lowQualScore : 111111111111111111111111 11111111111111
lowQualScore : 333333 333333333333333 222 11111 11 6666666666666666666 2222 33333 222222 77777777777777777 2222222222222222 1 1 1 2 11 000000000000000000000000 1 222222 333 00000000000000
lowQualScore : 1 888888 1 7 7 444444444444444 8 111 99999 66 6 9 1111111111111111111 0 5555 1 8 4 8 00000 0 4 777777 9 55555555555555555 6 4 3333333333333333 0 3 2 1 4 0 3 0 6 3 2 4 2 2 88 555555555555555555555555 1 3 777777 55 999 0 00000000000000 4 6 1
lowQualScore : . ...... . . . ............... . ... ..... .. . . ................... . .... . . . . ..... . . ...... . ................. . . ................ . . . . . . . . . . . . . . .. ........................ . . ...... .. ... . .............. . . .
lowQualScore : 0 333333 0 3 3 333333333333333 3 333 77777 00 5 8 0000000000000000000 8 0000 0 3 0 3 33333 7 7 333333 0 00000000000000000 7 0 8888888888888888 0 2 5 0 0 7 3 7 7 7 5 0 5 5 00 555555555555555555555555 0 3 333333 00 000 7 77777777777777 7 7 0
consensus : ACTTCGTCGA------TGGCAGATGTCG-TA--TCT-GGCGCTACACG-NCGGATCNT-C-ACTTGACAACAAAGTGTCNAACAACAG---CCCGATGGGCAGNGCACCGTTCGGAA-TCNCCCACCGAGTGT-TNCTGTTATGTGTGGCGAACGTTGCG-C-TGTTTTGGCTTTAA--C-C---A--CAA---AAGAANTGTCGNCT-C-AT-CA---AT-CGTGTGACCCGTCAGANATGACCGCTAACGAAGCAGGA-TGGAGNTACTNTTGCCCTGACGGTATGTTNTCTNTCAACCC--TTTTTGAGAACTGGAGCTTCGTTCAACTT-CC-TT---GGNCATCACGCACGT-CGCGCATA-AATAT--CGC--ANGACTTTGGTGTGTGCT
Reference ( gi|3 ) : ACTTTATCAA------TGACAGATGTCG-TA--TCTCGGAGCTTCACG-ATGGATCTT-C-ACTTACCAACAAAGTGTCGAATAACAA---CTCAATGGGCAGAACACCATTCGGAAATCTCTCTCTGTGTGT-TTCTGCTATGTGTGGTGAACATTGTGGCATGTTTTGGTTTTAATCCTC---A--CAA---AAGAAATGTCGCCT-T-AT-CA---AT-CTTGTGACTCATCAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-T-CGCGCAT--AATA--------AAGAGTTTGATGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGAT-GATGTC--TAAATCT------TTCACG-GCTGACCGGAC-ACTGAACAACAAAGTGTCCAGCGTCGT---TCCGATGA-CAGAG-GTCGCTGCCAGATCGTCCACCGAGTGT-TCC-GTTATGTGTGGCGATGATTGCAGC-TGTTTTGGCTTTAA--CTC------CAATGTGA-AAATGT-GTCG-T-ATCCATGCAT-CGTGTGAC
gi|4 : tTTTGTCAA------AGGCAGA-ATTGAGA--TCTTGGCGTTACACG-CTGGATCCT-CCACTTGACAACAAAGTTTCGAATAACAGT--CTCA-TGG-CGATACACCCTTCGGAA-TCCCTCATTGAGTGT-GG-TGTTAAGTGTGGTGAACTTTGTG-CATGCTTTGGCTTCAATCC-C---AGTCAA---AAGAAGTGTCACAT-CCAT-AA---AT-CATGTGACCGATCAGACATGACTGTTAATGAAGCAGGA-TGGAGTTACTTTTGCCTTGACGGTATGTTTTCTGT--AC------TTTG-----TG----------CAACTT-CCATA---GGCCATTACGCACAG-CGTGCATAAAATATTGCATT-ATGACTTTGGTGTGTGc
gi|15 : TTTGTCAG------TGGCAGATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACAG---CCTGAT-GACAACACACCATTCGGAAtct
gi|9 : ACAAAGTGTCTAACA-CAGGTCTTC--TAGG-AGAGTACCATTCGGAA---TCCCTCGGTGTGTGTTCTTCTATGTGTGGTGGACGTT-TTCCTTTTTTTGGGTTTAA--CGCAAAA--CAG---AAGAACTGTCGACTAC-AC-CA---ATACCC----CCCAACAGAGATGGATGCGAATGAA-----AATGGAt
gi|12 : tttgtcaaacgcacaaatatcgaacttttatagaatggacccgaaatataaagT-C-AT-CA---AT-CGTGTGACTCGTCAGAAATGACCGCTAACGAAGCAGGA-TGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACAC-TACGCGCATA-AATA--------AAGAGTTTGATGTGTGCtgg
gi|13 : tGTTCAACTT-CT-TTTAAGGGCATCACACATGT-TGTGCATA-AATATGTTGCATAGGACTTTGGTGTAAGCTc
12 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|2 ): ACTNTGTTCATGACAACTTCCTTCGGCCATCATGCACTGCGTGTATGAATATATTGCACAGGACTTTGATTTAGGTCTTTTCACAACCTTGTTTTGTGTGTATGGCCTAGTGAATTTCCCCCAAAATATAATCCTACATTCAATAGCTAAAATTTAAGAACAAAGAGCTGATTTCAAATTATGAATGCTATGTAAACAGATTTGTTTCTAATACGAAATGATAGCACATTGAGTTTTTTCTTTTCGTTTAGTAAATGAGCATCGCATGCTAGGAACAATGTGGACGATTTCATCTTTATAGATTAAAGGGGTTGAATGTTGAAAATATACTCTTTAACAAGCCTGAGTTTTTGTGTATATTAAATGAAAATAAATTCATTGAACTAGAGTCTCTGCATGGTATAAATTTATTGAACCAATCTTAACTG
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG
Alignments
lowQualScore : 222222 111111 33 1 1 1 1 1111 111 11 3333 555555555555 2222 111 111 1 111111111111111 222 11 11 77777777777
lowQualScore : 2 2 3 222222 3 444444 22 2 0 4 55 0 1 0 0 1 6 8 3 3 6 1111 55 88 1 2 333 4 666 2 44 0000 0 777777777777 1111 1 33 777 3 4 777 1 3 0 1 1 1 1 6 999999999999999 4 8 8 222 1 99 11 11111111111 1
lowQualScore : . . . ...... . ...... .. . . . .. . . . . . . . . . . .... .. .. . . ... . ... . .. .... . ............ .... . .. ... . . ... . . . . . . . . ............... . . . ... . .. .. ........... .
lowQualScore : 0 0 5 222222 2 222222 55 5 2 0 22 0 0 0 0 0 0 0 2 2 4 6666 44 88 0 0 555 0 555 0 22 2222 2 555555555555 2222 0 55 222 2 2 555 0 5 0 0 0 0 0 7 333333333333333 2 0 0 000 0 00 88 44444444444 0
consensus : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACAG-TCCGATGGGCAGAA--CACCGTTCGG-AATCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATC-C-C---A--CAA----AAGAAGTGTCGCNT-C-ATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCAT-AAATAT-TTGCGC---AGGACTTTGATGTGTGCT
Reference ( family-3130 ) : ACTTCGTCGATGGC----A-GATGTCG-TA--TCT-GGCGCTACACGNCGGA-TCNT-C-ACTTGACAACAAAGTGTCNAACAACAG-CCCGATGGGCAGNG--CACCGTTCGG-AATCNCCCACCGAGTGTTNCTGTTATGTGTGGCGAACG-TTGC-GC-TGTTTTGGCTTTAA---C-C---A--CAA----AAGAANTGTCGNCT-C-ATCAATCGTGTGACCCGT---CAGANATGACCGCTAACGAAGCAGG-ATGGAGNTACTNTTGCCCTGACGGTATGTTNTCTNTCAACCC--TTTTTGAGAACTGGAGCTTCGTTCAACTT-CC-TT---GGNCATCACGCACGTCGCGCAT-AAATAT----CGC---ANGACTTTGGTGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGATGATGTC--TAAATCT------TTCACGGCTGA-CCGGAC-ACTGAACAACAAAGTGTCCAGCGTCGT-TCCGAT-GACAGAGGTCGCTG-CCAG--ATCGTCCACCGAGTGTTCC-GTTATGTGTGGCGATGA-TTGCAGC-TGTTTTGGCTTTAA---C-T---C--CAATGTGAAAATGTGTCGTATCC-ATGCATCGTGTGACC
gi|12 : tT-C-ATCAATCGTGTGACTCGT---CAGAAATGACCGCTAACGAAGCAGG-ATGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACACTACGCGCAT-AAATA-----------AAGAGTTTGATGTGTGC
gi|13 : tTTGTTCAACTT-CT-TTTAAGGGCATCACACATGTTGTGCAT-AAATATGTTGCAT---AGGACTTTGGTGTAAGCTc
gi|15 : TTTGTCAGTGGC----A-GATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACAG-CCTGAT-GACAACA--CACCATTCGG-AATtcaaaactgcattttgtttgaaacaatatatgtcccagaaaacattttccaaacaatataaccaatgttcaaaatttaa
gi|2 : CAACTT-CC-TTC--GGCCATCATGCACTGCGTGTAT-GAATATATTGCAC---AGGACTTTGAT
gi|3 : actntgttcatgaACTTTATCAATGAC----A-GATGTCG-TA--TCTCGGAGCTTCACGATGGA-TCTT-C-ACTTACCAACAAAGTGTCGAATAACAA-CTCAATGGGCAGAA--CACCATTCGGAAATCTCTCTCTGTGTGTTTCTGCTATGTGTGGTGAACA-TTGTGGCATGTTTTGGTTTTAATCCT-C---A--CAA----AAGAAATGTCGCCT-T-ATCAATCTTGTGACTCAT---CAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-TCGCGCAT--AATA-----------AAGAGTTTGATGTGTGCTttaggtcttttcacaaccttgttttgtgtgtatggcctagtgaatttcccccaaaatataatcctacattcaatagctaaaatttaagaacaaagagctgatttcaaattatgaatgctatgtaaacagatttgtttctaatacgaaatgatagcacattgagttttttcttttcgtttagtaaatgagcatcgcatgctaggaacaatgtggacgatttcatctttatagattaaaggggttgaatgttgaaaatatactctttaacaagcctgagtttttgtgtatattaaatgaaaataaattcattgaactagagtctctgcatggtataaatttattgaaccaatcttaactg
gi|4 : TTTGTCAAAGGC----A-GA-ATTGAGA--TCTTGGCGTTACACGCTGGA-TCCT-CCACTTGACAACAAAGTTTCGAATAACAG-TCTCATGG-CGATA--CACCCTTCGG-AATCCCTCATTGAGTGTGG-TGTTAAGTGTGGTGAACT-TTGT-GCATGCTTTGGCTTCAATC-C-C---AGTCAA----AAGAAGTGTCACAT-CCATAAATCATGTGACCGAT---CAGACATGACTGTTAATGAAGCAGG-ATGGAGTTACTTTTGCCTTGACGGTATGTTTTCTGT-----------------------ACTTTGTGCAACTT-CCATA---GGCCATTACGCACAGCGTGCATAAAATAT----TGCATTATGACTTTGGTGTGTG
gi|9 : ACAAAGTGTCTAACA-CAGGTCTTCTAGG-AGAG--TACCATTCGG-AATCCCTCGGTGTGTGTT-CTTCTATGTGTGGTGGACGTTTTC-CT-TTTTTTGGGTTTAA---CGCAAAA--CAG----AAGAACTGTCGACTAC-ACCAAT------ACCCCCCAACAGAGATGGATGCGAATGAAAATGG-ATGGtct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG
Alignments
lowQualScore : 222222 111111 1 1 1 1 111 2 11 1 11 1 1 33333333333 2 111 1 11 1 222 555555555
lowQualScore : 1 222222 3 444444 2 2 0 1 55 0 0 0 0 88 444 3 3 1 11 55 88 0 44 1 3 0 3 44 9 9 0 7 0 33333333333 0 11 4 3 4 777 0 1 0 6 88 7 3 4 8 8 222 1 99 3 0 999999999 1
lowQualScore : . ...... . ...... . . . . .. . . . . .. ... . . . .. .. .. . .. . . . . .. . . . . . ........... . .. . . . ... . . . . .. . . . . . ... . .. . . ......... .
lowQualScore : 0 222222 2 222222 8 5 2 0 22 0 8 0 0 88 000 2 2 0 00 44 88 2 55 0 2 8 2 22 0 8 2 0 0 22222222222 2 22 0 2 2 555 8 0 0 7 33 3 3 2 0 0 000 4 88 8 8 888888888 4
consensus : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGAT-GGCAGAA--CACCGTTCGG-AATCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
Reference ( family-3130 ) : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGGGCAGAA--CACCGTTCGG-AATCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---AAAGAAGTGTCGCNT-CATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATAT-TTGCG-CAGGACTTTGATGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGATGATGTC--TAAATCT------TTCACGGCTGA-CCGGAC-ACTGAACAACAAAGTGTCCAGCGTCG---TTCCGAT-GACAGAGGTCGCTG-CCAG--ATCGTCCACCGAGTGTTCC-GTTATGTGTGGCGATGA-TTGCAGC-TGTTTTGGCTTTAACTC-C---A---ATGTGAAAATGTGTCGTATCCATGCATCGTGTGACC
gi|12 : tT-CATCAATCGTGTGACTCGT---CAGAAATGACCGCTAACGAAGCAGG-ATGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACACTACGCGCATAAATA---------AAGAGTTTGATGTGTGC
gi|13 : tTTGTTCAACTT-CT-TTTAAGGGCATCACACATGTTGTGCATAAATATGTTGCA-TAGGACTTTGGTGTAAGCTc
gi|15 : TTTGTCAGTGGC----A-GATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACA---GCCTGAT-GACAACA--CACCATTCGG-AATtcaaaactgcattttgtttgaaacaatatatgtcccagaaaacattttccaaacaatataaccaatgttcaaaatttaa
gi|2 : CAACTT-CC-TTC--GGCCATCATGCACTGCGTGTATGAATATATTGCA-CAGGACTTTGAT
gi|3 : actntgttcatgaACTTTATCAATGAC----A-GATGTCG-TA--TCTCGGAGCTTCACGATGGA-TCTT-C-ACTTACCAACAAAGTGTCGAATAACA---ACTCAATGGGCAGAA--CACCATTCGGAAATCTCTCTCTGTGTGTTTCTGCTATGTGTGGTGAACA-TTGTGGCATGTTTTGGTTTTAATCCTC---A--CA---AAAGAAATGTCGCCT-TATCAATCTTGTGACTCAT---CAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-TCGCGCAT-AATA---------AAGAGTTTGATGTGTGCTttaggtcttttcacaaccttgttttgtgtgtatggcctagtgaatttcccccaaaatataatcctacattcaatagctaaaatttaagaacaaagagctgatttcaaattatgaatgctatgtaaacagatttgtttctaatacgaaatgatagcacattgagttttttcttttcgtttagtaaatgagcatcgcatgctaggaacaatgtggacgatttcatctttatagattaaaggggttgaatgttgaaaatatactctttaacaagcctgagtttttgtgtatattaaatgaaaataaattcattgaactagagtctctgcatggtataaatttattgaaccaatcttaactg
gi|4 : TTTGTCAAAGGC----A-GA-ATTGAGA--TCTTGGCGTTACACGCTGGA-TCCT-CCACTTGACAACAAAGTTTCGAATAACA---GTCTCAT-GGCGATA--CACCCTTCGG-AATCCCTCATTGAGTG-TGGTGTTAAGTGTGGTGAACT-TTGT-GCATGCTTTGGCTTCAATCC-C---AGTCA---AAAGAAGTGTCACATCCATAAATCATGTGACCGAT---CAGACATGACTGTTAATGAAGCAGG-ATGGAGTTACTTTTGCCTTGACGGTATGTT--------------TT--------CT-GTACTTTGTGCAACTT-CCATA---GGCCATTACGCACAGCGTGCATAAA-ATATTGCATTATGACTTTGGTGTGTG
gi|9 : ACAAAGTGTC---TAACACAGGTCTTCTAGG-AGAG--TACCATTCGG-AATCCCTCGGTGTGTGTT-CTTCTATGTGTGGTGGACGTTTTC--CTTTTTTTGGGTTTAA-CG-CAAAA--CA---GAAGAACTGTCGACTACACCAAT------ACCCCCCAACAGAGATGGATGCGAATGAAAATGG-ATGGtct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG
Alignments
lowQualScore : 222222 111111 1 1 1 1 111 11 1 11 1 1 33333333333 111 1 11 1 222 222222222
lowQualScore : 1 222222 3 444444 2 2 0 1 55 0 0 0 0 88 444 3 8 1 11 55 0 8 0 44 1 3 0 3 44 9 9 0 7 0 33333333333 0 11 8 3 4 777 0 1 0 6 88 7 3 4 8 8 222 1 99 3 0 777777777 1
lowQualScore : . ...... . ...... . . . . .. . . . . .. ... . . . .. .. . . . .. . . . . .. . . . . . ........... . .. . . . ... . . . . .. . . . . . ... . .. . . ......... .
lowQualScore : 0 222222 2 222222 8 5 2 0 22 0 8 0 0 88 000 2 0 0 00 44 8 0 2 55 0 2 8 2 22 0 8 2 0 0 22222222222 2 22 2 2 2 555 8 0 0 7 33 3 3 2 0 0 000 4 88 8 8 666666666 4
consensus : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCGTTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
Reference ( family-3130 ) : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCGTTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGATGATGTC--TAAATCT------TTCACGGCTGA-CCGGAC-ACTGAACAACAAAGTGTCCAGCGTCG---TTCCGATGA-CAGAGGTCGCTG-CCAG-A-TCGTCCACCGAGTGTTCC-GTTATGTGTGGCGATGA-TTGCAGC-TGTTTTGGCTTTAACTC-C---A---ATGTGAAAATGTGTCGTATCCATGCATCGTGTGACC
gi|12 : tTTCATCAATCGTGTGACTCGT---CAGAAATGACCGCTAACGAAGCAGG-ATGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACACTACGCGCATAAATA---------AAGAGTTTGATGTGTGC
gi|13 : TTGTTCAACTT-CT-TTTAAGGGCATCACACATGTTGTGCATAAATATGTTGCA-TAGGACTTTGGTGTAAGCTc
gi|15 : TTTGTCAGTGGC----A-GATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACA---GCCTGATGA-CAACA--CACCATTCGGAA-Ttcaaaactgcattttgtttgaaacaatatatgtcccagaaaacattttccaaacaatataaccaatgttcaaaatttaa
gi|2 : CAACTT-CC-TTC--GGCCATCATGCACTGCGTGTATGAATATATTGCA-CAGGACTTTGAT
gi|3 : actntgttcatgaACTTTATCAATGAC----A-GATGTCG-TA--TCTCGGAGCTTCACGATGGA-TCTT-C-ACTTACCAACAAAGTGTCGAATAACA---ACTCAATGGGCAGAA--CACCATTCGGAAATCTCTCTCTGTGTGTTTCTGCTATGTGTGGTGAACA-TTGTGGCATGTTTTGGTTTTAATCCTC---A--CA---AAAGAAATGTCGCCT-TATCAATCTTGTGACTCAT---CAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-TCGCGCAT-AATA---------AAGAGTTTGATGTGTGCTttaggtcttttcacaaccttgttttgtgtgtatggcctagtgaatttcccccaaaatataatcctacattcaatagctaaaatttaagaacaaagagctgatttcaaattatgaatgctatgtaaacagatttgtttctaatacgaaatgatagcacattgagttttttcttttcgtttagtaaatgagcatcgcatgctaggaacaatgtggacgatttcatctttatagattaaaggggttgaatgttgaaaatatactctttaacaagcctgagtttttgtgtatattaaatgaaaataaattcattgaactagagtctctgcatggtataaatttattgaaccaatcttaactg
gi|4 : TTTGTCAAAGGC----A-GA-ATTGAGA--TCTTGGCGTTACACGCTGGA-TCCT-CCACTTGACAACAAAGTTTCGAATAACA---GTCTCATGG-CGATA--CACCCTTCGGAA-TCCCTCATTGAGTG-TGGTGTTAAGTGTGGTGAACT-TTGT-GCATGCTTTGGCTTCAATCC-C---AGTCA---AAAGAAGTGTCACATCCATAAATCATGTGACCGAT---CAGACATGACTGTTAATGAAGCAGG-ATGGAGTTACTTTTGCCTTGACGGTATGTT--------------TT--------CT-GTACTTTGTGCAACTT-CCATA---GGCCATTACGCACAGCGTGCATAAA-ATATTGCATTATGACTTTGGTGTGTG
gi|9 : ACAAAGTGTC---TAACACAGGTCTTCTAG-GAGAG--TACCATTCGGAA-TCCCTCGGTGTGTGTT-CTTCTATGTGTGGTGGACGTTTTC--CTTTTTTTGGGTTTAA-CG-CAAAA--CA---GAAGAACTGTCGACTACACCAAT------ACCCCCCAACAGAGATGGATGCGAATGAAAATGG-ATGGtct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG
Alignments
lowQualScore : 222222 111111 1 1 1 1 111 11 1 11 1 1 33333333333 111 1 11 1 222 222222222
lowQualScore : 1 222222 3 444444 2 2 0 1 55 0 0 0 0 88 444 3 8 1 11 55 0 8 0 44 1 3 0 3 44 9 9 0 7 0 33333333333 0 11 8 3 4 777 0 1 0 6 88 7 3 4 8 8 222 1 99 3 0 777777777 1
lowQualScore : . ...... . ...... . . . . .. . . . . .. ... . . . .. .. . . . .. . . . . .. . . . . . ........... . .. . . . ... . . . . .. . . . . . ... . .. . . ......... .
lowQualScore : 0 222222 2 222222 8 5 2 0 22 0 8 0 0 88 000 2 0 0 00 44 8 0 2 55 0 2 8 2 22 0 8 2 0 0 22222222222 2 22 2 2 2 555 8 0 0 7 33 3 3 2 0 0 000 4 88 8 8 666666666 4
consensus : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCGTTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
Reference ( family-3130 ) : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCGTTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGATGATGTC--TAAATCT------TTCACGGCTGA-CCGGAC-ACTGAACAACAAAGTGTCCAGCGTCG---TTCCGATGA-CAGAGGTCGCTG-CCAG-A-TCGTCCACCGAGTGTTCC-GTTATGTGTGGCGATGA-TTGCAGC-TGTTTTGGCTTTAACTC-C---A---ATGTGAAAATGTGTCGTATCCATGCATCGTGTGACC
gi|12 : tTTCATCAATCGTGTGACTCGT---CAGAAATGACCGCTAACGAAGCAGG-ATGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACACTACGCGCATAAATA---------AAGAGTTTGATGTGTGC
gi|13 : TTGTTCAACTT-CT-TTTAAGGGCATCACACATGTTGTGCATAAATATGTTGCA-TAGGACTTTGGTGTAAGCTc
gi|15 : TTTGTCAGTGGC----A-GATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACA---GCCTGATGA-CAACA--CACCATTCGGAA-Ttcaaaactgcattttgtttgaaacaatatatgtcccagaaaacattttccaaacaatataaccaatgttcaaaatttaa
gi|2 : CAACTT-CC-TTC--GGCCATCATGCACTGCGTGTATGAATATATTGCA-CAGGACTTTGAT
gi|3 : actntgttcatgaACTTTATCAATGAC----A-GATGTCG-TA--TCTCGGAGCTTCACGATGGA-TCTT-C-ACTTACCAACAAAGTGTCGAATAACA---ACTCAATGGGCAGAA--CACCATTCGGAAATCTCTCTCTGTGTGTTTCTGCTATGTGTGGTGAACA-TTGTGGCATGTTTTGGTTTTAATCCTC---A--CA---AAAGAAATGTCGCCT-TATCAATCTTGTGACTCAT---CAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-TCGCGCAT-AATA---------AAGAGTTTGATGTGTGCTttaggtcttttcacaaccttgttttgtgtgtatggcctagtgaatttcccccaaaatataatcctacattcaatagctaaaatttaagaacaaagagctgatttcaaattatgaatgctatgtaaacagatttgtttctaatacgaaatgatagcacattgagttttttcttttcgtttagtaaatgagcatcgcatgctaggaacaatgtggacgatttcatctttatagattaaaggggttgaatgttgaaaatatactctttaacaagcctgagtttttgtgtatattaaatgaaaataaattcattgaactagagtctctgcatggtataaatttattgaaccaatcttaactg
gi|4 : TTTGTCAAAGGC----A-GA-ATTGAGA--TCTTGGCGTTACACGCTGGA-TCCT-CCACTTGACAACAAAGTTTCGAATAACA---GTCTCATGG-CGATA--CACCCTTCGGAA-TCCCTCATTGAGTG-TGGTGTTAAGTGTGGTGAACT-TTGT-GCATGCTTTGGCTTCAATCC-C---AGTCA---AAAGAAGTGTCACATCCATAAATCATGTGACCGAT---CAGACATGACTGTTAATGAAGCAGG-ATGGAGTTACTTTTGCCTTGACGGTATGTT--------------TT--------CT-GTACTTTGTGCAACTT-CCATA---GGCCATTACGCACAGCGTGCATAAA-ATATTGCATTATGACTTTGGTGTGTG
gi|9 : ACAAAGTGTC---TAACACAGGTCTTCTAG-GAGAG--TACCATTCGGAA-TCCCTCGGTGTGTGTT-CTTCTATGTGTGGTGGACGTTTTC--CTTTTTTTGGGTTTAA-CG-CAAAA--CA---GAAGAACTGTCGACTACACCAAT------ACCCCCCAACAGAGATGGATGCGAATGAAAATGG-ATGGtct
blockSeqs : T A T GAGA A C A CA A . C AC CAG G G C . AT A TC T T T T GT G A T T AAAACA CC T G A CAA A A G TT T G T . A TAA G GT A TATTGCATT G
blockSeqs : T A T GTA C A T AT . . . GA . A . A . AT . AT A T G T A . A T . AGTCA CA C T A . T . . . . . A . . C C TG G TGTTGCAT G
blockSeqs : A A . GTA T C A CT . . . GA . C . T . CT . GG T . . T T . T . . ACA AC A A C . G . T . . . T AG A TATTGCAC A
blockSeqs : . . T . A . AT . . . . . . C T . . T
blockSeqCons : ** AT TGTTGCAT*
originalCons : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCGTTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
finalCons : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCATTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATGTTGCAT-AGGACTTTGATGTGTGCT
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG
Alignments
lowQualScore : 222222 111111 1 1 1 1 111 11 1 11 1 1 33333333333 111 1 11 1 222 333333333
lowQualScore : 1 222222 3 444444 2 2 0 1 55 0 0 0 0 88 444 3 8 1 11 0 8 0 44 1 3 0 3 44 9 9 0 7 0 33333333333 0 11 8 3 4 777 0 1 0 6 88 7 3 4 8 8 222 1 99 3 0 000000000 1
lowQualScore : . ...... . ...... . . . . .. . . . . .. ... . . . .. . . . .. . . . . .. . . . . . ........... . .. . . . ... . . . . .. . . . . . ... . .. . . ......... .
lowQualScore : 0 222222 2 222222 8 5 2 0 22 0 8 0 0 88 000 2 0 0 00 6 0 2 55 0 2 8 2 22 0 8 2 0 0 22222222222 2 22 2 2 2 555 8 0 0 7 33 3 3 2 0 0 000 4 88 8 8 444444444 4
consensus : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCATTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATATTGCA-TAGGACTTTGATGTGTGCT
Reference ( family-3130 ) : ACTTTGTCAANGGC----A-GATGTCG-TA--TCTCGGCGCTNCACGNCGGA-TCTT-C-ACTTGACAACAAAGTGTCGAATAACA---GTCCGATGG-CAGAA--CACCATTCGGAA-TCCCTCGCTGNGTGTTNCTGCTATGTGTGGTGAACG-TTGCGGCATGTTTTGGCTTTAATCC-C---A--CA---GAAGAAGTGTCGCNTCCATCAATCGTGTGACCCGT---CAGAAATGACCGCNAACGAAGCAGG-ATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAACTT-CC-TT---GGCCATCACGCACNNCGCGCATAAATATGTTGCA-TAGGACTTTGATGTGTGCT
gi|11 : ACTTCATCGAGAGCCGTGATGATGTC--TAAATCT------TTCACGGCTGA-CCGGAC-ACTGAACAACAAAGTGTCCAGCGTCG---TTCCGATGA-CAGAGGTCGC--TGCCAGA-TCGTCCACCGAGTGTTCC-GTTATGTGTGGCGATGA-TTGCAGC-TGTTTTGGCTTTAACTC-C---A---ATGTGAAAATGTGTCGTATCCATGCATCGTGTGACC
gi|12 : tTTCATCAATCGTGTGACTCGT---CAGAAATGACCGCTAACGAAGCAGG-ATGGAGGTACTATTGCCCTGACGGTATGTTGTCTCTCAACCC--TTTTTGAGAACT-GAGCTTCGTTCAATTTCCC-TT---GATCATCACACACTACGCGCATAAATA---------AAGAGTTTGATGTGTGC
gi|13 : TTGTTCAACTT-CT-TTTAAGGGCATCACACATGTTGTGCATAAATATGTTGCA-TAGGACTTTGGTGTAAGCTc
gi|15 : TTTGTCAGTGGC----A-GATGTCG-TA--TCTAGGCGCTATACGCAGGAATCTT-C-ACTTGACAACAAATTGTCACATAACA---GCCTGATGA-CAACA--CACCATTCGGAA-Ttcaaaactgcattttgtttgaaacaatatatgtcccagaaaacattttccaaacaatataaccaatgttcaaaatttaa
gi|2 : CAACTT-CC-TTC--GGCCATCATGCACTGCGTGTATGAATATATTGCA-CAGGACTTTGAT
gi|3 : actntgttcatgaACTTTATCAATGAC----A-GATGTCG-TA--TCTCGGAGCTTCACGATGGA-TCTT-C-ACTTACCAACAAAGTGTCGAATAACA---ACTCAATGGGCAGAA--CACCATTCGGAAATCTCTCTCTGTGTGTTTCTGCTATGTGTGGTGAACA-TTGTGGCATGTTTTGGTTTTAATCCTC---A--CA---AAAGAAATGTCGCCT-TATCAATCTTGTGACTCAT---CAGAAATGACCGCAAACGAAGCAGGAATGGAGGTACTTTTGCCCTGACGGTATGTTGTCTCTCAACCCTTTTTTTGAGAACTGGAGCTTAGTTCAATTT-CC-TT---GATCATCACACAC-TCGCGCAT-AATA---------AAGAGTTTGATGTGTGCTttaggtcttttcacaaccttgttttgtgtgtatggcctagtgaatttcccccaaaatataatcctacattcaatagctaaaatttaagaacaaagagctgatttcaaattatgaatgctatgtaaacagatttgtttctaatacgaaatgatagcacattgagttttttcttttcgtttagtaaatgagcatcgcatgctaggaacaatgtggacgatttcatctttatagattaaaggggttgaatgttgaaaatatactctttaacaagcctgagtttttgtgtatattaaatgaaaataaattcattgaactagagtctctgcatggtataaatttattgaaccaatcttaactg
gi|4 : TTTGTCAAAGGC----A-GA-ATTGAGA--TCTTGGCGTTACACGCTGGA-TCCT-CCACTTGACAACAAAGTTTCGAATAACA---GTCTCATGG-CGATA--CACCCTTCGGAA-TCCCTCATTGAGTG-TGGTGTTAAGTGTGGTGAACT-TTGT-GCATGCTTTGGCTTCAATCC-C---AGTCA---AAAGAAGTGTCACATCCATAAATCATGTGACCGAT---CAGACATGACTGTTAATGAAGCAGG-ATGGAGTTACTTTTGCCTTGACGGTATGTT--------------TT--------CT-GTACTTTGTGCAACTT-CCATA---GGCCATTACGCACAGCGTGCATAAA-ATATTGCATTATGACTTTGGTGTGTG
gi|9 : ACAAAGTGTC---TAACACAGGTCTTCTAG-GAGAG--TACCATTCGGAA-TCCCTCGGTGTGTGTT-CTTCTATGTGTGGTGGACGTTTTC--CTTTTTTTGGGTTTAA-CG-CAAAA--CA---GAAGAACTGTCGACTACACCAAT------ACCCCCCAACAGAGATGGATGCGAATGAAAATGG-ATGGtct
11 sequences could not be aligned to this reference sequence:
Unaligned ( gi|1 ): TTGACATTGAATTCTGGCTGCTGCGGCCCTCTTGTTCTGACATCAGCGTATGTTCGAGGAAGCGTCTTCTTCTAACAGCCTCGGCGGAGTCTCCTGTTGCGCAACCGCCTTTCTATAGCTGGCACTTTCACAATGACACTGCGCCAGAGCAATTGCGGGTATCTGATACGATCTATGAACACATCCGCATAACTCCAACCCCACTGCTTACATCTCTCTAACGAAAACCCTGATAGAAAATATAGATTACACGATATTTCTCTTCCTTTTATACATTTGTAAACCTAAACAAATACTCGCATATTCGCCTTAATTACTCAGAATACTTGTCGACCATTCTTATGGATGAAAGTAAAGGTGTACATCTGTGAACATCTTGTCACGCTGTCATTAATCTCAGCGCGGTATTTATAGCTGATATTAGCATGTATAAATGAAACCCAAGGCTCAGTACTTACATAAGGTCTA
Unaligned ( gi|5 ): GTGCGCATGGATATATAGAACTGGGCCTTTTCACATTCTTGCTTTGTTTGATATGACGTATATATTCCAGAAAACGTTCTATGAACAATACAATCCTCTATTCAACAGATAATATACATGACAAAGAGATAATAATTATTTCAAATGATGGGCACTACATAAACCGATATGTTCGTTTTACAAAATGATAAGAAAAGATCTATTCACATGAGGTTTTCTTTTCATATTTGTGAACGAGCATTGCATCAACGAGTTCAGTGTTGATTAGAGGAGTTGATGGTTAAGACATACTCATGCCCAGGTATCTGCAACGGTGGAATTACATATATATAT
Unaligned ( gi|6 ): ATTGGATTTTGGTGTGGGCCTCTTGTTTGAAATAGCGTATGTTCCAGGAAGCGTTCTTTAAACAGTGGAATTCTTTGCTCAAAAGCAGATTTAAAACATGGAGAGCATGTTTAAATTATGAACATGATATAAACCGATGTGTACATTTTACGAAATGATAGAAAAAATATATATTCACATATTTTTTTCCTTTTATATTTGTAAACTAAACAAATATCGCATATTCGCTAATTACTAGATCATTGCTAAGTGAAGAAGGTTAGGACATGCTCCATATCTCAGCATATAGTATACATGTATAAATGAACCAGAGGCTATATACATGTAGGCTA
Unaligned ( gi|7 ): ATATTAGTATATGTCTTTGTTATTGGCGTCTCTAAACATCCTTGGTTTGTTTCAAATGTATTTAACGTATCAAAGAAAGTGTTTTCCAAGCAATATGATACTGTATTCAAAAGCTAAAATTTAAAATAAAGAGAGCTTATTTCAAGTGATGTGCGATATATAAAAGTATATTTTCCGTTTACCAAAATGACAGGAAAAGATATAATCACATAGGTTTTTCTGTCACTTTGCATGCTTGATACAATTTGGACGAATTCATTGCTGAGTAGAGGCGGTTGAGGTCATGAATAACACAATTGAGTCTCTGTATATATA
Unaligned ( gi|8 ): ACAACCTTGGTTTGTTTTAAATGTATATAACGTATCAAAGGAATCGTTCTCCATACAATATGATCCTGTATTCAAAAGCTAATATTCAAACTAAAGAGAGCTTATTTCAAGTGACGGGCGATATATCAATAGATATTTTCCGTTTAACAAAATTACAGGAAAAATATAATCACATACGTTTTTCTGCCACATTGCATGCTTGATACCATTTGGACGAATTCATTGCT
Unaligned ( gi|10 ): AAATATTTTTTTTAAAACTTTGATGTGGGTCACTTCACATCTCCGTTTTATTTGAAATAAGGCATGTCTCAGAAAACGTTTTCCAAATAATGTACATATATGTAATCCTGTACTTAAAGGTTAATATTTAAATCAAATGGAGCTTATTTCAGAATAGAATCACCATATCAAATATATGTTTGTTAATGATAGCGTTTGTTTACAAATATAAAAGAAAAAAAT
Unaligned ( gi|14 ): TTTGAATCATAAGCAATAGATAACCAGATTTACAAACTATTAGAAAAACATACTTTCAAATGAAGTTTTTTTTATTTCATATAGTTTGTAAATGAGCATCACATGGACGATTTCGGTGTTCATTAGAGGGATTGAAGG
Unaligned ( gi|16 ): GCTGTATGGACGATTTCATAGCTGAATAGAGGGACTGAAGGTTAAAACACACTACATAACACCGGAGTCCCTGCATACAGTAAACAACCAATTT
Unaligned ( gi|17 ): TAACACGCTCGAGTCTCTGTTAGAGTACATGTAATTAGTCATTGAACAAGAGTCTCTGTGTATTGTAAATATTCATCGAA
Unaligned ( gi|18 ): ACTTTGGTGTAGATCTCTTTACATCCTCGATTTTTTTAAAACAGCGCATGTCCCAGAAAACGTTCACTAGAAATATA
Unaligned ( gi|19 ): ATATTAATATGTGTTGTAGATTAATTGACGCAATGTTAACTG