lowQualScore : 11111 1 111 2222222 111111111 33 111111 111111 11 111111 111 1 1
lowQualScore : 0 55555 0 3 111 3 8888888 5 0 888888888 11 4 4 66 4 222222 888888 777 4 66 4 4 88 4 444444 5 1 8 000 66 11 66 66 4 6 3 6 3 0 3 3 2 3 3 6 99 3
lowQualScore : . ..... . . ... . ....... . . ......... .. . . .. . ...... ...... ... . .. . . .. . ...... . . . ... .. .. .. .. . . . . . . . . . . . . .. .
lowQualScore : 8 88888 0 2 777 2 3333333 7 1 444444444 66 4 4 11 4 888888 111111 888 4 88 4 4 99 0 444444 0 4 6 000 11 88 11 11 4 7 3 7 3 4 3 6 8 6 9 0 00 2
consensus : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTATCTTTTTTGGTTGTTGTTGTTGT---ATTCATACACA-GTG-CCAACAT--TAAATGA-A------ATTC-----ATTTA---CTTA-ATTAGCGTTCGGCA-TCAAA-TGTGGGTCGCCAT-CATGT------AATAC-GCGAGGGAAG---TAAT--TTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGA-CAG-GGCCTACAA-CATCCAAGTCTGCATTTTAAATATTGAAAAAT
Reference ( gi|2 ) : CGTAGCTAATTTATGTGTTCTGT-AT--GATAGAACT---TGTCTGTGAT-------AGTATCTTTTTTGGTTGTTGTTGTTTT---ATTCAACCACA-GTG-CCAACAT--TAAATGA-A------ATTA-----ATTTA---CTTA-ATGGGCGTTCGGCA-TCAAA-TGTGGGTCGTCAT-CATGT------AATAC-GCGAGGGGAG---TAAT--TTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGA-CAG-GGCATACAA-CATCCAAGTTTGCATTTCAAATATCAAAACAT
gi|5 : CGTAGCTAATTTATGCGTTTTGT-AT--GATATAACT---TG-------------------TCTTTTTTGGTTGTTGTTGTTGT---ATTCATACACA-GTG-CCAACAT--TAAATCA-A------ATTA-----ATTTA---CTGA-ATTAGCGTTCGGCA-TCATA-TGTGGGTCGCCAT-CATGT------AATAC-GCGAGGGAAG---TAAT--T
gi|3 : aatatatgtcacacagtaaaatctcagacgccgaCATAGCTAATTCATATGTTCTGT-ATATGATATAACT---TCTCTGTGATTATGATGAGTATCCTTTTTGGTTGTTGT---------ATTCATACAGA-GTG-CAGACAT--TAAATGC-A------ATTA-----ATTTA---CTTA-ATTAGCGTTTGGCA-TCAAA-TGTGGGTCGCCAT-CATGT------AATAC-ACGAGGGAAG---TAAT--
gi|1 : atatgtcacgcagaaaaaacccagacgccgaCGTAGCTAATTT-TGTGTTCTGTCAT--GATATAACTAATTGTCTGTGATG------AGTGTCTTTTTTGGTTGTTGTAGATCT---------CTACACGTGTCCAACATCATAAATGA-ATGCTTCACTACAACCATTGC---CTCATATAGAGGTTTCGCA-TCAAA-T-----TC--CAT-CATGC------AATACAGCTAGGGAAG---GAAT--T--AATAATCGT--G--CATAATGCAACAC-CA-ACTAA-CACA-CGA-CGG-GCCCTACAA-CATC
gi|6 : taattatatccagaaaacctacagacgccggaCGTAGCAAATTTATGTGTTCTGC-AA--GATATAATT---TGTCTGTGAT-------AGT-CCTTTTTTTTTTTTTATTGTTTTTGTATTTATACAAA-GTG-CCGACTT--TAAATGT-A------ATTC-----ACTCA---CTTA-ATTAGTGTTCCACA-TCAAA-TGTGGGTCTCCATGCATaac
gi|9 : gatatatgtcacacagtaaaaactcgtacgttgaCGTAGCTAATCTATGTGTTCT-----------GAA-----------TGAT-------AGTATCTTTTTTATTGGTTGTTGTCGT---ATTCATACACA-GTG-CCAACAT--TAAATGA-C------ATTC-----ATTTA---CTTA-AT
gi|10 : cgccgaT---TGTCTGTGAT-------AGTATCTTTTTTGGT---------------ATTCA---------------CAT--TAAATGA-A------ATTC-----ATTTAATACTTA-ATTAGCTTTCGGCA-ACAAA-TGTGGGTCGCCAT-TATGT------AATAC-ACGA
gi|4 : TTTTTTGGTTGTTGTT--TGT---ATTCATACACA-GTG-CCAACAT--TAAATGACA------ATTC-----ATTTA---CTTG-ATTAGCATTCGGCAATCAAAATGTGGGTCGCCAT-CATCT------AATAC-GC-AGAAGAATATTAAT--TT-AATAACCTT--GGCCA-AAATGAACA--CA-AC-AACCACACCGATTAGAAGTATAC-A-CATTC
gi|7 : tTGTTGTTGTTGT---ATTCATACACA-GTG-CCAACAT--TAAATGA-A------ATTC-----ATTTA---CTTA-ATTAGAGTTCGACA-TCAAA-TGTGGGTCACCAT-CATGT------AATAC-GCGAGGGAAG---TAAT--TTAAATAATCAT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGA-CAG-GGCCTACAA-CATCCAAGTCTGCATTTttgaaaaatacaccctt
gi|14 : GTTGTTGT---ATTCATACACA-GTG-CCAACAT--AAAATGA-A------ATTC-----CTTGA---CTTA-ATAAGCGTTCGGCA-TCAAA-TGTGGGTCGCCAT-Ctt
gi|12 : CA-TCAAA-TTTGAGTCACGAT-C-TGTGCACGAAATAC-ATAGGGAAAA---TA-T--TTAGATAATCGT--G--CA-AATGGAGCACAAA-AC-AA-CACATCAA-TA
gi|8 : T-CACGA------AAAAC-ACGAGGG-AG---AAATAATAAAAAAAAAAA--G--CA-AATAGAGAAC-AA-ACCAA-CACACCCA-TTG-GGCCTGTAA-CACTCATATCTGCATTTTAAATACTAAAAAAT
gi|13 : ggatcagtg--TTAAATAATCGTCTG--CA-AATGGAACAC-CA-AC-AA-CACACCGA-AAG-GGCCTACAC-CATCCAAGTCTGCATTTTAAATATTGAAAAATgca
gi|18 : --TTAAATAATCGT--G--CA-AATGGAACAC-CT-AC-AA-CAacac
gi|19 : AAATAATCTT--G--CA-AATGGAACACAAA-AC-AA-CACATCGA-tccaagtctgtgacactctt
gi|15 : aatatgtggagaAATCGT--G--CA-AGTGGAACAC-CA-AC-AA-CACACCCA-CAC-GGTCTACAA-CATCCAAGGTAGCATTTTAAATATTGAAAAATttt
gi|21 : AACGC-AACAC-AA-CACATCGA-CAG-GGCCTACAA-CATCAAAGTata
gi|23 : ACAT-CA-AC-AA-CACACCGA-CAG-GGCCTACAA-CATCAAAGTCTGCcgtgc
gi|24 : -CA-AC-AA-CACATCGA-CAG-GGCCTACAACCATCAAAGT
gi|17 : CGA-CAG-GGCCTACAA-CATCAAAGTCTGCATTTTAAATATTGAAATATc
gi|22 : -GGCCTACAA-CATCCAAGTCTGCATTTTAAATATTGAAAAATactccctta
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGAAAAATACACTCTTA
Unaligned ( gi|16 ): CTAATGTCACACAGTAAAAAACTCAGACGCCGACGTACATGTGATCTCTGTATGATA
Unaligned ( gi|20 ): AACACACCGATTGTGCCTATAACATTCATATCTGTAAAAATGCTAAAAAAT
Alignments
lowQualScore : 111111 111 2222222 11111111 111111 11
lowQualScore : 111111 1 000 1 4444444 77 33 4 55 4 55 44444444 777 4 66 4 4 3 222222 4 4 11 0 55 55 4 6 3 5 2 3 3
lowQualScore : ...... . ... . ....... .. .. . .. . .. ........ ... . .. . . . ...... . . .. . .. .. . . . . . . .
lowQualScore : 888888 0 000 4 3333333 99 22 0 55 0 55 55555555 000 0 11 0 0 6 888888 4 4 99 4 55 55 0 2 1 7 9 1 3
consensus : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
Reference ( family-322 ) : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|1 : CGTAGCTAATTT-TGTGTTCTGTCAT--GATATAACTAATTGTCTGTGATG------AGTG--TCTTTTTTGGTTGTTGTAG----ATCTCTACAC-GTGTCCAACATCATAAATGA-ATGCTTCACTACAACCATTG---CCTCATATAGAGGTTTC-GC-ATC-AAAT-T------CCAT-CATGC------AATACAGC-TAGGGA--AGGAATT--AATAATCGT--G--CATAATGCAACAC-CA-ACTAA-CACA-CGACGGGCCCTACAA-CATC
gi|10 : taattatatccagaaaacctacagacgccggaT---TGTCTGTGAT-------AGTA--TCTTTTTTGGT------------ATTCA--------------CAT--TAAATGA-A--ATTCAT--------TTAATACTTAAT-TAGCT--TTCGGC-AAC-AAATGTGGGTCGCCAT-TATGT------AATAC-AC-GAaac
gi|12 : C-ATC-AAATTTGAGTCACGAT-C-TGTGCACGAAATAC-AT-AGGGAA--AATA-TTTAGATAATCGT--G--CA-AATGGAGCACAAA-AC-AA-CACATCAATA
gi|13 : TTAAATAATCGTCTG--CA-AATGGAACAC-CA-AC-AA-CACACCGAAAGGGCCTACAC-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|14 : GTTGTTGTATTCATACACAGTG-CCAACAT--AAAATGA-A--ATTCCT--------TGA---CTTAAT-AAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-Cacac
gi|15 : AATCGT--G--CA-AGTGGAACAC-CA-AC-AA-CACACCCACACGGTCTACAA-CATCCAAGGT-AGCATTTTAAATATTGAAAAAT
gi|17 : CGACAGGGCCTACAA-CATCAAAGTC-TGCATTTTAAATATTGAAATATata
gi|18 : TTAAATAATCGT--G--CA-AATGGAACA------------------------CCTACAA-CATCCAAGTC-TGactccctta
gi|19 : AAATAATCTT--G--CA-AATGGAACACAAA-AC-AA-CACATCGAtgacactctt
gi|2 : aatatgtggagaCGTAGCTAATTTATGTGTTCTGT-AT--GATAGAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTTTATTCAACCACAGTG-CCAACAT--TAAATGA-A--ATTAAT--------TTA---CTTAAT-GGGCG--TTCGGC-ATC-AAATGTGGGTCGTCAT-CATGT------AATAC-GC-GAGGGG--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCATACAA-CATCCAAGTT-TGCATTTCAAATATCAAAACATttt
gi|20 : -AA-CACACCGATTGTGCCTATAA-CATTCATATC-TGTA---AAAATGCTAAAAAAT
gi|21 : AACGC-AACAC-AA-CACATCGACAGGGCCTACAA-CATCAAAGTCGTGC
gi|22 : GGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|23 : ACAT-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCAAAGTC-TGCaca
gi|24 : -CA-AC-AA-CACATCGACAGGGCCTACAACCATCAAAGTC-
gi|3 : CATAGCTAATTCATATGTTCTGT-ATATGATATAACT---TCTCTGTGATTATGATGAGTA--TCCTTTTTGGTTG------TTGTATTCATACAGAGTG-CAGACAT--TAAATGC-A--ATTAAT--------TTA---CTTAAT-TAGCG--TTTGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-AC-GAGGGA--AGTAAT
gi|4 : atatgtcacgcagaaaaaacccagacgccgaTTTTTTGGTTGTTGTT--TGTATTCATACACAGTG-CCAACAT--TAAATGACA--ATTCAT--------TTA---CTTGAT-TAGCA--TTCGGCAATCAAAATGTGGGTCGCCAT-CATCT------AATAC-GCAGAAGAAT-ATTAATTT-AATAACCTT--GGCCA-AAATGAACA--CA-AC-AACCACACCGA
gi|5 : tCGTAGCTAATTTATGCGTTTTGT-AT--GATATAACT---TG---------------------TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATCA-A--ATTAAT--------TTA---CTGAAT-TAGCG--TTCGGC-ATC-ATATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTttagaagtatacacattcttgaaaaatacaccctt
gi|6 : aatatatgtcacacagtaaaatctcagacgccgaCGTAGCAAATTTATGTGTTCTGC-AA--GATATAATT---TGTCTGTGAT-------AGTCCTTTTTTTTTTTTTATTGTTTTTGTATTTATACAAAGTG-CCGACTT--TAAATGT-A--ATTCAC--------TCA---CTTAAT-TAGTG--TTCCAC-ATC-AAATGTGGGTCTCCATGCAT
gi|7 : gatatatgtcacacagtaaaaactcgtacgttgaTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGAG--TTCGAC-ATC-AAATGTGGGTCACCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCAT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTT
gi|8 : T-CACGA------AAAAC-AC-GAGGGAGAAATAATAAAAAAAAAAA---G--CA-AATAGAGAAC-AA-ACCAA-CACACCCATTGGGCCTGTAA-CACTCATATC-TGCATTTTAAATACTAAAAAATt
gi|9 : ggatcagtgCGTAGCTAATCTATGTGTTCTG-----------AA-----------TGAT-------AGTA--TCTTTTTTATTGGTTGTTGTCGTATTCATACACAGTG-CCAACAT--TAAATGA-C--ATTCAT--------TTA---CTTAAT-gca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGAAAAATACACTCTTA
Unaligned ( gi|16 ): CTAATGTCACACAGTAAAAAACTCAGACGCCGACGTACATGTGATCTCTGTATGATA
Alignments
lowQualScore : 111111 111 2222222 11111111 111111 11
lowQualScore : 111111 1 000 1 4444444 77 33 4 55 4 55 44444444 777 4 66 4 4 3 222222 4 4 11 0 55 55 4 6 3 5 2 3 3
lowQualScore : ...... . ... . ....... .. .. . .. . .. ........ ... . .. . . . ...... . . .. . .. .. . . . . . . .
lowQualScore : 888888 0 000 4 3333333 99 22 0 55 0 55 55555555 000 0 11 0 0 6 888888 4 4 99 4 55 55 0 2 1 7 9 1 3
consensus : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
Reference ( family-322 ) : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|1 : CGTAGCTAATTT-TGTGTTCTGTCAT--GATATAACTAATTGTCTGTGATG------AGTG--TCTTTTTTGGTTGTTGTAG----ATCTCTACAC-GTGTCCAACATCATAAATGA-ATGCTTCACTACAACCATTG---CCTCATATAGAGGTTTC-GC-ATC-AAAT-T------CCAT-CATGC------AATACAGC-TAGGGA--AGGAATT--AATAATCGT--G--CATAATGCAACAC-CA-ACTAA-CACA-CGACGGGCCCTACAA-CATC
gi|10 : taattatatccagaaaacctacagacgccggaT---TGTCTGTGAT-------AGTA--TCTTTTTTGGT------------ATTCA--------------CAT--TAAATGA-A--ATTCAT--------TTAATACTTAAT-TAGCT--TTCGGC-AAC-AAATGTGGGTCGCCAT-TATGT------AATAC-AC-GAaac
gi|12 : C-ATC-AAATTTGAGTCACGAT-C-TGTGCACGAAATAC-AT-AGGGAA--AATA-TTTAGATAATCGT--G--CA-AATGGAGCACAAA-AC-AA-CACATCAATA
gi|13 : TTAAATAATCGTCTG--CA-AATGGAACAC-CA-AC-AA-CACACCGAAAGGGCCTACAC-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|14 : GTTGTTGTATTCATACACAGTG-CCAACAT--AAAATGA-A--ATTCCT--------TGA---CTTAAT-AAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-Cacac
gi|15 : AATCGT--G--CA-AGTGGAACAC-CA-AC-AA-CACACCCACACGGTCTACAA-CATCCAAGGT-AGCATTTTAAATATTGAAAAAT
gi|17 : CGACAGGGCCTACAA-CATCAAAGTC-TGCATTTTAAATATTGAAATATata
gi|18 : TTAAATAATCGT--G--CA-AATGGAACA------------------------CCTACAA-CATCCAAGTC-TGactccctta
gi|19 : AAATAATCTT--G--CA-AATGGAACACAAA-AC-AA-CACATCGAtgacactctt
gi|2 : aatatgtggagaCGTAGCTAATTTATGTGTTCTGT-AT--GATAGAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTTTATTCAACCACAGTG-CCAACAT--TAAATGA-A--ATTAAT--------TTA---CTTAAT-GGGCG--TTCGGC-ATC-AAATGTGGGTCGTCAT-CATGT------AATAC-GC-GAGGGG--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCATACAA-CATCCAAGTT-TGCATTTCAAATATCAAAACATttt
gi|20 : -AA-CACACCGATTGTGCCTATAA-CATTCATATC-TGTA---AAAATGCTAAAAAAT
gi|21 : AACGC-AACAC-AA-CACATCGACAGGGCCTACAA-CATCAAAGTCGTGC
gi|22 : GGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|23 : ACAT-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCAAAGTC-TGCaca
gi|24 : -CA-AC-AA-CACATCGACAGGGCCTACAACCATCAAAGTC-
gi|3 : CATAGCTAATTCATATGTTCTGT-ATATGATATAACT---TCTCTGTGATTATGATGAGTA--TCCTTTTTGGTTG------TTGTATTCATACAGAGTG-CAGACAT--TAAATGC-A--ATTAAT--------TTA---CTTAAT-TAGCG--TTTGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-AC-GAGGGA--AGTAAT
gi|4 : atatgtcacgcagaaaaaacccagacgccgaTTTTTTGGTTGTTGTT--TGTATTCATACACAGTG-CCAACAT--TAAATGACA--ATTCAT--------TTA---CTTGAT-TAGCA--TTCGGCAATCAAAATGTGGGTCGCCAT-CATCT------AATAC-GCAGAAGAAT-ATTAATTT-AATAACCTT--GGCCA-AAATGAACA--CA-AC-AACCACACCGA
gi|5 : tCGTAGCTAATTTATGCGTTTTGT-AT--GATATAACT---TG---------------------TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATCA-A--ATTAAT--------TTA---CTGAAT-TAGCG--TTCGGC-ATC-ATATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTttagaagtatacacattcttgaaaaatacaccctt
gi|6 : aatatatgtcacacagtaaaatctcagacgccgaCGTAGCAAATTTATGTGTTCTGC-AA--GATATAATT---TGTCTGTGAT-------AGTCCTTTTTTTTTTTTTATTGTTTTTGTATTTATACAAAGTG-CCGACTT--TAAATGT-A--ATTCAC--------TCA---CTTAAT-TAGTG--TTCCAC-ATC-AAATGTGGGTCTCCATGCAT
gi|7 : gatatatgtcacacagtaaaaactcgtacgttgaTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGAG--TTCGAC-ATC-AAATGTGGGTCACCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCAT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTT
gi|8 : T-CACGA------AAAAC-AC-GAGGGAGAAATAATAAAAAAAAAAA---G--CA-AATAGAGAAC-AA-ACCAA-CACACCCATTGGGCCTGTAA-CACTCATATC-TGCATTTTAAATACTAAAAAATt
gi|9 : ggatcagtgCGTAGCTAATCTATGTGTTCTG-----------AA-----------TGAT-------AGTA--TCTTTTTTATTGGTTGTTGTCGTATTCATACACAGTG-CCAACAT--TAAATGA-C--ATTCAT--------TTA---CTTAAT-gca
blockSeqs : TATAT C . T TATGATG CT GT . . C . . ATA . . A A G GCACGA . A GA CT GC . A C C C C G
blockSeqs : TAT C . T . . GT . . . . . . . . . . . . . . T . . . A . . . . .
blockSeqs : TAT C . T . . GT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : CAA T . T . . TT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . GT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . GT . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : T . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqs : . .
blockSeqCons : TAT*** *** ******* GT ** ** ******** **
originalCons : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
finalCons : CGTAGCTAATTTATGTGTTCTGTAT---GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGAAAAATACACTCTTA
Unaligned ( gi|16 ): CTAATGTCACACAGTAAAAAACTCAGACGCCGACGTACATGTGATCTCTGTATGATA
Alignments
lowQualScore : 111111 111 2222222 11111111 111111 11
lowQualScore : 111111 1 000 1 4444444 77 33 4 55 4 55 44444444 777 4 66 4 4 3 222222 4 4 11 0 55 55 4 6 3 5 2 3 3
lowQualScore : ...... . ... . ....... .. .. . .. . .. ........ ... . .. . . . ...... . . .. . .. .. . . . . . . .
lowQualScore : 888888 0 000 4 3333333 99 22 0 55 0 55 55555555 000 0 11 0 0 6 888888 4 4 99 4 55 55 0 2 1 7 9 1 3
consensus : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
Reference ( family-322 ) : CGTAGCTAATTTATGTGTTCTGT-AT--GATATAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|1 : CGTAGCTAATTT-TGTGTTCTGTCAT--GATATAACTAATTGTCTGTGATG------AGTG--TCTTTTTTGGTTGTTGTAG----ATCTCTACAC-GTGTCCAACATCATAAATGA-ATGCTTCACTACAACCATTG---CCTCATATAGAGGTTTC-GC-ATC-AAAT-T------CCAT-CATGC------AATACAGC-TAGGGA--AGGAATT--AATAATCGT--G--CATAATGCAACAC-CA-ACTAA-CACA-CGACGGGCCCTACAA-CATC
gi|10 : taattatatccagaaaacctacagacgccggaT---TGTCTGTGAT-------AGTA--TCTTTTTTGGT------------ATTCA--------------CAT--TAAATGA-A--ATTCAT--------TTAATACTTAAT-TAGCT--TTCGGC-AAC-AAATGTGGGTCGCCAT-TATGT------AATAC-AC-GAaac
gi|12 : C-ATC-AAATTTGAGTCACGAT-C-TGTGCACGAAATAC-AT-AGGGAA--AATA-TTTAGATAATCGT--G--CA-AATGGAGCACAAA-AC-AA-CACATCAATA
gi|13 : TTAAATAATCGTCTG--CA-AATGGAACAC-CA-AC-AA-CACACCGAAAGGGCCTACAC-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|14 : GTTGTTGTATTCATACACAGTG-CCAACAT--AAAATGA-A--ATTCCT--------TGA---CTTAAT-AAGCG--TTCGGC-ATC-AAATGTGGGTCGCCAT-Cacac
gi|15 : AATCGT--G--CA-AGTGGAACAC-CA-AC-AA-CACACCCACACGGTCTACAA-CATCCAAGGT-AGCATTTTAAATATTGAAAAAT
gi|17 : CGACAGGGCCTACAA-CATCAAAGTC-TGCATTTTAAATATTGAAATATata
gi|18 : TTAAATAATCGT--G--CA-AATGGAACA------------------------CCTACAA-CATCCAAGTC-TGactccctta
gi|19 : AAATAATCTT--G--CA-AATGGAACACAAA-AC-AA-CACATCGAtgacactctt
gi|2 : aatatgtggagaCGTAGCTAATTTATGTGTTCTGT-AT--GATAGAACT---TGTCTGTGAT-------AGTA--TCTTTTTTGGTTGTTGTTGTTTTATTCAACCACAGTG-CCAACAT--TAAATGA-A--ATTAAT--------TTA---CTTAAT-GGGCG--TTCGGC-ATC-AAATGTGGGTCGTCAT-CATGT------AATAC-GC-GAGGGG--AGTAATTTAAATAATCGT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCATACAA-CATCCAAGTT-TGCATTTCAAATATCAAAACATttt
gi|20 : -AA-CACACCGATTGTGCCTATAA-CATTCATATC-TGTA---AAAATGCTAAAAAAT
gi|21 : AACGC-AACAC-AA-CACATCGACAGGGCCTACAA-CATCAAAGTCGTGC
gi|22 : GGCCTACAA-CATCCAAGTC-TGCATTTTAAATATTGAAAAAT
gi|23 : ACAT-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCAAAGTC-TGCaca
gi|24 : -CA-AC-AA-CACATCGACAGGGCCTACAACCATCAAAGTC-
gi|3 : CATAGCTAATTCATATGTTCTGT-ATATGATATAACT---TCTCTGTGATTATGATGAGTA--TCCTTTTTGGTTG------TTGTATTCATACAGAGTG-CAGACAT--TAAATGC-A--ATTAAT--------TTA---CTTAAT-TAGCG--TTTGGC-ATC-AAATGTGGGTCGCCAT-CATGT------AATAC-AC-GAGGGA--AGTAAT
gi|4 : atatgtcacgcagaaaaaacccagacgccgaTTTTTTGGTTGTTGTT--TGTATTCATACACAGTG-CCAACAT--TAAATGACA--ATTCAT--------TTA---CTTGAT-TAGCA--TTCGGCAATCAAAATGTGGGTCGCCAT-CATCT------AATAC-GCAGAAGAAT-ATTAATTT-AATAACCTT--GGCCA-AAATGAACA--CA-AC-AACCACACCGA
gi|5 : tCGTAGCTAATTTATGCGTTTTGT-AT--GATATAACT---TG---------------------TCTTTTTTGGTTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATCA-A--ATTAAT--------TTA---CTGAAT-TAGCG--TTCGGC-ATC-ATATGTGGGTCGCCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTttagaagtatacacattcttgaaaaatacaccctt
gi|6 : aatatatgtcacacagtaaaatctcagacgccgaCGTAGCAAATTTATGTGTTCTGC-AA--GATATAATT---TGTCTGTGAT-------AGTCCTTTTTTTTTTTTTATTGTTTTTGTATTTATACAAAGTG-CCGACTT--TAAATGT-A--ATTCAC--------TCA---CTTAAT-TAGTG--TTCCAC-ATC-AAATGTGGGTCTCCATGCAT
gi|7 : gatatatgtcacacagtaaaaactcgtacgttgaTGTTGTTGTTGTATTCATACACAGTG-CCAACAT--TAAATGA-A--ATTCAT--------TTA---CTTAAT-TAGAG--TTCGAC-ATC-AAATGTGGGTCACCAT-CATGT------AATAC-GC-GAGGGA--AGTAATTTAAATAATCAT--G--CA-AATGGAACAC-CA-AC-AA-CACACCGACAGGGCCTACAA-CATCCAAGTC-TGCATTTT
gi|8 : T-CACGA------AAAAC-AC-GAGGGAGAAATAATAAAAAAAAAAA---G--CA-AATAGAGAAC-AA-ACCAA-CACACCCATTGGGCCTGTAA-CACTCATATC-TGCATTTTAAATACTAAAAAATt
gi|9 : ggatcagtgCGTAGCTAATCTATGTGTTCTG-----------AA-----------TGAT-------AGTA--TCTTTTTTATTGGTTGTTGTCGTATTCATACACAGTG-CCAACAT--TAAATGA-C--ATTCAT--------TTA---CTTAAT-gca
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): GTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATATTGAAAAATACACTCTTA
Unaligned ( gi|16 ): CTAATGTCACACAGTAAAAAACTCAGACGCCGACGTACATGTGATCTCTGTATGATA