lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111
lowQualScore : 11 111 111111 111 2222222222 1111111 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 33333333333333 11 000000000000000000000000000000000000000000 22 22 2222222222
lowQualScore : 7 11 55 4 3 88 999 5 000000 33 2 222 3 3 88 44 3 6 3 6666666666 666 1111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 4 33333333333333 3 4 22 55 0 2 77777 6666 6666 444 777 2 555555555555555555555555555555555555555555 00 33 6 9999999999 3 6 3
lowQualScore : . .. .. . . .. ... . ...... .. . ... . . .. .. . . . .......... ... ....... ............................................................................................................... . . .............. . . .. .. . . ..... .... .... ... ... . .......................................... .. .. . .......... . . .
lowQualScore : 3 88 00 4 8 44 777 7 666666 99 9 999 1 1 55 22 1 2 1 4444444444 444 8888888 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0 4 00000000000000 3 8 99 44 7 9 11111 1111 9999 777 333 6 888888888888888888888888888888888888888888 44 66 0 2222222222 3 7 3
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTGTATTGATCA-TCAT-TAG--CTTT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TT-GTA---TT-------TTG-------G-----------GGC-----TT-------------TTA---T---T---------------GTN----TTA-TN-A-------T----G--CT-----------TTGT-TA-TGC-----------C-CC-CAGTGGGACCTTGAT-TGGCA-AA-----TA----AAA---GATTGT---A---TGTATNG-A-----ACGNACCACA----TT-TTATTGC-T-TATA--CTTTGTGTATGCC-CCCAGTGGGACC----------TTG-ATT-GG-AAAATAAAA
Reference ( gi|1 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTGTCTTGATCA-TCAT-TGG--CTTT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TT-GTA---TT-------TTG-------G-----------GGC-----TT-------------TTA---T---T---------------GCC----TTA-TA-A-------T----G--CT-----------TTGT-TA-TGT-----------C-CC-CAGTGAGACCTTGAG-TGGCA-AA-----TA----AAA---GATTGT---A---TATATAA-A-----ACGTACCANAGGGCTT-TTATTGCCT-TATG--CTTTGT-TATGCT-CCCAGTGGGGCC----------TTG-ATT-GG-AAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATATGT---ATTGC----ATCA-TCATCTAG--CTTTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TT-ATA------------TTG----------------------------T-------------TTA---C---G---------------AACACGATTATTA-G-------T----GTACT-----------TTGT-TA-TGC-----------CGCT-CAGTGGGACCTTGA--TGG-A-AA-----TA----AAA---GATT-T---A---T
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTGTATTGAT--------TG----------CT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Atgtt
gi|5 : tATAGATATACAT--CACAGGG--CACTG-TTCCTT-ATAATTGA--TTA-CTGAAACA-TCAC-TAG--CTTT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACT-AA-----------A---TT-------TTA-------------------------------------------TA---T---T----------------------------------------------T-----------TTGT-CA-T-------------------AAT-AGA-----AG-CGTCA-AACCATCTA----AAATTTGATT-T---A---TGTATTG-TTT---ACGAATCACA-------TTATT-CAT-TGTAA-CTTTGTCTATGCC-CCCATTGGGACC----------TTG-ACT-GG-AAAATAAAA
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAATagattgtattg
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|19 : AAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTGTAGTGATCA-TCAT-TAG--CTTT--CCT-GG---T
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG-ATTGATCATTCATCTAGCACTTT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T---TA---TT-------TT
gi|2 : gatAAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG-ATTGATCATTCATCTAGCACTTT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T---TA---TT-------TTcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|14 : gatAATATACAT-ACACAGGG--CACT----------------------TCTTGAT-----AT-TGA--GCTT--CCT-GT---TGT-AAGG--AG--ATAA--TCC-AA-CT-ACT-AA------TT-ATA---TT-------TTG---------------------------TC-------------TTA---TGTAT---------------GTT----GTA-CA-AACACCATT----A--CT-----------TTGT-TA-TG------------C-CC-CAGcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|9 : tatATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGGTACTGATC--------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TT-GTA---TT-------TTT-------T-----------GGC-----TT-------------TTA---T---TCAATGTTTACAAATCACA----TTA-TT-A-------TTGTAA--CT-----------ATGT-AA-TGC-----------C-CC-CAGTGGGACCTTGAT-TGGCA-AA-----TA----AAA---GATTGC---A---T
gi|8 : gaATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG-CATGATCA-TCAT-TAG--CTTT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TT-ATA---TT-------TTGT------GTAATAGAATGCGGCAAACATC-------------TTAAATT---T---------------GTC----TTA-TGTA-------T----G--TTAACGAATCACATTAT-TATTGTAACTTTGTATGC-CCCCAGTGGGACCTTGAT-TGGAA-AA-----TA----AAA---GATTGT---A---tgtattgtaaatgat
gi|13 : taTGATGTCTGAAATTGTACTGATCA-TCGT-TAG--CTTT--CTT-GG---TGT-GGAGG-AG--ATAA--TCAAAA-TT-TTT-CATT----TTCTTG---TT-------TTG-------
gi|7 : TGAAATTGTACTGATCA-TCAT-TAG--CTTT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTT-GCA---TT-------CTcattgtttggctttactggcctgcatgtttacaaatcatattat
gi|6 : TGAAATTGTACTGATCA-TCAT-TAG--CTTT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTT-GCA---TTCTATCTATTG-------G-------------------TT-------------TTT---T---T---------------GGT----TT--TT-T-------T----G--TT-----------TTGT-Tatctatttggtttttttggtttttttgtttgttttttttgggggggggggggcttttatttacaaatcgtattatcattgtaactatgttatgtcccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|4 : ATTGTATTGATCA-TCAT-TAG--CTTT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|11 : -TCAT-TGC--TCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TT-TTACTATT-------TTGTCTATGTA-----------TGT-----TTGACGTAATACACATTA---T---T---------------AC-----TTG-TA-A---------------CT-----------TTGTGTA-TGC-----------C-CC-CAGTGGGACCTTGAATTGGCACAA-----TA----ACA---GTTGGT---A---Tgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|7 : G-------G-----------GGC-----TT-------------TTA---T---TTACAAATC-------GTA----TTA-TC-A-------TTGTAA--CT-----------ATGT-TA-TGT-------------CC-CATTGGGA-----------CA-AA-----TA----AAA------TGT---A---ACTATTG-A-----ACATGCCAtgta
gi|6 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggG-------G-----------GGC-----TT-------------TTA---T---TTTACAAATC------GTA----TTA-TC-A-------TTGTAA--CT-----------ATGT-TA-TGT-----------C-CC-CATTGGGA-----------CA-AA-----TA----AAA------TGT---A---ACTATTG-A-----ACATGCCAttgagtga
gi|4 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttggggggggggggg-------------TTA---T---T---------------A------TTG-TA-A---------------CT-----------TTGT-TA-TG------------C-CC-CAGTGGGACCTTGAT-TGGAA-AA-----TA----AAA---GATTGT---ATTGTATATAttgagtga
gi|15 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcaca-CC-CAGTGGGACATTGAT-TGGCA-AA-----TA----AAA---TATTGT---A---Ttattgtattgtatatataaagttgga
gi|12 : -CAGTGGGACCTTGAT-TGGAA-AA-----TA----AAA---GATTGT---AT--TGTAT----------TGTACC-TTGAACTT-T--TTGCCgcagatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|16 : -CAGTGGGACATTGAT-TGGCA-AA-----TA----AAA---GATTGT---A---Taaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|20 : GGGACCTTGAT-TGGAA-AA-----TA----AAA---AATTGT---A---Tgaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|23 : TGAT-TGGCA-AA-----TA----AAA---GATTGC---A---TA-GTAA-A-----ACGtgtattgtataccata
gi|8 : G-CGGCA-AA-----CATCTTAAA---T-TTGTCTTA---TGTATGTTA-----ACGAATCACA----TTATTATTG----TA-A--CTTTGT--ATGCC-CCCAGTGGGACC----------TTG-ATT-GG-AAAATAAAAa
gi|4 : taataatacacacgggcactgttccttgatattgtattgcatgatcatcattagctttcctgtgtaagggagataatcaactactaattttatattttgtgtaatagaatTGT---A---TATATGT-ATGTTTACGAATCACA----TTATTATTG----TA-A--CTTTGT-TATGC--CCCAGTGGGACC----------TTG-ATT-GG-AAAATAAAAgattgta
gi|9 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtctta-TTATTG----TA-A--CTATGT-AATGCC-CCCAGTGGGACC----------TTG-ATT-GG-CAAATAAAAgattgtattgtatatatattgtattgtatatataaagttgga
gi|11 : gaatacacacacagggggcactgtcccttgatgtcggaaatggtactgatctggtgtgagggagacaatccaaaactacttgtattttttggcttttattcaatgtttacaaatcacatta-TTATTACTTGTA-A--CTTTGTGTATGCC-CCCAGTGGGACC----------TTGAATT-GGCACAATAAgattgcattgtattgtaaatgat
gi|10 : tcattgctcttccttggtgtaagggagataaattccaaagctactgaacttttactattttgtctatgtatgtttgacgtaatacaca-TGTA--CTTTGT-TATGCCGCTCAGTGGGACC----------TTG-AT---G-GAAATAAAAcagttggtattgta
gi|3 : ataaaatacacacacaggggcactggttccttgatatgtattgcatcatcatctagctttttcctggatgttaaggaagataatctaaactactgaattttatattgtttacgaacacgattattag-TATGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTG-ATTGGG-AAAATAAAgatttattgtt
gi|2 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatg-TATGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTG-ATTGGG-AAAATAAAga
gi|15 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatg-CCCAGTGGGACA----------TTG-ATT-GG-CAAATAAAAga
gi|12 : CAGTGGGACC----------TTG-ATT-GG-AAAATAAAAtattgtatgcagatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|16 : CAGTGGGACA----------TTG-ATT-GG-CAAATAAAAgattgtattgtattgtaccttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|20 : GGGACC----------TTG-ATT-GG-AAAATAAAAgattgtatgaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 1111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2222222222222 1 11111 1111 22 333 11 1 7777777777 1
lowQualScore : 6 00 33 777 5 444 1 2 2 5 8 0 77 2 33 2 222 2 2 77 33 2 5 5 44444 3 555 8888888888888888 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3 4444444444444 4 3 0 1 3 5555 3 2 88888 33 7777 33 888 7 55 6 0000000000 6
lowQualScore : . .. .. ... . ... . . . . . . .. . .. . ... . . .. .. . . . ..... . ... ................ ................................................................................................ . ............. . . . . . .... . . ..... .. .... .. ... . .. . .......... .
lowQualScore : 7 00 88 999 6 777 6 9 9 3 0 1 33 7 77 7 000 9 9 99 99 9 7 7 22222 7 888 5555555555555555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 4444444444444 0 1 3 5 1 1111 3 9 11111 22 0000 88 555 3 66 0 0000000000 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GTNT--------------TAT-TA-------T----G---CT-----------TTGT-TAT-------------GCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGTA-T-GTATTGN--ACGTACCACA----TTA-TTATTG-C-TATACTTTGTGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GTNT--------------TAT-NA-------T----G---CT-----------TTGT-TAT-------------GCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGTA-T-GTATNGA--ACGNACCACA----TT--TTATTG-CTTATACTTTGTGTATGCC-CCCAGTGGGACC----------TTGATT-GGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GCCT--------------TAT-AA-------T----G---CT-----------TTGT-TAT-------------GTC-CCCAGTGAGACCTTG-AGTGGCA-AATAAAA---GATTGTA-T-ATATAAA--ACGTACCANAGGGCTT--TTATTGCCTTATGCTTTGT-TATGCT-CCCAGTGGGGCC----------TTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTG------T-------TTA-C-----------GAA-----CACGA---T--------------TAT--------------TAG-TG-------T----A---CT-----------TTGT-TAT-------------GCCGCTCAGTGGGACCTTG-A-TGG-A-AATAAAA---GATT-TA-T-
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTAT--------T-------TTG----------------------TCTA---TGTAT---------GTTTGACGTAATACACATTAT-TACT-----T----GTAACT-----------TTGTGTAT-------------GCC-CCCAGTGGGACCTTGAATTGGCACAATAACA---GTTGGTATT-GTAtgtt
gi|12 : CAGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTATT-GTATTGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---T--------T-------TT----------------C-----TTGTT---T---T---------GCAT--------------TGT-TT-------G----G---CT-----------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT--------------ATTG-A------------G--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCC-AA-CT-ACT-AA------TTATA---T--------T-------TTG---------------------TCTTA---TGTAT---------GTTG--------------TAC-AAACACCATT----A---CT-----------TTGT-TAT-------------GCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AATAAAA---TATTGTA-T-GCAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AATAAAA---GATTGTA-T-Ggatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-AT------------------T--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--------T-------TT
gi|2 : gatTGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtaGGGACCTTG-ATTGGAA-AATAAAA---AATTGTATT-GTATTGT--A--TACCATA----ga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AATAAAA---GATTGCA-TAGTA--AA--ACG
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--------T-------TTa
gi|3 : gatTGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtaATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TGTA-T-GTTT-----ACGAATCACA----TTA-TTATTG---TA-ACTTTGT-TATGCC-CC-AGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatataTAT--------------TAT-TG-------T----AA--CT-----------TTGT-TAT-------------GCC-CC-AGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTATT-GTATA----------TATA----TT--GTATTG-TATATAgattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---T--------T-------TTtaaagttgga
gi|5 : TAAAATTTGATT-TA-T-GTATTGTTTACGAATCACA----TTATTCATTG---TA-ACTTTGTCTATGCC-CCCATTGGGACC----------TTGACT-GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---T--------TCTATCTATTG-G-------------------TTTTT---T---T---------GGTT--------------T-T-TT-------T----G---TT-----------TTGT-Tagattgtattg
gi|6 : G-G-----------GGC-----TTTTA---T---TTTACAAATCGTAT--------------TAT-CA-------TTGTAA---CT-----------ATGT-TAT-------------GTC-CCCATTGGGA-----------CA-AATAAAA------TGTA-A-CTATTGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTAT-------TTG-G-------------------TTTTT---T---T---------GGTT--------------T-T-TT-------T----G----T-----------TTGT-Tttgagtga
gi|7 : G-G-----------GGC-----TTTTA---T---TTACAAATC-GTAT--------------TAT-CA-------TTGTAA---CT-----------ATGT-TAT-------------G-T-CCCATTGGGA-----------CA-AATAAAA------TGTA-A-CTATTGA--ACATGCCAttttttgggggggggggggcttttatttacaaatcgtattatcattgtaactatgttatgtcccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---T--------T-------TTGTGTAATAGAATGCGGCAAACATCTTAAATT---T---------GTCT--------------TATGTA-------T----G---TTAACGAATCACATTAT-TATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---T--------T-------TTT-T-----------GGC-----TTTTA---T---TCAAT-----GTTTACAAATCACAT---TAT-TA-------TTGTAA---CT-----------ATGT-AAT-------------GCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGCATT-GTATTG
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 1111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 1 2222 1 333 1 11 2 4444444444 1
lowQualScore : 6 00 33 777 5 666 4 2 2 5 8 77 2 33 2 222 2 2 77 33 2 5 5 66666 3 555 8888888888888888 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 5555555 4 3 0 1 3 5555 0 2 4 777 1111 7 3 444 0 55 0 5555555555 5
lowQualScore : . .. .. ... . ... . . . . . .. . .. . ... . . .. .. . . . ..... . ... ................ ............................................................................................................ ....... . . . . . .... . . . ... .... . . ... . .. . .......... .
lowQualScore : 7 00 88 999 6 555 0 9 9 3 0 33 7 77 7 000 9 9 99 99 9 7 7 33333 7 888 5555555555555555 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 5555555 0 1 3 5 1 1111 7 9 0 111 2222 3 3 333 6 66 0 8888888888 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGTA-T-GTAT-TGT--ACGTACCACA----TTATT-ATTG---TATACTTTGTGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGTA-T-GTAT-TGN--ACGTACCACA----TTATT-ATTGC--TATACTTTGTGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--------T-------TTG-G-----------GGC-----TTTTA---T---T---------GCCT--------------T-----------AT-AA--T----G---CT-----------------TTGT-------TATGTC-CCCAGTGAGACCTTG-AGTGGCA-AATAAAA---GATTGTA-T-ATAT-AAA--ACGTACCANAGGGCTT-TT-ATTGCCTTATGCTTTGT-TATGCT-CCCAGTGGGGCC----------TTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTG------T-------TTA-C-----------GAA-----CACGA---T--------------TAT--------------T-----------AG-TG--T----A---CT-----------------TTGT-------TATGCCGCTCAGTGGGACCTTG-A-TGG-A-AATAAAA---GATT-TA-T-
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTAT--------T-------TTG----------------------TCTA---TGTAT---------GTTTGACGTAATACACATT-----------AT-TACTT----GTAACT-----------------TTGTG------TATGCC-CCCAGTGGGACCTTGAATTGGCACAATAACA---G-TTG-----GTAT-TGT--Atgtt
gi|12 : CAGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTATT-GTAT-TGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---T--------T-------TT----------------C-----TTGTT---T---T---------GCAT--------------T-----------GT-TT--G----G---CT-----------------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT-------ATTG--------------------AG--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCCAA--CT-ACT-AAT------TATA---T--------T-------TTG---------------------TCTTA---TG--T---------ATGT--------------TGTACAAACACCAT-TA-----------CT-----------------TTGT-------TATGCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AATAAAA---TATTGTA-T-GCAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AATAAAA---GATTGTA-T-Ggatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-A------------------TT--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--------T-------TT
gi|2 : gat--TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtaGGGACCTTG-ATTGGAA-AATAAAA---AATTGTATT-GTAT-TGT--A--TACCATA----ga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AATAAAA---GATTGCA-TAGTA
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--------T-------TTaaacga
gi|3 : gat--TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtaATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TATA-T-GTATGTTT--ACGAATCACA----TTATT-ATTG---TA-ACTTTGT-TATGCC--CCAGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtaTAT--------------T-----------AT-TG--T----AA--CT-----------------TTGT-------TATGCC-CC-AGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTATT-GTAT-gattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---T--------T-------TTatatattgtattgtatatataaagttgga
gi|5 : TAAAATTTGATT-TA-T-GTAT-TGTTTACGAATCACA----TTATTCATTG---TA-ACTTTGTCTATGCC-CCCATTGGGACCTT---GACT--------GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---T--------TCTATCTATTG-G-------------------TTTTT---T---T---------GGTT--------------T------------T-TT--T----G---TT-----------------TTGT-------Tagattgtattg
gi|6 : G-G-----------GGC-----TTTTA---T---TTTACAAATCGTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATGTC-CCCATTGGGA-----------CA-AATAAAA------TGTA-A-CTAT-TGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTAT-------TTG-G-------------------TTTTT---T---T---------GGTT--------------T------------T-TT--T----G----T-----------------TTGT-------Tttgagtga
gi|7 : G-G-----------GGC-----TTTTA---T---TTACAAATC-GTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATG-T-CCCATTGGGA-----------CA-AATAAAA------TGTA-A-CTAT-TGA--ACATGCCAttttttgggggggggggggcttttatttacaaatcgtattatcattgtaactatgttatgtcccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---T--------T-------TTGTGTAATAGAATGCGGCAAACATCTTAAATT---T---------GTCT--------------T-----------ATGTA--T----G---TTAACGAATCACATTATTATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AATAAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---T--------T-------TTT-T-----------GGC-----TTTTA---T---TCAAT-----GTTTACAAATCACAT---T-----------AT-TA--TTGTAA---CT-----------------ATGT-------AATGCC-CCCAGTGGGACCTTG-ATTGGCA-AATAAAA---GATTGCATT-GTAT-TGT--A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 1111 1111111111 1 111 1 1 22 4444444444 1
lowQualScore : 6 00 33 777 5 666 4 2 2 5 8 77 2 33 2 222 2 2 77 33 2 5 5 66666 3 555 44 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555 0 3 2 2 0000 6666 99999999 8 33 888 9999999999 5 1 000 2 9 44 5555555555 5
lowQualScore : . .. .. ... . ... . . . . . .. . .. . ... . . .. .. . . . ..... . ... .. ........................................................................................................................ ....... . . . . .... .... ........ . .. ... .......... . . ... . . .. .......... .
lowQualScore : 7 00 88 999 6 555 0 9 9 3 0 33 7 77 7 000 9 9 99 99 9 7 7 33333 7 888 66 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555555 7 6 9 5 0000 8888 33333333 6 99 888 6666666666 7 4 000 0 2 33 8888888888 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGTGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GCCT--------------T-----------AT-AA--T----G---CT-----------------TTGT-------TATGTC-CCCAGTGAGACCTTG-AGTGGCA-AAT----AAAA---GATTGTA-T-A-TAT-AAA--ACGTACCANAGGGCTT-T-T-AT-TGCCTTATGCTTTGT-TATGCT-CCCAGTGGGGCC----------TTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTGT-------TTA-C-----------GAA-----CACG--A---T--------------TAT--------------T-----------AG-TG--T----A---CT-----------------TTGT-------TATGCCGCTCAGTGGGACCTTG-A-TGG-A-AAT----AAAA---GATT--------TAT-TGT--
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTAT--T-------TTG----------------------TCT--A---TGTAT---------GTTTGACGTAATACACATT-----------AT-TACTT----GTAACT-----------------TTGTG------TATGCC-CCCAGTGGGACCTTGAATTGGCACAAT----AACA---G-TTG-----G-TAT-TGT--At
gi|12 : CAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTATT-G-TAT-TGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---T--T-------TT----------------C-----TTGT--T---T---T---------GCAT--------------T-----------GT-TT--G----G---CT-----------------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT-------ATTG--------------------AG--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCCAA--CT-ACT-AAT------TATA---T--T-------TTG---------------------TCTT--A---TG--T---------ATGT--------------TGTACAAACACCAT-TA-----------CT-----------------TTGT-------TATGCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AAT----AAAA---TATTGTA-T-G-CAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-gatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-A------------------TT--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--T-------TT
gi|2 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgGGGACCTTG-ATTGGAA-AAT----AAAA---AATTGTATT-G-TAT-TGT--A--TACCATA----ga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AAT----AAAA---GATTGCA-TAG-TA
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--T-------TTaaacga
gi|3 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TATA-T-G-TATGTTT--ACGAATCACA----TTAT-T-AT-TG---TA-ACTTTGT-TATGC--CCCAGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtaTAT--------------T-----------AT-TG--T----AA--CT-----------------TTGT-------TATGCC-CC-AGTGGGACCTTG-ATTGGAA-AAT----AAAA---GAT-----T-G-TAT-TGT--ATAT---ATA----TTG--T-AT-TG---TATAgattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---T--T-------TTtataaagttgga
gi|5 : T----AAAATTTGATT-TA-T-G-TAT-TGTTTACGAATCACA----TTAT-TCAT-TG---TA-ACTTTGTCTATGCC-CCCATTGGGACCTT---GACT--------GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---T--TCTATCTATTG-G-------------------TTTT--T---T---T---------GGTT--------------T------------T-TT--T----G---TT-----------------TTGT-------Tagattgtattg
gi|6 : G-G-----------GGC-----TTTT--A---T---TTTACAAATCGTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATGTC-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---T--TCTATCTATTT-G-----------GTT-----TTTTTGG---T---T---------TTTT--------------T-----------GT-T---T----G---TT-----------------TTTT-------T-TGGG-GGGGGGGGGGCTTTT-ATTTACA-AAT---------------------------------CGTA---------TTAT-C-AT-TG---TA-ACTATGT-TATGT--CCCATTGGGACttgagtga
gi|7 : G-G-----------GGC-----TTTT--A---T---TTACAAATC-GTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATG-T-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---T--T-------TTGTGTAATAGAATGCGGCAAACATCTT--AAATT---T---------GTCT--------------T-----------ATGTA--T----G---TTAACGAATCACATTATTATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---T--T-------TTT-T-----------GGC-----TTTT--A---T---TCAAT-----GTTTACAAATCACAT---T-----------AT-TA--TTGTAA---CT-----------------ATGT-------AATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGCATT-G-TAT-TGT--A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 1111 1111111111 1 111 1 2 111 4444444444 1
lowQualScore : 6 00 33 777 5 666 4 2 2 5 8 77 2 33 2 222 2 2 77 33 2 5 5 66666 3 555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5555555 0 3 2 2 0000 6666 99999999 8 33 888 9999999999 5 1 000 2 0 555 5555555555 5
lowQualScore : . .. .. ... . ... . . . . . .. . .. . ... . . .. .. . . . ..... . ... ........................................................................................................................ ....... . . . . .... .... ........ . .. ... .......... . . ... . . ... .......... .
lowQualScore : 7 00 88 999 6 555 0 9 9 3 0 33 7 77 7 000 9 9 99 99 9 7 7 33333 7 888 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555 7 6 9 5 0000 8888 33333333 6 99 888 6666666666 7 4 000 0 0 333 8888888888 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GCCT--------------T-----------AT-AA--T----G---CT-----------------TTGT-------TATGTC-CCCAGTGAGACCTTG-AGTGGCA-AAT----AAAA---GATTGTA-T-A-TAT-AAA--ACGTACCANAGGGCTT-T-T-AT-TGCCTTATGCTTTGT-TATGCT-CCCAGTGGGGCC----------TTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTGT-----TTA-C-----------GAA-----CACG--A---T---T-----------AT--------------T-----------AG-TG--T----A---CT-----------------TTGT-------TATGCCGCTCAGTGGGACCTTG-A-TGG-A-AAT----AAAA---GATT--------TAT-TGT--
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTATT-------TTG----------------------TCT--A---TGTAT---------GTTTGACGTAATACACATT-----------AT-TACTT----GTAACT-----------------TTGTG------TATGCC-CCCAGTGGGACCTTGAATTGGCACAAT----AACA---G-TTG-----G-TAT-TGT--At
gi|12 : CAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTATT-G-TAT-TGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---TT-------TT----------------C-----TTGT--T---T---T---------GCAT--------------T-----------GT-TT--G----G---CT-----------------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT-------ATTG--------------------AG--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCCAA--CT-ACT-AAT------TATA---TT-------TTG---------------------TCTT--A---TG--T---------ATGT--------------TGTACAAACACCAT-TA-----------CT-----------------TTGT-------TATGCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AAT----AAAA---TATTGTA-T-G-CAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-gatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-A------------------TT--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---TT-------TT
gi|2 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgGGGACCTTG-ATTGGAA-AAT----AAAA---AATTGTATT-G-TAT-TGT--A--TACCATA----ga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AAT----AAAA---GATTGCA-TAG-TA
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---TT-------TTaaacga
gi|3 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TATA-T-G-TATGTTT--ACGAATCACA----TTAT-T-AT-TG---TA-ACTTTGT-TATG-C-CCCAGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtaTAT--------------T-----------AT-TG--T----AA--CT-----------------TTGT-------TATGCC-CC-AGTGGGACCTTG-ATTGGAA-AAT----AAAA---GAT-----T-G-TAT-TGT--ATAT---ATA----TTG--T-AT-TG---TATAgattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---TT-------TTtataaagttgga
gi|5 : T----AAAATTTGATT-TA-T-G-TAT-TGTTTACGAATCACA----TTAT-TCAT-TG---TA-ACTTTGTCTATGCC-CCCATTGGGACCTT---GACT--------GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTATTG-G-------------------TTTT--T---T---T---------GGTT--------------T------------T-TT--T----G---TT-----------------TTGT-------Tagattgtattg
gi|6 : G-G-----------GGC-----TTTT--A---T---TTTACAAATCGTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATGTC-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTATTT-G-----------GTT-----TTTTTGG---T---T---------TTTT--------------T-----------GT-T---T----G---TT-----------------TTTT-------T-TGGG-GGGGGGGGGGCTTTT-ATTTACA-AAT---------------------------------CGTA---------TTAT-C-AT-TG---TA-ACTATGT-TATG-T-CCCATTGGGACttgagtga
gi|7 : G-G-----------GGC-----TTTT--A---T---TTACAAATC-GTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATG-T-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---TT-------TTGTGTAATAGAATGCGGCAAACATCTT--AAATT---T---------GTCT--------------T-----------ATGTA--T----G---TTAACGAATCACATTATTATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---TT-------TTT-T-----------GGC-----TTTT--A---T---TCAAT-----GTTTACAAATCACAT---T-----------AT-TA--TTGTAA---CT-----------------ATGT-------AATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGCATT-G-TAT-TGT--A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 1111 1111111111 1 111 1 2 111 4444444444 1
lowQualScore : 6 00 33 777 5 666 4 2 2 5 8 77 2 33 2 222 2 2 77 33 2 5 5 66666 3 555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 5555555 0 3 2 2 0000 6666 99999999 8 33 888 9999999999 5 1 000 2 0 555 5555555555 5
lowQualScore : . .. .. ... . ... . . . . . .. . .. . ... . . .. .. . . . ..... . ... ........................................................................................................................ ....... . . . . .... .... ........ . .. ... .......... . . ... . . ... .......... .
lowQualScore : 7 00 88 999 6 555 0 9 9 3 0 33 7 77 7 000 9 9 99 99 9 7 7 33333 7 888 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 5555555 7 6 9 5 0000 8888 33333333 6 99 888 6666666666 7 4 000 0 0 333 8888888888 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GCCT--------------T-----------AT-AA--T----G---CT-----------------TTGT-------TATGTC-CCCAGTGAGACCTTG-AGTGGCA-AAT----AAAA---GATTGTA-T-A-TAT-AAA--ACGTACCANAGGGCTT-T-T-AT-TGCCTTATGCTTTGT-TATGCT-CCCAGTGGGGCC----------TTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTGT-----TTA-C-----------GAA-----CACG--A---T---T-----------AT--------------T-----------AG-TG--T----A---CT-----------------TTGT-------TATGCCGCTCAGTGGGACCTTG-A-TGG-A-AAT----AAAA---GATT--------TAT-TGT--
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTATT-------TTG----------------------TCT--A---TGTAT---------GTTTGACGTAATACACATT-----------AT-TACTT----GTAACT-----------------TTGTG------TATGCC-CCCAGTGGGACCTTGAATTGGCACAAT----AACA---G-TTG-----G-TAT-TGT--At
gi|12 : CAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTATT-G-TAT-TGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---TT-------TT----------------C-----TTGT--T---T---T---------GCAT--------------T-----------GT-TT--G----G---CT-----------------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT-------ATTG--------------------AG--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCCAA--CT-ACT-AAT------TATA---TT-------TTG---------------------TCTT--A---TG--T---------ATGT--------------TGTACAAACACCAT-TA-----------CT-----------------TTGT-------TATGCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AAT----AAAA---TATTGTA-T-G-CAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-gatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-A------------------TT--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---TT-------TT
gi|2 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgGGGACCTTG-ATTGGAA-AAT----AAAA---AATTGTATT-G-TAT-TGT--A--TACCATA----ga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AAT----AAAA---GATTGCA-TAG-TA
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---TT-------TTaaacga
gi|3 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC------CATGT-ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TATA-T-G-TATGTTT--ACGAATCACA----TTAT-T-AT-TG---TA-ACTTTGT-TATG-C-CCCAGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtaTAT--------------T-----------AT-TG--T----AA--CT-----------------TTGT-------TATGCC-CC-AGTGGGACCTTG-ATTGGAA-AAT----AAAA---GAT-----T-G-TAT-TGT--ATAT---ATA----TTG--T-AT-TG---TATAgattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---TT-------TTtataaagttgga
gi|5 : T----AAAATTTGATT-TA-T-G-TAT-TGTTTACGAATCACA----TTAT-TCAT-TG---TA-ACTTTGTCTATGCC-CCCATTGGGACCTT---GACT--------GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTATTG-G-------------------TTTT--T---T---T---------GGTT--------------T------------T-TT--T----G---TT-----------------TTGT-------Tagattgtattg
gi|6 : G-G-----------GGC-----TTTT--A---T---TTTACAAATCGTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATGTC-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---TTCTATCTATTT-G-----------GTT-----TTTTTGG---T---T---------TTTT--------------T-----------GT-T---T----G---TT-----------------TTTT-------T-TGGG-GGGGGGGGGGCTTTT-ATTTACA-AAT---------------------------------CGTA---------TTAT-C-AT-TG---TA-ACTATGT-TATG-T-CCCATTGGGACttgagtga
gi|7 : G-G-----------GGC-----TTTT--A---T---TTACAAATC-GTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATG-T-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---TT-------TTGTGTAATAGAATGCGGCAAACATCTT--AAATT---T---------GTCT--------------T-----------ATGTA--T----G---TTAACGAATCACATTATTATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---TT-------TTT-T-----------GGC-----TTTT--A---T---TCAAT-----GTTTACAAATCACAT---T-----------AT-TA--TTGTAA---CT-----------------ATGT-------AATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGCATT-G-TAT-TGT--A
blockSeqs : T GG GG GTC A ATT T C A T C CA C TT T TTC T A AT AT G G G CTCCT A CTA TTGTGTAATAGAATGCGGCAAACATCTTAAATTTGTCTTATGTATGTTAACGAATCACATTATTA AACTTTG G A C CTTT TTTG GTATTG G TT TAC ATTAT C G . T G CCG TTGGAGACCT G
blockSeqs : T G T GTC A T C . . T C CA . . . TTC . . AT . . G A CTCCT T . TTTTGGCTTTTATTCAATGTTTACAAATCACATTATTATTGTAACT G . . . CTTT G GTATTG G . AAT ATTAT . G . T G CCG TTGGAGACCT G
blockSeqs : . G G GTC A T T . . . C . . . . A . . . . . . . T T . TTGTCTATGTATGTTTGACGTAATACACATTATTACTTGTAACT . . . . . G GCATAG G . AAT CATG . . . T C CC TTGACT .
blockSeqs : . G G GTC A T G . . . . . . . . . . . . . . . . C A . CTATCTATTTGGTTTTTTTGGTTTTTTTGTTTGTT . . . . . G GCATTG . . TGC CATG . . . . . C . .
blockSeqs : . G C GTC A T T . . . . . . . . . . . . . . . . T A . TTGTCTTATGTATGTTGTACAAACACCATTACT . . . . . T GTATG . . TGC ATTG . . . . . T
blockSeqs : . G C GTC A T T . . . . . . . . . . . . . . . . T G . CTATCTATTGGTTTTTTTGGTTTTTTTGTT . . . . . G GTATG . . AT TTAT . . . .
blockSeqs : . G G AT A T T . . . . . . . . . . . . . . . . T G . GTTTACGAACACGATTATTAGTGTACT . . . . . T TATGA . . AT
blockSeqs : . . G TA A T C . . . . . . . . . . . . . . . . T A . TTCTTGTTTTGCATTGTTTGGCT . . . . . A TATGA . . TA
blockSeqs : . . G TA . C C . . . . . . . . . . . . . . . . T G . . . . . . G ATATG . . T
blockSeqs : . . G AT . T C . . . . . . . . . . . . . . . . C . . . . . . . T GTAAC . .
blockSeqs : . . . . . . C . . . . . . . . . . . . . . . . . . . . . . G GTAAC . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . G TATG . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . G GG . .
blockSeqs : . . . . . . . . . . . TG
blockSeqs : . . . .
blockSeqs : . . .
blockSeqCons : CNTG****** *** CC* TTGGCT****
originalCons : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACA----TTAT-T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
finalCons : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---TT-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCACCNTG------T-AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGCT----TTGATTGGGAAAATAAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 11111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 1111111 1111 222222222222 1 111 1 2 1 3333 1
lowQualScore : 6 00 33 777 5 666 4 2 2 5 8 77 2 33 2 222 2 2 77 33 2 5 5 66666 3 555 44 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 5555555 0 3 2 2 0000 6666 99999999 8 33 6 3 444444444444 1 000 2 0 3 66 4444 0 5
lowQualScore : . .. .. ... . ... . . . . . .. . .. . ... . . .. .. . . . ..... . ... .. ........................................................................................................................ ....... . . . . .... .... ........ . .. . . ............ . ... . . . .. .... . .
lowQualScore : 7 00 88 999 6 555 0 9 9 3 0 33 7 77 7 000 9 9 99 99 9 7 7 33333 7 888 66 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 5555555 7 6 9 5 0000 8888 33333333 6 99 0 0 666666666666 4 000 0 0 3 22 0000 8 0
consensus : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCAC----CTTGT--AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAA
Reference ( family-3151 ) : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GTNT--------------T-----------AT-TA--T----G---CT-----------------TTGT-------TATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-TAT-TGT--ACGTACCAC----CNTGT--AT-TG---TATACTTTGT-TATGCC-CCCAGTGGGACCTTGG----CTTTGATTGGGAAAATAAAA
gi|1 : ATAAATATACAT-ACACAGGGG-CACTG-TCCCTTGATGTCTGAAATTG--TCTTG-AT-CA-TCAT-TGG--CT-TT--CCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-AATC----TTGTA---T--T-------TTG-G-----------GGC-----TTTT--A---T---T---------GCCT--------------T-----------AT-AA--T----G---CT-----------------TTGT-------TATGTC-CCCAGTGAGACCTTG-AGTGGCA-AAT----AAAA---GATTGTA-T-A-TAT-AAA--ACGTACCANAGGGCTTTT--AT-TGCCTTATGCTTTGT-TATGCT-CCCAGTGG------GG----CCTTGATT-GGAAAATAAAA
gi|10 : ATAAA-ATACAC-ACACAGGGG-CACTGGTTCCTTGATAT--------G--TATTGCAT-CA-TCATCTAG--CT-TTTTCCT-GGA--TGTTAAGGA-AG--ATAA--TCTAAA-CT-ACTGAATT----TTATA---TTGT-------TTA-C-----------GAA-----CACG--A---T--------------TAT--------------T-----------AG-TG--T----A---CT-----------------TTGT-------TATGCCGCTCAGTGGGACCTTG-A-TGG-A-AAT----AAAA---GATT--------TAT-TGT--
gi|11 : -TCAT-T-G--CTCTT--CCTTGG---TGT-AAGGG-AG--ATAAATTCCAAAGCT-ACT-GAAC----TTTTACTAT--T-------TTG----------------------TCT--A---TGTAT---------GTTTGACGTAATACACATT-----------AT-TACTT----GTAACT-----------------TTGTG------TATGCC-CCCAGTGGGACCTTGAATTGGCACAAT----AACA---G-TTG-----G-TAT-TGT--At
gi|12 : CAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTATT-G-TAT-TGT--AC
gi|13 : TGATGTCTGAAATTG--TACTG-AT-CA-TCGT-TAG--CT-TT--CTT-GG---TGT-GGAGG-AG--ATAA--T-CAA---------AATT----TTTCA---T--T-------TT----------------C-----TTGT--T---T---T---------GCAT--------------T-----------GT-TT--G----G---CT-----------------TTcttgaactttttgccaaaagtaactccttttaattatgatttgtttcagaactttattattgctctgcattctacatgtatatacc
gi|14 : AATATACAT-ACACAGGG--CACT----TCTTGAT-------ATTG--------------------AG--CT-T---CCT-GT---TGT-AAGG--AG--ATAA--TCCAA--CT-ACT-AAT------TATA---T--T-------TTG---------------------TCTT--A---TG--T---------ATGT--------------TGTACAAACACCAT-TA-----------CT-----------------TTGT-------TATGCC-CCactggcctgcatgtttacaaatcatattat
gi|15 : tat-CCCAGTGGGACATTG-ATTGGCA-AAT----AAAA---TATTGTA-T-G-CAag
gi|16 : CAGTGGGACATTG-ATTGGCA-AAT----AAAA---GATTGTA-T-G-gatctgctcttcctggtcagagggatgtttgcattcatatgtaacacagtcaagtataaagaagttttt
gi|17 : ATAAATATACAT-ACACAGGGG-CACTT-CCCCATGGTGTCTGAAATTG--TATTG-A------------------TT--GCT-GG---TGT-AAGGG-AG--ATAA--TCCAAA-CT-ACT-Aaagatcggctcttcctagtcagaggaatgtttgcatacaaatgtaacacagtcaagtataaagaagttttt
gi|19 : tAAATATACAT-ACACAGGGG-CACTG-ACCCTTGATGTCCGAAATTG--TAGTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---T
gi|2 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--T-------TT
gi|2 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC----CATGT--ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|20 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgGGGACCTTG-ATTGGAA-AAT----AAAA---AATTGTATT-G-TAT-TGT--A--TACCAga
gi|21 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAATta
gi|22 : ATAAATA--CAT-AGACTTGAG-CACTC-TCCCTTGATGTCTGAAAT
gi|23 : TG-ATTGGCA-AAT----AAAA---GATTGCA-TAG-TA
gi|3 : AAT-TACATTACACAGGG--CACTG-TTCCTTGAT-TATG-TATTG---ATTG-AT-CATTCATCTAGCACT-TT--CCT-GGTTCTGT-AAGGG-AGATATAA--TCCAAA-CTGACT-AATT----T--TA---T--T-------TTaaacga
gi|3 : gatGGCG-AATCTTTAAAA---TGTC-TA-T-GATATGTTT--ACG-ATCAC----CATGT--ATGTA---TGTACTTTGGGTATGCCGCCCAGTGGGACCTTGGAGACCTTTGATTGGGAAAATAAAcgtgtgtactaggaatgtgggcgaatctttaaaatgtctatgatatgtttacgatcaccatgtatgtatgtactttgggtatgccgcccagtgggaccttggagacctttgattgggaaaataaaga
gi|4 : gataattacattacacagggcactgttccttgattatgtattgattgatcattcatctagcactttcctggttctgtaagggagatataatccaaactgactaattttattttcgtgtgtactaggaatgtgATTG--TATTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-AAGGGAAG--ATCA--TCCAAA-CT-ACT-ga
gi|4 : TATA-T-G-TATGTTT--ACGAATCAC----ATTATT-AT-TG---TA-ACTTTGT-TATGCC-CC-AGTGGGACC----------TTGATT-GGAAAATAAAAgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacattattattgtaactttgttatgccccagtgggaccttgattggaaaataaaagattgtattgtatatatattgtattgtatatataaagttgga
gi|4 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtaTAT--------------T-----------AT-TG--T----AA--CT-----------------TTGT-------TATGCC-CC-AGTGGGACCTTG-ATTGGAA-AAT----AAAA---GAT-----T-G-TAT-TGT--ATATA-TA------TTGT--AT-TG---TATAgattgtattgtatatatattgtattgtatatataaagttgga
gi|5 : attgtattgatcatcattagctttcctggtgtaagggaagatcatccaaactactgtgtaatagattgtctagtgtaatagaatgccagcaaacatcttaaatttgtcttatgtatatatgtatgtttacgaatcacatATAGATATACAT--CACAGGG--CACTG-TTCCTT-AT------AATTGATTACTG-AAACA-TCAC-TAG--CT-TT--CT---G---TGT-AAGGG--G--ATAA--TCCAAA-CT-ACTAAATT----TTATA---T--T-------TTtataaagttgga
gi|5 : T----AAAATTTGATT-TA-T-G-TAT-TGTTTACGAATCAC----ATTATTCAT-TG---TA-ACTTTGTCTATGCC-CCCATTGGGACCTTGA----CT-------GGAAAATAAAAtgtcataatagaagcgtcaaaccatctaaaatttgatttatgtattgtttacgaatcacattattcattgtaactttgtctatgcccccattgggaccttgactggaaaataaaaagattgtattg
gi|6 : atagatatacatcacagggcactgttccttataattgattactgaaacatcactagctttctgtgtaaggggataatccaaactactaaattttatatttttgtcataatagaagcgtcaaaccatcTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-GAGGG-AG--ATA----TCAAA-CT-ACT-CATCTCCTTTGCA---T--TCTATCTATTG-G-------------------TTTT--T---T---T---------GGTT--------------T------------T-TT--T----G---TT-----------------TTGT-------Tagattgtattg
gi|6 : G-G-----------GGC-----TTTT--A---T---TTTACAAATCGTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATGTC-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAttttttgggggggggggggggggcttttattttacaaatcgtattatcattgtaactatgttatgtccccattgggacaaataaaatgtaactattgaacatgccattgagtga
gi|7 : tgaaattgtactgatcatcattagctttcctgtgtgagggagatatcaaactactcatctcctttgcattctatctattggtttttttggtttttttgttttgttttttttgggggggggggggTGAAATTG--TACTG-AT-CA-TCAT-TAG--CT-TT--CCT-GG---TGT-GAGGG-AG--ATAA--TCCAAA-CT-ACT-CATCTCCTTTGCA---T--TCTATCTATTT-G-----------GTT-----TTTTTGG---T---T---------TTTT--------------T-----------GT-T---T----G---TT-----------------TTTT-------T-TGGG-GGGGGGGGGGCTTTT-ATTTACA-AAT---------------------------------CGTATTAT----C------AT-TG---TA-ACTATGT-TATG-T-CCCATTGGGACttgagtga
gi|7 : G-G-----------GGC-----TTTT--A---T---TTACAAATC-GTAT--------------T-----------AT-CA--TTGTAA---CT-----------------ATGT-------TATG-T-CCCATTGGGA-----------CA-AAT----AAAA------TGTA-A-C-TAT-TGA--ACATGCCAaaataaaatgtaactattgaacatgccattgagtga
gi|8 : tgaaattgtactgatcatcattagctttcctggtgtgagggagataatccaaactactcatctcctttgcattctatctatttggtttttttggtttttttgtttgttttttttgggggggggATA-AT-ACACACGGG-CACTG-TTCCTTGATAT-TG-TATTG--CA-TG-AT-CA-TCAT-TAG--CT-TT--CCT--G---TGT-AAGGG-AG--ATAA--TC--AA-CT-ACT-AATT----TTATA---T--T-------TTGTGTAATAGAATGCGGCAAACATCTT--AAATT---T---------GTCT--------------T-----------ATGTA--T----G---TTAACGAATCACATTATTATTGTAACTTTGTATGCC-CCCAGTGGGACCTTG-ATTGGAA-AAT----AAAA---GATTGTA-ttgagtga
gi|9 : taATACAC-ACACAGGGGGCACTG-TCCCTTGATGTCGGAAATGG--TACTG-AT-C---------------------T-GG---TGT-GAGGG-AG--ACAA--TCCAAA----ACT-A--C----TTGTA---T--T-------TTT-T-----------GGC-----TTTT--A---T---TCAAT-----GTTTACAAATCACAT---T-----------AT-TA--TTGTAA---CT-----------------ATGT-------AATGCC-CCCAGTGGGACCTTG-ATTGGCA-AAT----AAAA---GATTGCATT-G-TAT-TGT--A
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TACTTCAACGGGGCAGGTTCCCACATGTACAATGAGGCTGCTGATCTACATCAGATTAGTGAGAAAGAAACTCTA
Unaligned ( gi|24 ): TGTAACACAGTCAAGTATAAAGAAGTTTTT