lowQualScore : 111111111111111111111111111111
lowQualScore : 7777777777777777777777777777777777777 44444444444444444444444 000000000000000000000000000000 555555555555555555555555555555 3333333333333333333 5555555555 11 111 1111 11 22222222222222 2222 222222 1111 6666666666 1 1111 444444444 5555 11 11 22222 1 2222
lowQualScore : 6 6 6 5 5 1 99 6 99 5 6666666666666666666666666666666666666 1 2 33333333333333333333333 1 5 99 6 5 6 99 3 555555555555555555555555555555 0 444444444444444444444444444444 5 3333333333333333333 0 8 2222222222 11 6 44 000 6 777 8 7777 8 22 66666666666666 4 99 7 4444 555555 5555 0 6 6666666666 44 88 5 5 1 3 4444 8 6 111111111 22 4444 33 33 3 11111 3 0 0000 99
lowQualScore : . . . . . . .. . .. . ..................................... . . ....................... . . .. . . . .. . .............................. . .............................. . ................... . . .......... .. . .. ... . ... . .... . .. .............. . .. . .... ...... .... . . .......... .. .. . . . . .... . . ......... .. .... .. .. . ..... . . .... ..
lowQualScore : 7 7 7 7 7 7 22 7 22 0 1111111111111111111111111111111111111 7 2 77777777777777777777777 5 2 22 7 0 7 22 5 888888888888888888888888888888 8 888888888888888888888888888888 0 6666666666666666666 8 0 6666666666 44 7 77 222 7 888 0 0000 0 22 66666666666666 2 22 0 3333 888888 2222 2 7 9999999999 66 00 7 7 4 3 2222 0 7 444444444 00 0000 88 88 2 55555 0 0 8888 00
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TGTATTTTC-------TTCCAAGTTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCTNAA-GATATTTACCCCTG--TACCCGC-GTAATTTTTCTTTTCTACTT-CGAT--ACGC--GACANTNTTTTTTTTT-ACTGACCAGCAGTCCAAN--GAAA--TACAA-----AGTTGTCGA-AAAT-TT-TTNAATCGCTG-CCNNAG--CAAACA-AGCATGCAGGTAAA-TGC----CAGTCTT-ACATCAAC-AGATA--AG--CAGAGG--AAGAAGA--TTTGTTCATGAAAAGAA--T-ATAA------CAN---GTGACA-AAACA-TG-CA-TGAGTACATTTCTAA-GAA-C-AGAA----AGTAAACAA-CAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGATT----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( gi|3 ) : CACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TGTATTTT--------TTCCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTGAA-GATATTTACCCATG--TAACTGC-AAAATTTTTCTTTTCTACTT-GGA---ACGC--GACATTTTTTTTTTTT-ACTGACCAGCAGTCCAAA--GGGA--TACGA-----AGTTGTCGA-AAAT-TTATTCTATCGCTG-CCTCAG--CAAACA-AGCGCACAGGTAAA-TGC----CAGTTTT-ACATCAAT-AGATA--AG--CA-AGG--AAGAAAA--TTTGTTCATGAACAGAA--T-ATAA------CAA---GTGACA-AAACA-TGCCATTGGGTGCATTTCCTA-GAA-C-AGAA----AGAAAACAA-CAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---A---CA-ATGCT--------TTTC-------T---------TATC--A------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTTAA-GATATTTTTTC-----------------TTTTTTTTTTCTACTTCAAA---ACTT--GACAAGATTTTTT----ACTGACCAACAATACAAC--GAAA--TGCAG-----AGTTGTCGA-AA-T-TT-TTAAATCA--G-CGTCAGAGCAAACA-AGTATACAAGAAAA-TGC----CAATTTT-ACATCAGC-GGATATAAG--CAGAGA--AAGAAGA--TCTGTTCATGAAAAGAG--TCATAA------CAT---GTGACA-AAACA----CA---AATACATTTCCAA-GAACC-AGGA----AGTAAACAA-CAAAGTTCA-GTT----TGGAAGC
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---ACG-TGTACTT
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---A---TGAATTTT--------TTCCAAGCTGTT---------TA-C--AAATTTTTAAACATTTCAATGTTGAATTTTACT--TTTTT-CATCTGAAAGATATTTACCCATG--TAACTGCCAAAATTTTTCTTTTCTACTT-GGA---ACGC--GACATTTTTTTTTTTTTACTGACCAGCAGTCCGAAAGGGGAG-TAC-A-----AGTTGTCGAGAAATATTAAACTATCGCTGGCCTCAG--CAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATA--AAGCCA-AGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA-----CAA---GTGACA-AAACAGTGCCACTGGG-GCATTTCCTA-GAA-C-AGAA----AGAAAACAA-CAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTATTATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGCcatatgaacatgttctccaaaatctgttttgtttaacattattttttttttt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACACAAG----------A---A---TGCTTTCTTA------TTCAAAGTTGTT---------AGTC--AGATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCATCTG---------------TG--T---------AATTTTTCTTTTCTAT------------C--GA--------TTTTTT-ACTGATCAACAGTCCAGG--GAAA--TA-GAGATTGAGTTGCCGC-AAGT-T--TTCAATCACTG-CCAGAA--CAAACA-AGCagc
gi|17 : AGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCa
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---A---CGT
gi|7 : tcA-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---A---TGTTTCTA--------TTCAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCATttgcttcacagtctacattt
gi|2 : TATTT-ACAC-------------A---ACAATG-ATTTTCTTAATTATTCCAAGTTGTT---------AGTC--AGATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCTTA----TATTTACCCCAG--TACCCGT-GTAATTTTTCTTTTTCACTT-CGAT--GCAC--AAGATTTTTT-------ACTGACCAGTAGTCCACC--AAAA--TACAA-----AAT-ACCGA-AAA---------------G-TCTCA-----AACA-AGCATTCCGATAAA-TAC----CAGCNNN-NNNNNNNN-NNNNN--NN--NN-NNN--NNNNNNN--NNNNNNNNNNNNNNNNN--N-NNNN------NNN---NNNNNN-NNNNN-NNNNNNNNNNNNNNNNNNNNN-NNN-N-NNNNNNNTAGAAAGTAAACAAAGTTCA-GTTTG----GAAGCATTAAGCTGAGGGTGGACATGATC----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCGt
gi|4 : ATTT-ACAC-------------ATCAA---TGC-TTTTCTTA----TTCCAAGTTGT-----------------AAGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCCTGAGCACCTGT-GTAATTTTTCTTTTCTACTT-CAATACATGCATGACAATATTTTCT----ATTGACCAGCGGT--AAA--GCGAAATACAG-----AGTTGTC-A-AAAT-TT-TTGAATCCCTG-CCAGAG--CAAACA-AGCATGCAGATAAA-TAC----CGGCCTT-ACATCAAC-AGATA--AG--CAGAAG--AAGAATA--TTTGTTCATGAAAAAAAATC-ATAA------CAC---ATGACA-AAACA-TG------AGTACATTTCTAA-GAA-CCAGAA----AGTAAACAA----AGTTCA-GTTTG----GAAGCTCTAGGCTGAGGATGGACATGATTT----TAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|8 : TG-CCCAAG--CAAATG-AACATGCGGGTAAA-TGTTGGACATTCTT-ACATCAAA-AGATG--TG--CA-A-------AAGA--TTTATTCATGAATAGAAT-T-ATAA------CAG---GT-ATAGAAACA----CA---GGCAGATTT-TTATGAA-C-AG----------TAC-A-CAAAGTTCA---TTG--TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|14 : A--TTTGTTCATGAAAAAAA--TCATAAAAGAGTCAACATGTGACA-AAACA-------TGAGTACATTTCTAA-GAA-C-
gi|16 : gtTGAGTACATCTCTAA-GGA-CCAGAA----AGTAAACAA-CAAAGTTCca
gi|12 : ccaaacaTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGC
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 44444444444444444444444444444444444444444444 222222222222222 444444444444444444444444444444 55555555555555555555 111 11111 11111 1111 1111 1111 1111 222222222 333333333 1 11111 3333 3333 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 66666666666666666666666666666666666666666666 4 0 888888888888888 2 77 3 77 5 5 77 888888888888888888888888888888 11111111111111111111 111 33 55555 99 6 44444 3 5 66 5 2 6 4444 6 88 1111 4444 1 99 1 3 9999 5 222222222 1 5 999999999 0 5 0 44444 2 1 5 77 6666 4444 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ............................................ . . ............... . .. . .. . . .. .............................. .................... ... .. ..... .. . ..... . . .. . . . .... . .. .... .... . .. . . .... . ......... . . ......... . . . ..... . . . .. .... .... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 00000000000000000000000000000000000000000000 3 9 666666666666666 3 99 0 99 7 7 99 888888888888888888888888888888 22222222222222222222 777 55 88888 22 7 33333 7 7 00 7 2 7 2222 7 00 0000 3333 3 22 3 0 6666 7 999999999 0 7 000000000 2 0 0 33333 1 4 7 77 3333 0000 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TG-AT--TTTC---TT-------CCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT-AA-GATATTTACCC-TG--TA-CTGC-GTAATTTTTCTTTTCTACTTCGA-AC--GC--GACA--T-TTTTTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-TG-CA-TGGGTACATTTCCAAGAA-C-AGAA-----AGNAAACAA-CAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGATT--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TGTAT--TTTC---TT-------CCAAGTTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCTNAA-GATATTTACCCCTG--TACCCGC-GTAATTTTTCTTTTCTACTTCGATAC--GC--GACA-NTNTTTTTTTTTACTGACCAGCAGTCC---AANGAAATACA----AAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNNAGCAAACA-AGCATGCAGGT-AAATGC----CAG-TCTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAAAAGAA--T-AT-AA---------CANGTGACA-AAACA-TG-CA-TGAGTACATTTCTAAGAA-C-AGAA-----AGTAAACAA-CAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGATT----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---A---TGAAT--TTT----TT-------CCAAGCTGTT---------TA-C--AAATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTACCCATG--TAACTGCCAAAATTTTTCTTTTCTACTTGGA-AC--GC--GACATTTTTTTTTTTTTACTGACCAGCAGTCCGAAAGGGGAGTAC-----AAGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATAA--AGCCAAGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA---------CAAGTGACA-AAACAGTGCCACTGGG-GCATTTCCTAGAA-C-AGAA-----AGAAAACAA-CAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTATTATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---A---CG--T--TTGC---TT-------Cagc
gi|12 : tcT----TTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : ATTTGTTCATGAAAAAAA--TCAT-AAAAGAGTCAACATGTGACA-AAACA-TG------AGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gt-CA-TGAGTACATCTCTAAGGA-CCAGAA-----AGTAAACAA-CAAAGTTCca
gi|17 : ccaaaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACAC-------------A---ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTT---------AGTC--AGATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCTT----ATATTTACCCCAG--TACCCGT-GTAATTTTTCTTTTTCACTTCGATGC--AC--AAGA-------TTTTTTACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGAT-AAATAC----CAG-CNNNNNNNNNN-NNNNN-N--NNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--N-NN-NN---------NNNNNNNNN-NNNNN-NN-NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNTAGAAAGTAAACAAAGTTCA-GTT----TGGAAGCATTAAGCTGAGGGTGGACATGATC----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TGTAT--TTT----TT-------CCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTGAA-GATATTTACCCATG--TAACTGC-AAAATTTTTCTTTTCTACTTGGA-AC--GC--GACA-TTTTTTTTTTTTACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCT---ATCGCT-GCCTCAGCAAACA-AGCGCACAGGT-AAATGC----CAG-TTTTACATCAA-TAGAT-A--AGC--A-AGGAAG--AAAATTTGTTCATGAACAGAA--T-AT-AA---------CAAGTGACA-AAACA-TGCCATTGGGTGCATTTCCTAGAA-C-AGAA-----AGAAAACAA-CAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACAC-------------ATCAA---TGC-T--TTTC---TTATT----CCAAGTTGT-----------------AAGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCCTGAGCACCTGT-GTAATTTTTCTTTTCTACTTCAATACATGCATGACA-ATA---TTTTCTATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGA---ATCCCT-GCCAGAGCAAACA-AGCATGCAGAT-AAATAC----CGG-CCTTACATCAA-CAGAT-A--AGC--AGAAGAAG--AATATTTGTTCATGAAAAAAAATC-AT-AA---------CACATGACA-AAA------CA-TGAGTACATTTCTAAGAACC-AGAA-----AGTA---AA-CAAAGTTCA-GTT----TGGAAGCTCTAGGCTGAGGATGGACATGATT----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---A---CA-AT--GCTT---TT-------C--------T---------TATC--A------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTTAA-GATATTTTTTC-----------------TTTTTTTTTTCTACTTCAAAAC--TT--GACA-AGATTTTTT---ACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAA---ATCAGC-GTCAGAGCAAACA-AGTATACAAGA-AAATGC----CAA-TTTTACATCAG-CGGAT-ATAAGC--AGAGAAAG--AAGATCTGTTCATGAAAAGAG--TCAT-AA---------CATGTGACA-AAACA----CA---AATACATTTCCAAGAA-CCAGGA-----AGTAAACAA-CAAAGTTCA-GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACAC-------------A---A----GAATGCTTTCTTATT-------CAAAGTTGTT---------AGTC--AGATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCATCT-------------------------GT-GTAATTTTTCTTTTCTA--TCGA--------------------TTTTTTACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCA---ATCACT-GCCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---A---TGT-T--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : T-GCCCAAGCAAATG-AACATGCGGGT-AAATGTTGGACAT-TCTTACATCAA-AAGAT-G--TGC--------AA--AAGATTTATTCATGAATAGAAT-T-AT-AA---------CAGGT-ATAGAAACA----CA---GGCAGATTTTTATGAA-C----------AGT--AC-A-CAAAGTTCA---TTG--TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---ACG-TGTAC--TT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222 222222222222222 7777777777777777777777777777777777 55555555555555555555 111 11111 11111 1111 1111 1111 222222222 333333333 1 11111 3333 4444444 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 77777777777777777777777777777777777777777777 4 0 888888888888888 2 77 3 77 5 5 77 3333333333333333333333333333333333 99999999999999999999 7 111 2 77777 99 6 44444 3 5 66 5 22 6 4444 6 88 1111 99 2 44 99 1 1 9999 5 222222222 1 5 999999999 0 5 0 1 44444 3 1 5 77 6666 0000000 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ............................................ . . ............... . .. . .. . . .. .................................. .................... . ... . ..... .. . ..... . . .. . .. . .... . .. .... .. . .. .. . . .... . ......... . . ......... . . . . ..... . . . .. .... ....... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 99999999999999999999999999999999999999999999 3 4 666666666666666 3 99 0 99 7 7 99 3333333333333333333333333333333333 00000000000000000000 3 777 5 88888 22 7 33333 7 7 00 7 88 7 2222 7 00 0000 22 8 22 22 3 0 6666 7 999999999 0 7 000000000 2 0 0 6 33333 0 7 7 77 3333 8888888 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---CG-AT--TTTC---TT-------CCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA----T-TTTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-TG-CA-TGGGTACATTTCCAAGAA-C-AGAA-----AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TG-AT--TTTC---TT-------CCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA---TTTTTTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-TG-CA-TGGGTACATTTCCAAGAA-C-AGAA-----AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---A---TG-AA--TTTT---TT-------CCAAGCTGTT---------TA-C--AAATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTAC-CCAT-G--T-AAC-TGCCAAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTTTTTTTTTTACTGACCAGCAGTCCGAAAGGGGAGTACA-----AGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATAA--AGCCAAGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA---------CAAGTGACA-AAACAGTGCCACTGGG-GCATTTCCTAGAA-C-AGAA-----AGAAAAC-AACAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTAT--TATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---A---CG--T--TTGC---TT-------Cagc
gi|12 : tcTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : tATTTGTTCATGAAAAAAA--TCAT-AAAAGAGTCAACATGTGACA-AAACA-TG------AGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gt-CA-TGAGTACATCTCTAAGGA-CCAGAA-----AGTAAAC-AACAAAGTTCca
gi|17 : ccaaaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACAC-------------A---ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTT---------AGTC--AGATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCT----TATATTTAC-CC-CAG--T-ACC-CGT-GTAATTTTTCTTTTTCACTTCGAT--G-CAC--AAGA-------TTTTTTACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGAT-AAATAC----CAG-CNNNNNNNNNN-NNNNN-N--NNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--N-NN-NN---------NNNNNNNNN-NNNNN-NN-NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNTAGAAAGTAAACAAAGTTCA-GTT----TGGAAGCATTAAGCTGAGGGTGGACATGAT--C----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---A---TGTAT--TTT----TT-------CCAAGCTGTT---------TATC--AAATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTG-AAGATATTTAC-CCAT-G--TAA-C-TGC-AAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATT-TTTTTTTTTTACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCT---ATCGCT-GCCTCAGCAAACA-AGCGCACAGGT-AAATGC----CAG-TTTTACATCAA-TAGAT-A--AGC--A-AGGAAG--AAAATTTGTTCATGAACAGAA--T-AT-AA---------CAAGTGACA-AAACA-TGCCATTGGGTGCATTTCCTAGAA-C-AGAA-----AGAAAAC-AACAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGAT--TTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACAC-------------ATCAA---TG-CT--TTTC---TTATT----CCAAGTTGT-----------------AAGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCC-T-GAGC-A-CCTGT-GTAATTTTTCTTTTCTACTTCAATACA-TGCATGACA---ATATTTTCT-ATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGA---ATCCCT-GCCAGAGCAAACA-AGCATGCAGAT-AAATAC----CGG-CCTTACATCAA-CAGAT-A--AGC--AGAAGAAG--AATATTTGTTCATGAAAAAAAATC-AT-AA---------CACATGACA-AAA------CA-TGAGTACATTTCTAAGAACC-AGAA-----AGTA----AACAAAGTTCA-GTT----TGGAAGCTCTAGGCTGAGGATGGACATGAT--T----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---A---CA-AT--GCTT---TT-------C--------T---------TATC--A------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTT-AAGATATTTTT-TC-T-------------------TTTTTTTTTCTACTTCAA---AACTT--GACA---AGATTTTTT-ACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAA---ATCAGC-GTCAGAGCAAACA-AGTATACAAGA-AAATGC----CAA-TTTTACATCAG-CGGAT-ATAAGC--AGAGAAAG--AAGATCTGTTCATGAAAAGAG--TCAT-AA---------CATGTGACA-AAACA----CA---AATACATTTCCAAGAA-CCAGGA-----AGTAAAC-AACAAAGTTCA-GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACAC-------------A---A---GA-ATGCTTTCTTATT-------CAAAGTTGTT---------AGTC--AGATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCAT----------------------------C-TGT-GTAATTTTTCTTTTCTA--TCGA---------------------TTTTTTACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCA---ATCACT-GCCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---A---TG-TT--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : T-GCCCAAGCAAATG-AACATGCGGGT-AAATGTTGGACAT-TCTTACATCAA-AAGAT-G--TGC--AAA--------AGATTTATTCATGAATAGAAT-T-AT-AA---------CAGGT-ATAGAAACA----CA---GGCAGATTTTTATGAA-C-AG-----------TAC--ACAAAGTTCA---TTG--TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---A---CG-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222 22222222222222222 7777777777777777777777777777777777 7777777777777777777777 111 11111 11111 1111 1111 1111 1111 222222222 444444 11 1 11111 3333 4444444 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 99999999999999999999999999999999999999999999 4 0 77777777777777777 77 3 77 5 5 77 3333333333333333333333333333333333 4444444444444444444444 111 2 77777 99 6 44444 3 5 66 5 22 6 4444 6 88 1111 4444 1 99 1 1 9999 5 222222222 1 5 000000 44 0 5 0 1 44444 3 1 5 77 6666 0000000 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ............................................ . . ................. .. . .. . . .. .................................. ...................... ... . ..... .. . ..... . . .. . .. . .... . .. .... .... . .. . . .... . ......... . . ...... .. . . . . ..... . . . .. .... ....... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 22222222222222222222222222222222222222222222 3 4 44444444444444444 99 0 99 7 7 99 3333333333333333333333333333333333 7777777777777777777777 777 5 88888 22 7 33333 7 7 00 7 88 7 2222 7 00 0000 3333 3 22 3 0 6666 7 999999999 0 7 000000 55 2 0 0 6 33333 0 7 7 77 3333 8888888 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T-TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA--G-CA-TGGGTACATTTCCAAGAA-C-AGAA-----AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA-----TT-TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-TG-CA-TGGGTACATTTCCAAGAA-C-AGAA-----AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---AT---G-AA--TTTT---TT-------CCAAGCTGTT---------TA-CAA--ATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTAC-CCAT-G--T-AAC-TGCCAAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTTTT-TTTTTTACTGACCAGCAGTCCGAAAGGGGAGTACA-----AGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATAA--AGCCAAGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA---------CAAGTGACA-AAACAGTGCCACTGGG-GCATTTCCTAGAA-C-AGAA-----AGAAAAC-AACAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTAT--TATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---AC---G--T--TTGC---TT-------Cagc
gi|12 : tcTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : tATTTGTTCATGAAAAAAA--TCAT-AAAAGAGTCAACATGTGACA-AAA------CA-TGAGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gt-CA-TGAGTACATCTCTAAGGA-CCAGAA-----AGTAAAC-AACAAAGTTCca
gi|17 : ccaaaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACAC-------------A---ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTT---------AGTCAG--ATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCT----TATATTTAC-CC-CAG--T-ACC-CGT-GTAATTTTTCTTTTTCACTTCGAT--G-CAC--AAGA--------TTTTTTACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGAT-AAATAC----CAG-CNNNNNNNNNN-NNNNN-N--NNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--N-NN-NN---------NNNNNNNNN-NNNNN-NN-NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNTAGAAAGTAAACAAAGTTCA-GTT----TGGAAGCATTAAGCTGAGGGTGGACATGAT--C----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AT---GTAT--TTT----TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTG-AAGATATTTAC-CCAT-G--TAA-C-TGC-AAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTT-TT-TTTTTTACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCT---ATCGCT-GCCTCAGCAAACA-AGCGCACAGGT-AAATGC----CAG-TTTTACATCAA-TAGAT-A--AGC--A-AGGAAG--AAAATTTGTTCATGAACAGAA--T-AT-AA---------CAAGTGACA-AAACA-TGCCATTGGGTGCATTTCCTAGAA-C-AGAA-----AGAAAAC-AACAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGAT--TTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACAC-------------ATCAAT---G-CT--TTTC---TTATT----CCAAGTTGT---------------A--AGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCC-T-GAGC-A-CCTGT-GTAATTTTTCTTTTCTACTTCAATACA-TGCATGACA-----ATATTTTCTATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGA---ATCCCT-GCCAGAGCAAACA-AGCATGCAGAT-AAATAC----CGG-CCTTACATCAA-CAGAT-A--AGC--AGAAGAAG--AATATTTGTTCATGAAAAAAAATC-AT-AA---------CACATGACA-AAA------CA-TGAGTACATTTCTAAGAACC-AGAA-----AGTA----AACAAAGTTCA-GTT----TGGAAGCTCTAGGCTGAGGATGGACATGAT--T----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---AC---A-AT--GCTT---TT-------C--------T---------TATCA--------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTT-AAGATATTTTT-TC-T-------------------TTTTTTTTTCTACTTCAA---AACTT--GACA-----AGATTTTTTACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAA---ATCAGC-GTCAGAGCAAACA-AGTATACAAGA-AAATGC----CAA-TTTTACATCAG-CGGAT-ATAAGC--AGAGAAAG--AAGATCTGTTCATGAAAAGAG--TCAT-AA---------CATGTGACA-AAACA----CA---AATACATTTCCAAGAA-CCAGGA-----AGTAAAC-AACAAAGTTCA-GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACAC-------------A---AG---A-ATGCTTTCTTATT-------CAAAGTTGTT---------AGTCAG--ATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCAT----------------------------C-TGT-GTAATTTTTCTTTTCTA--TCGA----------------------TTTTTTACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCA---ATCACT-GCCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---AT---G-TT--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : T-GCCCAAGCAAATG-AACATGCGGGT-AAATGTTGGACAT-TCTTACATCAA-AAGAT-G--TGC--------AA--AAGATTTATTCATGAATAGAAT-T-AT-AA---------CAGGT-ATAGAAACA----CA---GGCAGATTTTTATGAA-C-AG-----------TAC--ACAAAGTTCA---TTG--TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---AC---G-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222 22222222222222222 7777777777777777777777777777777777 88888888888888888888888 111 11111 11111 1111 1111 1111 222222222 333333333 1 111111 3333 4444444 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 99999999999999999999999999999999999999999999 4 0 77777777777777777 77 3 77 5 5 77 3333333333333333333333333333333333 11111111111111111111111 111 2 77777 99 6 44444 3 5 66 5 22 6 4444 6 88 1111 99 2 44 99 1 1 9999 5 222222222 1 5 888888888 0 0 5 1 666666 3 1 5 77 6666 0000000 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ............................................ . . ................. .. . .. . . .. .................................. ....................... ... . ..... .. . ..... . . .. . .. . .... . .. .... .. . .. .. . . .... . ......... . . ......... . . . . ...... . . . .. .... ....... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 22222222222222222222222222222222222222222222 3 4 44444444444444444 99 0 99 7 7 99 3333333333333333333333333333333333 55555555555555555555555 777 5 88888 22 7 33333 7 7 00 7 88 7 2222 7 00 0000 22 8 22 22 3 0 6666 7 999999999 0 7 222222222 2 0 0 6 444444 0 7 7 77 3333 8888888 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T--TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-G---CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T--TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-G---CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---AT---G-AA--TTTT---TT-------CCAAGCTGTT---------TA-CAA--ATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTAC-CCAT-G--T-AAC-TGCCAAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTTTT--TTTTTTACTGACCAGCAGTCCGAAAGGGGAGTACA-----AGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATAA--AGCCAAGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA---------CAAGTGACA-AAACA-GTGCCACTGGG-GCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTAT--TATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---AC---G--T--TTGC---TT-------Cagc
gi|12 : tcTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : tATTTGTTCATGAAAAAAA--TCAT-AAAAGAGTCAACATGTGACA-AAACA--------TGAGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gtA-A---CA-TGAGTACATCTCTAAGGA-CCAGAA------AGTAAAC-AACAAAGTTCca
gi|17 : ccaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACAC-------------A---ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTT---------AGTCAG--ATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCT----TATATTTAC-CC-CAG--T-ACC-CGT-GTAATTTTTCTTTTTCACTTCGAT--G-CAC--AAGA---------TTTTTTACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGAT-AAATAC----CAG-CNNNNNNNNNN-NNNNN-N--NNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--N-NN-NN---------NNNNNNNNN-NNNNN-N---NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNNTAGAAAGTAAACAAAGTTCA-GTT----TGGAAGCATTAAGCTGAGGGTGGACATGAT--C----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AT---GTAT--TTT----TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTG-AAGATATTTAC-CCAT-G--TAA-C-TGC-AAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTT-T--TTTTTTACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCT---ATCGCT-GCCTCAGCAAACA-AGCGCACAGGT-AAATGC----CAG-TTTTACATCAA-TAGAT-A--AGC--A-AGGAAG--AAAATTTGTTCATGAACAGAA--T-AT-AA---------CAAGTGACA-AAACATGC--CATTGGGTGCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGAT--TTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACAC-------------ATCAAT---G-CT--TTTC---TTATT----CCAAGTTGT---------------A--AGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCC-T-GAGC-A-CCTGT-GTAATTTTTCTTTTCTACTTCAATACA-TGCATGACAA-----TA-TTTTCTATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGA---ATCCCT-GCCAGAGCAAACA-AGCATGCAGAT-AAATAC----CGG-CCTTACATCAA-CAGAT-A--AGC--AGAAGAAG--AATATTTGTTCATGAAAAAAAATC-AT-AA---------CACATGACA-AAA-------CA-TGAGTACATTTCTAAGAACC-AGAA------AGTA----AACAAAGTTCA-GTT----TGGAAGCTCTAGGCTGAGGATGGACATGAT--T----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---AC---A-AT--GCTT---TT-------C--------T---------TATCA--------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTT-AAGATATTTTT-TC-T-------------------TTTTTTTTTCTACTTCAA---AACTT--GACA------AGATTTTTTACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAA---ATCAGC-GTCAGAGCAAACA-AGTATACAAGA-AAATGC----CAA-TTTTACATCAG-CGGAT-ATAAGC--AGAGAAAG--AAGATCTGTTCATGAAAAGAG--TCAT-AA---------CATGTGACA-AAACA-----CA---AATACATTTCCAAGAACC-AGGA------AGTAAAC-AACAAAGTTCA-GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACAC-------------A---AG---A-ATGCTTTCTTATT-------CAAAGTTGTT---------AGTCAG--ATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCAT----------------------------C-TGT-GTAATTTTTCTTTTCTA--TCGA-----------------------TTTTTTACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCA---ATCACT-GCCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---AT---G-TT--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : T-GCCCAAGCAAATG-AACATGCGGGT-AAATGTTGGACAT-TCTTACATCAA-AAGAT-G--TGC--AAA--------AGATTTATTCATGAATAGAAT-T-AT-AA---------CAGGT-ATAGAAACA-----CA---GGCAGATTTTTATGAA-C-AG------------TAC--ACAAAGTTCA---TTG--TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---AC---G-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 22222222222222222222222222222222222222222222 22222222222222222 7777777777777777777777777777777777 88888888888888888888888 111 11111 11111 1111 1111 1111 222222222 333333333 1 111111 3333 4444444 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 99999999999999999999999999999999999999999999 4 0 77777777777777777 77 3 77 5 5 77 3333333333333333333333333333333333 11111111111111111111111 111 2 77777 99 6 44444 3 5 66 5 22 6 4444 6 88 1111 99 2 44 99 1 1 9999 5 222222222 1 5 888888888 0 0 5 1 666666 3 1 5 77 6666 0000000 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ............................................ . . ................. .. . .. . . .. .................................. ....................... ... . ..... .. . ..... . . .. . .. . .... . .. .... .. . .. .. . . .... . ......... . . ......... . . . . ...... . . . .. .... ....... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 22222222222222222222222222222222222222222222 3 4 44444444444444444 99 0 99 7 7 99 3333333333333333333333333333333333 55555555555555555555555 777 5 88888 22 7 33333 7 7 00 7 88 7 2222 7 00 0000 22 8 22 22 3 0 6666 7 999999999 0 7 222222222 2 0 0 6 444444 0 7 7 77 3333 8888888 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T--TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-G---CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T--TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-G---CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACAC-------------A---AT---G-AA--TTTT---TT-------CCAAGCTGTT---------TA-CAA--ATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTAC-CCAT-G--T-AAC-TGCCAAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTTTT--TTTTTTACTGACCAGCAGTCCGAAAGGGGAGTACA-----AGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATAA--AGCCAAGGGAAAGAAAAAATTTGTTCATGAACAGAA--T-ATAAA---------CAAGTGACA-AAACA-GTGCCACTGGG-GCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCACATCTGCATGGAAGCATTAGGCTGAAAGTGGACATGATTAT--TATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACAC-------------A---AC---G--T--TTGC---TT-------Cagc
gi|12 : tcTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : tATTTGTTCATGAAAAAAA--TCAT-AAAAGAGTCAACATGTGACA-AAACA--------TGAGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gtA-A---CA-TGAGTACATCTCTAAGGA-CCAGAA------AGTAAAC-AACAAAGTTCca
gi|17 : ccaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACAC-------------A---ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTT---------AGTCAG--ATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCT----TATATTTAC-CC-CAG--T-ACC-CGT-GTAATTTTTCTTTTTCACTTCGAT--G-CAC--AAGA---------TTTTTTACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGAT-AAATAC----CAG-CNNNNNNNNNN-NNNNN-N--NNN--NNNNNNNN--NNNNNNNNNNNNNNNNNNNNN--N-NN-NN---------NNNNNNNNN-NNNNN-N---NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNNTAGAAAGTAAACAAAGTTCA-GTT----TGGAAGCATTAAGCTGAGGGTGGACATGAT--C----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AT---GTAT--TTT----TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTG-AAGATATTTAC-CCAT-G--TAA-C-TGC-AAAATTTTTCTTTTCTACTTGGA---A-CGC--GACATTTTT-T--TTTTTTACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCT---ATCGCT-GCCTCAGCAAACA-AGCGCACAGGT-AAATGC----CAG-TTTTACATCAA-TAGAT-A--AGC--A-AGGAAG--AAAATTTGTTCATGAACAGAA--T-AT-AA---------CAAGTGACA-AAACATGC--CATTGGGTGCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCA-GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGAT--TTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACAC-------------ATCAAT---G-CT--TTTC---TTATT----CCAAGTTGT---------------A--AGTC--AGA--T--CGAT-T-AAA----ACT--TTTTCTCATCT---------TTACTCC-T-GAGC-A-CCTGT-GTAATTTTTCTTTTCTACTTCAATACA-TGCATGACAA-----TA-TTTTCTATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGA---ATCCCT-GCCAGAGCAAACA-AGCATGCAGAT-AAATAC----CGG-CCTTACATCAA-CAGAT-A--AGC--AGAAGAAG--AATATTTGTTCATGAAAAAAAATC-AT-AA---------CACATGACA-AAA-------CA-TGAGTACATTTCTAAGAACC-AGAA------AGTA----AACAAAGTTCA-GTT----TGGAAGCTCTAGGCTGAGGATGGACATGAT--T----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACAC-------------A---AC---A-AT--GCTT---TT-------C--------T---------TATCA--------------T--CAATGC-GAGTCT-ACT--TTTTCTCATCTT-AAGATATTTTT-TC-T-------------------TTTTTTTTTCTACTTCAA---AACTT--GACA------AGATTTTTTACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAA---ATCAGC-GTCAGAGCAAACA-AGTATACAAGA-AAATGC----CAA-TTTTACATCAG-CGGAT-ATAAGC--AGAGAAAG--AAGATCTGTTCATGAAAAGAG--TCAT-AA---------CATGTGACA-AAACA-----CA---AATACATTTCCAAGAACC-AGGA------AGTAAAC-AACAAAGTTCA-GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACAC-------------A---AG---A-ATGCTTTCTTATT-------CAAAGTTGTT---------AGTCAG--ATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCAT----------------------------C-TGT-GTAATTTTTCTTTTCTA--TCGA-----------------------TTTTTTACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCA---ATCACT-GCCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTT---AT---G-TT--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : T-GCCCAAGCAAATG-AACATGCGGGT-AAATGTTGGACAT-TCTTACATCAA-AAGAT-G--TGC--AAA--------AGATTTATTCATGAATAGAAT-T-AT-AA---------CAGGT-ATAGAAACA-----CA---GGCAGATTTTTATGAA-C-AG------------TAC--ACAAAGTTCA---TTG--TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACAC-------------A---AC---G-
blockSeqs : . . . . . . G AT . TTTTCTTGTTTCTTATGTTTCTATT C AAACCTTGCTATTGAGA . T . . . TC GAAGATATTTACCCATGTAACTGCAA TACATGCATGACAATA . C GATTG AG A CT G . TC . TT . TGGA . N ATA . N NN . N A ATC . AAGAGTCAA T G TGCCATT C C A NNNNNT T A A G TGCA TTATA . . TAGT . ATG G
blockSeqs : . . . . . . . . . AACAATGATTTTCTTAATTATT C AGTCAG . C . . . . TATATTTACCCCAGTACCCGTGT ACGCGACATTTTTT . A A AT . GA C . AG . CA . . . T N . G GG . A N TC . . N . ACAT C . N . A A . G TG C . . . . ACG G
blockSeqs : . . . . . . . . . ATCAATGCTTTTCTTATT C TATCAA . C . . . . TTACTCCTGAGCACCTGTGT AACTTGACAAGA . C A AT . AA A . AG . TG . . . C A . G AG . T C TC . . A . NNNN . . A . A A . G . T . . . . CG G
blockSeqs : . . . . . . . . . AAGAATGCTTTCTTATT A AGTCAG . C . . . . TAAGATATTTTTTCT TGCACAAGA . C G T . CA A . AG . TA . . . C A . A GA . G A TT . . C . CAT . . A . T A . G . . . . . C T
blockSeqs : . . . . . . . . . AATGTATTTTTT A TATCA . . . . . . CTGTGT . . G G G . . . . CA . TG . . . A G . . . . G A N . . T . CA . . G . T T . . .
blockSeqs : . . . . . . . . . AACAATGCTTTT . A . . . . . . . . . T T . . G . CA . . . . . . .
blockSeqs : . . . AACGTTTGCTT T . .
blockSeqs : .
blockSeqCons : ** NGTCGA*********** ** ** TAAGATATTTCCCGGCACTGCGT*********** TACACGANA************** *** G**** NA*** C* A*** ** ** TC** CAT****** G* **** ** **
originalCons : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTT---------TATCAA--ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCT--AAGATATTTAC-CC-T-G--T-A-C-TGC-GTAATTTTTCTTTTCTACTTCGA---A-CGC--GACA------T--TTTTTTACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAA-CAGAT-A--AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAA--T-AT-AA---------CANGTGACA-AAACA-G---CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-GTTTG--TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
finalCons : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACAC-------------A---AC---G-AT--TTTC---TT-------CCAAGCTGTTNGTCGA-----------ATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCTTAAGATATTTCCCGGCACTGCGT-----------AATTTTTCTTTTCTACTTCGATACACGANA--------------TTTTTTACTGACCAGCAGTCC---AGCGAAATACAG----AGTTGTCGAAAATTT-TTNA---ATCGCT-GCCNGAGCAAACA-AGCACGCAGGT-AAATGC----CAG-TTTTACATCAAC-AGATA---AGC--AGAGGAAG--AAGATTTGTTCATGAANAGAATC--AT-AA---------CANGTGACA-AAACACAT------GGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCAG-TT----TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC
Alignments
lowQualScore : 3333333333333333333333333333333333333333 44444444444444444444444 7777777777777777777777777 111 4444444444444444444444444 2222222 111 11111 111 1111 1111 222222222 1111 11 1 111111 222222222222 4444444 11 11 1111
lowQualScore : 5 5 5 5 5 0 77 5 77 4 5555555555555555555555555555555555555555 4 0 66666666666666666666666 1 77 5 5 77 7777777777777777777777777 444 5555555555555555555555555 1111111 111 2 77777 99 6 3 111 3 5 66 5 22 6 4444 6 88 2222 99 2 44 1 77 5 1 8 222222222 5 1 5 6 9999 44 0 0 5 1 666666 3 1 5 000000000000 0000000 11 11 0 7777 0 8 888 5
lowQualScore : . . . . . . .. . .. . ........................................ . . ....................... . .. . . .. ......................... ... ......................... ....... ... . ..... .. . . ... . . .. . .. . .... . .. .... .. . .. . .. . . . ......... . . . . .... .. . . . . ...... . . . ............ ....... .. .. . .... . . ... .
lowQualScore : 7 7 7 0 0 1 99 7 99 4 3333333333333333333333333333333333333333 3 4 77777777777777777777777 3 99 7 7 99 0000000000000000000000000 000 5555555555555555555555555 7777777 777 5 88888 22 7 3 777 7 7 00 7 88 7 2222 7 00 8888 22 8 22 3 99 7 0 1 999999999 7 0 7 4 4444 55 2 0 0 6 444444 0 7 7 333333333333 8888888 00 00 8 0000 6 0 888 0
consensus : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACACA-------------AC---G-AT--TTTC---TT-------CCAAGCTGTTAGTC-----------AAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCTTAA-GATATTTA-CCC--G--A-C-TGC-GTAATTTTTCTTTTCTACTTCGA-AC---GCG-------ANA------TTTTTT-------ACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNAA---TCGCTG-CCNGAGCAAACA-AGCACGCAGGTAAA-TGC----CAGTTTT-ACATCAAC-AGATA--A-GC--AGAGGAAGAAGA--TTTGTTCATG-AANAGAATCAT---------AA-CANGTGACA-AAACA----CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-----GTN----TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
Reference ( family-3209 ) : NACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACACA-------------AC---G-AT--TTTC---TT-------CCAAGCTGTTNGTC-----------GAATTT--AAACAT--CAATGT-GAATCT-ACT--TTTTCTCATCTTAA-GATATTT--CCC--GGCA-C-TGC-GTAATTTTTCTTTTCTACTTCGATAC---ACG-------ANA------TTTTTT-------ACTGACCAGCAGTCC---AGCGAAATACA----GAGTTGTCGAAAATTT-TTNAA---TCGCTG-CCNGAGCAAACA-AGCACGCAGGTAAA-TGC----CAGTTTT-ACATCAAC-AGATA--A-GC--AGAGGAAGAAGA--TTTGTTCATG-AANAGAATCAT---------AA-CANGTGACA-AAACA----CA-TGGGTACATTTCCAAGAA-C-AGAA------AGNAAAC-AACAAAGTTCA-----GTT----TGGAAGCATTAGGCTGAGGGTGGACATGAT--T--TATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCG
gi|1 : CCTATCATCACATACAGGACAATGCAGAGTAATTGACAGAGTTCACACAG-GCTCTTGATTTACAGACATGTCTT-AGTG--ATATTTTACACA-------------AT---G-AA--TTTT---TT-------CCAAGCTGTTTA-C-----------AAATTTTTAAACATTTCAATGTTGAATTTTACT--TTTT-TCATCTGAAAGATATTTA-CCCATGTAA-C-TGCCAAAATTTTTCTTTTCTACTTGGA-AC---GCG-------ACA------TTTTTTTTTTTTTACTGACCAGCAGTCCGAAAGGGGAGTACA-----AGTTGTCGAGAAATA-TTAAACTATCGCTGGCCTCAGCAAACAGAGCGCACAGGTAAAATGC----CAGTTTTTACATCAATTAGATA--AAGCCAAGGGAAAGAAAAAATTTGTTCATG-AACAGAAT-AT---------AAACAAGTGACA-AAACAGTGCCACTGGG-GCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCACATCTGCA----TGGAAGCATTAGGCTGAAAGTGGACATGATTAT--TATTAATTCCTTTTCTCAACAGAATAAAATTCAGC----GTACAAAGGATAGACTGTGTTGCCAACGTGATTCGCAC-TCAGC
gi|10 : TCATATACAG-GCA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATATCTT-GGTGATATATTT-ACACA-------------AC---G--T--TTGC---TT-------Cagc
gi|12 : tcTTAATTCC--TTCTCAACAGAATAAA--TCAGCTAGTGTACAAAGGATAGA-TGTGTAGCCATGGTGATTCGCACGCCAGCacagtctacattt
gi|14 : tA--TTTGTTCATG-AAAAAAATCATAAAAGAGTCAA-CATGTGACA-AA--A----CA-TGAGTACATTTCTAAGAA-C-attatctcctacaggaga
gi|16 : gtA----CA-TGAGTACATCTCTAAGGA-CCAGAA------AGTAAAC-AACAAAGTTCca
gi|17 : ccaaAGTATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTC
gi|2 : TATTT-ACACA-------------ACAATG-AT--TTTC---TTAATTATTCCAAGTTGTTAGTC-----------AGATTT--AAATAT--CAATGT-GAATCT-ACT--TTTTCTCATCTT----ATATTTACCCC--AGTACC-CGT-GTAATTTTTCTTTTTCACTTCGATGC---ACA-------AGA------TTTTTT-------ACTGACCAGTAGTCC---ACCAAAATACA----AAA-TACCGAAAAGTC-T--------------------CAAACA-AGCATTCCGATAAA-TAC----CAGCNNN-NNNNNNNN-NNNNN--N-NN--NNNNNNNNNNNN--NNNNNNNNNN-NNNNNNNNNNN---------NN-NNNNNNNNN-NNNNN----NN-NNNNNNNNNNNNNNNNNN-N-NNNNNNNNNTAGAAAGTAAACAAAGTTCA-----GTT----TGGAAGCATTAAGCTGAGGGTGGACATGAT--C----TTAATTCC--TTCTCAACACAATAAA--TC------------AAGGATAGA-TGTGTTGTC-C-GTGATTCGCACGCCAGCG
gi|3 : ACCTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-AGTG--ATATTT-ACACA-------------AT---GTAT--TTT----TT-------CCAAGCTGTTTATC-----------AAATTT--AAACAT--CAATGT-GAATTT-ACT--TTTTTTCATCTGAA-GATATTTA-CCCATGTAA-C-TGC-AAAATTTTTCTTTTCTACTTGGA-AC---GCG-------ACATTTTTTTTTTTT-------ACTGACCAGCAGTCC---AAAGGGATACG----AAGTTGTCGAAAATTTATTCTA---TCGCTG-CCTCAGCAAACA-AGCGCACAGGTAAA-TGC----CAGTTTT-ACATCAAT-AGATA--A-GC--A-AGGAAGAAAA--TTTGTTCATG-AACAGAAT-AT---------AA-CAAGTGACA-AAACATGC-CATTGGGTGCATTTCCTAGAA-C-AGAA------AGAAAAC-AACAAAGTTCA-----GTCTGCATGGAAGCATTAGGCTGAAAGTGGACATGAT--TTATATTAATTCC--TTCTCAACAGAATAAA--TCAGC----GTACAAAGGATAGA-TGTGTTGCCACGGTGATTCGCACGCCAGCGttatatctcttacagaaccatccagaatagaaatggatgcaagttccctcgcgtgaggcatcagtgatcttccccctcacctttacactatatgatgtcttcac
gi|4 : cATTT-ACACATCA----------AT---G-CT--TTTC---TTATT----CCAAGTTGTAAGTC---------------------AGAT--CGAT-T-AAA----ACT--TTTTCTCATCTT-----TACTC--CTG--AGCA-CCTGT-GTAATTTTTCTTTTCTACTTCAATAC---ATGCATGACAATA------TTTTCT-------ATTGACCAGCGGTAA---AGCGAAATACA----GAGTTGTC-AAAATTT-TTGAA---TCCCTG-CCAGAGCAAACA-AGCATGCAGATAAA-TAC----CGGCCTT-ACATCAAC-AGATA--A-GC--AGAAGAAGAATA--TTTGTTCATGAAAAAAAATCAT---------AA-CACATGACA-AA--A----CA-TGAGTACATTTCTAAGAACC-AGAA------AGTA----AACAAAGTTCA-----GTT----TGGAAGCTCTAGGCTGAGGATGGACATGAT--T----TTAATTCC--TTCTCAACAGAATAAA--TCAGC----ATACCAAGGATAGA-TGTGTTGT--CGGTGATTCGCACTACAGCG
gi|5 : ACTTAATATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACGCAGCGCTCTTGAT--ACAGACATATCTT-AGTG--ATATTT-ACACA-------------AC---A-AT--GCTT---TT-------C-------TT-----------------AT-------CAT--CAATGC-GAGTCT-ACT--TTTTCTCATCTTAA-GATATTT--T-----------TTC-----TTTTTTTTTTCTACTTCAAAACTTGACA-------AGA------TTTTTT-------ACTGACCAACAATAC---AACGAAATGCA----GAGTTGTCGAAA-TTT-TTAAA---TCAGCG-TCAGAGCAAACA-AGTATACAAGAAAA-TGC----CAATTTT-ACATCAGC-GGATATAA-GC--AGAGAAAGAAGA--TCTGTTCATG-AAAAGAGTCAT---------AA-CATGTGACA-AAACA----CA---AATACATTTCCAAGAACC-AGGA------AGTAAAC-AACAAAGTTCA-----GTT----TGGAAGCttatctcctacaggagaacagtccagaatggaaatggttgtaaattccctcgaatgtgttcaagagatcagtgatctccccccacactcttacactatgtt
gi|6 : CTTAACATCACATACAG-ACA-T-CAGA-TAAT-GACAGAGTTCACACAGTGCTCTTGAT--ACAGACATGTCTT-TGTG--ATATTT-ACACA-------------AG---A-ATGCTTTCTTATT-------CAAAGTTGTTAGTC-----------AGATTT--ACACAT--TAATGT-GAATCT-TCTTCTTTTCTCAT-------------------------C-TGT-GTAATTTTTCTTTTCTA--TCG-------------------A------TTTTTT-------ACTGATCAACAGTCC---AGGGAAATAGAGATTGAGTTGCCGCAAG-TT-TTCAA---TCACTG-CCAGAACAAACA-AGCA
gi|7 : A-TAAT-GACAGAGTTCACACAGTGCTCTTGAA--ACAGACATGTCTT-AGTG--ATATTT-ACACTTTTCTTGTTTCTTAT---G-TT--TCTA---TT-------CAGAGCTTTTAAACCTTGCTATTGAGAATAC--AAACAT--AAATGT-GAATCT-GCT--TTGTCTCAT
gi|8 : TG-CCCAAGCAAATG-AACATGCGGGTAAA-TGTTGGACATTCTT-ACATCAAA-AGATG--T-GC--AAA------AGA--TTTATTCATG-AATAGAATTAT---------AA-CAGGT-ATAGAAACA----CA---GGCAGATTTTTATGAA-C-AG------------TAC--ACAAAGTTCA-----TTG----TGGAAGCt
gi|9 : ACCTAATATCACATACAG-AC--T---GA-TAAT-GACAGA--TTACACA-TGCTCTTGAT--ACA-ACATGTCTTGAAT----CACTT-ACACA-------------AC---G-
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGGTGATTCACACTCCAGCGGACAGTACATAATGGAAATGGTTGTACATTCCGTCGCGTGAGGTAAAGAGATCACCGATCTTCCCCGCTTTTACACTATG
Unaligned ( gi|13 ): CAGGAGAACAGTCCAGAATGGAAGTGGTTGTAAATTTCTTCGCGCACAGTGAAGAGATCGATCTTCTCCGATACACTA
Unaligned ( gi|15 ): ATGAATATAAAAAACCTATATACGTACCAAATATTTGATGCAGCCAATGCGCATCAATGAGATGTC