lowQualScore : 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111111111111111111111 33333333333333333333333333333333333333333333333333333333333 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111 4444444444444444444444444444444444444444444444
lowQualScore : 55 99999999999999999999 333333333 22222 5555555555555 77777777777777 44 3 1 33 1 44444444444444 2222 1 11 555555 88888888 4 2 222 1 1 22 2222 1 4444 1 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 2222 1 1 55 99999999999999999 1 44 44 4 1 222 11 44444 44444444 555 77777777777777777777777 1 1 1 333 2222 11 55555555555555555 666666 55555 8888888 22 2222222222222222222222222 33333 4 8888888888888888 1 1 4 1 444444 99999999999999999999999999999999999999999999999999999999999 4 4 4 5555555 1 555555555555555 66666666666666 55 33 4 55555555555 4 444 1 6666666666 55555 4 2 44444444444 55 2 1 222 333 111 55555555 2 5555555 11 11 111 3 444444 1 11 3 11 111 1111 2 1 444444444444444 1 11 1 2 111 1 66666666666666666 1 11 5555555555555 22222 3 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6666666666666 33333 222 55555555555555555 22 8888888888888888888888888 111 11 3333 1 1 333 7777777 44444444444444444444444444444 4 1 4 3333333333333333333333333333333333333333333333 7777
lowQualScore : 55 88888888888888888888 4 88 111111111 77777 2 4444444444444 11111111111111 3 99 0 0 00 0 2 2 66666666666666 0 8888 3 66 1 000000 88888888 0 0 7 111 6 5 11 2222 5 6666 5 77777777777777777777777777777777777777777777777777777777777777777777777777777777777777 5 9999 5 5 55 4 11111111111111111 4 5 33 33 0 3 666 4 88 66666 66666666 7 6 444 7 44444444444444444444444 2 3 3 1 5 555 3333 55 55555555555555555 3 2 777777 00000 2222222 6 6 33 6 6 8888888888888888888888888 33333 6 0 9999999999999999 5 7 0 7 6 333333 6 44444444444444444444444444444444444444444444444444444444444 0 0 0 8888888 7 777777777777777 6 77777777777777 55 11 0 00000000000 0 555 5 8888888888 6 6 22222 0 8 33333333333 55 6 2 5 7 6 000 111 111 8 8 11111111 5 0 8 8 5 9999999 11 11 8 666 88 5 2 8 5 444444 6 11 0 11 8 8 88 0 999 3333 0 0 5 555555555555555 3 44 3 0 8 8 5 8 777 0 33333333333333333 3 33 3333333333333 88888 3 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 99 0000000000000 44444 555 6 0 44444444444444444 00 5 3333333333333333333333333 777 33 3 4444 0 0 333 2 7777777 0 00000000000000000000000000000 0 5 0 1111111111111111111111111111111111111111111111 6666
lowQualScore : .. .................... . .. ......... ..... . ............. .............. . .. . . .. . . . .............. . .... . .. . ...... ........ . . . ... . . .. .... . .... . ...................................................................................... . .... . . .. . ................. . . .. .. . . ... . .. ..... ........ . . ... . ....................... . . . . . ... .... .. ................. . . ...... ..... ....... . . .. . . ......................... ..... . . ................ . . . . . ...... . ........................................................... . . . ....... . ............... . .............. .. .. . ........... . ... . .......... . . ..... . . ........... .. . . . . . ... ... ... . . ........ . . . . . ....... .. .. . ... .. . . . . ...... . .. . .. . . .. . ... .... . . . ............... . .. . . . . . . ... . ................. . .. ............. ..... . ................................................................................................................................................. .. ............. ..... ... . . ................. .. . ......................... ... .. . .... . . ... . ....... . ............................. . . . .............................................. ....
lowQualScore : 00 33333333333333333333 0 00 444444444 22222 0 8888888888888 88888888888888 2 00 0 0 00 5 5 5 77777777777777 7 3333 3 66 0 333333 55555555 7 0 5 555 0 0 00 0000 0 0000 0 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5 5555 5 5 00 0 55555555555555555 0 5 00 00 0 3 000 0 33 00000 77777777 3 7 000 3 77777777777777777777777 0 3 7 0 3 000 0000 00 55555555555555555 0 5 000000 00000 0000000 0 0 00 0 0 0000000000000000000000000 00000 0 0 0000000000000000 0 0 0 0 0 000000 0 00000000000000000000000000000000000000000000000000000000000 0 0 0 0000000 0 000000000000000 0 00000000000000 00 00 0 00000000000 0 555 5 0000000000 0 0 00000 0 5 00000000000 00 7 5 2 0 0 000 222 888 0 0 00000000 2 8 0 0 0 0000000 00 00 0 888 88 0 0 0 0 222222 0 00 0 66 0 0 66 8 888 5555 4 8 0 222222222222222 3 77 2 5 0 0 0 0 555 0 55555555555555555 3 88 8888888888888 55555 8 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 22 1111111111111 00000 000 4 1 88888888888888888 44 7 6666666666666666666666666 555 88 2 5555 0 5 555 5 0000000 7 22222222222222222222222222222 0 0 0 0000000000000000000000000000000000000000000000 0000
consensus : NCAGTAG--TATAGAGCGAGTCAATTT-----TG---------ATNCACGATTAA--TTTTGC-TCATTTTGGTTCGAGAGGTAAGC-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGG-ACCAAT-CAGAATTNAGAGAGANATCGAT-AGAGT-GTCAGGTTGAAAG----AAA-TATTCACGTGATGA-AAGG-GGTACCCGAGAGG--TAT-AGTATCAAA-TTATTCTAATTAAAAATTTTACCCTTACATTGGGGCCCCCCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAAATCCCTATTCATCAACGACACGG-CATGTTACACAGNGTGTACTGATTTTGAGCGCTGTATT-GTTAAATCAA---TTAGGAACGAACACATATGTAGAAGAAAGTGACATNGTTAATTTTTGGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAGNA-TCAGATAATGATTGACAANGTAAACCGTTT-GTGGCTGC-AAGTGTAACC-TAGGTAT-TTAAC-CCAAAGTAAGTGTACATGNATCACGA--ACATGAA---TCGGAAAT-TG-----ACGGGAAAAACATGGTTGTTAC---GTAATCCGTCAAACA---ANT--TAAT-----TA----TTTTAC-ACGGAAGTAT-AGGCAGTTA-GAATCATACAAA-TGATTTATGTCGTACTTACTTGTNAGANAATTNCAACT-GTAATGGAATAAAATTTTGCC-AATCTCGCATGTTTTACACAGATTTTTT---ATCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTG-TCTGTAATATAT-TCTTGTG-C-AATG-TATAAATATCTTGTA-TTTGTTAGGTATTA-TAAG-AGGACTCGG---------TAT---AAAGTGTA-TGCA-GA----ATATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGAT-AAAGTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTG-TATTACGAAA--TTTGA--AAAG-AGAGAT--AACTCTTCAACT-ACAGAGAAGAGC-CATACATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTTNGG-TTTGAAAATTTGAAATATTTACTTAAAAAAAATT-CTA-AAG--AAATC-GGGGATCACAAA-CCTTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTT-A-T-AT-ATATCAAGGGAAGTA-ATTGTGGAACTAGG--AAATGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCT--T-ATGTGTTATATGCCATAAC--ACAT-A-AGAT-GCT-AAATTAATCTCGGAT-AT-TGC-AAACA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--TGAC------------TAAAGT--TACTAAAGTACCAAA-AGCATAC-AG----ATCAAAAT----TCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAA---NCCCCAAAATGT-AACACAT--CAAAGTCAACAT---CCATG----TTA-GGATGACCTTG--CACCTGG-AGAGA--TG---ACGCAAA--GGTCAAGGACCAAAGAACATTTCAAACANGTTCAAA-C-AAATTCAATATCCAT----G----AT--CCTTGACCCTNGGAGAT-GCAAAGGTCA-AGG----------TCGTAAACA-CTCAAAC---AAA--CAAA--ATG-ACCATG-AGCCTGGGGGG----AGCAGAAATCAAGGCC---GAAT-TTAC-AAAT--TCACCG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAACT---GCATGTGGTTTGC
Reference ( gi|1 ) : GCAGTAGACTATAGAGCGAGTCAATTT-----TG---------TTACACGACTAATATTTTGCCTCATTTTGGTTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAAC-G-ACCAATCCAGTATTGAGAGAGAGATCGAT-ATAGTCGTCAGGTTGGAAG----AAA-TATTCACGTGATAACAAGGCGGTACCCGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCC-TT-GGACCGACTTAA--T-CTATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGACAATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTAAAGTAAGTGTACATGTATCACGA--ACATG-A---TCGGAAATATG-----ACGGGAAAAACATGGTTGTTACAAAATAATCCGTCAAACA---ACT--TAAT-----TA----TTGTAC-ACGAAAGTATAAGGCAGTTAGGAATCATATAAATTGATTTATG-CGTA-TTACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATC-AAACTTCCTACATTGTTATACCCAGAATTTAC-ACATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAAT-AAATAATGTTCCTTATATGGATAGTTAACAACCGTGT-GACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTA-CCAG-AAATAGGCCTGTGGGTGGGTTTGGGTTTTGAAAATTTG-AATATTTACTTAAAAAAAATT-CTA-AAGGAAAATCTGGGGATCACAAAACCTTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTT-A-T-AT-ATATCAAGGGCA-TA-ATTGTGCAAC--AG--AAA-GA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCT--T-ATGTGTTATATGCCATAA---ACAT---AGATGGCT-AAATTAATCTCGAAT-AT-TGCCAAACA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--TGAC------------TAAAGT--TACTAAAGTACCAAACAGCATACTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCA-GCAAATGG-CAA---TCCCCAAACTGCTAACACATTTCAAAGTCAACATTCCCTATATTTATTA-GGATGACCTTGAACACCTGGCAGAGACCTGACCACACAAA--GGTCAAGGACCAAAGAACATCTCAAAGACGGTCAAA-G-AAATTCAATATCCAT----G----AT--CCTTGACCCCTGGAGAT-GCAAAGGTCATAGG----------TCATAACCA-CTCAAAC---AAA--CAA---ATG-ACCTTGAAGCCTGGGGAGCGAAAGCAGAGATCAAGGCCCGTGAATGTTACCAAAT--TCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAAG-CCG------------------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGCCC
gi|21 : CAATAG--TATAGAGCGAGTCAA-TT-----TG---------ATCCACGACTAA---TTTGC
gi|2 : AGTAG--TATAGAGCGAGTCAATT-------G---------ATACACGATTAAT-TTTTGC-TCATTT-GGT-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA----AGGACCAATCAGAAATCAGGA--AGTGACGAAAC-GGACCAATC-AGTATTGAGAGAGA-AT-GAT-AAAGT-GTCAGGTTGGAAG----AAA-TAT-CACGTGATAA-AAGG-GGTACCCGAGAG---TAT-AGTGTCAAA-TTATTCTAATTAA-AATTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATCT-TTTGGAC-GACTTAAATC-CTATTCAT---CGACACG--CATGT---ACAAG-TGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG------CA---------AAAAA-GTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAAGTAAACTATTT-GTGACTGT--AGTGTAACC-TAGGTATGTTAAC-CTACAGTAAGTGTACATGTATCACGA--ACATGAA---TCGGAAAT-TG-----ACGGGAAAAACATGGTTGTTAC-AAATAATCCGTCAAACA---AC---TAAT-----TAT---TTATAC-ACGGAAGTATAAGGCAGTTA-GAATCAT-TAAAATGATTTATGTCGTACTTA--TG-GAGAAAATTCCAACT-GTAATGGAATAAAATTTTGCC-AATCTCGCATGTTTTACACAGATTTTTT---ATCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTG-TCTGTAATATAT-TCTTGTG-C-AATG-TATAAATATCTTGTA-TTTGTTAGGTATTA-TAAG-AGGACTCGG---------TAT---AAAGTGTA-TGCA-GA----ATATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGAT-AAAGTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTG-TATTACGAAA--TTTGA--AAAG-AGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATACATG-ACAATAAATAAAATAA---TCCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTTGGG-TTTGAAAATTTGAAATA-TTACTT---AAAAATT-CTA-AAG--AAATC-GGGGATCACAAA--CCTTCTTGTAGTTGTT-AT-GAGCGAAAAGG----ATGATTGAATC--AGAGGCG--CTCAGTTT-A---AT-ATATCAAGGGCAGTA-ATTGTGCAACTAGG--AAA-GA--CAACTCCAA-AGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCT--T-ATGTG-TATATGCt
gi|14 : AGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCG-TTAAAATTT--ACTCATTTT--TTTGAGAGGTAAG-------------CCCTATGGGA--GTGGA-CCAATCAGAAATAATGA--AGTGACAAAACGG-ACCAAT-CAGAATTTAAAGAAATATCa
gi|13 : TTTGC-TCATTT-GGT-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGG-ATCAAT-CAGAATTTAGAGGGAG--TAAT-AGA-TTGTCAGGTTTAAAC----AAA-TA-GCACTTGATGA-AACG-GGTTCCCacgttatgaaaggggtacccgagaggatagtatcaagtta
gi|6 : gttaattttttatccacgggtaaggtttgctcagtaaaaTGGATCAAGATGTATGC-CAAGGGAGCGGCCCTAAGGG--AATGG-ACC-------AATC-GGA-AAGGGATAAAACGG-ACCGAT-CAGAATGGAGA-AAAAAT-GATAAGAGT-ATCATTTTGAAAGTATCAAATTATTC
gi|14 : ttgccaTCACGTTATGA-AAGG-GGTACCCGAGAGG---AT-AGTATCAAtaattaaaaattcccttacattggggcctctccgcgaagtatggaacagtcactaatcctttggaccgacttaatcctattatcaacacacggatgtacaagtgtatactgagctgtagtaatcaattaggaacgaatacatatgtagaagaaagtgattgttaattttggtg
gi|6 : agtagtatagagctagacaatataatcatgggttaaggtttgctcgttaaaatttactcatttttttgagaggtaagccctatgggagtggaccaatcagaaataatgaagtgacaaaacggaccaatcagaatttaaagaaataAGTATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCCTTT-GGACCGACTTAA--TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTGAT-TG-TTAA-TTTTGGTGgtta
gi|10 : ttgccatggatcaagatgtatgccaagggagcggccctaagggaatggaccaatcggaaagggataaaacggaccgatcagaatggagaaaaaatgataagagtatcattttgaaTGAAAAAAAGAA------------TT---AATGTAA-CCGTT--GTGGCTGC-AGGTGTAACC-TAGGTAT-TTGCCAC--AAGTAGGTATACATTGATCAAGAAGACATG-GTTTTTAGGAATTTGTTTTAAGAGGAAGGACTTAGGAGTTAC---GTAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTTTACAAAGAAAGTAACAAGCAGT--ATAATT-TACAAATGCATTTA-G-C-TATTTACTTATTAGACAATTACAACT
gi|15 : cagacaatgattAATGTAACC-TAGGTAT-TTAAC-CCAAAGTAAGTGTACATGCAGCACGA--ACATGAA---TCGGAAAT-TG-----ACGGG-AAAACATGATT-TTAC---ATAATCCGTCAAACATGCAAT--TGAT-----TA----TTTTAC-ATGGAAGTAT-AGGCAGTTA-GAATCACA-AA--TGATTT
gi|5 : GAGAT--AACTCT-CAACT-ACAGAGAAGAGC--ATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTTGGG-TTTGAAAA--TGAAATAGTTACTT---AAAAATTCCTACAAG--AAATC-GGGGATCACAAA--CCTTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTAA-T-AT--TATCAAGGGCAGTA-ATTGTGCAAC--TGGAAAA-GA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCT--TGATGTG-TATATG-CATAA---
gi|8 : GGTGGGTTTTGGGTATGAAAACTTG-AATA-TTACTT---CAAAATT-CTC-AAG--AAATATACGGGTCACAAAACCTTTC-TGTAGTTGTT-AT-ACGC-AAAAAAGG--ATGATTGAATC--AGAGGTG--TCAAATTT-ATT-AT-ATATCAAGGGAAGTATTTTGTGGGACT-GG--AAATGA--CAACGCCAA-AGTGTTTGG-C-AATCATTCGGATAGGACAGCATCT--TAATGTGTATTATGGCATAAC--ACATAAGAGAT-GCTAAAATTAcac
gi|12 : gtTTTCGACTTTGAAAATTTG-AATATC-ACTTAAAAA---TT-CTA-AAG---AATTAGGGGATCACAAACCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTT-A-TGATAACATCAAGGAAG-TA-ATGGTGGAACTAGG--AAA-GAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCT--T-ATGTt
gi|11 : TTG-AATATT-ACTTAAAAA---TT-CTA-AAGAAATA---GGGGTTCACAAA-CCTTTCTTGTAGTTGTT-AT-GAGCGGAAAAGGG---TGATTGAATC--AGAGGCG--CTCAATTT-A-T-AT-ATATCAAGGGAAGTA-ATTGTGGAACT-AG--GAATGA--CAACTTCAA-AGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCT--T-ATGTG-TATATG-CATAAC--ACAT---AGAT-GCT-AAATTtgt
gi|8 : cAGCATCTCTT-ATGTGTTAT--GCCATAATACACATTA-AGAT-GCT-GTCCT-ATC-CGAATGAT-TGCCAAACA-g
gi|22 : gtggtgggttttgggtatgaaaacttgaatattacttcaaaattctcaagaaatatacgggtcacaaaacctttctgtagttgttatacgcaaaaaaggatgattgaatcagaggtgtcaaatttattatatatcaagggaagtattttgtgggactggaaatgacaacgccaaagATTA-TCTCAGAT-AT-TGC-AAACA-GA---CATAACCAA--T--------------Taaaattat
gi|3 : cATCTCAGAT-AT-TGC-AAACA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--TGAC------------TAAGGT---ACTAAAGTACCAAA-AGCATAC-AG----ATCAAAA-----TCAAATTGTGGGCT-GC--CTCA-G-AAATGG-CAA---GCCCCAAACTGT--ACACAT--CAAAGTCAACATCCATTATA--------GGATGACCTTGA-C-CCTGG--GAGA--TG------CAAA--GGTCAAGGAC--AAGAACAT-TCAAAGAGGTTCAAAAG-AAATTCAATAT--AT----G----A---CCTTGACCCTGGGAGATTGCAAAGGTCA-AGG----------TT-CAAACA--TCAAAC---AAA--CAA----TG-ACCATGA--CCTGGG-----AGAGCAGAGATCAAGGCC---GAAT-TTAC-AAAT------CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAACT---GCATGTGGTTTGC
gi|17 : tCTC-AGT-AT-TGC-AAACAAGA---CACAA-AAA--T--------------TTTTATTTGGC--TGAC------------TAAAGG--TACTAAAGTACCAAA-AGCATAC-AG----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCA-GAAAacc
gi|4 : AT-ATGTGCAAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGATAACAGGGCACGGTGATAAAGTGGTACTAAAATACCAAAAAGCATAC-------A--AAAAT----TCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TACCACAT--CAAAGTCAGCAT---CCATG-----TA-GAATGATC-TG---ACCTAGAAAA----TG----CAAAAATTGGTCAAGGAGCAA--GCCAATTCAACAA-GCTCAAA-C-AAATTCAAAAT--AT----G----A---ACTTGACCCTGGGAGAT-GCAAAGGTCA-AGG----------T--TCAACA--TCAATC---AAA--C-A---ATGAACCATG-AGCCT-GGGAGT---AGCAGAAATCAAGGTCC-CGAAT-TTAC--AATCATCAC
gi|7 : tcagagGGC--TGA-------------TAAA---------AAGTACCAAA-GGCATAC-A----AATCAAAAT----TCAAATTGTGGGCT-GC--CTCACACAAATGG-CAG---GCCC-------CCAATACAT------------------TATATCAATAAGGGATGGCCTTG---ACCCAGAAGA----TG------TAAA--CGTCAAGGTC--GAGA----TTCAAACATG---AAA-C-AAA--CATTA-CCAT----G----AG--CCTgttttaatgcacaactaagccgctcat
gi|18 : agatattgcaagcagaaagaaatgatatttggtttctatatcttattggctataaaaggcacTCAAATTGTGGGCTT-C--CTCA--CAAATGG-CAA---T-CCCAAAATGT--ACAAA--TCAAAGTCAACAT---CCAT-----TTA-GGGTGACTTTG-AC-CCTGG--GAG--------ACGCAAA--GGTCAAgggaggagcagaaatcaagaccgaatttacaagatcg
gi|16 : CAAAATGT--ACACAT--CAAAGTCAACAT---CCATG-----TA-GAATGATCTTG---ACCT---AGAAA-------ATGCAAA--TGTCAAGGAC--AAGCAAAT-TCAAACAAGCTCAAA-C-AAATTCAAAAT--AT----G----A---CCTTGA-CCCTGG
gi|9 : AACACC-----AAAATCTAAC-ACAAAAA--GGTCAAGA--CACATAA-AT-TCAAACAACTTCAAA-CCAAAATCAGTTT--AT----A----A---CCTTGACTCTCAGAGAT-GCAAAGATCA-AGG----------TC
gi|18 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagagtaacaataccaaaagcataacaaccaaatttaaaactgtagtgcctaaaaatggaaATCCCAAA-ATGTACAAA-TCAAAGTCAACATCCATTTAGG----GTGACTTTGACCCTGGGAGAC-GCAAAGGTCAgagattgacatcc
gi|16 : tcaaattgtgggcttcctcacaaatggcaTCAAA-G-----TCAACATCCAT----GTAGAATGATCTTGACCTA-GAAAAT-GCAAATGTCA-AGGACAAGCAAATTCA-AACAAGCTCAAAC---AAATTCAAAATATG-ACCTTG-ACCCTGGa
gi|3 : caaaatgtacacaTTGAATGTTCTT----G-----T--CCTTGACCTTTGCATCT-CCCAGGGTCA-AGG----------TCAT
gi|7 : tatctcagatattgcaaacagacacaacaaatttttatttggctgactaaggtactaaagtaccaaaagcatacagatcaaaatcaaattgtgggctgcctcagaaatggcaagccccaaactgtacacatcaaagtcaacatccattataggATATCAATAAGGG----ATGGCCTTGACCCA-GAAGAT-GTAAACGTCA-AGG----------TCG-AG--A-TTCAAACATGAAA--CAAAC-ATT-ACCATG-AGCCTGGGAGG----AGCAGAAATCAAGACC---GAAT-TTACAAGAT--agaggttcaaaagaaattcaatatatgaccttgaccctgggagattgcaaaggtcaaggttcaaacatcaaacaaacaatgaccatgacctgggagagcagagatcaaggccgaatttacaaatcgaatgtcacatgttttcaaacgtacaaactaaggccgctcgttgnnnnnnnnnnnnnnnnnnnnnnnnntgccaaaagactaaactgcatgtggtttgcacc
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): CACAGAAGTGTAAGTAGTTAGAATCACAAACGATTTATGTCCTATTTATG
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG
Alignments
lowQualScore : 11111111111111111111111111111111
lowQualScore : 11 55555555555555555555 222 11111 111 1 11 11 111 22222222 333333333333333333 1111 4444444 1 11 33333 3333 222 1111111111 44444444444444444 222 99999999999999999 22 22222 1 222 1 1 1 1 11 111 1 22222 333333 22222222 22222222222 1 22 111 1 222 22222 2 333 1 1 2 2 1 55555 2 2 2 2222 2 2 2 888888888 333 2 2 4444 555555 2 1 2 2 2 2 22 1 2 2 22 22 1 11 11 1 222 2 1 1 11 1 1 1 1 1 11 2 1 1 11 11111 1 11 1 222 1 1 1 11 1 2 1 3333 1 1 111 33333333333333333 6666666666666666666666666666666 111 1111 111111 22222 1111 1 222 1 333333333333 333 666666666666666 1111 4444444444444 1 33 3 11 2 2222 1 22 44444 11 222 1 1 555555555555 1 1 11 55555555555555555555555555555555 333 333
lowQualScore : 33 77777777777777777777 1 222 8 8 22222 333 8 3 11 3 44 0 0 111 6 3 55555555 1 1 6 6 33 666666666666666666 1 99 8 7777 2222222 0 7 7 3 0 0 44 7 6 66666 6 5555 666 5555555555 0 00000000000000000 7 333 88888888888888888 0 7 77 7 7 77 11 55555 7 7 5 888 3 0 111 0 0 3 0 0 1 33 9 777 0 55555 3 2 333333 3 66666666 88888888888 0 8 8 8 8 0 8 11 8 8 3 222 0 6 555 1 1 00000 55 0 555 5 4 5 0 0 5 00000 2 2 0 0 4 0 1111 3 4 0 4 0 0 000000000 555 3 0 0 2222 4 4 777777 0 5 0 0 0 0 77 4 5 66 0 0 77 77 3 88 44 3 666 3 3 7 7 3 7 88 6 3 3 3 6 3 6 7 88 2 1 8 8 8 3 3 3 5 1 44 6 6 99 66666 3 44 6 6 1 7 99 99 99 000 6 6 3 6 2 1 9 99 5 7 6 6 6 55 3 0 5 2 3333 3 3 7 2 6 6 6 6 111 99 99999999999999999 8 4444444444444444444444444444444 444 5555 999999 6 99 666 6 6 33333 2222 0 77 777 6 1 6 999 5 5 77 0 111111111111 222 444444444444444 2222 6666666666666 1 8 3 3 00 1 1 8 8 11 3 9999 3 00 0 33333 1 88 333 3 3 111111111111 7 3 6 7 3 33 66666666666666666666666666666666 3 555 555
lowQualScore : .. .................... . ... . . ..... ... . . .. . .. . . ... . . ........ . . . . .. .................. . .. . .... ....... . . . . . . .. . . ..... . .... ... .......... . ................. . ... ................. . . .. . . .. .. ..... . . . ... . . ... . . . . . . .. . ... . ..... . . ...... . ........ ........... . . . . . . . .. . . . ... . . ... . . ..... .. . ... . . . . . . ..... . . . . . . .... . . . . . . ......... ... . . . .... . . ...... . . . . . . .. . . .. . . .. .. . .. .. . ... . . . . . . .. . . . . . . . . .. . . . . . . . . . . .. . . .. ..... . .. . . . . .. .. .. ... . . . . . . . .. . . . . . .. . . . . .... . . . . . . . . ... .. ................. . ............................... ... .... ...... . .. ... . . ..... .... . .. ... . . . ... . . .. . ............ ... ............... .... ............. . . . . .. . . . . .. . .... . .. . ..... . .. ... . . ............ . . . . . .. ................................ . ... ...
lowQualScore : 88 22222222222222222222 0 222 0 0 44444 666 0 2 00 8 44 8 8 888 7 3 22222222 0 0 7 7 55 000000000000000000 4 00 0 0000 0000000 0 3 3 7 7 7 00 3 7 33333 7 7777 777 0000000000 7 77777777777777777 3 333 77777777777777777 7 3 77 3 3 55 77 00000 3 3 7 777 3 7 333 0 0 2 0 0 0 88 8 555 0 00000 2 5 222222 2 55555555 22222222222 0 0 0 0 0 8 0 00 0 0 2 000 5 7 333 0 0 55555 55 0 000 5 0 5 0 0 5 00000 5 5 0 0 0 0 0000 0 0 0 0 0 0 000000000 000 0 0 0 5555 0 0 555555 0 5 0 0 0 0 55 0 0 55 0 0 55 55 3 33 77 3 777 3 3 3 3 3 3 33 7 3 3 3 0 3 7 3 33 5 0 0 0 0 8 7 2 5 3 33 7 7 22 77777 3 00 7 7 0 7 22 22 22 777 7 7 0 7 5 3 8 22 5 3 7 7 7 88 3 4 0 5 0000 3 3 3 0 7 7 7 7 777 22 33333333333333333 0 2222222222222222222222222222222 000 4444 222222 7 22 888 7 7 55555 1111 6 99 333 7 0 7 111 7 4 99 1 111111111111 555 000000000000000 1111 5555555555555 0 2 3 5 00 8 0 0 0 44 3 0000 3 00 7 33333 0 33 333 3 3 000000000000 3 3 7 3 3 33 22222222222222222222222222222222 0 000 000
consensus : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAGC-G-TCAGGTTGGAAG----AAA-TAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA--CCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGACAA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTAC--A---TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGT-AT-A-GGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGA-GAGAT--AACTCTTCAACT-ACAGAGAAGAGCC-ATA-ATG-ACAATAAATAAAATAATGT-CCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATGT-CATTTT-AGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTTGGG-TT-T-GAAAATTTGAA-TATTTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCACAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAA-GA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACATA--AGATG-CT-AAATTAATCTCAGATAT-TGC-AAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAAT----TCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TAACACAT--CAAAGTCAACATCC-----AT--GTTAGGATGACCTTG---ACCTGG-AGAGA--TGAC---GCAAA----GGTCAAGGAC--AAGAACAT---TTCAAACANGCTCAAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGAT-GCAAAGGTCA-AGGTCGTAAACA-TCAAACAAACAAA-TG-ACCATGA-GCCTGGGAG-----AGCAGAGATCAAGG--CC---GAAT-TTAC-AAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
Reference ( family-3152 ) : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TNCACGATTAAT--TTT-GC-TCATTTTGGTTCGAGAGGTAAGC-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTNAGAGAGANATCGAT-AGAGT-G-TCAGGTTGAAAG----AAA-TATTCACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTATCAAA-TTATTCTAATTAAAAATTTTACCCTTACATTGGGGCCCCCCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAAATCCCTATTCATCAACGACACGGC-ATGTTACACAGNGTGTACTGATTTTGAGCGCTGTATT-GTTAAATCAA---TTAGGAACGAACACATATGTAGAAGAAAGTGACATNGTTAATTTTTGGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAGNA-TCAGATAATGATTGACAANGTAAACCGTTT-GTGGCTGC-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGNATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTAC--G---TAATCCGTCAAACA---ANT--TAAT-----TA----TTT-TAC-ACGGAAGT-AT-A-GGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTACTTACTTGTNAGANAATTNCAACTG-TAATGGAATAAAATTTTGCCAA-TCTCGCATGTTTTACACAGATTTTTTA---TCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTGT-CTGTAATATAT-TCTTGTG-CAA-TG-TATAAATATCTTGTATTT-GTTAGGTATTAT-AAG-AGGACTCGG---------TATAA---AGTGTAT-GCA-GAA----TATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGATAAA-GTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTGT-ATTACGAAA--TTTGA--AAAGA-GAGAT--AACTCTTCAACT-ACAGAGAAGAGCC-ATACATG-ACAATAAATAAAATAATGT-CCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATGT-CATTTT-AGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTTNGG-TT-T-GAAAATTTGAAATATTTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCACAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGGAAATGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACATA--AGATG-CT-AAATTAATCTCGGATAT-TGC-AAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAAT----TCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAANC-CCCAAAA--TG-TAACACAT--CAAAGTCAACATCC-----AT--GTTAGGATGACCTTG--CACCTGG-AGAGA--TGAC---GCAAA----GGTCAAGGACCAAAGAACAT---TTCAAACANGTTCAAAC-AAATTCAATATCCATGATCCTTGACCCTNGGAGAT-GCAAAGGTCA-AGGTCGTAAACACTCAAACAAACAAAATG-ACCATGA-GCCTGGGGGG----AGCAGAAATCAAGG--CC---GAAT-TTAC-AAATTCACCG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAACT---GCATGTGGTTTGC
gi|1 : CAGTAGACTATAGAGCGAGTCAAT-------T---TTGT----TACACGACTAATATTTT-GCCTCATTTTGGTTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAACG-ACCAATCCAGTATTGAGAGAGAGATCGAT-ATAGTCG-TCAGGTTGGAAG----AAA-TATTCACGTGATAACAAGGCGGTACC----CGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCCTT--GGACCGACTTAA---TCTATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGACAATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTA-AAGTAAGTGTACATGTATCACGA--ACATGA-TC---GGAAATATG-----ACGGGAAAAACATGGTTGTTAC--AAAATAATCCGTCAAACA---ACT--TAAT-----TA----TTG-TAC-ACGAAAGT-AT-AAGGCAGTTAGGAATCATATAAATTG-ATTTATG-CGTA-TTACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAA-CTTCCTACATTGTTATACCCAGAATTTACA-CATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAATAAA-TAATGTTCCTTATATGGATAGTTAACAACCGTGTG-ACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTACC-AGAAA-TAGGCCTGTGGGTGGGTTTGGG-TT-TTGAAAATTTGAA-TATTTACTTAAAAAAAATT-CTA-AAGGAAAAT---CTGGGGATCACAAAACC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGCA-TA-ATTGTGCAAC--AGAAA-GA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAA-ACATA---GATGGCT-AAATTAATCTCGAATAT-TGCCAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAACA-GCATA-CTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCA-GCAAATGG-CAATC-CCCAAAC--TGCTAACACATTTCAAAGTCAACATTCCCTATATTTATTAGGATGACCTTGAACACCTGGCAGAGACCTGACCACACAAA----GGTCAAGGACCAAAGAACAT---CTCAAAGACGGTCAAAG-AAATTCAATATCCATGATCCTTGACCCCTGGAGAT-GCAAAGGTCATAGGTCATAACCACTCAAACAAACAAA-TG-ACCTTGAAGCCTGGGGAGCGAAAGCAGAGATCAAGG--CCCGTGAATGTTACCAAATTCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAAG-CCG------------------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGC
gi|10 : gTGAAAAAAAGAA-T----TAATG-T----------AACCG-TT-GTGGCTGC-AGGTGTAACC-TAGGTAT-TTG---CCACAAGTAGGTATACATTGATCAAGAAGACATGGTTTTTAGGAATT-TGTTTTAAGAGGAAGGACTTAGGAGTTAC--G---TAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTT-TACAAAGAAAGTAAC-A-AGCAG-TAT-AATT-TACAAAT-GCATTTA-GC--TATTTACTTATTAGACAATTACAACTcc
gi|11 : cagacaatgattTTGAA-TATT-ACTTAAAAA---TT-CTA-AAG--AAAT---A-GGGGTTCACAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAA-AGG--GTGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGG-AATGA--CAACTTC-AAAGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCTT-ATGTG-TATATG-CATAACACAT---AGATG-CT-AAATT
gi|12 : cTTTCGACTT-T-GAAAATTTGAA-TATC-ACTTAAAA---ATT-CTA-AAG--AATT---A-GGGGATCACAAA-CCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTTA-TGATAA-CATCAA-GGAAGTA-ATGGTGGAACTAGGAAA-GAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCTT-ATGTg
gi|13 : AAA--TTT-GC-TCATTT-GGT-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGGATCAATC-AGAATTTAGAGGGAG--TAAT-AGATT-G-TCAGGTTTAAAC----AAA-TA-GCACTTGATGA-AACG-GGTTCC----Ctgt
gi|14 : gttaattttttatccacgggtaaggtttgctcagtaAGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCGTTAAAA--TTT-AC-TCATTTT--TTTGAGAGGTAA-------------GCCCTATGGGA--GTGG-ACCAATCAGAAATAATGA--AGTGACAAAACGGACCAATC-AGAATTTAAAGAAATATC-------AC-G-TTA---TGAAA--------------------------GG-GGTACC----CGAGAGG---AT-AGTATCAAG-TTA
gi|15 : AATGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGCAGCACGA--ACATGAATC---GGAAAT-TG-----ACGGG-AAAACATGATT-TTAC--A---TAATCCGTCAAACATGCAAT--TGAT-----TA----TTT-TAC-ATGGAAGT-AT-A-GGCAGTTAG-AATC--ACAAAT-G-ATTT
gi|16 : CAAAA--TG-TA-CACAT--CAAAGTCAACATCC-----AT--G-TAGAATGATCTTG---ACCTAG-AAA------AT---GCAAA----TGTCAAGGAC--AAGCAAA----TTCAAACAAGCTCAAAC-AAATTCAAAAT--ATGA-CCTTGACCCTGG
gi|17 : CTCAG-TAT-TGC-AAA-CAAGA---CACAA-AAA--T--------------TTTTATTTGGC--T-------------GAC------------TA---AAGG--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAAT----TCAAATTGTGGGC-TGC--CTCA-GAAA
gi|18 : ----TCAAATTGTGGGCTT-C--CTCA--CAAATGG-CAATC-CC-AAAA--TG-TA-CAAAT--CAAAGTCAACATCC-----AT---TTAGGGTGACTTTG--ACCCTGG--GA-----GAC---GCAAA----GGTCAA
gi|19 : C-ACAGAAGT-GT-A-AGTAGTTAG-AATC--ACAAAC-G-ATTTATGTCCTATTTA
gi|2 : AGTAG--TATAGAGCGAGTCAAT-------T-----GA----TACACGATTAAT--TTTTGC-TCATTT-GGT-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA--A--GGACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGTATTGAGAGAGA-AT-GAT-AAAGT-G-TCAGGTTGGAAG----AAA-TAT-CACGTGATAA-AAGG-GGTACC----CGAGAG-T--AT-AGTGTCAAA-TTATTCTAATTAAAA-TTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATC-TTTTGGAC-GACTTAAATCC-TATTCATC---GACACG-C-ATGT---ACA-AGTGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG--------CA--------AAAAAGTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAAGTAAACTATTT-GTGACTGT--AGTGTAACC-TAGGTATGTTAAC-CTA-CAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA---TAATCCGTCAAACA---AC---TAAT-----TA----TTTATAC-ACGGAAGT-ATAA-GGCAGTTAG-AATCATTAAAAT-G-ATTTATGTCGTACTTA--TG-GAGAAAATTCCAACTG-TAATGGAATAAAATTTTGCCAA-TCTCGCATGTTTTACACAGATTTTTTA---TCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTGT-CTGTAATATAT-TCTTGTG-CAA-TG-TATAAATATCTTGTATTT-GTTAGGTATTAT-AAG-AGGACTCGG---------TATAA---AGTGTAT-GCA-GAA----TATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGATAAA-GTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTGT-ATTACGAAA--TTTGA--AAAGA-GAGAT--AACTC-TCAACT-ACAGAGAAGAG-C-ATACATG-ACAATAAATAAAATAA--T-CCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATGT-CATTTT-AGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTTGGG-TT-T-GAAAATTTGAAATA-TTACTT---AAAAATT-CTA-AAG--AAAT---C-GGGGATCACAAA-CC--TTCTTGTAGTTGTT-AT-GAGCG--AAAAGG--ATGATTGAATC--AGAGGCG--CTCAGTTTA---AT-A-TATCAAGGGCAGTA-ATTGTGCAACTAGGAAA-GA--CAACTCC-AAAGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCTT-ATGTG-TATATGCtg
gi|21 : CAATAG--TATAGAGCGAGTCAA--------T---TTGA----TCCACGACTAA---TTT-GC-Ta
gi|22 : ATTA-TCTCAGATAT-TGC-AAA-CA-GA---CATAACCAA--T--------------T
gi|3 : cATCTCAGATAT-TGC-AAA-CA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--T-------------GAC------------TA---AGGT---AC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAAT-----CAAATTGTGGGCT-GC--CTCA-G-AAATGG-CAAGC-CCCAAAC--TG-TA-CACAT--CAAAGTCAACATCC-----AT--TATAGGATGACCTTG--ACCCTGG--GAGA--TG------CAAA----GGTCAAGGAC--AAGAACAT---T-CAAAGAGGTTCAAAAGAAATTCAATAT--ATGA-CCTTGACCCTGGGAGATTGCAAAGGTCA-AGGTT-CAAACA-TCAAACAAACAA--TG-ACCATGA--CCTGGGAG-----AGCAGAGATCAAGG--CC---GAAT-TTAC-AAAT----CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAACT---GCATGTGGTTTGC
gi|4 : tGATATGTGC-AAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGAT-------------AACAGGGCACGGTGATA---AAGTGGTAC------TAA-A--ATACCAAA-AAGCATA-C-A--------AAAAT----TCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TACCACAT--CAAAGTCAGCATCC-----AT--GT-AGAATGATCT-G---ACCTAG-AAA------AT---GCAAAAATTGGTCAAGGAGCAAGC--CAA---TTCAA-CAAGCTCAAAC-AAATTCAAAAT--ATGA-ACTTGACCCTGGGAGAT-GCAAAGGTCA-AGGT--TCAACA-TCAATCAAAC--AATGAACCATGA-GCCTGGGAGT----AGCAGAAATCAAGGTCCC---GAAT-TTAC-AA--TCA-----------TCAC--G-TTTT--AATGCAC-A-ACTAA-GCCGCTCATacc
gi|5 : tcaga-GAGAT--AACTCT-CAACT-ACAGAGAAGAGC--ATA-ATG-ACAATAAATAAAATAATGT-CCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATGT-CATTTT-AGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTTGGG-TT-T-GAAAA--TGAAATAGTTACTT---AAAAATTCCTACAAG--AAAT---C-GGGGATCACAAA-CC--TTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTA---AT-ATTATCAAGGGCAGTA-ATTGTGCAACT-GGAAAAGA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCTTGATGTG-TATATG-CATAACAC
gi|6 : TGGATCAAGATGTATGC-CAAGGGAGCGGCCCTAAGGGA--ATGGA-CCAATCGGAAA---GG------GATAAAACGGACCGATC-AGAATGGAGA-AAAAAT-GATAAGAGT-A-TCATTTTGAAAGTATCAAATTATTC
gi|6 : ttgccaGGAATGGACCAATC-GGAA---AGGGATAAAACG----GACC-GATCAGAATGGAGA----AAA----------AATGA-TAAG-AGTATCATTTTGAAAG---------TATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCC-TTTGGACCGACTTAA--TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTG--ATTGTTAA-TTTTGGTGtaattaaaaattcccttacattggggcctctccgcgaagtatggaacagtcactaatcctttggaccgacttaatcctattatcaacacacggatgtacaagtgtatactgagctgtagtaatcaattaggaacgaatacatatgtagaagaaagtgattgttaattttggtg
gi|7 : ttgccatggatcaagatgtatgccaagggagcggccctaagGATAT-TGC-AAG-CA-GA---AAGAA---A--T--------------GAT-ATTTGGT--TTCTATATCTTATTGGC------------TATAAAAGG--CACGGCTGATAA-AAAGTACCAAA-G-GCATA-C-AA----ATCAAAAT----TCAAATTGTGGGC-TGC--CTCACACAAATGG-CAGGC-CCC---------CAATACAT--TATA-TCAATA--------A------GGGATGGCCTTG---ACCCAG-A-AGA--T------GTAAA----CGTCAAGGTC--GAGA-------TTCAAACATG---AAAC-AAA--CATTA-CCATGA-----G--CCTGGGAGGA-GCAGAAATCA-AGACCG
gi|8 : aGGTGGGTTTTGG-GTAT-GAAAACTTGAA-TATT-ACTTCAAAA---TT-CTC-AAG--AAATATAC-GGG--TCACAAAACC-TTTCT-GTAGTTGTT-AT-ACGCAAAAA-AGG--ATGATTGAATC--AGAGGTG--TCAAATTTATT-AT-A-TATCAAGGGAAGTATTTTGTGGGACT-GGAAATGA--CAACGCC-AAAGTGTTTGG-C-AATCATTCGGATAGGACAGCATCTTAATGTGTATTATGGCATAACACATAAGAGATG-CTAAAATTAaatttacaagatcg
gi|9 : gt------TAACA--ATACCAAA-A-GCATAAC-A-----ACCAAATT----TAAAACTGTAG---TGC--CTAA---AAATGG-AAAAC-ACCAAAA--TC-TAACACAA--AAAGGTCAAGACAC-----AT--t
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagagAAA----GGTCAAG-AC------ACATAAATTCAAACAACTTCAAACCAAAATCAGTTT--ATAA-CCTTGACTCTCAGAGAT-GCAAAGATCA-AGGTCGaaattcaaacaacttcaaaccaaaatcagtttataaccttgactctcagagatgcaaagatcaaggtcgagattgacatcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG
Alignments
lowQualScore : 11111111111111111
lowQualScore : 11 55555555555555555555 111 11111 111 1 11 11 111 2222222222222 111111 1111 4444444 1 11 11 3333 222 11 11 33333333333333333 222 77777777777777777 11 1 1 2 1 1 1 1 1 1 11 111 1 22222 333 111 1111 22222222222 1 1 22 111 1 1 11 1 222 1 1 1 1 1 22222 1 1 1 1 1 1 1 1 333333333 222 1 1 2222 222222 1 1 1 1 1 1 11 1 1 1 11 11 2 11 2 1 222 1 1 22 11 1 1 1 2 1 11 111 1 11 11111 11 1 222 1 11 1 2 1 444 1 1 111 33333333333333333 6666666666666666666666666666666 111 1111 111111 22222 1111 1 222 1 1111 33333333 111 44444444444 11111 2222222222 11 1 2 1 1 33333 1 11 222 1 1 555555555555 1 1 2 44444444444444444 222 222
lowQualScore : 33 77777777777777777777 0 999 8 8 22222 222 8 3 11 3 44 0 0 111 6 2 8888888888888 6 1 44 333333 8 8 7777 2222222 0 7 7 1 0 44 7 6 99 6 6 1111 666 44 6 44 77777777777777777 7 333 99999999999999999 7 7 6 7 7 88 3 3 7 6 7 3 3 7 0 0 3 0 0 0 33 9 777 0 55555 3 2 111 3 777 0 5555 88888888888 0 8 8 6 0 8 11 8 8 3 222 3 6 3 5 88 22 5 111 5 1 5 5 5 5 66666 1 1 5 5 1 5 5 5 1 1 5 1 5 5 555555555 111 1 5 5 4444 1 1 999999 5 5 5 5 5 5 88 1 5 22 5 5 88 88 0 88 3 3 666 3 3 7 00 7 88 6 0 3 3 3 6 3 6 7 88 2 8 8 3 6 555 1 44 6 6 99 66666 6 6 44 6 6 1 7 99 99 99 000 6 6 1 6 1 99 5 7 6 6 6 55 3 0 5 2 222 3 3 7 6 6 6 6 111 99 99999999999999999 8 4444444444444444444444444444444 444 5555 999999 6 99 666 6 6 33333 4444 0 77 777 6 888 999 5 5 77 0000 00000000 000 7 5 1 55555555555 33333 77 77 7777777777 1 7 6 6 3 99 6 8 8 11 3 3 3 3 6 33333 3 88 333 3 3 777777777777 7 3 6 7 3 3 8888888 00000000000000000 1 000 000
lowQualScore : .. .................... . ... . . ..... ... . . .. . .. . . ... . . ............. . . .. ...... . . .... ....... . . . . . .. . . .. . . .... ... .. . .. ................. . ... ................. . . . . . .. . . . . . . . . . . . . . . .. . ... . ..... . . ... . ... . .... ........... . . . . . . .. . . . ... . . . . .. .. . ... . . . . . . ..... . . . . . . . . . . . . . . ......... ... . . . .... . . ...... . . . . . . .. . . .. . . .. .. . .. . . ... . . . .. . .. . . . . . . . . . .. . . . . . ... . .. . . .. ..... . . .. . . . . .. .. .. ... . . . . . .. . . . . . .. . . . . ... . . . . . . . ... .. ................. . ............................... ... .... ...... . .. ... . . ..... .... . .. ... . ... ... . . .. .... ........ ... . . . ........... ..... .. .. .......... . . . . . .. . . . .. . . . . . ..... . .. ... . . ............ . . . . . . ....... ................. . ... ...
lowQualScore : 88 22222222222222222222 8 888 0 0 44444 444 0 2 00 8 44 8 8 888 7 5 2222222222222 7 0 22 888888 0 0 0000 0000000 0 3 3 0 7 00 3 7 33 7 7 7777 777 77 7 00 00000000000000000 3 333 77777777777777777 3 3 7 3 3 00 3 3 3 7 3 3 3 0 0 0 2 0 0 8 88 8 555 0 00000 2 5 222 2 555 2 5555 22222222222 0 0 0 0 8 0 00 0 0 2 000 2 7 3 0 55 00 5 555 5 0 5 5 0 5 00000 0 0 5 0 0 5 5 0 0 0 5 0 5 0 555555555 000 0 5 0 0000 0 0 000000 0 5 5 0 5 0 55 0 0 00 0 5 55 55 0 33 7 3 777 3 3 3 00 3 33 7 7 3 3 3 7 3 7 3 33 5 0 0 8 7 777 3 33 7 7 22 77777 7 7 00 7 7 0 7 22 22 22 777 7 7 0 7 0 22 5 3 7 7 7 88 3 4 0 5 000 3 3 3 7 7 7 7 777 22 33333333333333333 0 2222222222222222222222222222222 000 4444 222222 7 22 888 7 7 55555 2222 6 99 333 7 777 111 7 4 99 1111 11111111 000 6 7 7 66666666666 11111 99 99 4444444444 0 8 7 7 7 22 7 0 0 44 3 7 3 3 7 33333 3 33 333 3 3 777777777777 3 3 7 3 3 3 0000000 00000000000000000 0 555 555
consensus : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGACAA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGAA--CATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACTTA--AT-----TA----TTT-TACACGGAA-GTA-TAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTCT-CAACT-ACAGAGAAGAG-C-ATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TAACACA--TCAAAGTCAACAT---CCA----TGTTAGGATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
Reference ( family-3152 ) : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-CCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGACAA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGAA--CATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACA---TAATCCGTCAAACA---ACTTA--AT-----TA----TTT-TACACGGAA-GTA-TA-GGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAG-AGAGAT--AACTCTTCAACT-ACAGAGAAGAG-CCATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACATA--AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TAACACA--TCAAAGTCAACAT---CCA----TGTTAGGATGACCTTG---ACCTGG-AGAGA--TG---ACGCAAA----GGTCAAGGA-C--AAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAACAAATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
gi|1 : CAGTAGACTATAGAGCGAGTCAAT-------T---TTGT----TACACGACTAATATTTT-GCCTCATTTTGGTTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAACG-ACCAATCCAGTATTGAGAGAGAGATCGAT-ATAGTCG-TCAGGTTGGAAGAAATATTCACGTGATAACAAGGCGGTACC----CGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCCTT--GGACCGACTTAA-TC-TATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGACAATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTA-AAGTAAGTGTACATGTATCACGAA--CATGA-TC---GGAAATATG-----ACGGGAAAAACATGGTTGTTACAAAATAATCCGTCAAACA---ACTTA--AT-----TA----TTG-TACACGAAA-GTA-TAAGGCAGTTAGGAATCATATAAATTG-ATTTATG-CGTATT-ACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAA-CTTCCTACATTGTTATACCCAGAATTTACA-CATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAAT-AAATAATGTTCCTTATATGGATAGTTAACAACCGTGT-GACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTA-CCAG-AAATAGGCCTGTGGGTGGGTTT-GGGTTTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAGGAAAAT---CTGGGGATCACAAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGCA-TA-ATTGTGCAAC--AGAAAGA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAA-ACAT---AGATGGCT-AAATTAATCTCGAATAT-TGCCAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAACA-GCATA-CTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCA-GCAAATGG-CAATC-CCCAAAC--TGCTAACACATTTCAAAGTCAACATTCCCTATATTTATTAGGATGACCTTGAACACCTGGCAGAGACCTGACCACACAAA----GGTCAAGGA-CCAAAGA---ACAT---CTCAAAGACGGTC-AAAG-AAATTCAATATCCATGATCCTTGACCCCTGGAGA-TGCAAAGGTCATAGGTCATAACCACTCAAACAAACAAATG-ACCTTGAAGCCTGGGGAGCGAA-AGCAGAGATCAAGG--CCCGTGAATGTTACCAAATTCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAA-GCC-------G-----------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGC
gi|10 : gTGAAAAAAAGAA-TTA-AT-------------GTAACCG--TT-GTGGCTGC-AGGTGTAACC-TAGGTAT-TTG---CCACAAGTAGGTATACATTGATCAAGAAGACATGGTTTTTAGGAATT-TGTTTTAAGAGGAAGGACTTAGGAGTTACG---TAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTT-TACAAAGAAAGTAACA-AGCAGT-AT-AATT-TACAAAT-GCATTTA-GC--TATTTACTTATTAGACAATTACAACTcc
gi|11 : cagacaatgattTTG-AATAT-T-ACTTAAAAA---TT-CTA-AAG--AAAT---A-GGGGTTCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAA-AGG--GTGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGGAATGA--CAACTTC-AAAGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCTT-ATGTG-TATATG-CATAACACAT---AGAT-GCT-AAATT
gi|12 : cTTC-GAC-TTTGAAAATTTG-AATAT-C-ACTTAAAA---ATT-CTA-AAG--AATT---A-GGGGATCAC-AAA-CCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTTA-TGATAA-CATCAA-GGAAGTA-ATGGTGGAACTAGGAAAGAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCTT-ATGTg
gi|13 : tAAA--TTT-GC-TCATTT-GGT-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGGATCAATC-AGAATTTAGAGGGAG--TAAT-AGAT-TG-TCAGGTTTAAACAAATAG-CACTTGATGA-AACG-GGTTCC----Ctgt
gi|14 : gttaattttttatccacgggtaaggtttgctcagtaAGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCGTTAAAA--TTT-AC-TCATTTT--TTTGAGAGGTAA-------------GCCCTATGGGA--GTGG-ACCAATCAGAAATAATGA--AGTGACAAAACGGACCAATC-AGAATTTAAAGAAATATC-------A-CG-T--------------TAT---------GA-AAGG-GGTACC----CGAGAGG---AT-AGTATCAAG-TTA
gi|15 : AATGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGCAGCACGAA--CATGAATC---GGAAAT-TG-----ACGGG-AAAACATGATT-TTACA---TAATCCGTCAAACATGCAATTG--AT-----TA----TTT-TACATGGAA-GTA-TA-GGCAGTTAG-AATC--ACAAAT-G-ATTT
gi|16 : CAAAA--TG-TA-CACA--TCAAAGTCAACAT---CCA----TGT-AGAATGATCTTG---ACCTAG-AAA---------ATGCAAA----TGTCAAGGA-C--AAGC---AAAT---T-CAAACAAGCTC-AAAC-AAATTCAAAAT--ATGA-CCTTGACCCTGG
gi|17 : CTCAG-TAT-TG-CAAA-CAAGA---CACAA-AAA--T--------------TTTTATTTGGC--T-------------GAC------------TA---AAGG--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCA-GAAA
gi|18 : TCAAATTGTGGGCTT-C--CTCA--CAAATGG-CAA-T-CCCAAAA--TG-TA-CAAA--TCAAAGTCAACAT---CCA----T-TTAGGGTGACTTTG---ACCCTG-GGA-----G---ACGCAAA----GGTCAA
gi|19 : CACAGAA-GTG-TA-AGTAGTTAG-AATC--ACAAAC-G-ATTTATGTCCTATTTA
gi|2 : AGTAG--TATAGAGCGAGTCAAT-------T-----GA----TACACGATTAAT--TTTTGC-TCATTT-GGT-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA--A--GGACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGTATTGAGAGAGA-AT-GAT-AAAG-TG-TCAGGTTGGAAGAAATAT-CACGTGATAA-AAGG-GGTACC----CGAGAG-T--AT-AGTGTCAAA-TTATTCTAATTAAAA-TTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATC-TTTTGGAC-GACTTAAATCCTATTCATC---GACACG-C-ATGT---ACAA-GTGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG--------CA-------AAAAA-GTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAAGTAAACTATTT-GTGACTGT-A-GTGTAACC-TAGGTATGTTAAC-CTA-CAGTAAGTGTACATGTATCACGAA--CATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT-A--AT-----TA----TTTATACACGGAA-GTA-TAAGGCAGTTAG-AATCATTAAAAT-G-ATTTATGTCGTACTTA--TG-GAGAAAATTCCAACTG-TAATGGAATAAAATTTTGCCAA-TCTCGCATGTTTTACACAGATTTTTTA---TCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTGT-CTGTAATATAT-TCTTGTG-CAA-TG-TATAAATATCTTGTATTT-GTTAGGTATTAT-AAG-AGGACTCGG---------TATAA---AGTGTAT-GCA-GAA----TATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGATAAA-GTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTGT-ATTACGAAA--TTTGA--AAAG-AGAGAT--AACTCT-CAACT-ACAGAGAAGAG-C-ATACATG-ACAATAAATAAAATAAT---CCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTT-GGG-TTTGAAAATTTG-AA-ATATTACTT---AAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTT-AT-GAGCG--AAAAGG--ATGATTGAATC--AGAGGCG--CTCAGTTTA---AT-A-TATCAAGGGCAGTA-ATTGTGCAACTAGGAAAGA--CAACTCC-AAAGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCTT-ATGTG-TATATGCtg
gi|21 : CAATAG--TATAGAGCGAGTCAA--------T---TTGA----TCCACGACTAA---TTT-GC-Ta
gi|22 : ATTA-TCTCAGATAT-TG-CAAA-CA-GA---CATAACCAA--T--------------T
gi|3 : cATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--T-------------GAC------------TA---AGGT---AC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----T-CAAATTGTGGGCT-GC--CTCA-G-AAATGG-CAAGC-CCCAAAC--TG-TA-CACA--TCAAAGTCAACAT---CCA----TTATAGGATGACCTTG---ACCCTG-GGAGA--TG------CAAA----GGTCAAGGA-C--AAGA---ACA----TTCAAAGAGGTTCAAAAG-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGATTGCAAAGGTCA-AGGTT-CAAACA-TCAAACAAAC-AATG-ACCATG-A-CCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAAT----CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAAC---TGCATGTGGTTTGC
gi|4 : tAGATATGTG-CAAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGAT-------------AACAGGGCACGGTGATA---AAGTGGTAC------TAA-A--ATACCAAA-AAGCATA-C-A--------AAAA----TTCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TACCACA--TCAAAGTCAGCAT---CCA----TGT-AGAATGATCT-G---ACCTAG-AAA---------ATGCAAAAATTGGTCAAGGAGC--AAGC----CAA---TTCAA-CAAGCTC-AAAC-AAATTCAAAAT--ATGA-ACTTGACCCTGGGAGA-TGCAAAGGTCA-AGGT--TCAACA-TCAATCAAAC-AATGAACCATG-AGCCTGG-----GAGTAGCAGAAATCAAGGTCCC---GAAT-TTA-CAA--TCA-----------TCAC--G-TTTT--AATGCAC-A-ACTAA-GCCGCTCATacc
gi|5 : tcagGAGAT--AACTCT-CAACT-ACAGAGAAGAG-C-ATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAA--TGAAATAG-TTACTT---AAAAATTCCTACAAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTA---AT-ATTATCAAGGGCAGTA-ATTGTGCAACTGGAAAAGA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCTTGATGTG-TATATG-CATAACAC
gi|6 : TGGATCAAGATGTATGC-CAAGGGAGCGGCCCTAAGGGA--ATGGA-CCAATCGGAAA---GG------GATAAAACGGACCGATC-AGAATGGAGA-AAAAAT-GATAAGAG-TA-TCATTTTGAAAG---TAT-CA
gi|6 : ttgccaGGAATGGACCAATC-GGAA---AGGGATAAAACG----GAC-CGATCAGAATGGAGAAAA---------AATGA-TAAG-AGTATCATTTTGAAAG---------TATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCC-TTTGGACCGACTTAA-TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTG--ATTGTTAA-TTTTGGTGaattattctaattaaaaattcccttacattggggcctctccgcgaagtatggaacagtcactaatcctttggaccgacttaatcctattatcaacacacggatgtacaagtgtatactgagctgtagtaatcaattaggaacgaatacatatgtagaagaaagtgattgttaattttggtg
gi|7 : ttgccatggatcaagatgtatgccaagggagcggccctaagAGATAT-TG-CAAG-CA-GA---AAGAA---A--T--------------GAT-ATTTGGT--TTCTATATCTTATTGGC------------TATAAAAGG--CACGGCTGATAA-AAAGTACCAAA-G-GCATA-C-AA----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCACACAAATGG-CAGGC-CCC---------CAATACA--TTATA-TCAATA------A--------GGGATGGCCTTG---ACCCAG-A-AGA--T------GTAAA----CGTCAAGGT-C--GAGA----------TTCAAACATG----AAAC-AA-------AC--ATTA-CCATGAGCCTGGGAGG-AGCAGAAATCA-AGACCG
gi|8 : GGTGGGTTTTGGG-TATGAAAACTTG-AATAT-T-ACTTCAAAA---TT-CTC-AAG--AAATATAC-GGG--TCAC-AAAACC-TTTCT-GTAGTTGTT-AT-ACGCAAAAA-AGG--ATGATTGAATC--AGAGGTG--TCAAATTTATT-AT-A-TATCAAGGGAAGTATTTTGTGGGACTGGAAATGA--CAACGCC-AAAGTGTTTGG-C-AATCATTCGGATAGGACAGCATCTTAATGTGTATTATGGCATAACACATAAGAGAT-GCTAAAATTAaatttacaagatcg
gi|9 : gt------TAACA--ATACCAAA-A-GCATAAC-A-----ACCAAAT----TTAAAACTGTAG---TGC--CTAA---AAATGG-AAAAC-ACCAAAA--TC-TAACACA--AAAAGGTCAAGAC---ACA----Tt
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagag--TA---ACACAAA--------AAGGT-C--AAGAC--ACATAAATTCAAACAACTTC-AAACCAAAATCAGTTT--ATAA-CCTTGACTCTCAGAGA-TGCAAAGATCA-AGGTCGaaattcaaacaacttcaaaccaaaatcagtttataaccttgactctcagagatgcaaagatcaaggtcgagattgacatcc
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagagtaacaataccaaaagcataacaaccaaatttaaaactgtagtgcctaaaaatggaaaacaccaaaatcATAACCTTG---ACTCTC-AGAGA--T------GCAAA----GATCAAGGT-C--GAGATTGACAT---agattgacatcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG
Alignments
lowQualScore : 11111111111111111
lowQualScore : 11 55555555555555555555 111 11111 111 1 11 11 111 2222222222222 111111 1111 4444444 1 11 1 3333 222 11 11 33333333333333333 222 77777777777777777 11 1 1 2222 1 22 1 1 1 1 11 111 1 22222 2222 22222222 22222222222 1 111 111 1 1 11 1 222 1 1 1 1 1 22222 1 1 222 1 1 1 1 333333333 222 11 1 2222 222222 1 1 1 1 1 1 11 1 1 1 11 11 1 11 1 1 11 1 1 111 11 1 1 1 2 1 11 111 1 11 11111 11 1 222 1 11 1 2 1 222 1 1 111 33333333333333333 6666666666666666666666666666666 111 1111 111111 22222 1111 1 222 55555555555555555 11111 1111111111 33333333 111 444444444444 11111 2222222222 11 1 1 1 1 33333 1 11 222 1 1 555555555555 1 1 1 44444444444444444 222 222
lowQualScore : 33 77777777777777777777 0 999 8 8 22222 222 8 3 11 3 44 0 0 111 6 2 8888888888888 6 1 44 333333 8 8 7777 2222222 0 7 7 1 0 44 7 6 3 6 6 1111 666 44 6 44 77777777777777777 7 333 99999999999999999 7 7 6 7 7 88 3 3 7 4444 7 3 00 0 0 3 0 0 0 33 9 777 0 55555 3 2 3333 3 55555555 88888888888 0 8 5 0 8 777 8 8 3 222 3 6 3 5 88 22 5 111 5 1 5 5 5 5 66666 1 1 5 5 1 111 5 1 1 5 1 5 5 555555555 111 66 5 4444 1 1 999999 5 5 5 5 5 5 88 1 5 22 5 5 88 88 5 88 3 3 88 3 3 7 999 7 88 6 0 3 3 3 6 3 6 7 88 2 8 8 3 6 555 1 44 6 6 99 66666 6 6 44 6 6 1 7 99 99 99 000 6 6 1 6 1 99 5 7 6 6 6 55 3 0 5 2 333 3 3 7 6 6 6 6 111 99 99999999999999999 8 4444444444444444444444444444444 444 5555 999999 6 99 666 6 6 33333 4444 0 77 777 6 888 999 5 33333333333333333 77 44444 4 5555555555 11111111 77 000 1 5 1 222222222222 33333 66 999 7777777777 1 7 6 6 3 99 6 8 8 11 3 3 3 3 6 33333 3 88 333 3 3 777777777777 7 3 6 7 3 3 8888888 00000000000000000 1 000 000
lowQualScore : .. .................... . ... . . ..... ... . . .. . .. . . ... . . ............. . . .. ...... . . .... ....... . . . . . .. . . . . . .... ... .. . .. ................. . ... ................. . . . . . .. . . . .... . . .. . . . . . . .. . ... . ..... . . .... . ........ ........... . . . . . ... . . . ... . . . . .. .. . ... . . . . . . ..... . . . . . ... . . . . . . . ......... ... .. . .... . . ...... . . . . . . .. . . .. . . .. .. . .. . . .. . . . ... . .. . . . . . . . . . .. . . . . . ... . .. . . .. ..... . . .. . . . . .. .. .. ... . . . . . .. . . . . . .. . . . . ... . . . . . . . ... .. ................. . ............................... ... .... ...... . .. ... . . ..... .... . .. ... . ... ... . ................. .. ..... . .......... ........ .. ... . . . ............ ..... .. ... .......... . . . . . .. . . . .. . . . . . ..... . .. ... . . ............ . . . . . . ....... ................. . ... ...
lowQualScore : 88 22222222222222222222 8 888 0 0 44444 444 0 2 00 8 44 8 8 888 7 5 2222222222222 7 0 22 888888 0 0 0000 0000000 0 3 3 0 7 00 3 7 3 7 7 7777 777 77 7 00 00000000000000000 3 333 77777777777777777 3 3 7 3 3 00 3 3 3 7777 3 3 77 0 0 2 0 0 8 88 8 555 0 00000 2 5 2222 2 88888888 22222222222 0 0 6 8 0 222 0 0 2 000 2 7 3 0 55 00 5 555 5 0 5 5 0 5 00000 0 0 5 0 0 000 0 0 0 5 0 5 0 555555555 000 55 0 0000 0 0 000000 0 5 5 0 5 0 55 0 0 00 0 5 55 55 5 33 3 3 33 3 3 3 000 3 33 7 7 3 3 3 7 3 7 3 33 5 0 0 8 7 777 3 33 7 7 22 77777 7 7 00 7 7 0 7 22 22 22 777 7 7 0 7 0 22 5 3 7 7 7 88 3 4 0 5 333 3 3 3 7 7 7 7 777 22 33333333333333333 0 2222222222222222222222222222222 000 4444 222222 7 22 888 7 7 55555 2222 6 99 333 7 777 111 7 33333333333333333 99 33333 3 4444444444 44444444 99 000 0 7 7 777777777777 11111 77 333 4444444444 0 8 7 7 7 22 7 0 0 44 3 3 3 3 7 33333 3 33 333 3 3 777777777777 3 3 7 3 3 3 0000000 00000000000000000 0 555 555
consensus : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TA----------------ACACA--T-----CAAAGTCAAC-----AT---CCA----TGTTAGG--ATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
Reference ( family-3152 ) : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TA----------------ACACA--T-----CAAAGTCAAC-----AT---CCA----TGTTAGG--ATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
gi|1 : CAGTAGACTATAGAGCGAGTCAAT-------T---TTGT----TACACGACTAATATTTT-GCCTCATTTTGGTTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAACG-ACCAATCCAGTATTGAGAGAGAGATCGAT-ATAGTCG-TCAGGTTGGAAGAAATATTCACGTGATAACAAGGCGGTACC----CGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCCTT--GGACCGACTTAA-TC-TATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGAC-AATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTA-AAGTAAGTGTACATGTATCACGA--ACATGA-TC---GGAAATATG-----ACGGGAAAAACATGGTTGTTACAAAATAATCCGTCAAACA---ACT--TAAT-----TA----TTG-TAC-ACGAAAGTATAAGGCAGTTAGGAATCATATAAATTG-ATTTATG-CGTATT-ACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAA-CTTCCTACATTGTTATACCCAGAATTTACA-CATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAAT-AAATAATGTTCCTTATATGGATAGTTAACAACCGTGT-GACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTA-CCAG-AAATAGGCCTGTGGGTGGGTTT-GGGTTTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAGGAAAAT---CTGGGGATCACAAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGCA-TA-ATTGTGCAAC--AGAAAGA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAA-ACAT---AGATGGCT-AAATTAATCTCGAATAT-TGCCAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAACA-GCATA-CTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCA-GCAAATGG-CAATC-CCCAAAC--TGCTA----------------ACACATTT-----CAAAGTCAAC-----ATTCCCTATATTTATTAGG--ATGACCTTGAACACCTGGCAGAGACCTGACCACACAAA----GGTCAAGGA-CCAAAGA---ACAT---CTCAAAGACGGTC-AAAG-AAATTCAATATCCATGATCCTTGACCCCTGGAGA-TGCAAAGGTCATAGGTCATAACCACTCAAACAAACAAATG-ACCTTGAAGCCTGGGGAGCGAA-AGCAGAGATCAAGG--CCCGTGAATGTTACCAAATTCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAA-GCC-------G-----------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGC
gi|10 : gTGAAAAAAAGAA-TTA-AT--------------GTAACCG--TT-GTGGCTGC-AGGTGTAACC-TAGGTAT-TTG---CCACAAGTAGGTATACATTGATCAAGAAGACATGGTTTTTAGGAATT-TGTTTTAAGAGGAAGGACTTAGGAGTTAC--G-TAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTT-TACAAAGAAAGTAACAAGCAG-TAT-AATT-TACAAAT-GCATTTA-GC--TATTTACTTATTAGACAATTACAACTcc
gi|11 : cagacaatgattTTG-AATAT-T-ACTTAAAAA---TT-CTA-AAG--AAAT---A-GGGGTTCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAA-AGG--GTGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGGAATGA--CAACTTC-AAAGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCTT-ATGTG-TATATG-CATAACACAT---AGAT-GCT-AAATT
gi|12 : cTTC-GAC-TTTGAAAATTTG-AATAT-C-ACTTAAAA---ATT-CTA-AAG--AATT---A-GGGGATCAC-AAA-CCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTTA-TGATAA-CATCAA-GGAAGTA-ATGGTGGAACTAGGAAAGAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCTT-ATGTg
gi|13 : tAAA--TTT-GC-TCATTT-GGT-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGGATCAATC-AGAATTTAGAGGGAG--TAAT-AGAT-TG-TCAGGTTTAAACAAATAG-CACTTGATGA-AACG-GGTTCC----Ctgt
gi|14 : gttaattttttatccacgggtaaggtttgctcagtaAGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCGTTAAAA--TTT-AC-TCATTTT--TTTGAGAGGTAA-------------GCCCTATGGGA--GTGG-ACCAATCAGAAATAATGA--AGTGACAAAACGGACCAATC-AGAATTTAAAGAAATATC-------A-CG-T--------------TAT---------GA-AAGG-GGTACC----CGAGAGG---AT-AGTATCAAG-TTA
gi|15 : AATGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGCAGCACGA--ACATGAATC---GGAAAT-TG-----ACGGG-AAAACATGATT-TTAC--A-TAATCCGTCAAACATGCAAT--TGAT-----TA----TTT-TAC-ATGGAAGTAT-AGGCAGTTAG-AATC--ACAAAT-G-ATTT
gi|16 : CAAAA--TG-TA-----------------CACA--T-----CAAAGTCAAC-----AT---CCA----TGT-AGA--ATGATCTTG---ACCTAG-AAA---------ATGCAAA----TGTCAAGGA-C--AAGC---AAAT---T-CAAACAAGCTC-AAAC-AAATTCAAAAT--ATGA-CCTTGACCCTGG
gi|17 : CTCAG-TAT-TG-CAAA-CAAGA---CACAA-AAA--T--------------TTTTATTTGGC--T-------------GAC------------TA---AAGG--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCA-GAAA
gi|18 : TCAAATTGTGGGCTT-C--CTCA--CAAATGG-CAA-T-CCCAAAA--TG-TA-----------------CAAA--T-----CAAAGTCAAC-----AT---CCA----T-TTAGG--GTGACTTTG---ACCCTG-GGA-----G---ACGCAAA----GGTCAA
gi|19 : C-ACAGAAGTGTAAG-TAGTTAG-AATCA--CAAAC-G-ATTTATGTCCTATTTA
gi|2 : AGTAG--TATAGAGCGAGTCAAT-------T-----GA----TACACGATTAAT--TTTTGC-TCATTT-GGT-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA--A--GGACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGTATTGAGAGAGA-AT-GAT-AAAG-TG-TCAGGTTGGAAGAAATAT-CACGTGATAA-AAGG-GGTACC----CGAGAG-T--AT-AGTGTCAAA-TTATTCTAATTAAAA-TTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATC-TTTTGGAC-GACTTAAATCCTATTCATC---GACACG-C-ATGT---ACAA-GTGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG--------CA-------AAAAA-GTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAA-GTAAACTATTT-GTGACTGT--AGTGTAACC-TAGGTATGTTAAC-CTA-CAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---AC---TAAT-----TA----TTTATAC-ACGGAAGTATAAGGCAGTTAG-AATCATTAAAAT-G-ATTTATGTCGTACTTA--TG-GAGAAAATTCCAACT-GTAATGGAATAAAATTTTGCC-AATCTCGCATGTTTTACACAGATTTTTT---ATCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTG-TCTGTAATATAT-TCTTGTG-C-AATG-TATAAATATCTTGTA-TTTGTTAGGTATTA-TAAG-AGGACTCGG---------TAT---AAAGTGTA-TGCA-GA----ATATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGAT-AAAGTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTG-TATTACGAAA--TTTGA--AAAG-AGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATACATG-ACAATAAATAAAATAA---TCCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTT-GGG-TTTGAAAATTTG-AA-ATATTACTT---AAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTT-AT-GAGCG--AAAAGG--ATGATTGAATC--AGAGGCG--CTCAGTTTA---AT-A-TATCAAGGGCAGTA-ATTGTGCAACTAGGAAAGA--CAACTCC-AAAGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCTT-ATGTG-TATATGCtg
gi|21 : CAATAG--TATAGAGCGAGTCAA--------T---TTGA----TCCACGACTAA---TTT-GC-Ta
gi|22 : ATTA-TCTCAGATAT-TG-CAAA-CA-GA---CATAACCAA--T--------------T
gi|3 : cATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--T-------------GAC------------TA---AGGT---AC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----T-CAAATTGTGGGCT-GC--CTCA-G-AAATGG-CAAGC-CCCAAAC--TG-TA-----------------CACA--T-----CAAAGTCAAC-----AT---CCA----TTATAGG--ATGACCTTG---ACCCTG-GGAGA--TG------CAAA----GGTCAAGGA-C--AAGA---ACA----TTCAAAGAGGTTCAAAAG-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGATTGCAAAGGTCA-AGGTT-CAAACA-TCAAACAAAC-AATG-ACCATG-A-CCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAAT----CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAAC---TGCATGTGGTTTGC
gi|4 : tAGATATGTG-CAAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGAT-------------AACAGGGCACGGTGATA---AAGTGGTAC------TAA-A--ATACCAAA-AAGCATA-C-A--------AAAA----TTCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TA----------------CCACA--T-----CAAAGTCAGC-----AT---CCA----TGT-AGA--ATGATCT-G---ACCTAG-AAA---------ATGCAAAAATTGGTCAAGGAGC--AAGC----CAA---TTCAA-CAAGCTC-AAAC-AAATTCAAAAT--ATGA-ACTTGACCCTGGGAGA-TGCAAAGGTCA-AGGT--TCAACA-TCAATCAAAC-AATGAACCATG-AGCCTGG-----GAGTAGCAGAAATCAAGGTCCC---GAAT-TTA-CAA--TCA-----------TCAC--G-TTTT--AATGCAC-A-ACTAA-GCCGCTCATacc
gi|5 : tcagGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAA--TGAAATAG-TTACTT---AAAAATTCCTACAAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTA---AT-ATTATCAAGGGCAGTA-ATTGTGCAACTGGAAAAGA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCTTGATGTG-TATATG-CATAACAC
gi|6 : TGGATCAAGATGTATGC-CAAGGGAGCGGCCCTAAGGGA--ATGGA-CCAATCGGAAA---GG------GATAAAACGGACCGATC-AGAATGGAGA-AAAAAT-GATAAGAG-TA-TCATTTTGAAAG---TAT-CA
gi|6 : ttgccaGGAATGGACCAATC-GGAA---AGGGATAAAACG----GAC-CGATCAGAATGGAGAAAA---------AATGA-TAAG-AGTATCATTTTGAAAG---------TATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCC-TTTGGACCGACTTAA-TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTG--ATTGTTAA-TTTTGGTGaattattctaattaaaaattcccttacattggggcctctccgcgaagtatggaacagtcactaatcctttggaccgacttaatcctattatcaacacacggatgtacaagtgtatactgagctgtagtaatcaattaggaacgaatacatatgtagaagaaagtgattgttaattttggtg
gi|7 : ttgccatggatcaagatgtatgccaagggagcggccctaagAGATAT-TG-CAAG-CA-GA---AAGAA---A--T--------------GAT-ATTTGGT--TTCTATATCTTATTGGC------------TATAAAAGG--CACGGCTGATAA-AAAGTACCAAA-G-GCATA-C-AA----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCACACAAATGG-CAGGC-CCC---------CA----------------ATACA--T-----TATA-TCAAT-----A------A--------GGG--ATGGCCTTG---ACCCAG-A-AGA--T------GTAAA----CGTCAAGGT-C--GAGA----------TTCAAACATG----AAAC-AA-------AC--ATTA-CCATGAGCCTGGGAGG-AGCAGAAATCA-AGACCG
gi|8 : GGTGGGTTTTGGG-TATGAAAACTTG-AATAT-T-ACTTCAAAA---TT-CTC-AAG--AAATATAC-GGG--TCAC-AAAACC-TTTCT-GTAGTTGTT-AT-ACGCAAAAA-AGG--ATGATTGAATC--AGAGGTG--TCAAATTTATT-AT-A-TATCAAGGGAAGTATTTTGTGGGACTGGAAATGA--CAACGCC-AAAGTGTTTGG-C-AATCATTCGGATAGGACAGCATCTTAATGTGTATTATGGCATAACACATAAGAGAT-GCTAAAATTAaatttacaagatcg
gi|9 : gt------TAACA--ATACCAAA-A-GCATAAC-A-----ACCAAAT----TTAAAACTGTAG---TGC--CTAA---AAATGG-AAAAC-ACCAAAA--TC-TAACACAAAAAGGTCAAGACACA--TAAATTCAAA--CAACTTCAAAC---CAA----AATCAGTTTATAACCTTG---ACTCTC-AGAGA--TG------CAAA----GATCAAGGT-C--GAGATTGACAT---t
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagag--TA---ACACAAA--------AAGGT-C--AAGAC--ACATAAATTCAAACAACTTC-AAACCAAAATCAGTTT--ATAA-CCTTGACTCTCAGAGA-TGCAAAGATCA-AGGTCGcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG
Alignments
lowQualScore : 11111111111111111
lowQualScore : 11 55555555555555555555 111 11111 111 1 11 11 111 2222222222222 111111 1111 4444444 1 11 1 3333 222 11 11 33333333333333333 222 77777777777777777 11 1 1 2222 1 22 1 1 1 1 11 111 1 22222 2222 22222222 22222222222 1 111 111 1 1 11 1 222 1 1 1 1 1 22222 1 1 222 1 1 1 1 333333333 222 11 1 2222 222222 1 1 1 1 1 1 11 1 1 1 11 11 1 11 1 1 11 1 1 111 11 1 1 1 2 1 11 111 1 11 11111 11 1 222 1 11 1 2 1 222 1 1 111 33333333333333333 6666666666666666666666666666666 111 1111 111111 22222 1111 1 222 55555555555555555 11111 1111111111 33333333 111 444444444444 11111 2222222222 11 1 1 1 1 33333 1 11 222 1 1 555555555555 1 1 1 44444444444444444 222 222
lowQualScore : 33 77777777777777777777 0 999 8 8 22222 222 8 3 11 3 44 0 0 111 6 2 8888888888888 6 1 44 333333 8 8 7777 2222222 0 7 7 1 0 44 7 6 3 6 6 1111 666 44 6 44 77777777777777777 7 333 99999999999999999 7 7 6 7 7 88 3 3 7 4444 7 3 00 0 0 3 0 0 0 33 9 777 0 55555 3 2 3333 3 55555555 88888888888 0 8 5 0 8 777 8 8 3 222 3 6 3 5 88 22 5 111 5 1 5 5 5 5 66666 1 1 5 5 1 111 5 1 1 5 1 5 5 555555555 111 66 5 4444 1 1 999999 5 5 5 5 5 5 88 1 5 22 5 5 88 88 5 88 3 3 88 3 3 7 999 7 88 6 0 3 3 3 6 3 6 7 88 2 8 8 3 6 555 1 44 6 6 99 66666 6 6 44 6 6 1 7 99 99 99 000 6 6 1 6 1 99 5 7 6 6 6 55 3 0 5 2 333 3 3 7 6 6 6 6 111 99 99999999999999999 8 4444444444444444444444444444444 444 5555 999999 6 99 666 6 6 33333 4444 0 77 777 6 888 999 5 33333333333333333 77 44444 4 5555555555 11111111 77 000 1 5 1 222222222222 33333 66 999 7777777777 1 7 6 6 3 99 6 8 8 11 3 3 3 3 6 33333 3 88 333 3 3 777777777777 7 3 6 7 3 3 8888888 00000000000000000 1 000 000
lowQualScore : .. .................... . ... . . ..... ... . . .. . .. . . ... . . ............. . . .. ...... . . .... ....... . . . . . .. . . . . . .... ... .. . .. ................. . ... ................. . . . . . .. . . . .... . . .. . . . . . . .. . ... . ..... . . .... . ........ ........... . . . . . ... . . . ... . . . . .. .. . ... . . . . . . ..... . . . . . ... . . . . . . . ......... ... .. . .... . . ...... . . . . . . .. . . .. . . .. .. . .. . . .. . . . ... . .. . . . . . . . . . .. . . . . . ... . .. . . .. ..... . . .. . . . . .. .. .. ... . . . . . .. . . . . . .. . . . . ... . . . . . . . ... .. ................. . ............................... ... .... ...... . .. ... . . ..... .... . .. ... . ... ... . ................. .. ..... . .......... ........ .. ... . . . ............ ..... .. ... .......... . . . . . .. . . . .. . . . . . ..... . .. ... . . ............ . . . . . . ....... ................. . ... ...
lowQualScore : 88 22222222222222222222 8 888 0 0 44444 444 0 2 00 8 44 8 8 888 7 5 2222222222222 7 0 22 888888 0 0 0000 0000000 0 3 3 0 7 00 3 7 3 7 7 7777 777 77 7 00 00000000000000000 3 333 77777777777777777 3 3 7 3 3 00 3 3 3 7777 3 3 77 0 0 2 0 0 8 88 8 555 0 00000 2 5 2222 2 88888888 22222222222 0 0 6 8 0 222 0 0 2 000 2 7 3 0 55 00 5 555 5 0 5 5 0 5 00000 0 0 5 0 0 000 0 0 0 5 0 5 0 555555555 000 55 0 0000 0 0 000000 0 5 5 0 5 0 55 0 0 00 0 5 55 55 5 33 3 3 33 3 3 3 000 3 33 7 7 3 3 3 7 3 7 3 33 5 0 0 8 7 777 3 33 7 7 22 77777 7 7 00 7 7 0 7 22 22 22 777 7 7 0 7 0 22 5 3 7 7 7 88 3 4 0 5 333 3 3 3 7 7 7 7 777 22 33333333333333333 0 2222222222222222222222222222222 000 4444 222222 7 22 888 7 7 55555 2222 6 99 333 7 777 111 7 33333333333333333 99 33333 3 4444444444 44444444 99 000 0 7 7 777777777777 11111 77 333 4444444444 0 8 7 7 7 22 7 0 0 44 3 3 3 3 7 33333 3 33 333 3 3 777777777777 3 3 7 3 3 3 0000000 00000000000000000 0 555 555
consensus : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TA----------------ACACA--T-----CAAAGTCAAC-----AT---CCA----TGTTAGG--ATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
Reference ( family-3152 ) : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TA----------------ACACA--T-----CAAAGTCAAC-----AT---CCA----TGTTAGG--ATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
gi|1 : CAGTAGACTATAGAGCGAGTCAAT-------T---TTGT----TACACGACTAATATTTT-GCCTCATTTTGGTTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAACG-ACCAATCCAGTATTGAGAGAGAGATCGAT-ATAGTCG-TCAGGTTGGAAGAAATATTCACGTGATAACAAGGCGGTACC----CGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCCTT--GGACCGACTTAA-TC-TATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGAC-AATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTA-AAGTAAGTGTACATGTATCACGA--ACATGA-TC---GGAAATATG-----ACGGGAAAAACATGGTTGTTACAAAATAATCCGTCAAACA---ACT--TAAT-----TA----TTG-TAC-ACGAAAGTATAAGGCAGTTAGGAATCATATAAATTG-ATTTATG-CGTATT-ACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAA-CTTCCTACATTGTTATACCCAGAATTTACA-CATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAAT-AAATAATGTTCCTTATATGGATAGTTAACAACCGTGT-GACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTA-CCAG-AAATAGGCCTGTGGGTGGGTTT-GGGTTTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAGGAAAAT---CTGGGGATCACAAAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGCA-TA-ATTGTGCAAC--AGAAAGA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAA-ACAT---AGATGGCT-AAATTAATCTCGAATAT-TGCCAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAACA-GCATA-CTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCA-GCAAATGG-CAATC-CCCAAAC--TGCTA----------------ACACATTT-----CAAAGTCAAC-----ATTCCCTATATTTATTAGG--ATGACCTTGAACACCTGGCAGAGACCTGACCACACAAA----GGTCAAGGA-CCAAAGA---ACAT---CTCAAAGACGGTC-AAAG-AAATTCAATATCCATGATCCTTGACCCCTGGAGA-TGCAAAGGTCATAGGTCATAACCACTCAAACAAACAAATG-ACCTTGAAGCCTGGGGAGCGAA-AGCAGAGATCAAGG--CCCGTGAATGTTACCAAATTCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAA-GCC-------G-----------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGC
gi|10 : gTGAAAAAAAGAA-TTA-AT--------------GTAACCG--TT-GTGGCTGC-AGGTGTAACC-TAGGTAT-TTG---CCACAAGTAGGTATACATTGATCAAGAAGACATGGTTTTTAGGAATT-TGTTTTAAGAGGAAGGACTTAGGAGTTAC--G-TAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTT-TACAAAGAAAGTAACAAGCAG-TAT-AATT-TACAAAT-GCATTTA-GC--TATTTACTTATTAGACAATTACAACTcc
gi|11 : cagacaatgattTTG-AATAT-T-ACTTAAAAA---TT-CTA-AAG--AAAT---A-GGGGTTCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAA-AGG--GTGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGGAATGA--CAACTTC-AAAGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCTT-ATGTG-TATATG-CATAACACAT---AGAT-GCT-AAATT
gi|12 : cTTC-GAC-TTTGAAAATTTG-AATAT-C-ACTTAAAA---ATT-CTA-AAG--AATT---A-GGGGATCAC-AAA-CCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTTA-TGATAA-CATCAA-GGAAGTA-ATGGTGGAACTAGGAAAGAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCTT-ATGTg
gi|13 : tAAA--TTT-GC-TCATTT-GGT-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGGATCAATC-AGAATTTAGAGGGAG--TAAT-AGAT-TG-TCAGGTTTAAACAAATAG-CACTTGATGA-AACG-GGTTCC----Ctgt
gi|14 : gttaattttttatccacgggtaaggtttgctcagtaAGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCGTTAAAA--TTT-AC-TCATTTT--TTTGAGAGGTAA-------------GCCCTATGGGA--GTGG-ACCAATCAGAAATAATGA--AGTGACAAAACGGACCAATC-AGAATTTAAAGAAATATC-------A-CG-T--------------TAT---------GA-AAGG-GGTACC----CGAGAGG---AT-AGTATCAAG-TTA
gi|15 : AATGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGCAGCACGA--ACATGAATC---GGAAAT-TG-----ACGGG-AAAACATGATT-TTAC--A-TAATCCGTCAAACATGCAAT--TGAT-----TA----TTT-TAC-ATGGAAGTAT-AGGCAGTTAG-AATC--ACAAAT-G-ATTT
gi|16 : CAAAA--TG-TA-----------------CACA--T-----CAAAGTCAAC-----AT---CCA----TGT-AGA--ATGATCTTG---ACCTAG-AAA---------ATGCAAA----TGTCAAGGA-C--AAGC---AAAT---T-CAAACAAGCTC-AAAC-AAATTCAAAAT--ATGA-CCTTGACCCTGG
gi|17 : CTCAG-TAT-TG-CAAA-CAAGA---CACAA-AAA--T--------------TTTTATTTGGC--T-------------GAC------------TA---AAGG--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCA-GAAA
gi|18 : TCAAATTGTGGGCTT-C--CTCA--CAAATGG-CAA-T-CCCAAAA--TG-TA-----------------CAAA--T-----CAAAGTCAAC-----AT---CCA----T-TTAGG--GTGACTTTG---ACCCTG-GGA-----G---ACGCAAA----GGTCAA
gi|19 : C-ACAGAAGTGTAAG-TAGTTAG-AATCA--CAAAC-G-ATTTATGTCCTATTTA
gi|2 : AGTAG--TATAGAGCGAGTCAAT-------T-----GA----TACACGATTAAT--TTTTGC-TCATTT-GGT-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA--A--GGACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGTATTGAGAGAGA-AT-GAT-AAAG-TG-TCAGGTTGGAAGAAATAT-CACGTGATAA-AAGG-GGTACC----CGAGAG-T--AT-AGTGTCAAA-TTATTCTAATTAAAA-TTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATC-TTTTGGAC-GACTTAAATCCTATTCATC---GACACG-C-ATGT---ACAA-GTGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG--------CA-------AAAAA-GTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAA-GTAAACTATTT-GTGACTGT--AGTGTAACC-TAGGTATGTTAAC-CTA-CAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---AC---TAAT-----TA----TTTATAC-ACGGAAGTATAAGGCAGTTAG-AATCATTAAAAT-G-ATTTATGTCGTACTTA--TG-GAGAAAATTCCAACT-GTAATGGAATAAAATTTTGCC-AATCTCGCATGTTTTACACAGATTTTTT---ATCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTG-TCTGTAATATAT-TCTTGTG-C-AATG-TATAAATATCTTGTA-TTTGTTAGGTATTA-TAAG-AGGACTCGG---------TAT---AAAGTGTA-TGCA-GA----ATATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGAT-AAAGTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTG-TATTACGAAA--TTTGA--AAAG-AGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATACATG-ACAATAAATAAAATAA---TCCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTT-GGG-TTTGAAAATTTG-AA-ATATTACTT---AAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTT-AT-GAGCG--AAAAGG--ATGATTGAATC--AGAGGCG--CTCAGTTTA---AT-A-TATCAAGGGCAGTA-ATTGTGCAACTAGGAAAGA--CAACTCC-AAAGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCTT-ATGTG-TATATGCtg
gi|21 : CAATAG--TATAGAGCGAGTCAA--------T---TTGA----TCCACGACTAA---TTT-GC-Ta
gi|22 : ATTA-TCTCAGATAT-TG-CAAA-CA-GA---CATAACCAA--T--------------T
gi|3 : cATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--T-------------GAC------------TA---AGGT---AC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----T-CAAATTGTGGGCT-GC--CTCA-G-AAATGG-CAAGC-CCCAAAC--TG-TA-----------------CACA--T-----CAAAGTCAAC-----AT---CCA----TTATAGG--ATGACCTTG---ACCCTG-GGAGA--TG------CAAA----GGTCAAGGA-C--AAGA---ACA----TTCAAAGAGGTTCAAAAG-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGATTGCAAAGGTCA-AGGTT-CAAACA-TCAAACAAAC-AATG-ACCATG-A-CCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAAT----CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAAC---TGCATGTGGTTTGC
gi|4 : tAGATATGTG-CAAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGAT-------------AACAGGGCACGGTGATA---AAGTGGTAC------TAA-A--ATACCAAA-AAGCATA-C-A--------AAAA----TTCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TA----------------CCACA--T-----CAAAGTCAGC-----AT---CCA----TGT-AGA--ATGATCT-G---ACCTAG-AAA---------ATGCAAAAATTGGTCAAGGAGC--AAGC----CAA---TTCAA-CAAGCTC-AAAC-AAATTCAAAAT--ATGA-ACTTGACCCTGGGAGA-TGCAAAGGTCA-AGGT--TCAACA-TCAATCAAAC-AATGAACCATG-AGCCTGG-----GAGTAGCAGAAATCAAGGTCCC---GAAT-TTA-CAA--TCA-----------TCAC--G-TTTT--AATGCAC-A-ACTAA-GCCGCTCATacc
gi|5 : tcagGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAA--TGAAATAG-TTACTT---AAAAATTCCTACAAG--AAAT---C-GGGGATCAC-AAA-CC--TTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTA---AT-ATTATCAAGGGCAGTA-ATTGTGCAACTGGAAAAGA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCTTGATGTG-TATATG-CATAACAC
gi|6 : TGGATCAAGATGTATGC-CAAGGGAGCGGCCCTAAGGGA--ATGGA-CCAATCGGAAA---GG------GATAAAACGGACCGATC-AGAATGGAGA-AAAAAT-GATAAGAG-TA-TCATTTTGAAAG---TAT-CA
gi|6 : ttgccaGGAATGGACCAATC-GGAA---AGGGATAAAACG----GAC-CGATCAGAATGGAGAAAA---------AATGA-TAAG-AGTATCATTTTGAAAG---------TATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCC-TTTGGACCGACTTAA-TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTG--ATTGTTAA-TTTTGGTGaattattctaattaaaaattcccttacattggggcctctccgcgaagtatggaacagtcactaatcctttggaccgacttaatcctattatcaacacacggatgtacaagtgtatactgagctgtagtaatcaattaggaacgaatacatatgtagaagaaagtgattgttaattttggtg
gi|7 : ttgccatggatcaagatgtatgccaagggagcggccctaagAGATAT-TG-CAAG-CA-GA---AAGAA---A--T--------------GAT-ATTTGGT--TTCTATATCTTATTGGC------------TATAAAAGG--CACGGCTGATAA-AAAGTACCAAA-G-GCATA-C-AA----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCACACAAATGG-CAGGC-CCC---------CA----------------ATACA--T-----TATA-TCAAT-----A------A--------GGG--ATGGCCTTG---ACCCAG-A-AGA--T------GTAAA----CGTCAAGGT-C--GAGA----------TTCAAACATG----AAAC-AA-------AC--ATTA-CCATGAGCCTGGGAGG-AGCAGAAATCA-AGACCG
gi|8 : GGTGGGTTTTGGG-TATGAAAACTTG-AATAT-T-ACTTCAAAA---TT-CTC-AAG--AAATATAC-GGG--TCAC-AAAACC-TTTCT-GTAGTTGTT-AT-ACGCAAAAA-AGG--ATGATTGAATC--AGAGGTG--TCAAATTTATT-AT-A-TATCAAGGGAAGTATTTTGTGGGACTGGAAATGA--CAACGCC-AAAGTGTTTGG-C-AATCATTCGGATAGGACAGCATCTTAATGTGTATTATGGCATAACACATAAGAGAT-GCTAAAATTAaatttacaagatcg
gi|9 : gt------TAACA--ATACCAAA-A-GCATAAC-A-----ACCAAAT----TTAAAACTGTAG---TGC--CTAA---AAATGG-AAAAC-ACCAAAA--TC-TAACACAAAAAGGTCAAGACACA--TAAATTCAAA--CAACTTCAAAC---CAA----AATCAGTTTATAACCTTG---ACTCTC-AGAGA--TG------CAAA----GATCAAGGT-C--GAGATTGACAT---t
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagag--TA---ACACAAA--------AAGGT-C--AAGAC--ACATAAATTCAAACAACTTC-AAACCAAAATCAGTTT--ATAA-CCTTGACTCTCAGAGA-TGCAAAGATCA-AGGTCGcc
blockSeqs : . TATAATCATGGGTTAAGGTT A T . TGGAT CCA A A . T GA A . T AATGATAAGAG A G CA CACTT . . ATTT GAT . A T T T T C A C C AAC C T C TG TTTTGAGCTATT T . AACGAATACATATGTAG A A G T T . . G A AAA A . A . G A . C AG T TTA . TTTTA A G AAA T TGCAAT CCGAGTAGTCT A A C . ATT . C T TCC T C T . AT TG . . A T A . . T . G G . . T C . A A . T . . . . A . . A T . . T . . . . . T C CA . . . . . . . . . C . A TG A . G . . . A . C A . G T . T A ATT A AA C C . ATAC . A TT A A G G . CA GC TG A T A T G GC A T C A C GG G T C C AAG . A A G . A A TTA CC TAGGTGTTTCTAAGT T GATAACAGGGCACGGTGA TAA TGGT GGCTGA C AA AA A . G . T . CAC G GAG AAA . ACACAAAAAGGTCAAGA . AAATT G TTCAAAC TTAT TT . A . A GACG AATTG AG A CACATAAA A C A C A . . T . CG . . A . G . T TC . . . ATCG A . C A . G GCTCGTT NNNNNNNNNNNNNNNNN A . .
blockSeqs : . TTTGA A . . GGT AA . G . T A A . T GTAATAGAT . G GA CACGT . . . TAT . . . C C T . . C . G G T . G GCTGTA . . CA . . G . . . . . . . . . . . A . . . A . . . A G G T ATTCA TA . . A . TA . . T TCG T . . . . . . . . A . . . G . . . . . C A . G . . T . TT A AA . . . A . . T . . G A . . . TT . . A . G . A T . . . C A . G C . . . . . . . . . A ATT . TTCTATATCTTATTGGC . GT . . . A . . G . T . GA . GC A . C . . G AT AATC . . T . G GATG T A A TTGACAT G T . . T . . . . CG . . . . . . . . . . . TCA . . . . . .
blockSeqs : . TTGA T . . TTT CC . G . T A A . G ATGATAAAG . T AA . . . . . . . . . . . . A . . . . . A . AC TA . . A . A . . . C T . . . C . T C . . . . A . . T . . G . . . . T . . C . C . . T . . . . . . . C . . . . . C T . TGAC . GC . . . A . . A . C . C . GC A . A . . G AT TGT . . T . G GATG G A A AAAT A C . . A . . . . T
blockSeqs : . . . GGT . . . . . A . . G AAACGGAC . A G . . . . . . . A . . . . . . C . . . . . C . . . . . A . . . . . . . C . C . . . . . . . . . . . . . . . C T . TGAC . T . . . G . . . . . . G . AC C . . . . G AT TTT . . A . A GATG G T G ACA T T . . T . . . . .
blockSeqs : . . TATCA . . . . T . . . . . C . . . . . . . . . . . . . A . G . . . . . . . . . . . . . . T . . . A . . . . . . . . T A . . . . . AT TGT . . A . G ATG C T G CAA A . . . . . .
blockSeqs : . . . . . . . . . A . . . T . . ATG G T A .
blockSeqs : .
blockSeqCons : A** GGT** ** A* A** ATAATAGAN**** ****** A** T** ** ** N**** T* ** T** A** G**** **** ** NA* A**************** ** AT******** TAT***** *** GATG******** A** NAA******* **
originalCons : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAN--TTT-GC-TCATTTTGGTTCGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGAACCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAGATCGAT-AGAG-CG-TCAGGTTGGAAGAAATAT-CACGTGATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCATACAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATAT-TTACTTAAAAAAAATT-CTA-AAG--AAAT---C-GGGGATCAC-AAA-CC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCA-GCAAATGG-CAAGC-CCCAAAA--TG-TA----------------ACACA--T-----CAAAGTCAAC-----AT---CCA----TGTTAGG--ATGACCTTG---ACCCNG-AGAGA--TG---ACGCAAA----GGTCAAGGN-C--GAGA---ACAT---TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
finalCons : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAAA--TTT-GC-TCATTTGGT--CGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGAATAATAGAN----CG-TCAGGTTGGAAGAAATAT------GATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGAC-AA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AATCA--CAAAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATATT--ACTTAAAAA--ATT-CTA-AAG--AAATN----GGGGATCAC-AAA-CCT-TTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTAT--AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAAA--GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCANA-AAATGG-CAAGC-CCCAAAA--TG-TAA----------------CACA--T-----CAAAGTCAACAT--------CCATAT-----AGG--ATGACCTTG---ACCCNG-AGAGATG--------CAAA----GGTCAAGGN-CA--AGANAA-------TTCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG
Alignments
lowQualScore : 11111111111111111
lowQualScore : 11 55555555555555555555 1 111 1 11 111 666666666666666666666666666666666666666666666 1111 4444444 1 11 1 3333 222 11 11 33333333333333333 222 77777777777777777 11 1 1 2 1 1 1 1 1 1 11 111 1 22222 2222 111 222 22222222222 1 11111 111 1 1 11 1 222 1 1 1 1 1 22222 1 1 222 1 1 1 1 333333333 222 11 1 2222 222222 1 1 1 1 1 1 11 1 1 1 11 11 1 11 1 1 11 1 1 111 11 1 1 1 2 1 11 1 1 222 11 1 11 1 222 1 11 1 2 1 222 1 1 111 33333333333333333 6666666666666666666666666666666 111 1111 111111 22222 1111 1 111 111 22222 44444444444444444444444 111111111 111111 1111 111 11 1 1 1 1 33333 1 11 222 1 1 555555555555 1 1 1 44444444444444444 222 222
lowQualScore : 33 77777777777777777777 0 0 8 3 6 0 8 8 8 777 8 8 11 3 8 0 0 111 8 6 5 999999999999999999999999999999999999999999999 88 8 7777 2222222 0 7 7 1 0 44 7 6 3 6 6 1111 666 44 6 44 77777777777777777 7 333 99999999999999999 7 7 6 7 7 88 3 3 7 6 7 3 3 7 0 0 3 0 0 0 33 9 777 0 55555 3 2 3333 3 777 0 000 88888888888 0 8 5 0 8 8 33333 8 8 3 222 3 6 3 5 88 22 5 111 5 1 5 5 5 5 66666 1 1 5 5 1 111 5 1 1 5 1 5 5 555555555 111 66 5 4444 1 1 999999 5 5 5 5 5 5 88 1 5 22 5 5 88 88 5 88 3 3 88 3 3 7 999 7 88 6 0 3 3 3 6 3 6 7 88 2 8 8 3 3 3 444 3 6 99 44 3 44 6 6 33 2 99 99 99 000 6 6 1 6 1 99 5 7 6 6 6 55 3 0 5 2 333 3 3 7 6 6 6 6 111 99 99999999999999999 8 4444444444444444444444444444444 444 5555 999999 6 99 666 6 6 33333 4444 0 77 000 7 6 888 999 5 8 77 000 5 44444 22222222222222222222222 1 999999999 4 77 666666 0000 66 77 444 6 1 7 6 6 3 99 6 8 8 11 3 3 3 3 6 33333 3 88 333 3 3 777777777777 7 3 6 7 3 3 8888888 00000000000000000 1 000 000
lowQualScore : .. .................... . . . . . . . . . ... . . .. . . . . ... . . . ............................................. .. . .... ....... . . . . . .. . . . . . .... ... .. . .. ................. . ... ................. . . . . . .. . . . . . . . . . . . . . . .. . ... . ..... . . .... . ... . ... ........... . . . . . . ..... . . . ... . . . . .. .. . ... . . . . . . ..... . . . . . ... . . . . . . . ......... ... .. . .... . . ...... . . . . . . .. . . .. . . .. .. . .. . . .. . . . ... . .. . . . . . . . . . .. . . . . . . ... . . .. .. . .. . . .. . .. .. .. ... . . . . . .. . . . . . .. . . . . ... . . . . . . . ... .. ................. . ............................... ... .... ...... . .. ... . . ..... .... . .. ... . . ... ... . . .. ... . ..... ....................... . ......... . .. ...... .... .. .. ... . . . . . . .. . . . .. . . . . . ..... . .. ... . . ............ . . . . . . ....... ................. . ... ...
lowQualScore : 88 22222222222222222222 8 8 0 3 7 8 0 0 0 444 0 2 00 8 0 8 8 888 0 2 0 222222222222222222222222222222222222222222222 88 0 0000 0000000 0 3 3 0 7 00 3 7 3 7 7 7777 777 77 7 00 00000000000000000 3 333 77777777777777777 3 3 7 3 3 00 3 3 3 7 3 3 3 0 0 0 2 0 0 8 88 8 555 0 00000 2 5 2222 2 555 2 888 22222222222 0 0 6 8 0 0 00000 0 0 2 000 2 7 3 0 55 00 5 555 5 0 5 5 0 5 00000 0 0 5 0 0 000 0 0 0 5 0 5 0 555555555 000 55 0 0000 0 0 000000 0 5 5 0 5 0 55 0 0 00 0 5 55 55 5 33 3 3 33 3 3 3 000 3 33 7 7 3 3 3 7 3 7 3 33 5 0 0 8 3 3 777 5 7 22 33 3 00 7 7 55 0 22 22 22 777 7 7 0 7 0 22 5 3 7 7 7 88 3 4 0 5 333 3 3 3 7 7 7 7 777 22 33333333333333333 0 2222222222222222222222222222222 000 4444 222222 7 22 888 7 7 55555 2222 6 99 111 3 7 777 111 7 4 99 000 7 33333 44444444444444444444444 0 111111111 3 99 444444 6666 77 99 999 7 0 8 7 7 7 22 7 0 0 44 3 3 3 3 7 33333 3 33 333 3 3 777777777777 3 3 7 3 3 3 0000000 00000000000000000 0 555 555
consensus : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAA-ATTT-GC-TCATTT-GG-T-CGAGAGGTAAGN-AAAGGG-GCG-CCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGNATTNAGAGAGA-----ATAATAGATCGTCAGGTTGGAAGAAATA-----T------GATAA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGACAA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AA-TCAC--A--AAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATA-TTACTT--AAAAAATTCTA-AAG--AAAT-CGGGGATCAC-AAACC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCAGA-AAATGG-CAAGC-CCCAAAA--TG-TAACACA--TCAAAGTCAACAT---CCA-TA-----TAGGATGACCT------------------TG---ACCCNG-A------GAGA--TG------CAAA----GGTCAAGGA-C--GAGNAAAT-TCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
Reference ( family-3152 ) : NCAGTAG--TATAGAGCGAGTCAAT-------T---TTGA----TACACGACTAA-ATTT-GC-TCATTT-GG-T-CGAGAGGTAAGN-AAAGGG-GCGGCCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGAATTGAGAGAGA-----ATAATAGANCGTCAGGTTGGAAGAAATA-----T------GATGA-AAGG-GGTACC----CGAGAGGT--AT-AGTGTCAAA-TTATTCTAATTAAAAATTTTACCCTTANATTGGGGCCCCTCCGCGGAGTATGGAACAGTCACTAATCCTTTTGGACCGACTTAA-TCCTATTCATC--CGACACGGC-ATGTTACACAGTGTGTATTGATTT-GAGCGCT-TATT-GTTAAATCAA---TTAGG---GAACACA-------AAAAAAGTGACATTGTTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAA-TCA-ATAATGATTGACAA-GTAAACTATTT-GTGACTGT-AAGTGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT--TAAT-----TA----TTT-TAC-ACGGAAGTATAAGGCAGTTAG-AA-TCAC--A--AAT-G-ATTTATGTCGTATTTACTTA-GAGAAAATTCCAACTGGTAATGGAATAAAATTTNNCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAAACTTCCTACATTGTCNTACCCAGAATTTACAACATATACACGATTATCTAGGGATTCAATNGTNGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCNTGTGACAAATGCTATANATNTCTTGTATTTTGTNAGGTATTATTAAGCAGGACTCGGGCCCACGCCTATAAGAAAGTGTNTTGCACGAAATCATATNANGTCACATCAACTCATATGTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGNCATTACTCTCNNTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGCGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAATTTG-AATA-TTACTT--AAAAAATTCTA-AAG--AAAT-NGGGGATCAC-AAACC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGG--ATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGNAGTA-ATTGTGNAACTAGGAAAGA--CAACTCCAAAAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAACACAT---AGAT-GCT-AAATTAATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGCTTGC--CTCANA-AAATGG-CAAGC-CCCAAAA--TG-TAACACA--TCAAAGTCAACAT---CCA-TA-----TAGGATGACCT------------------TG---ACCCNG-A------GAGA--TG------CAAA----GGTCAAGGN-C--AAGANAAT-TCAAACANGCTC-AAAC-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGA-TGCAAAGGTCA-AGGTCGTAAACA-TCAAACAAAC-AATG-ACCATG-AGCCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAATTCA-CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAA-GCCGCTCGTTG-----------------ACCTCGTGTGCCANACACAGACTAAACCTGCGCATGTGGTTTGC
gi|1 : CAGTAGACTATAGAGCGAGTCAAT-------T---TTGT----TACACGACTAATATTTTGCCTCATTTTGG-TTCAAGAGGCAAGA-AAATGG-GCG-CCCTAAGGGACAACGGAACCAA-CAGAAATCAGGACAAGTGACGAAACG-ACCAATCCAGTATTGAGAGAGAGATCGATA-TAG-TCGTCAGGTTGGAAGAAATA-----TTCACGTGATAACAAGGCGGTACC----CGAGAAGTCTATCAGTGTCAAAATTATTCTAATTAACAATTTTACCCTTAAATTGGGGCCCCTCCGCAGATTATGACACAGTCACTAATCCTT--GGACCGACTTAA-TC-TATTCATT--CGACACGGCCATGTTACACAGT-TGTATTGATTT-GAACGCT-TATTTGTTAAATCAACATTTAAG---GAACA---------AAAAAAGTGACATT-TTAATTTTTGGTGTATTTTCAACATTTGATAGAGATAAATGAAAAAAAAAAATCA-ATAATGATTGACAATGTAAACTATTTCGTGACTGTTAAGTGTAACCCTAGGTAT-TTAACACTA-AAGTAAGTGTACATGTATCACGA--ACATGA-TC---GGAAATATG-----ACGGGAAAAACATGGTTGTTACAAAATAATCCGTCAAACA---ACT--TAAT-----TA----TTG-TAC-ACGAAAGTATAAGGCAGTTAGGAA-TCAT--ATAAATTG-ATTTATG-CGTATT-ACTTA-GAGAAAATTCCAACTGGTA--GGAATAAAATTTGTCCAAATCTCGCATGTTTTACACAGATTTTTTAAAATCAAA-CTTCCTACATTGTTATACCCAGAATTTACA-CATATACATGATTA-CTAGGGATTCAATTGTTGAAAGTTCTCCACCCAATTCTGTTCTGTAATATATCTCATATGACAAATGCTATACATTTCTTGTATTTTGTAAAGTATTATTAAGCAGGACTCAGGCCCACGCCTATAAGAAAATATCTTGCACGAAATCATATTAAGTCACATCAACTCATA-GTGATTGCATATTAGAATATATTTGAGTAATCGATAAAAGTATTGCTTTCTAATAGATAGACATTACT-TCATTACTGCGTGTTATTACGGAAATTTTGATTAAAGAAGAGATTAAACTCTTCAACTGACAGAGAAGAGCCCATA-ATGCACAATAAAT-AAATAATGTTCCTTATATGGATAGTTAACAACCGTGT-GACGCGTTAGCTATGTTCATTTTTAGTATCAGTGAGAACTCGTACCCAGGAGAACTCGGTA-CCAG-AAATAGGCCTGTGGGTGGGTTT-GGGTTTTGAAAATTTG-AATATTTACTTAAAAAAAATTCTA-AAGGAAAATCTGGGGATCACAAAACC-TTTCTTGTAGTTGTT-AT-GAGCGGAAAGAGGCTATGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGCA-TA-ATTGTGCAAC--AGAAAGA--CAACTCCAACAGTGTTTTG-C-AAT-ATTTCGATA--ACAGCATCTT-ATGTGTTATATGCCATAA-ACAT---AGATGGCT-AAATTAATCTCGAATAT-TGCCAAA-CA-GA---CACAA-CAA--T--------------TTT-ATTTGGC--T-------------GAC------------TA---AAGT--TAC------TAA-A--GTACCAAACA-GCATA-CTAGCCCAATCAAAACCCTCTCAAATAGTGGGCTTGCAGCTCAGC-AAATGG-CAATC-CCCAAAC--TGCTAACACATTTCAAAGTCAACATTCCCTA-TATTTATTAGGATGACCT------------------TGAACACCTGGCA------GAGACCTGACCACACAAA----GGTCAAGGA-CCAAAGAACATCTCAAAGACGGTC-AAAG-AAATTCAATATCCATGATCCTTGACCCCTGGAGA-TGCAAAGGTCATAGGTCATAACCACTCAAACAAACAAATG-ACCTTGAAGCCTGGGGAGCGAA-AGCAGAGATCAAGG--CCCGTGAATGTTACCAAATTCACCGGGACAATGTCACATGCTTTTCAAACCTACAACACTAA-GCC-------G-----------------ACCTCGTGTGCCACACACAGACTAAACCTGCGCATGTGGTTTGC
gi|10 : gTGAAAAAAAGAA-TTA-AT-------------GTAACCG--TT-GTGGCTGC-AGGTGTAACC-TAGGTAT-TTG---CCACAAGTAGGTATACATTGATCAAGAAGACATGGTTTTTAGGAATT-TGTTTTAAGAGGAAGGACTTAGGAGTTAC--G-TAA---GTCAAACA---ATTCACAATCCGAGTAGTCTCTT-TACAAAGAAAGTAACAAGCAG-TAT-AATTTAC--A--AAT-GCATTTA-GC--TATTTACTTATTAGACAATTACAACTcc
gi|11 : cagacaatgattTTG-AATA-TTACTT--AAAAA-TTCTA-AAG--AAAT-AGGGGTTCAC-AAACC-TTTCTTGTAGTTGTT-AT-GAGCGGAAA-AGG--GTGATTGAATC--AGAGGCG--CTCAATTTA-T-AT-A-TATCAAGGGAAGTA-ATTGTGGAACTAGGAATGA--CAACTTC-AAAGTG-ATTG-C-AAT-CCTTTGATA--ACAGCATCTT-ATGTG-TATATG-CATAACACAT---AGAT-GCT-AAATT
gi|12 : cTTC-GAC-TTTGAAAATTTG-AATA-TCACTT---AAAAATTCTA-AAG--AATT-AGGGGATCAC-AAACCTTTTCTTGTAGTT-TT-ATAGAGCGGAAAGA------GATTGAATTCAAGAGGCGGCCTCAATTTA-TGATAA-CATCAA-GGAAGTA-ATGGTGGAACTAGGAAAGAGCCAACTCCAAAAGTG--TTGCC-AAT-CCTTC-ATA--ACAGCATCTT-ATGTg
gi|13 : tAA-ATTT-GC-TCATTT-GG-T-CGAGAGATAAGCCAAAGGG-GAGACCCTAAGGGA--ATGGA-CCAATCAGAAATCAGGA--AGTGACGAAATGGATCAATC-AGAATTTAGAGGGA-----GTAATAGATTGTCAGGTTTAAACAAATAGCACTT------GATGA-AACG-GGTTCC----Ctgt
gi|14 : gttaattttttatccacgggtaaggtttgctcagtaAGTAG--TATAGAGCTAGACAATATAATCATGGGTTAAGGTTTGCTCGTTAAA-ATTT-AC-TCATTT-TT-T-TGAGAGGTAAG-------------CCCTATGGGA--GTGGA-CCAATCAGAAATAATGA--AGTGACAAAACGGACCAATC-AGAATTTAAAGA-A-----ATA--------TCACGTT-----------------------ATGA-AAGG-GGTACC----CGAGAGG---AT-AGTATCAAG-TTA
gi|15 : AATGTAACC-TAGGTAT-TTAAC-CCA-AAGTAAGTGTACATGCAGCACGA--ACATGAATC---GGAAAT-TG-----ACGGG-AAAACATGATT-TTAC--A-TAATCCGTCAAACATGCAAT--TGAT-----TA----TTT-TAC-ATGGAAGTAT-AGGCAGTTAG-AA-TCAC--A--AAT-G-ATTT
gi|16 : CAAAA--TG-TA-CACA--TCAAAGTCAACAT---CCA-TG-----TAGAATGATCT------------------TG---ACCTAG-A------AA-A--TG------CAAA----TGTCAAGGA-C--AAGCAAAT-TCAAACAAGCTC-AAAC-AAATTCAAAAT--ATGA-CCTTGACCCTGG
gi|17 : CTCAG-TAT-TG-CAAA-CAAGA---CACAA-AAA--T--------------TTTTATTTGGC--T-------------GAC------------TA---AAGG--TAC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCAGA-AA
gi|18 : TCAAATTGTGGGCTT-C--CTCACA-AA-TGG-CAA-T-CCCAAAA--TG-TA-CAAA--TCAAAGTCAACAT---CCA-TT-----TAGGGTGACTT------------------TG---ACCCTG-G------GAGA--CG------CAAA----GGTCAA
gi|19 : C-ACAGAAGTGTAAG-TAGTTAG-AA-TCAC--A--AAC-G-ATTTATGTCCTATTTA
gi|2 : AGTAG--TATAGAGCGAGTCAAT-------T-----GA----TACACGATTAA-TTTTTGC-TCATTT-GG-T-CAAGAGGCAAGA-AAAGGG-GCG-CCCTAAGGGA--A-GGA-CCAATCAGAAATCAGGA--AGTGACGAAACGGACCAATC-AGTATTGAGAGAGA-----ATGATAAAGTGTCAGGTTGGAAGAAATA-----TCACGT-GATAA-AAGG-GGTACC----CGAGAG-T--AT-AGTGTCAAA-TTATTCTAATTAAAA-TTTTATCCTTATATTGGGGCCCTCTCGCAGAGTATGGAACAGTCACTAATC-TTTTGGAC-GACTTAAATCCTATTCATC---GACACG-C-ATGT---ACAA-GTGTATTGATTTTGAGC----TATT-GTTAAATCAA---TTAGG--------CA-------AAAAA-GTGACATTGTTAATTTT-GGTGTATTT--AACATTTGATAGAGATAAATGAAAAAAAATA-TCAGATAATGATTGACAAAGTAAACTATTT-GTGACTGT-A-GTGTAACC-TAGGTATGTTAAC-CTA-CAGTAAGTGTACATGTATCACGA--ACATGAATC---GGAAAT-TG-----ACGGGAAAAACATGGTTGTTACAAA-TAATCCGTCAAACA---ACT---AAT-----TA----TTTATAC-ACGGAAGTATAAGGCAGTTAG-AA-TCATTAA--AAT-G-ATTTATGTCGTACTTA--TG-GAGAAAATTCCAACT-GTAATGGAATAAAATTTTGCC-AATCTCGCATGTTTTACACAGATTTTTT---ATCAAAACTTTCTACATTATCTTATCTAGAATTTACAACAT-TACAC-ATTATCTA-----TCAATGATGAAAAGTTCTCCATCCAATTCTG-TCTGTAATATAT-TCTTGTG-C-AATG-TATAAATATCTTGTA-TTTGTTAGGTATTA-TAAG-AGGACTCGG---------TAT---AAAGTGTA-TGCA-GA----ATATAATGT------AACT-ATATGTGATTGC-TATTA-AATATATTTGAGTAATCGAT-AAAGTATTG-TTTC--ATAGATAGTCATTACTCTCCATACTG-GTG-TATTACGAAA--TTTGA--AAAG-AGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATACATG-ACAATAAATAAAATAA---TCCTT-TATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCG-ACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGT-GGTTT-GGG-TTTGAAAATTTGAAATA-TTACTT---AAAAATTCTA-AAG--AAAT-CGGGGATCAC-AAACC--TTCTTGTAGTTGTT-AT-GAGCG--AAAAGG--ATGATTGAATC--AGAGGCG--CTCAGTTTA---AT-A-TATCAAGGGCAGTA-ATTGTGCAACTAGGAAAGA--CAACTCC-AAAGTGTTTTG-C-AAT-ATTTCGAT---ACAGCATCTT-ATGTG-TATATGCtg
gi|21 : CAATAG--TATAGAGCGAGTCAA--------T---TTGA----TCCACGACT-A-ATTT-GC-Ta
gi|22 : ATTA-TCTCAGATAT-TG-CAAA-CA-GA---CATAACCAA--T--------------T
gi|3 : cATCTCAGATAT-TG-CAAA-CA-GA---CACAA-CAAATT--------------TTT-ATTTGGC--T-------------GAC------------TA---AGGT---AC------TAA-A--GTACCAAA-A-GCATA-C-AG----ATCAAAA----T-CAAATTGTGGGCT-GC--CTCAGA-AA-TGG-CAAGC-CCCAAAC--TG-T-ACACA--TCAAAGTCAACAT---CCATTA-----TAGGATGACCT------------------TG---ACCCTG-G------GAGA--TG------CAAA----GGTCAAGGA-C--AAGAACAT-TCAAAGAGGTTCAAAAG-AAATTCAATAT--ATGA-CCTTGACCCTGGGAGATTGCAAAGGTCA-AGGTT-CAAACA-TCAAACAAAC-AATG-ACCATG-A-CCTGG-----GAG-AGCAGAGATCAAGG--CC---GAAT-TTA-CAAAT----CG----AATGTCACATG-TTTTCAAACGTACAA-ACTAAGGCCGCTCGTTGNNNNNNNNNNNNNNNNNNNNNNNNNTGCCAAA---AGACTAAAC---TGCATGTGGTTTGC
gi|4 : tAGATATGTG-CAAAACA-GATTACACAA-CAA--TAGGTGTTTCTAAGTTTT-ATTTGGCGAT-------------AACAGGGCACGGTGATA---AAGTGGTAC------TAA-A--ATACCAAA-AAGCATA-C-A--------AAAA----TTCAAATTGTGAGCCTGC--CTCA----AATGGGCAAGAGCCCAAAAAATG-TACCACA--TCAAAGTCAGCAT---CCA-TG-----TAGAATGATCT-------------------G---ACCTAG-A------AA-A--TG------CAAAAATTGGTCAAGGAGC--AAGCCAAT-TCAA-CAAGCTC-AAAC-AAATTCAAAAT--ATGA-ACTTGACCCTGGGAGA-TGCAAAGGTCA-AGGT--TCAACA-TCAATCAAAC-AATGAACCATG-AGCCTGG-----GAGTAGCAGAAATCAAGGTCCC---GAAT-TTA-CAA--TCA-----------TCAC--G-TTTT--AATGCAC-A-ACTAA-GCCGCTCATacc
gi|5 : tcagGAGAT--AACTC-TCAACT-ACAGAGAAGAG--CATA-ATG-ACAATAAATAAAATAATG-TCCTTATATGGATAGTTAAT--CAGTGTGGACGTGTCAGCTATG-TCA-TTTTAGTATCAG-GAGAACTCGAACCCAGGAGAACT-GGTACCCAGAAAATAGG--TGTGGGTGGGTTT-GGG-TTTGAAAA--TGAAATAGTTACTT--AAAAATTCCTACAAG--AAAT-CGGGGATCAC-AAACC--TTCTTGTAGTTGTTAAT-GAGCCGAAA-AGG--ATGATTGAATC--AGA-GCG--CTCAGTTTA---AT-ATTATCAAGGGCAGTA-ATTGTGCAACTGGAAAAGA--CAACTCCAAAGGTGTTTTG-CAAAT-ATTTCG-TAC-CCAGCATCTTGATGTG-TATATG-CATAACAC
gi|6 : TT-GC--CAT---GGAT-CAAGATGTATGC-CAAGGGAGCGGCCCTAAGGGA--ATGGA-CCAATCGGAAA---GG------GATAAAACGGACCGATC-A-----------GA-----AT----------------GGAGAAAAAA-----T------GATAA----G-AGTATCATTTTGAAAG---------TATCAAA-TTATTCTAATTAAAAATT---CCCTTACATTGGGGCCTCTCCGCGAAGTATGGAACAGTCACTAATCC-TTTGGACCGACTTAA-TCCTATT-ATCAAC-ACACGG--ATG-TACA-AGTGTATACTGA--------GCTGTA---GT--AATCAA---TTAGGAACGAATACATATGTAGAAGAAAGTG--ATTGTTAA-TTTTGGTG
gi|7 : AGATAT-TG-CAAG-CA-GA---AAGAA---A--T--------------GAT-ATTTGGT--TTCTATATCTTATTGGC------------TATAAAAGG--CACGGCTGATAA-AAAGTACCAAA-G-GCATA-C-AA----ATCAAAA----TTCAAATTGTGGGC-TGC--CTCACACAAATGG-CAGGC-CCC---------CAATACA--TT-------ATAT---CAA-TA-----AGGGATGGCCT------------------TG---ACCCAG-A-------AGA--TG------TAAA----CGTCAAGGT-C--GAG---AT-TCAAACATG----AAAC-AA-------AC--ATTA-CCATGAGCCTGGGAGG-AGCAGAAATCA-AGACCG
gi|8 : GGTGGGTTTTGGG-TATGAAAACTTG-AATA-TTACTT---CAAAATTCTC-AAG--AAATATACGGGTCACAAAACC-TTTC-TGTAGTTGTT-AT-ACGC-AAAAAAGG--ATGATTGAATC--AGAGGTG--TCAAATTTATT-AT-A-TATCAAGGGAAGTATTTTGTGGGACTGGAAATGA--CAACGCC-AAAGTGTTTGG-C-AATCATTCGGATAGGACAGCATCTTAATGTGTATTATGGCATAACACATAAGAGAT-GCTAAAATTAaatttacaagatcg
gi|9 : gt------TAACA--ATACCAAA-A-GCATAAC-A-----ACCAAAT----TTAAAACTGTAG---TGC--CT--AA-AAATGG-AAAAC-ACCAAAA--TC-TAACACA--AAAAGGTCAAGAC---ACA-TAAAT--TCAAACAACTTCAAACCAAAATCAGTTTATA---ACCTTG-ACTCTCAGAGA--TG------CAAA----GATCAAGGT-C--GAGAt
gi|9 : ttattcagaattgctaaaaaaaacacaaccaagatatatcgttctatattttctgtgatgaagcacagtataagagAAA----GGTCAAG-A-C--ACATAAAT-TCAAACAACTTC-AAACCAAAATCAGTTT--ATAA-CCTTGACTCTCAGAGA-TGCAAAGATCA-AGGTCGttgacatcc
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): TTATTTAATCCACGGTTAAGGTTTGTCGGTAAATTTTGCTCATTTGG