--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATTT-AATAGCTCGC-CATG-CATA--C-CATTTTTTTTGCTTAAACATA-----CT---CT-CATCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAG-TTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATC-ATATT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCA--GC-TTT-TAA-A---------A-AT--GATGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AA-A------ATACAT------CTGATTGCGA-CC-TTTTATAAA-TGAT-AACACATCTC---AAAT-ATCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT--TG-AAC-TTTT-TTCAAATTTTGGTGGC---ATA---TC-A--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATTTCCAAATT--AG----AT-TTATAAATTGAATTTAATGTT-TTAG-TCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGT-AGTGGATGTTTTTACGTTGCAACACTAGCTCATTTTTTCTC-GATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAAAT-TTCT---AC--TCTAAAG-TTGAATT-AAA--GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAATACAGTGTTTCAGTACCAATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATTTATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-GT--GC-------TAACCTTGTATTTAGTCAC-CATGGCA-A--CGCATTTTAA------AAAAAAAAAAAACTAA-CTACATTT---T-AG-TT-G--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA---T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----C-A-ATT--TTC-------------------TTTTCAA---ATC-TATTC--GT-TTT-AAA-A---------A-AT--AAA-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AG-A------AT-CAT------C-GATTG-GA-CC--TTTATAAA-TGAT-AGC-CATTTTAAGAATT-AT-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA--TGCAAA-CTTT-T-TAAATTTTTGT--CAAGATATTTTC-ACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CAC---CAA--TTAAGTGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTTG-ATTATTCCAC-C-TGG---A--C-C---TTTA------AAAAA-------------TACATTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTT-ACAAAGTTT-CATAC---A-AAAAGAG-AA-TAC----ATATA-TT-AA-GCAA---TT-----T-T--GTATTAATT-AC-TGATAGCA--AC----CAA-ATT--TTT------------------G-TTTC-A---ATT-TA-TCGAGT-TTTAAAA-A---------A-AA--AAT-------AC---CACT-TTA---GTTT--T--TT-----------AT------GT-------G-------T---AGAA------A--CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CA-TT----AAATAAT-AT-ATGTGCCGCG-TTTTC-TGCT-ACATGAG----CTTGAAA-ATT-TAAA-AAAAAAA--TGCAACTTTTT-T-CAAATTTTGGT--CA--ATA---TCAA--T--AAT-TC-GT-A--TT---T--TCAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACTTTC-A--T--AG----A--TTAT--ACTGAAT---ATGTTA-TTG-TCTGA-C-TTT----------ACCCAAA----A-TAGAAATTT-T------TTAAATTAA--GGATG-TTTTA-GTTGCTAAAT--GCTCATTTT-TCTCTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATAATCTA--ACATTCTATTT-TT---TTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATA-A--GTTTCA-T-CCAAAATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCATCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTG-ATTATGTCAC-CATTGCA-A--C-CATTT--G------AAAAAAA-----CTAAACTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----T-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GT-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATT-----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGAT--CA--ATA---TC-A--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGACT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATT-A--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTTCTCTT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAAA--ATCTA--ACA-TATAATTATT---TT-TAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAA-A-A--GTTTCA-T-CC-AAATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-TTGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTTC-ATTATGTCAC-CATGGCA-A--C-CATTT----------AAAAAA-------AA-CTACACTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
blockSeqs : G G TG . TT T . CT T C G CTCTATGTTTGT . T . AACA CACA CC AGAC A TAACCT CTA TCA CTTAAAGATATACAAAAAGTTTCAATTTTCATAA T C GTAT . . G GC . . A AATAA CA C A GGCATCT GT . T . G TTTTTGCTT T AAAAACTAA GTC . C G TTTG TGGCTCT . A TTTG T T C C . T . T T T CGCAT . GATG A . T GTGGG . TG TA T T G AG TCATC T . ATTTTTGTGACCGTATTT A TGT A GA . TA G . G TT GAGAGTT . G GTT . TC ATATCAGATTGCTAAAATA . T C G TT A C T TTAAG A C G G T T T GGC G C TTAA . CT T T CAAG TTT A CT GA A G C A TCA CA G G T GA A CATT TT T AAA G G T GTA C T ATT TGAC A AA TTA TT G T TGTTAATGTA AAT T C AAC G A GT GT G TA T CGA AGGAACCC GC TGG A A T C G TAA A AT A GAA C AC TTGGTT T TCTCTCTCT T A T A . . . . A . T .
blockSeqs : . . . . T . . . . T . . . . . AAAA . . . . AGTCT T CA CTTAAATTACAAATAGTTCATTTCATAAA . . . . . G . . . . . . . . . T . . . . TAA A CTAAA . . A G T TA . . . . . . . . . . . . . A . AT . . . . . . . . . . . CA . . . . . . . . A . . . . . . . GT . . ATTTGGAGTTTGTAGAAT . . . . T . . A TC . . . . T . . . . . AAA . C . . GGC . . . T . T . . . . . . . . . G TA . . T . . T . T TTA . . . . AT . . . T . . A G . . G C . C CTA . . . . A . C G TT A A . . . . . . TA . A T . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . TCC . CA CTTAAATATACAAAAAGTTCATTTCATAA . . . . . . . . . . . . . . . G . . . . TTA A CT . . C G T TA . . . . . . . . . . . . . A . . . . . . . . . . . . . C . . . . . . . . T . . . . . . . T . . ATTTGGCTCGATAA . . . . T . . . A . . . . T . . . . . A . C . . CT . . . . . T . . . . . . . . . . T . . . . . T . T AT . . . . T . . . T . . A G . . G C . . TA . . . . . . . C A . . . . . . . . A
blockSeqs : . . . . . . . . . . . . . . . . . . . . TCC . CA ACATTTTATATATTA . . . . . . . . . . . . . . . G . . . . G A AA . . T G T TA . . . . . . . . . . . . . A . . . . . . . . . . . . . A . . . . . . . . T . . . . . . . G . . ATTTGGTAGAA . . . . T . . . T . . . . T . . . . . . . A . . AA . . . . . G . . . . . . . . . . T . . . . . T . T T . . . . A . . . A . . A T . . G G
blockSeqs : . . . . . . . . . . . . . . . . . . . . ACC . CA ATTCAATAA . . . . . . . . . . . . . . . C . . . . . . . . . . . T TA . . . . . . . . . . . . . A . . . . . . . . . . . . . C . . . . . . . . T . . . . . . . G . . ATGTGTAGAAA . . . . . . . . . . . . . . . . . . . . . C . . CA . . . . . G . . . . . . . . . . T . . . . . T . . T . . . . . . . . . . T . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . T . GA CTTAAATA . . . . . . . . . . . . . . . . TA . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . T . . . . . . . T . . ATTTGGTAGAA . . . . . . . . . . . . . . CA . . . . . G . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . T CTTAAATA . . . . . . . . . . . . . . . . . . . . . . . . . CA . . . . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : **** *** TCC***** CA******* **** ** ****** ****** ***** N* ** CTA******* C* T**** TA********** ** ** ** ********* *** ** ****** ** AT***
originalCons : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAA-----CTAA-CTACATTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAA--T--AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
finalCons : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TATCC-----ATGTGTACAAAT---GAGTATCA-------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTTN-ATTATGTCAC-CATGGCA-A--C-CATTTTTA------AAAAAAACTA-------CTACATTT---TTAG-TTTGC-TTAGGTGT----ATAAATGTA----------TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACTTTCAAAT---AG----AT-TTAT--ACTGAAT---ATGTTATTTG-TCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 1 1111 222222222222 2222 1111 1111 11111111 111 111111111 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 2222 1 222222 111111 22222 1111111 111 3333333333333 222222 111 111 11 11111 111111111111 1111 11111 2222 11111 111111 333333333333333333 222222222 1111111 111 33333333333333333333333333333333333333333333333333333 111111 1 2222222 111 2222 111111 11 1111 111 1 1 111 2222222222 111 111 11 2222 33333333 11 111 1 1 222 111 11 1 111 1 11 222222 1 333333333 2222 111 333333 1 33333 222 1 222 44444444444
lowQualScore : 5 5 66 5 11 0 0 0000 66 5 8 4 222222222222 4 4 888 1111 2222 77 2222 5 55555555 333 666666666 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 5 5 0000 77 5 1 444444 5 666666 5 00000 77 5 5 8888888 444 6 6 99 6 3 7777777777777 3 333333 000 111 6 11 2 33333 444444444444 77 5 2222 5 5 5 5 77 5 5 5 0 5 5 55555 5 0000 5 5 5 22222 5 66 66 5 5 5 66 333333 5 66 666666666666666666 5 888 5 0 66 5 55 5 000000000 5 66 6666666 888 5 555 66 66 77777777777777777777777777777777777777777777777777777 666666 5 5 6 77 6 6 3 2222222 6 6 6 6 1 5 5 000 0 5 5 7777 77 66 5 5 000000 888 5 66 11 5 2 5 5 888 66 5 5 5 77 5 7777 999 5 000 1 5 5 0 999 6 99 5 6 6 6 99 444 66 6 6 7 9999999999 777 6 6 000 1 6 99 99 6 33 6 4444 66666666 33 777 0 3 0 2 1 333 777 33 0 777 0 33 888888 0 666666666 7 2222 777 7 888888 3 33333 333 3 333 7 33333333333
lowQualScore : . . .. . .. . . .... .. . . . ............ . . ... .... .... .. .... . ........ ... ......... ....................................................................................... . . .... .. . . ...... . ...... . ..... .. . . ....... ... . . .. . . ............. . ...... ... ... . .. . ..... ............ .. . .... . . . . .. . . . . . . ..... . .... . . . ..... . .. .. . . . .. ...... . .. .................. . ... . . .. . .. . ......... . .. ....... ... . ... .. .. ..................................................... ...... . . . .. . . . ....... . . . . . . . ... . . . .... .. .. . . ...... ... . .. .. . . . . ... .. . . . .. . .... ... . ... . . . . ... . .. . . . . .. ... .. . . . .......... ... . . ... . . .. .. . .. . .... ........ .. ... . . . . . ... ... .. . ... . .. ...... . ......... . .... ... . ...... . ..... ... . ... . ...........
lowQualScore : 0 0 99 0 99 4 0 6666 99 0 9 4 888888888888 4 4 888 2222 1111 99 1111 7 00000000 888 666666666 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 7 0000 99 7 4 333333 7 444444 7 00000 99 7 7 6666666 333 7 7 22 7 2 0000000000000 5 000000 888 777 7 88 5 77777 999999999999 99 7 1111 7 7 7 7 99 7 7 7 1 7 7 99999 7 0000 7 7 7 55555 0 99 99 0 7 7 99 777777 7 99 999999999999999999 0 888 0 4 99 0 44 0 000000000 0 99 2222222 888 0 000 99 99 99999999999999999999999999999999999999999999999999999 444444 7 7 7 55 7 7 3 0000000 7 7 7 7 4 7 7 000 1 7 7 9999 99 44 7 7 444444 888 0 99 99 0 5 0 0 888 99 0 0 0 99 7 9999 444 7 000 4 7 7 1 444 7 22 5 7 7 7 22 000 88 7 7 3 2222222222 000 7 7 888 0 7 22 22 7 88 5 5555 22222222 88 555 0 2 0 5 0 000 000 22 0 555 0 88 888888 0 555555555 3 7777 777 3 333333 3 33333 333 3 333 3 55555555555
consensus : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTT-N-ATTATGTCAC-CATGGCA-A--C-CATTTT-----TA------AAAAAAACT--ACTACA--TTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACT--TTCAAA-T-AGAT-TTAT--ACTGAAT---ATGTTATTT-GTCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
Reference ( family-3247 ) : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TTT--TTT----GCTGTGATA-TA--T---CCATGTGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTT-N-ATTATGTCAC-CATGGCA-A--C-CATTTT-----TA------AAAAAAACT--ACTACA--TTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-AA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----C-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CATTT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACT--TTCAAA-T-AGAT-TTAT--ACTGAAT---ATGTTATTT-GTCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTAAANT-A--GGATG-TTTTAGGTTGCTAAAT--GCTCATTTTCTCTC-G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGNTAAAT-ATCTA--ACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAATA-A--GTTTCA-T-CCAAAATC------GGTG-AGAT-----GTCATT---TCC-ACA---TTTGCCCATTTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGA
gi|1 : ATCAAA----T--GATTAGT--CTTTGTTTCACATGGCATAA--AATATG-CTA-G-CAT------------AGAT-AAGAAAA----CG----TTT--TTT----GCTGTGATA-TA--T---C-ATGTATGCAAAT---GAGTATTCAATACTCTAAA----TATACAAAGGTTC-------------------A-AT-------------------TTCATGGA--------------------T-ACCAA-AAAAG--TGAGCGCATGTAT-ATAAGGAATAACTTATAGGTTTTAAA-GGATAG----TAAACACA---G-GT-TGC-------TAACCTT-CCATTATGTCACACATGGCA-AACT-CATTTT-----TA------AAAAAAACT--A--ACAATTTT---TTAGGTCTGCATTAG-TGAT---ATAAATGATAAATG-----TTGTAAAGAGAGT-G----A-GA-A-CATG-TTAAT-TATAGAGG-TAGTTGTA-CATAG-TT-TCTGA---G-AAAAGACGAATTGC----ATATTTGT-AAAGCAT-TTTT-----TAT--GTAT--AT--AC-C-A--ACA--AC----C-A-ATTGTTCC------------------GTTTTC-A---AGT-TCATC--GTGTTT-AAG-AATGAAAAGAA-AT--AAC-------ACTTTCAGT-TTT--TTTCTTAT--TTGGTAGAAAACGAT------TTG------GACTTTTAT---AA-ATGATATA--CATTAAAATC-AATGA-AA-NN-NNNNNNNNN-NNNN-NNN-NNNNN----NNGT-AT-AT-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTCAAAA-ATG-T----AAAAAATATTGCAAC-TTTT-T-CAAATTTTGGT--AA--ATG---TC-A--T--AAT-TCGGT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTACGATACA----TAA-T-T-CC---ATTAA-T-CAAT-AGATTACCTT-T-GAATATTTA-CACC--TTC-AA-T-AGAT-TTAT--ACTGAAT---ATGTTATTT-GTCTGA-CTTTT----------ATTCAAAA--TA-TAGAAAATT-TG--TTGCTAAATT-A--GGATC-TTTTAGGTTGCTAAAT--G
gi|10 : cccttgggttgcgactacccagaaagatatgaaccttcggatcaattcattgtttggtatgaatgaatggattttagtgtattatacagacgagactcatttttatgtaatttttcatgaaaatattcgtacagttcatctttgcaccgacatatttatgaaaaggaataacaaacaacctcacccaaaaaaaacaacaataaaaatattaataataaggcagagtgtttaatatatgaggagcttcgataataaaataaccagtttcctttttactagaatgtgttaaatcgcagtttcttgtcgcagaactgtttagagaaatcaacttcatggatgatgtagctatttcggaattctatttccctatcataactttggatcatcttatctatgtaaaaaccattattatgattggataaccacgaaccaatttattatttcctatttttgaaaactgagagaaagatttattttgcatatcctctcttcagccttaacctttaaatctaatgagttttcttctgttttgcggctagcacctgagctgtctattataacatattatcagcctctacttaaataaaatagggggataT-----T-T--GTAT--ATT-ACTC-ATAGCA--AC----C-A-ATT--TTC------------------GTTT-C-A---ATT-TATT---GC-TT--AAA-A---------A-ATTTAAG-------AC---CACT-TTAG-TTTTT--T--TT-----------AT------TTG------G-------CTCGAT-A------A--T-T------C-GATTG-GAGCC-TTTTTTAAAATGAT-AACTCATTA----AAAC--T-AA--TGTGCCGCG-TTTC--TGCT-A-A-GAG---CCT-GAAA-ATG-T----AAAAAAT--TGCAA--TTTT-T-CAAATTTTGGT--CT--ATA---TC-A--TT-AAT-TTGAT--T-TT---TCATCAC-CT-CGC-TG-AGATG--AT-TT-CGATACAG---TAA-T-TTCC---ATGAAGT-CAATTGGCTAATCTT---AAAAATTTA-CACT--TTCAAA-T-AGATATTAT--ACTGAAT---ATGTCTTCTGGTCTTA-C-TTT----------ACCCAAAAATTA-TAGAAAATT-TA--TTGTTAAAGT-A--GGAT--TTTTAGGTTGCTAA
gi|12 : TTTTTTACT-ACA-GAG---CCTTGTAA-ATG-TTTAAAAAAAAT--TGCTAC-TTTTTT-CAAATTTTGGT--AA--AAT---TC-A--T--AAT-TCTGT-AT-TA---T--TCAC-CT-CGT-TGTAGATG--AT-TTACGATACA----TGA-T-T-AC---ATAAA-T-CAAT-GGACTATCTT-T-AAAA
gi|13 : ATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-
gi|14 : tcatgagtttgttttggccgcctgatttcttgctataaacgatatttattacctaccttaaataaaatggaaa-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATT-CT--T-CA-AAAGG-TAGTTTTAACAAAG-AT-CATAC---A-AAAAGAT-AATTGC----ATATATTTAAA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--
gi|15 : TTTTCTCT--G-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGTAAAAT--TTTAAGACA-TCTAATT-TT---TT-AAA--GA------TTTGA-CATATATG-------CTCCCTACA
gi|16 : GCA--AC----A-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTA-AAAGA---------A-AT--AAT-------AC---CACT-TTA--TTTTT--TTCTT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-G
gi|17 : TT--TTC------------------GTTTTC-A---ATT-TATTC--GC-TTT-AAA-A---------AGAT--AAT-------AC---CACT-TTAGTTTTTT--T--TT-----------AT------TTG------
gi|18 : T-GTCTGA-CTTTT----------ACCCAAAT--TA-TAGAAAATC-TA--TTGTTAAAGT-A--GGATG-TTTTACGTTGC
gi|2 : CAAAA-T-TTGGAT-AGTTTCATGGTTTCTCATGG----GCTAACATG-CTA-GGCATCTCTATGTTTGTGG-T-AA---AA----CACACATTTCCTTTAGACGTTGTGATA-TA--TAACCTATGTGTAC-AATCTAAAGTAT-CA------TAAAACATT---------TTAT------------------ATAT-------------------T------A--------------------C-ACAAA-AGAGTATTTAGT--AT-TCA-ATAA
gi|2 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatcA-G-TAT------------CA-T-AA---AA----CA----TTT--T------------ATA-TA--T--------TACACAAAA---GAGTAT-T-------TAGT----A---------TTC-------------------A-AT-------------------A------A--------------------TTACCGACAAA----TGCAC--AT-TAAGATAAGAGC----TTA-A------AAA-GAGTAAATAATAAAAACACCAGCGT-TGCGGCATCTTAGCATT-T-AATAGCTCGC-CATG-CATA--C-CATTTT-----TTTTGCTTAAACATACT---CT-CA--TCTGTCTTAG-TTTGC-TTAGGTG-TTTGATAGACA-----TGGCTCTTTGTAGAGAG--T-GTTTGA-GATA-CATG-CT--TTCA-AAAGG-TAGTTTTAACAAAG-TTTCATACCGCATAAAAGAT-AAT-GCGATGATAGATTT-AG-GGAA-TTTTGTGGGT-T--GTAT--ATTTAC-C-ATAGCA--ACTCATC-ATATT--TTCATTTTTGTGACCGTATTTGTTTTC-ATGTATTATATCA--GC-TTT-TAA-A---------A-AT--GATGAGAGTTAC---CACT-TTA--GTTTT--T--TT-----------ATATCAGATTG------C-------T---AA-A------ATACAT------CTGATTGCGA-CC-TTTTATAAA-TGAT-AACACATCTC---AAAT-ATCAA-ATGTGCCGCGGTTTTCTTGCTTACA-GAG---CCTTTGAA-AGGCT----AAAAAAT--TG-AAC-TTTT-TTCAAATTTTGGTGGC---ATA---TC-A--TGAAATATCTGTCATATT---T--TAAC-CTGCGC-TGTAGATGGAATATTACGATACACATTTAATT-T-CT---ATAAA-T-CAAT-GGATTATCTTGTAAAAAATTTACCATT--TCCAAATT-AGAT-TTATAAATTGAATTTAATGTT-TTA-GTCTGATCTTTTTGTTAATGTAACCCAAAT--TATTAGAAAATTCTAACTTGTTAAAGT-AGTGGATGTTTTTACGTTGCAACACTAGCTCATTTTTTCTC-GATAGAAGGAACCCTTGCGGCCACTTTTTGGGGTATGCCACTCT--CTCACAGTCCTGGGTAAAT-TTCT---AC--TCTAAAG-TTGAATT-AAA--GATTGGTTTTTGA-CCTATGTCTCTCTCTCTCCTTACAAATACAGTGTTTCAGTACCAATATCATGAAAGGAGTAGATCATCAGTCATTTGATCC-ACACTCTCTGCACATTTATGTTttaccgacaaatgcacattaagataagagcttaaaaagagtaaataataaaaacaccagcgttgcggcatcttagcatttaatagctcgccatgcataccattttttttgcttaaacatactctcatctgtcttagtttgcttaggtgtttgatagacatggctctttgtagagagtgtttgagatacatgctttcaaaaggtagttttaacaaagtttcataccgcataaaagataatgcgatgatagatttagggaattttgtgggttgtatatttaccatagcaactcatcatattttcatttttgtgaccgtatttgttttcatgtattatatcagcttttaaaaatgatgagagttaccactttagtttttttatatcagattgctaaaatacatctgattgcgaccttttataaatgataacacatctcaaatatcaaatgtgccgcggttttcttgcttacagagcctttgaaaggctaaaaaattgaacttttttcaaattttggtggcatatcatgaaatatctgtcatattttaacctgcgctgtagatggaatattacgatacacatttaatttctataaatcaatggattatcttgtaaaaaatttaccatttccaaattagatttataaattgaatttaatgttttagtctgatctttttgttaatgtaacccaaattattagaaaattctaacttgttaaagtagtggatgtttttacgttgcaacactagctcattttttctcgatagaaggaacccttgcggccactttttggggtatgccactctctcacagtcctgggtaaatttctactctaaagttgaattaaagattggtttttgacctatgtctctctctctccttacaaatacagtgtttcagtaccaatatcatgaaaggagtagatcatcagtcatttgatccacactctctgcacatttatgtt
gi|20 : tatctgggtcctttttactgttaaaccatttccacaaacaaccaagttattttttcagtatattgttttgaaagatgagagaagattagatgatgttggcatcctctgcttcagcttaccttagcatactcacaagtttgatttgtggcccgcctgaattctagttataaacgatatttattacctaccttatccaaaatttggatagtttcatggtttctcatgggctaacatgctaggcatctctatgtttgtggtaaaacacacatttcctttagacgttgtgatatataacctatgtgtacaatctaaTTGGT--CA--ATA---TC-A--T--AAT-TCGGT-AT-TT---T--TCAT-CT-CGC-TGTAG
gi|21 : AGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------
gi|3 : ATCAAAA-TGT--GAT-AGTT-AATGGTTTC-CA--G----A--AACATGTCTACG-GAT------------AG-TTAA---AA----CA----TTT--TTG----GCTGTGATAATA--T---CCATATGTACAAATT--GAGAATTCA-------AAA----C---------TTAAAGATATACAAAAAGTTTCA-AT-------------------TTTCATAA--------------------T-ACCAA-AAA----TGAGC--AT-TGA-ATAATG------TTA-A------AAAAGGGTA-----TAAACACAC--G-G--TGC-------TAACCTTGT-ATTTAGTCAC-CATGGCA-A--CGCATTTTAAAAAAA------AAAAAAACTA-ACTACA---TT---TTAG--TTG--TTA--TG-----ATAAATG-----TA-----TTGTAAAGGG--TAG----A-AA-ACCATGCCT--T-CA-AAAGGTTAGTTTTAACAAA---T-CATAC-----AAAAGAT-AATTGCAT--ATATATTT-AA--CAA-TTTT-----T-TTGGTTA--ATT-AC-C-ATAGCAAGAC----C-A-ATT--TTC-------------------TTTTCAA---ATC-TATTC--GT-TTT-AAA-A---------A-AT--AAA-------CC---CACTGTTA--GTTTT--T--TT-----------AT------TTGGAGTTTG-------T---AG-A------AT-CAT------C-GATTG-GA-CC--TTTATAAA-TGAT-AGC-CATTTTAAGAATT-AT-AAGATGTGCCGCG--TTTCTTGCT-ACA-GAGGGCCTTTGAAAGATG-TA---AAAAAAA--TGCAAA-CTTT-T-TAAATTTTTGT--CAAGATATTTTC-ACTT--AAT-TCGGT-AT-TTTCAT--TCACGCT-CGCTTGTAGATA--AT-TTACGATAAT----TAA---T-CCAAAATAAATT-CAAT-GAA--ATC---T-AAAAA-ATA-CACCAATT-AAG-TGACAT-TTAT--A
gi|4 : cccccctggggttcgagttccagaaagaatgaacttttgggtcaattcttatttggtatgaatagaatggattttagtggtattaaggacagacgaacatgttcgttttcatgtacataagtaatttaacggtggtatacagtcgcgcgtagattatttgccaccgaaccatatgttatgcaaagcattaaggcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaaacaactaaataaaaaaataataataatggcagaagttgtcttacaaatgaggagctcctgaaatcataataaatagccagtttccttatcagaatgctaaacatcacagaagaaactgtttgaatcaactcatgaaattgattttaactatttcggaattattattttccctatcatatttggtttttattacgtgtttaacactatttgcccaacaaacaaccaattatttttccatattcttgaaaatgagagaagaaatatatgattttgcattcctttctgttcagcttacctaaatctcatgaatttttgccgccctatttctagttatataaacatatttatacctaccttaaaataaaatgggaaaATCAAAAGT-T--GAT-AGT--AATGGTT-C-CATGG----A--A-CATG-TTATG-CAT------------AG-T-AA---AAAACATA----TTT--TTT----GCTGTGATA-TAAGT---CTATGTATCAAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT-------------------T------ACAAATAGTTCATTTCATAAAT-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAA-GGAAA-----TAAACACAC--G-GTATGC-------TAACCTT-G-ATTATTCCAC-C-TGG---A--C-C---TT-----TA------AAAAA--------TACA--TTT---TTTA-TTTGA-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----ATGA-A-CATG-CT--T-CA-AAAGG-TAGTTTT-ACAAAGTTT-CATAC---A-AAAAGAG-AA-TAC----ATATA-TT-AA-GCAA---TT-----T-T--GTATTAATT-AC-TGATAGCA--AC----CAA-ATT--TTT------------------G-TTTC-A---ATT-TA-TCGAGT-TTTAAAA-A---------A-AA--AAT-------AC---CACT-TTA---GTTT--T--TT-----------AT------GT-------G-------T---AGAA------A--CAT------C-GATTG-GA-CCTTTTTATAAA-TGCTCAAC-CA-TT----AAATAAT-AT-ATGTGCCGCG-TTTTC-TGCT-ACATGAG----CTTGAAA-ATT-TAAA-AAAAAAA--TGCAACTTTTT-T-CAAATTTTGGT--CA--ATA---TCAA--T--AAT-TC-GT-A--TT---T--TCAT-CT-CGC-TGTAGATG--CT-TTACGATACA----TAA-TAT-CC---ATAAA-TGCAAT-GGATTATCTT-T-AAACATTTA-CACT--TTC--A-T-AGA--TTAT--ACTGAAT---ATGTTA-TT-GTCTGA-C-TTT----------ACCCAAA----A-TAGAAATTT-T------TTAAATTAA--GGATG-TTTTA-GTTGCTAAAT--GCTCATTTT-TCTCTA-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGT-CTGGGTAAATAATCTA--ACATTCTATTT-TT---TTCAAAACGA------TTTGATCATGTA-A-------CTCCCTACACATA-A--GTTTCA-T-CCAAAATC------GGTG-ACAT-----GTCATT---TCC-ACA---TTTTCCCATCTGTGTTTTGATGCTTAGTGATGCTTACAGAGAATGAa
gi|5 : ccaacaaacagaccaattatttttccaaagatagatatcttttgaaaatgagaagaaatatattgattgcattactctgcttcagcttaccttaaatctcatgcagtttgtttggccgcctgatttctagttttaacgatattagttacctatccgtaaataaaatggaaaATCAAAA-T-T--GAT-AGT--AATGGTTTC-CATGG----A--CACATG-CTA-G-CAT------------AG-T-AA---AA----CA----TGT--TTT----GCTGTGATA-TA--T---CCATATGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-AT--------------------------A--------------------T-ACCAA-AAA----TGAGC--AT-TAA-ATAAGG------TTA-A------AAT-GGATA-----TAAACACAC--G-GT-TGC-------TAACCTT-G-ATTATGTCAC-CATTGCA-A--C-CA--TT-----TG------AAAAAAACTAAACTACA--TTT---TTAG-TTTGC-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-AA-A-CATG-TT--T-CA-AAAGG-TAGTTTTGACAAAG-TT-CATAC---A-AAAAGAT-AATTGC----ATATATTT-CA-GCAA-TTTT-----T-T--GTAT--ATT-AC-C-ATAGCA--AC----T-A-ATT--TTC------------------GTTTTC-A---ATT-TATTC--GT-TTT-AAA-A---------A-AT--AAT-------AC---CACT-TTA--TTTTT--T--TT-----------AT------TTG------G-------T---AG-A------A--CAT------C-GATTG-GA-CC-TTTTATAAA-TGAT-AAC-CA-TT----AAAT-AT-AA-ATGTGCCGCG-TTTTCTTGCT-ACA-GAG---CCTTGAAA-ATG-T----AAAAAAT--TGCAAC-TTTT-T-CAAATTTTGAT--CA--ATA---TC-A--T--AAT-TCGAT-AT-TT---T--TCAC-CT-CGC-TGTAGATG--AT-TTATGTTACA----TAA-T-T-CC---ATAAA-T-CAAT-GGATTATCTT-T-AAAAATTTA-CACT--TTC-AA-T-AGAT-TTAT--ACTGACT---ATGTTATTT-GTCTGA-CTTTT----------ACCCAAAA--TA-TAGAAAATT-TA--TTGTTATATT-A--GGATG-TTTTTGGCTGCTAAAT--GCTCATTTTCTCTT-A-TAAA--------TT--GGCCACTTTT---GGT-TGCCATGGTAAC-CACAGTCCTGGCTAAA--ATCTA--ACA-TATAATTATT---TT-TAA--GA------TTTGA-CATGTGTA-------CTCCCTACAAA-A-A--GTTTCA-T-CC-AAATC------GGTG-AGAT-----GTCATT---TCCAACA---TTTGCCCA-TTGTGTT-----------TGATGCTTACAGAGAATGA
gi|6 : ATCAAAA-T-T--AAT-AGT--A-TGGTTTC-CATGG----A--AACATG-CTA-A-CAT------------AG-T-AA---AAAAAACA----GTT--TTT----GCTGTGATA-TA--A---CCATACGTACAAAT---GAGTAT-CA------TAAA----C---------TTA-------------------A-A--------------------T------A--------------------T-Actctgaaagactgattaaacgaagaacagtcttttgtgc
gi|8 : attgcaccgaccatatttatgcaaaggcataaaggcaaaaataaaaataaaaaaacaacatgaaaaataataataagcagcagtttttacaagaatcgaggatacccgaatcacaataaatagccagtttcctttcgaatgagtaaagtcacagaaactagtttgaccacgacgtatcgaatttgatgtaactatttccggaattttttccctatcggatatattggttctttattgctgtacaaccatattgtgcatcaaaaacaaccaattcattttcccaatatttgcaaaatgagagacatatcgatttgcattccgtgctgcttcagctaactaatttcacgagttgtttggccgcctgattctgtgtaaacgatatttattacctacctcaaaaaatggaaaATCAAAA-T-T--GAT-AGT--AATGATTCC-CATGG----A--AACATG-CTA-G-CAT------------AG-T-AA---AA----
gi|9 : catgaggagcttctgaaaccacaataaatagccagtttccttttctagaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttatatgatttgcattactctgcttcagcttaccttaaatcttatgagtttgttttggccgcctggtttctaattatcaacgatatttattacctaccttaaataaaatggaaaTGTGTACAAAT---GAGTAT-GA------TAAA----C---------TTA-------------------A-ATATACAAAAAGTTCATTTCAT------AA-------------------T-ACCAA-ACA----TGAGT--AT-TAAGATAAGG------TTA-A------AAA-GGATA-----TAAACACAC--G-GT-TGC-------TACCCTT-C-ATTATGTCAC-CATGGCA-A--C-CATTT--------------AAAAAAA----ACTACA--CTT---TTAG-TTTGT-TTAGGTG-T---ATAAATG-----TA-----TTGTAAAGGG--T-G----A-GA-A-CATG-CT--T-CA-AAAGG-TAGTTTTAACAAAG-TT-GATAG---A-AAAAGAT-AATTGA----ATATATTT-AA-GCAATTTTT-----T-T--GTAT--ATT-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|7 ): CCCTCTCACCCCTGGGGAAGTTTGCAGAAAGAATTAACTATTGGGTCAATTCTTGCTTTGGTATGAATAGAAATGATTTTTAGGAATTAAGGACAGAACGAGATATTCATTTTCATAGTGTAATCTCCATGGAAATTTTGTAACCGTACATGATTTGCACCGAACCATATTATGCAAAGGCATTAAGTGCAAAAATAAAAAAAAAAAGACAACAATTTAAAAAATAATAAGAAGGCAGAGTGTTTTACATAATGAGGAGCTTCTCTGAAATCTAGCAAATAAATAGCCAGTTTAATTTTCTAGAATGTGTAAAGTCACAGAAACTGTTTGACACACTTCATGGAAAATTGATGTAACCTATTTCGGAATTTTATTTCCCCTATCTATTTGTTCTTTATTCTGTTAAAACCCATTATTGTTGCATC
Unaligned ( gi|11 ): TCCCCCCTGGGGTTCGAGTTCCAGAAAGAATGAACTTTTGGGTCAATTCTTGTTCAAGGTATGAATAGAATGGATTTTAGTGTATTAAGGACAGACGAGACATTCATTTTCATGTAATTTTCCATGAAATGTTGTACCGTACGTATAGACCAAGCCACCCTCTGCAA
Unaligned ( gi|19 ): CCCGGGTGTCGAGTTCCAGAAAGAATGACCTTCGGGTCCATATTCTTGTTTGGTATG