lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 11111111111111111111111111111111111111111111111111111111111111111111 222222222 22222222222222 111 11111111
lowQualScore : 3 44 6666 3 77777 555 3 55 44 1 3 22222222222222222222222222222222222222222222222222222222222222222222 4 2 6 55 3 55 55 888 444444444 4 66666666666666 4 4 999 777 4 4 4 77777777 0
lowQualScore : . .. .... . ..... ... . .. .. . . .................................................................... . . . .. . .. .. ... ......... . .............. . . ... ... . . . ........ .
lowQualScore : 6 55 5555 1 77777 444 1 00 66 8 0 55555555555555555555555555555555555555555555555555555555555555555555 0 3 8 55 6 00 00 777 222222222 4 11111111111111 4 4 444 000 0 4 4 44444444 4
consensus : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--CTTG-TCCAGCCCCGGA-GG---C--C--TA------CGA----CTT-CC--GGAG-CAC---GAGG----AG-TTTNCC--C-GCGGATNTG--GA-GCT--A--GCCAGACGC-GNGGCGC--------GGCG-G--------------AGC-CC-AGANTAGAAG---ACCGGC-GGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
Reference ( gi|7 ) : GTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--CTTT-TCCAGCCCC---------C--C--TA------CGA----CTT-CG--AAAG-AAC---GAAG----AG-TTTACT--C-GCGGATTTG--GA-GCT--A--GCCAGACGC-ATGGCGC--------AGCA-G--------------AGC-CC-AGATTAGAAG---ACCAGC-GGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-A-TGTATTAT
gi|1 : TATAGTA-TC-TGGACTGGGGG-T-----TTACCGCCC-TGGTACGA--CTTG-TCTAGTCCCGGATGG---CAACAATG------CGA----CCT-CC--AGAG-CAT---GAGG----AG-ATTTCC--C-GCAAACATG--GA-GCTTAA--ATTA-ATGC-AGGACGCTCGACATTGGCA-G--------------AGC-TC-GGAATAGAAG---ACCGAC-AACAGGGAGCGT-GGTAGT-CCGTGGAACC---C--A-TG-ATTAT
gi|17 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTtgaatatagtggaataaatactagacagattctt
gi|12 : acgatataaatcttcaaatgattagacTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGG
gi|10 : caaaatcagtcctacgcctctgatactagtgccacataaagacgtcataattcatttacatgattcatttacagaaagtatTATAGTA-T---GG----GGGG-T-----ATATC---C-CGGTACAA--CTTG-TCTAGTACCGGATGGTAACAAC--TACAAGG-CGA----CTTCCG--GCAG-CACCAAGGAG----AA-CT--CC--C-GCAGATATG--GA-GCT--A--G
gi|11 : TATAGTA-TG--GG----GGGG-T-----ATATC---C-CGGTACAA--CTTG-TCTAGTACCGGATGGTAACAAC--TAACAAGGCGA----CTTCCG--GCAG-CAC---AAGG----AG---AACTCCC-GCAGATATG--GA-GCT--A--
gi|6 : GTAGTA-TC-TGG----GGAGGT-----CTACC---CTCGGTACGA---TTT-TCCAGCCCC---------C--C----------CGAT---CTT-CGCAAAAGTAAC---GCAA----AG-TTTACT--C-GCGGATTTG--GA-GCT--AGCGCTAGACGCAATGGCGC--------AGCAGG--------------AGCGCC-AGATTAGAAG---A-CAGCAGGCAGGGAGCGT-GGTAGTACCGTGGAACG---CGAA-TGTATTA
gi|3 : GTAGTA-TC-TGG----GGAG-T-----CTACC---C-CTGTACGA--CTTG-TCCTGCCCC---------C--C--TA------CGA----CTT-C----------------------AG-TTTACC--C-GCGGATTCG--GA-GCT--A--GCCTGACGC-GTGGCGC--------GGCA-GAGCCCCGGGGGCAGAGC-CC-AGTATAGCAG---ACCAGC-GGCAGGGAGCGT-GGTGGT-CCGTGGAACCCG-CG-A-TGTAT
gi|16 : GTAGTA-TCCTGG----GGA--T-----CTACC---C-CGGTACGA--TTTG-TGTAGTCC-----------------A------GGATTGCTTT-CG--GTAG-GAC---AAAG----AGATTTatgtatataatctgaataaaccattggatactttaat
gi|2 : taccTAGTA-TC-TGG----GGAG-T-----CTACT---C-CGGTACGA--CTTG-TCCAGTCCCGGAGGGTAAC--CAGTG------CGA----CTT-CC--GGAG-CAC---GAGG----AG-TT----------------G--GA-GCA--A--GCCAGAAGC-GAGGCAC--------GGCG-G--------------AAC-CC-ATGGTAGAAG---ACCGAC-GGCAGGGAGCGT-GGTAGT-CCGTGAAACCTGGTG-G-TGTATTc
gi|5 : AGTAATC---G----GGAG-T-----CTACC---C-CGGTCCGAAACCTA-TC-AGCCCC---------C--G--TA--------A----CTT-CC---------C---GGGGCACTAG-TTTTTT--CAGCGAATCTGCAAA-GGT--A--AGCAGACG--A-GGCGC---------GCA-G------------------CC-A-ATT-GAAG---AC-AGC-GGCAGGGACGGT-GGTAAG-TCGTGGAA-C---CG-G-TGAATTAtgtatactagtatagtgtgaataaatgcttggatactttacttt
gi|8 : AGTA-TC-TGG----GGAG-TCGAGTCTACC---C-CGGTACGA--CTTA-TCCAG-CCC---------C--G--GA------TGA----CTT-TC--TAAG-CAC---CAGG----A--T--------------TTTG--GA-GCA--G--GCCAGATAC-GAGGCAC--------GACG-A--------------AGC-GC-ACGGTAGAAG---ACCGGC-AGTAgtattattgtgtaaaaaccattgaaact
gi|18 : ata-TGG----GGGG-T-----ATATC---C-CGGTACAA--CTTG-TCTAG
gi|4 : taGG----GGAG-C-----CTACC---C--GGTACGA--CACTATCCAGCCCC---------T--G--TA------CGA----CTT-CC--GGGG-AAC---GA-------G-TTTACCA-C-GCGAATCTG--AACGGT--A--GCCAGACGC-ATGGCGC--------GGCA-G--------------AGC-CT-AGATTAGAAG---ACCAGC-GGCAGGGAGCGTCGGTAGT-CCGTGGAACC---CG-GTTGTATTATtaccgga
gi|9 : ------CGA----CTT-CC--TGCG-CAC---GAGG----AA-TTTTCC--C-GCGCACATG--GA-GCT--A--GCCAGACGC-GCGGCAC--------GGCG-G--------------AGC-CCCAG--TAGAAG---ACCGGC-GGCAGAGAGCGT-GGTAGT-CCGTGGAACgaatatattctgtaaataaaccattggatactttaat
gi|14 : -GCT--A--GCCAGACGC-ATGGCGC--------GGCG-G--------------AGC-CT-A---TAGAAGAATACCAGC-GGCAGGGAACAT-GGTAGC-CCATGGAACC---CG-G-TTTATTAT
gi|13 : TAGAAG---ACCGAT-GGCAAGAAGACC-GGTAGT-CCGTGGGGAC---CGCA-TGT-TTATgtata
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GACAGCAGAAAGCTTAAGACCGGTAAAGTCCGTGGGACCCATGTAATTGTAAATATACTGTGTGTATCAACACCACAGACATTCTAATA
Alignments
lowQualScore : 999999999999999999999999999 1111111 1111111 22222222222222 111 111
lowQualScore : 3 33 6666 2 77777 555 2 44 3 0 0 111111111111111111111111111 4444444 6 0 5 3 1 3 55 3 0000000 3 55 666 4 55 33333333333333 4 1 1 4 4 333 222
lowQualScore : . .. .... . ..... ... . .. . . . ........................... ....... . . . . . . .. . ....... . .. ... . .. .............. . . . . . ... ...
lowQualScore : 3 55 1111 9 11111 000 9 66 3 2 8 555555555555555555555555555 2222222 7 2 4 6 2 5 00 3 8888888 3 55 444 0 44 55555555555555 0 4 0 0 0 999 222
consensus : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAG--------------C-CCAGAGTAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
Reference ( family-3126 ) : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTNCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAG--------------C-CCAGANTAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
gi|1 : TATAGTA-TC-TGGACTGGGGG-T-----TTACCGCCC-TGGTACGA--C-TTGTCTAGTCCCGGATGG----CAA---CAATG------CGACCTCC-A---G-AGCA-TGAGGAGATTTCC-CGCAAACATG--GA-GCTTAAATTAATGC--AGGACGCTC-GACATTGGC-AGAG--------------C-TCGGAATAGAAGACCGACAACAGGGAGCGT-GGTAGT-CCGTGGAACC---C--A-TG-ATTAT
gi|10 : TATAGTA-T---GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TACAAGG-CGACTTCC-G---GCAGCACCAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-Gtgaatatagtggaataaatactagacagattctt
gi|11 : TATAGTA-TG--GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TAACAAGGCGACTTCC-G---GCAGCA-CAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-
gi|12 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGG
gi|13 : caaaatcagtcctacgcctctgatactagtgccacataaagacgtcataattcatttacatgattcatttacagaaagtatGGATAGAAGACCGATGGCAAGAAGACC-GGTAGT-CCGTGGGGAC---CGCA-TGT-TTAT
gi|14 : g-GCT-------A-GC--CAGACGCAT-GGCGC-GGC-GGAG--------------C-CTATAGAAGAATACCAGCGGCAGGGAACAT-GGTAGC-CCATGGAACC---CG-G-TTTATTATtgtcataagtgtggataaaatagtaacagaccacttt
gi|16 : GTAGTA-TCCTGG----GGA--T-----CTACC---C-CGGTACGA--T-TTGTGTAGTCC---A-GG--------------A------TTGCTTTC-G---GTAGGA-CAAAGAGATTTCgtata
gi|17 : taccTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGT
gi|18 : acgatataaatcttcaaatgattagac-TGG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGA-
gi|2 : taTAGTA-TC-TGG----GGAG-T-----CTACT---C-CGGTACGA--C-TTGTCCAGTCCCGGA-GGGTAAC-----CAGTG------CGACTTCC-G---G-AGCA-CGAGGAGTT--------------G--GA-GCA-------A-GC--CAGAAGCGA-GGCAC-GGC-GGAA--------------C-CCATGGTAGAAGACCGACGGCAGGGAGCGT-GGTAGT-CCGTGAAACCTGGTG-G-TGTATT
gi|3 : GTAGTA-TC-TGG----GGAG-T-----CTACC---C-CTGTACGA--C-TTGTCCTGCCCC----------C-----C--TA------CGACTTC------------------AGTTTACC-CGCGGATTCG--GA-GCT-------A-GC--CTGACGCGT-GGCGC-GGC-AGAGCCCCGGGGGCAGAGC-CCAGTATAGCAGACCAGCGGCAGGGAGCGT-GGTGGT-CCGTGGAACCCG-CG-A-TGTATtgtatactagtatagtgtgaataaatgcttggatactttacttt
gi|4 : GG----GGAG-C-----CTACC---C--GGTACGA--CACTATCCAGCCCCTG-----------------TA------CGACTTCC-G---G-GGAA-CGAG---TTTACCACGCGAATCTG--AACGGT-------A-GC--CAGACGCAT-GGCGC-GGC-AGAG--------------C-CTAGATTAGAAGACCAGCGGCAGGGAGCGTCGGTAGT-CCGTGGAACC---CG-GTTGTATTATatgtatataatctgaataaaccattggatactttaat
gi|5 : AGTAATC---G----GGAG-T-----CTACC---C-CGGTCCGAAAC-CTATC-AGCCCCCG-----------------TA--------ACTTCCCG---G-GGCA-CTAGT--TTTTTC-AGCGAATCTGCAAA-GGT-------A-AG--CAGACG--A-GGCGC-G-C---AG--------------C-C---AATTGAAGAC-AGCGGCAGGGACGGT-GGTAAG-TCGTGGAA-C---CG-G-TGAATTAgaatatattctgtaaataaaccattggatactttaat
gi|6 : GTAGTA-TC-TGG----GGAGGT-----CTACC---CTCGGTACGA--T-TT-TCCAGCCCC----------C-----C----------CGATCTTC-GCAAA-AGTAACGCAAAGTTTACT-CGCGGATTTG--GA-GCT-------A-GCGCTAGACGCAATGGCGC-AGCAGGAG--------------CGCCAGATTAGAAGACAGCAGGCAGGGAGCGT-GGTAGTACCGTGGAACG---CGAA-TGTATTAgtattattgtgtaaaaaccattgaaact
gi|7 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTTTCCAGCCCC----------C-----C--TA------CGACTTCG-A---A-AGAA-CGAAGAGTTTACT-CGCGGATTTG--GA-GCT-------A-GC--CAGACGCAT-GGCGC-AGC-AGAG--------------C-CCAGATTAGAAGACCAGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-A-TGTATTAT
gi|8 : gAGTA-TC-TGG----GGAG-TCGAGTCTACC---C-CGGTACGA--C-TTATCCAGCCCCGG------------------A------TGACTTTC-T---A-AGCA-CCAGGA-TTT------------TG--GA-GCA-------G-GC--CAGATACGA-GGCAC-GAC-GAAG--------------C-GCACGGTAGAAGACCGGCAGTA
gi|9 : ata------CGACTTCC-T---G-CGCA-CGAGGAATTTTCC-CGCGCACATG--GA-GCT-------A-GC--CAGACGCGC-GGCAC-GGC-GGAG--------------C-CC-CAGTAGAAGACCGGCGGCAGAGAGCGT-GGTAGT-CCGTGGAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGCAGAAAGCTTAAGACCGGTAAAGTCCGTGGGACCCATGTAATTGTAAATATACTGTGTGTATCAACACCACAGACATTCTAATA
Alignments
lowQualScore : 999999999999999999999999999 1111111 1111111 2222222222222222222 111 111
lowQualScore : 3 33 6666 2 77777 555 2 44 3 0 0 111111111111111111111111111 4444444 6 0 5 3 1 3 55 3 0000000 3 55 666 4 55 4 0000000000000000000 4 4 333 222
lowQualScore : . .. .... . ..... ... . .. . . . ........................... ....... . . . . . . .. . ....... . .. ... . .. . ................... . . ... ...
lowQualScore : 3 55 1111 9 11111 000 9 66 3 2 8 555555555555555555555555555 2222222 7 2 8 6 2 5 00 3 8888888 3 55 444 0 44 0 0000000000000000000 0 0 999 222
consensus : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
Reference ( family-3126 ) : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
gi|1 : TATAGTA-TC-TGGACTGGGGG-T-----TTACCGCCC-TGGTACGA--C-TTGTCTAGTCCCGGATGG----CAA---CAATG------CGACCTCC-A---G-AGCA-TGAGGAGATTTCC-CGCAAACATG--GA-GCTTAAATTAATGC--AGGACGCTC-GACATTGGC-AGAGC-T-------CGGAA-------TAGAAGACCGACAACAGGGAGCGT-GGTAGT-CCGTGGAACC---C--A-TG-ATTAT
gi|10 : TATAGTA-T---GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TACAAGG-CGACTTCC-G---GCAGCACCAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-Gtgaatatagtggaataaatactagacagattctt
gi|11 : TATAGTA-TG--GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TAACAAGGCGACTTCC-G---GCAGCA-CAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-
gi|12 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGG
gi|13 : caaaatcagtcctacgcctctgatactagtgccacataaagacgtcataattcatttacatgattcatttacagaaagtat-------TAGAAGACCGATGGCAAGAAGACC-GGTAGT-CCGTGGGGAC---CGCA-TGT-TTAT
gi|14 : ggga-GCT-------A-GC--CAGACGCAT-GGCGC-GGC-GGAGC-C-------TATAG-------AAGAATACCAGCGGCAGGGAACAT-GGTAGC-CCATGGAACC---CG-G-TTTATTATtgtcataagtgtggataaaatagtaacagaccacttt
gi|16 : GTAGTA-TCCTGG----GGA--T-----CTACC---C-CGGTACGA--T-TTGTGTAGTCC---A-GG--------------A------TTGCTTTC-G---GTAGGA-CAAAGAGATTTCgtata
gi|17 : taccTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGT
gi|18 : acgatataaatcttcaaatgattagac-TGG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGA-
gi|2 : taTAGTA-TC-TGG----GGAG-T-----CTACT---C-CGGTACGA--C-TTGTCCAGTCCCGGA-GGGTAAC-----CAGTG------CGACTTCC-G---G-AGCA-CGAGGAGTT--------------G--GA-GCA-------A-GC--CAGAAGCGA-GGCAC-GGC-GGAAC-C-------CATGG-------TAGAAGACCGACGGCAGGGAGCGT-GGTAGT-CCGTGAAACCTGGTG-G-TGTATT
gi|3 : GTAGTA-TC-TGG----GGAG-T-----CTACC---C-CTGTACGA--C-TTGTCCTGCCCC----------C-----C--TA------CGACTTC------------------AGTTTACC-CGCGGATTCG--GA-GCT-------A-GC--CTGACGCGT-GGCGC-GGC-AGAGC-CCCGGGGGCAGAGCCCAGTATAGCAGACCAGCGGCAGGGAGCGT-GGTGGT-CCGTGGAACCCG-CG-A-TGTATtgtatactagtatagtgtgaataaatgcttggatactttacttt
gi|4 : GG----GGAG-C-----CTACC---C--GGTACGA--CACTATCCAGCCCCTG-----------------TA------CGACTTCC-G---G-GGAA-CGAG---TTTACCACGCGAATCTG--AACGGT-------A-GC--CAGACGCAT-GGCGC-GGC-AGAGC-C-------TAGAT-------TAGAAGACCAGCGGCAGGGAGCGTCGGTAGT-CCGTGGAACC---CG-GTTGTATTATatgtatataatctgaataaaccattggatactttaat
gi|5 : AGTAATC---G----GGAG-T-----CTACC---C-CGGTCCGAAAC-CTATC-AGCCCCCG-----------------TA--------ACTTCCCG---G-GGCA-CTAGT--TTTTTC-AGCGAATCTGCAAA-GGT-------A-AG--CAGACG--A-GGCGC-G-C---AGC-C----------AA-------TTGAAGAC-AGCGGCAGGGACGGT-GGTAAG-TCGTGGAA-C---CG-G-TGAATTAgaatatattctgtaaataaaccattggatactttaat
gi|6 : GTAGTA-TC-TGG----GGAGGT-----CTACC---CTCGGTACGA--T-TT-TCCAGCCCC----------C-----C----------CGATCTTC-GCAAA-AGTAACGCAAAGTTTACT-CGCGGATTTG--GA-GCT-------A-GCGCTAGACGCAATGGCGC-AGCAGGAGCGC-------CAGAT-------TAGAAGACAGCAGGCAGGGAGCGT-GGTAGTACCGTGGAACG---CGAA-TGTATTAgtattattgtgtaaaaaccattgaaact
gi|7 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTTTCCAGCCCC----------C-----C--TA------CGACTTCG-A---A-AGAA-CGAAGAGTTTACT-CGCGGATTTG--GA-GCT-------A-GC--CAGACGCAT-GGCGC-AGC-AGAGC-C-------CAGAT-------TAGAAGACCAGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-A-TGTATTAT
gi|8 : gAGTA-TC-TGG----GGAG-TCGAGTCTACC---C-CGGTACGA--C-TTATCCAGCCCCGG------------------A------TGACTTTC-T---A-AGCA-CCAGGA-TTT------------TG--GA-GCA-------G-GC--CAGATACGA-GGCAC-GAC-GAAGC-G-------CACGG-------TAGAAGACCGGCAGTA
gi|9 : ata------CGACTTCC-T---G-CGCA-CGAGGAATTTTCC-CGCGCACATG--GA-GCT-------A-GC--CAGACGCGC-GGCAC-GGC-GGAGC-C-------C-CAG-------TAGAAGACCGGCGGCAGAGAGCGT-GGTAGT-CCGTGGAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGCAGAAAGCTTAAGACCGGTAAAGTCCGTGGGACCCATGTAATTGTAAATATACTGTGTGTATCAACACCACAGACATTCTAATA
Alignments
lowQualScore : 999999999999999999999999999 1111111 1111111 2222222222222222222 111 111
lowQualScore : 3 33 6666 2 77777 555 2 44 3 0 0 111111111111111111111111111 4444444 6 0 5 3 1 3 55 3 0000000 3 55 666 4 55 4 0000000000000000000 4 4 333 222
lowQualScore : . .. .... . ..... ... . .. . . . ........................... ....... . . . . . . .. . ....... . .. ... . .. . ................... . . ... ...
lowQualScore : 3 55 1111 9 11111 000 9 66 3 2 8 555555555555555555555555555 2222222 7 2 8 6 2 5 00 3 8888888 3 55 444 0 44 0 0000000000000000000 0 0 999 222
consensus : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
Reference ( family-3126 ) : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
gi|1 : TATAGTA-TC-TGGACTGGGGG-T-----TTACCGCCC-TGGTACGA--C-TTGTCTAGTCCCGGATGG----CAA---CAATG------CGACCTCC-A---G-AGCA-TGAGGAGATTTCC-CGCAAACATG--GA-GCTTAAATTAATGC--AGGACGCTC-GACATTGGC-AGAGC-T-------CGGAA-------TAGAAGACCGACAACAGGGAGCGT-GGTAGT-CCGTGGAACC---C--A-TG-ATTAT
gi|10 : TATAGTA-T---GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TACAAGG-CGACTTCC-G---GCAGCACCAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-Gtgaatatagtggaataaatactagacagattctt
gi|11 : TATAGTA-TG--GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGATGG----TAACAAC--TAACAAGGCGACTTCC-G---GCAGCA-CAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-
gi|12 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGG
gi|13 : caaaatcagtcctacgcctctgatactagtgccacataaagacgtcataattcatttacatgattcatttacagaaagtat-------TAGAAGACCGATGGCAAGAAGACC-GGTAGT-CCGTGGGGAC---CGCA-TGT-TTAT
gi|14 : ggga-GCT-------A-GC--CAGACGCAT-GGCGC-GGC-GGAGC-C-------TATAG-------AAGAATACCAGCGGCAGGGAACAT-GGTAGC-CCATGGAACC---CG-G-TTTATTATtgtcataagtgtggataaaatagtaacagaccacttt
gi|16 : GTAGTA-TCCTGG----GGA--T-----CTACC---C-CGGTACGA--T-TTGTGTAGTCC---A-GG--------------A------TTGCTTTC-G---GTAGGA-CAAAGAGATTTCgtata
gi|17 : taccTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGT
gi|18 : acgatataaatcttcaaatgattagac-TGG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACCGGA-
gi|2 : taTAGTA-TC-TGG----GGAG-T-----CTACT---C-CGGTACGA--C-TTGTCCAGTCCCGGA-GGGTAAC-----CAGTG------CGACTTCC-G---G-AGCA-CGAGGAGTT--------------G--GA-GCA-------A-GC--CAGAAGCGA-GGCAC-GGC-GGAAC-C-------CATGG-------TAGAAGACCGACGGCAGGGAGCGT-GGTAGT-CCGTGAAACCTGGTG-G-TGTATT
gi|3 : GTAGTA-TC-TGG----GGAG-T-----CTACC---C-CTGTACGA--C-TTGTCCTGCCCC----------C-----C--TA------CGACTTC------------------AGTTTACC-CGCGGATTCG--GA-GCT-------A-GC--CTGACGCGT-GGCGC-GGC-AGAGC-CCCGGGGGCAGAGCCCAGTATAGCAGACCAGCGGCAGGGAGCGT-GGTGGT-CCGTGGAACCCG-CG-A-TGTATtgtatactagtatagtgtgaataaatgcttggatactttacttt
gi|4 : GG----GGAG-C-----CTACC---C--GGTACGA--CACTATCCAGCCCCTG-----------------TA------CGACTTCC-G---G-GGAA-CGAG---TTTACCACGCGAATCTG--AACGGT-------A-GC--CAGACGCAT-GGCGC-GGC-AGAGC-C-------TAGAT-------TAGAAGACCAGCGGCAGGGAGCGTCGGTAGT-CCGTGGAACC---CG-GTTGTATTATatgtatataatctgaataaaccattggatactttaat
gi|5 : AGTAATC---G----GGAG-T-----CTACC---C-CGGTCCGAAAC-CTATC-AGCCCCCG-----------------TA--------ACTTCCCG---G-GGCA-CTAGT--TTTTTC-AGCGAATCTGCAAA-GGT-------A-AG--CAGACG--A-GGCGC-G-C---AGC-C----------AA-------TTGAAGAC-AGCGGCAGGGACGGT-GGTAAG-TCGTGGAA-C---CG-G-TGAATTAgaatatattctgtaaataaaccattggatactttaat
gi|6 : GTAGTA-TC-TGG----GGAGGT-----CTACC---CTCGGTACGA--T-TT-TCCAGCCCC----------C-----C----------CGATCTTC-GCAAA-AGTAACGCAAAGTTTACT-CGCGGATTTG--GA-GCT-------A-GCGCTAGACGCAATGGCGC-AGCAGGAGCGC-------CAGAT-------TAGAAGACAGCAGGCAGGGAGCGT-GGTAGTACCGTGGAACG---CGAA-TGTATTAgtattattgtgtaaaaaccattgaaact
gi|7 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTTTCCAGCCCC----------C-----C--TA------CGACTTCG-A---A-AGAA-CGAAGAGTTTACT-CGCGGATTTG--GA-GCT-------A-GC--CAGACGCAT-GGCGC-AGC-AGAGC-C-------CAGAT-------TAGAAGACCAGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-A-TGTATTAT
gi|8 : gAGTA-TC-TGG----GGAG-TCGAGTCTACC---C-CGGTACGA--C-TTATCCAGCCCCGG------------------A------TGACTTTC-T---A-AGCA-CCAGGA-TTT------------TG--GA-GCA-------G-GC--CAGATACGA-GGCAC-GAC-GAAGC-G-------CACGG-------TAGAAGACCGGCAGTA
gi|9 : ata------CGACTTCC-T---G-CGCA-CGAGGAATTTTCC-CGCGCACATG--GA-GCT-------A-GC--CAGACGCGC-GGCAC-GGC-GGAGC-C-------C-CAG-------TAGAAGACCGGCGGCAGAGAGCGT-GGTAGT-CCGTGGAAC
blockSeqs : A CT . G CGAGT . T AA A GGATGGTAACAACTAACAAGG GCAAA C T A G A CA C . . GC AAT . AG G CCGGGGGCAGAGCCCAGTA C A TGG CA
blockSeqs : . T . . . . . . . GGATGGTAACAACTACAAGG GGC A T . G A . . . . . AT . G . TATAG . . CG GT
blockSeqs : . T . . . . . . . GGAGGGTAACCAGTG GGC . T . G T . . . . . GA . G . CATGG . . . AA
blockSeqs : . T . . . . . . . AGGA GGT . A . A C . . . . . GT . A . TAGAT . . . G
blockSeqs : . T . . . . . . . CCTA CGG . A . A C . . . . . AT . A . CAGAT . . . G
blockSeqs : . T . . . . . . . TGTA GG . T . G T . . . . . AT . A . CAGAT . . . A
blockSeqs : . T . . . . . . . CGTA GG . A . G T . . . . . GA . G . CACGG . . . G
blockSeqs : . T . . . . . . . CCTA AA . A . C A . . . . . GC . G . CCAG . . . A
blockSeqs : . T . . . . . . . GGA TA . T . . . . . . . . A . . . AA . .
blockSeqs : . . . . . . . . . CC TG . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . .
blockSeqs : . . . . . .
blockSeqs : . . . . .
blockSeqCons : **** *** CGTA*********************** *******
originalCons : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCGGA-GG----C-----C--TA------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
finalCons : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCCCGTA-----------------------CGACTTCC-G---G-AGCA-CGAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGCAGAAAGCTTAAGACCGGTAAAGTCCGTGGGACCCATGTAATTGTAAATATACTGTGTGTATCAACACCACAGACATTCTAATA
Alignments
lowQualScore : 88888888888888888888888888888888888888 1111111 1111111 2222222222222222222 111 111
lowQualScore : 3 33 6666 2 77777 555 2 44 3 0 0 1 00000000000000000000000000000000000000 555 4444444 3 33 5 3 1 3 55 3 0000000 3 55 666 4 55 4 0000000000000000000 4 4 333 222
lowQualScore : . .. .... . ..... ... . .. . . . . ...................................... ... ....... . .. . . . . .. . ....... . .. ... . .. . ................... . . ... ...
lowQualScore : 3 55 1111 9 11111 000 9 66 3 2 8 8 99999999999999999999999999999999999999 888 2222222 3 66 8 6 2 5 00 3 8888888 3 55 444 0 44 0 0000000000000000000 0 0 999 222
consensus : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCC----------C-G-----------TA------C-----GA---CTTCC-G---G-AGCA-C-GAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
Reference ( family-3126 ) : NTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTGTCCAGCCCC----------C-G-----------TA------C-----GA---CTTCC-G---G-AGCA-C-GAGGAGTTTTCC-CGCGGATNTG--GA-GCT-------A-GC--CAGACGCGN-GGCGC-GGC-GGAGC-C-------CAGAG-------TAGAAGACCGGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-G-TGTATTAT
gi|1 : TATAGTA-TC-TGGACTGGGGG-T-----TTACCGCCC-TGGTACGA--C-TTGTCTAGTCCC----------G-GATGGCAACAA-TG------C-----GA---CCTCC-A---G-AGCA-T-GAGGAGATTTCC-CGCAAACATG--GA-GCTTAAATTAATGC--AGGACGCTC-GACATTGGC-AGAGC-T-------CGGAA-------TAGAAGACCGACAACAGGGAGCGT-GGTAGT-CCGTGGAACC---C--A-TG-ATTAT
gi|10 : TATAGTA-T---GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACC----------G-GATGGTAACAACTA------CAAGGCGA---CTTCC-G---GCAGCA-CCAAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-Gtgaatatagtggaataaatactagacagattctt
gi|11 : TATAGTA-TG--GG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAGTACC----------G-GATGGTAACAACTAACAAGGC-----GA---CTTCC-G---GCAGCA-C-AAGGAGAACTCC-CGCAGATATG--GA-GCT-------A-
gi|12 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGG
gi|13 : caaaatcagtcctacgcctctgatactagtgccacataaagacgtcataattcatttacatgattcatttacagaaagtat-------TAGAAGACCGATGGCAAGAAGACC-GGTAGT-CCGTGGGGAC---CGCA-TGT-TTAT
gi|14 : ggga-GCT-------A-GC--CAGACGCAT-GGCGC-GGC-GGAGC-C-------TATAG-------AAGAATACCAGCGGCAGGGAACAT-GGTAGC-CCATGGAACC---CG-G-TTTATTATtgtcataagtgtggataaaatagtaacagaccacttt
gi|16 : GTAGTA-TCCTGG----GGA--T-----CTACC---C-CGGTACGA--T-TTGTGTAGTCC--------------------------A------G-----GATTGCTTTC-G---GTAGGA-C-AAAGAGATTTCgtata
gi|17 : taccTGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGT
gi|18 : acgatataaatcttcaaatgattagac-TGG----GGGG-T-----ATATC---C-CGGTACAA--C-TTGTCTAG
gi|2 : taTAGTA-TC-TGG----GGAG-T-----CTACT---C-CGGTACGA--C-TTGTCCAGTCCCGGAGGGTAACCAG-----------TG------C-----GA---CTTCC-G---G-AGCA-C-GAGGAGTT--------------G--GA-GCA-------A-GC--CAGAAGCGA-GGCAC-GGC-GGAAC-C-------CATGG-------TAGAAGACCGACGGCAGGGAGCGT-GGTAGT-CCGTGAAACCTGGTG-G-TGTATTtaccgga
gi|3 : GTAGTA-TC-TGG----GGAG-T-----CTACC---C-CTGTACGA--C-TTGTCCTGCCCC----------C-C-----------TA------C-----GA---CTTC-------------------AGTTTACC-CGCGGATTCG--GA-GCT-------A-GC--CTGACGCGT-GGCGC-GGC-AGAGC-CCCGGGGGCAGAGCCCAGTATAGCAGACCAGCGGCAGGGAGCGT-GGTGGT-CCGTGGAACCCG-CG-A-TGTATtgtatactagtatagtgtgaataaatgcttggatactttacttt
gi|4 : GG----GGAG-C-----CTACC---C--GGTACGA--CACTATCCAGCCCC----------T-G-----------TA------C-----GA---CTTCC-G---G-GGAA-C-GAG---TTTACCACGCGAATCTG--AACGGT-------A-GC--CAGACGCAT-GGCGC-GGC-AGAGC-C-------TAGAT-------TAGAAGACCAGCGGCAGGGAGCGTCGGTAGT-CCGTGGAACC---CG-GTTGTATTATatgtatataatctgaataaaccattggatactttaat
gi|5 : AGTAATC---G----GGAG-T-----CTACC---C-CGGTCCGAAAC-CTATC-AGCCCC----------C-G-----------TA-------------A---CTTCCCG---G-GGCA-C-TAGT--TTTTTC-AGCGAATCTGCAAA-GGT-------A-AG--CAGACG--A-GGCGC-G-C---AGC-C----------AA-------TTGAAGAC-AGCGGCAGGGACGGT-GGTAAG-TCGTGGAA-C---CG-G-TGAATTAgaatatattctgtaaataaaccattggatactttaat
gi|6 : GTAGTA-TC-TGG----GGAGGT-----CTACC---CTCGGTACGA--T-TT-TCCAGCCCC----------C-C-------------------C-----GA---TCTTC-GCAAA-AGTAAC-GCAAAGTTTACT-CGCGGATTTG--GA-GCT-------A-GCGCTAGACGCAATGGCGC-AGCAGGAGCGC-------CAGAT-------TAGAAGACAGCAGGCAGGGAGCGT-GGTAGTACCGTGGAACG---CGAA-TGTATTAgtattattgtgtaaaaaccattgaaact
gi|7 : TGTAGTA-TC-TGG----GGAG-T-----CTACC---C-CGGTACGA--C-TTTTCCAGCCCC----------C-C-----------TA------C-----GA---CTTCG-A---A-AGAA-C-GAAGAGTTTACT-CGCGGATTTG--GA-GCT-------A-GC--CAGACGCAT-GGCGC-AGC-AGAGC-C-------CAGAT-------TAGAAGACCAGCGGCAGGGAGCGT-GGTAGT-CCGTGGAACC---CG-A-TGTATTAT
gi|8 : gAGTA-TC-TGG----GGAG-TCGAGTCTACC---C-CGGTACGA--C-TTATCCAG-CCC----------C-G-----------GA------T-----GA---CTTTC-T---A-AGCA-C-CAGGA-TTT------------TG--GA-GCA-------G-GC--CAGATACGA-GGCAC-GAC-GAAGC-G-------CACGG-------TAGAAGACCGGCAGTA
gi|9 : ata------C-----GA---CTTCC-T---G-CGCA-C-GAGGAATTTTCC-CGCGCACATG--GA-GCT-------A-GC--CAGACGCGC-GGCAC-GGC-GGAGC-C-------C-CAG-------TAGAAGACCGGCGGCAGAGAGCGT-GGTAGT-CCGTGGAAC
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GACAGCAGAAAGCTTAAGACCGGTAAAGTCCGTGGGACCCATGTAATTGTAAATATACTGTGTGTATCAACACCACAGACATTCTAATA