lowQualScore : 2222222222222222222222222222222222222222 11111111111111111111111111111111111111 1111111111111 1111111111111111111111111
lowQualScore : 4 1 22 1 0000000000000000000000000000000000000000 1 1 1 5555555555 1 666 9999999999 4 1 4 1 44444444 11 22222 11 444444 444444 22222 3333333 11 666666666666666 1 33 3333 11 5555 22 11 11 3333 2 3 55 55555555555555 1 1 555555 1 11 1 33 2 22 111 11 8888888888888888888888888888888 2222222 1 2222222 1111 55555 1 55555555555555555555555555555555555555 1 4444444 11 22222 1 11 11 2222222222222 0000000000000000000000000 4 333333 1 1 333 4444444444 11 1 1 1 11 11 33 22
lowQualScore : 0 7 33 7 6 3333333333333333333333333333333333333333 5 5 7 3333333333 6 5 111 4444444444 0 7 0 4 2 5 6 0 55555555 3 11 99999 00 111111 0 4 8 0 222222 33333 4444444 22 444444444444444 5 7 00 6666 6 33 6 4444 33 88 88 6 7777 6 2 7 6 55 7 33333333333333 0 0 0 8 0 333333 5 11 0 99 8 1 5 77 0 3 5 8 11 111 99 3333333333333333333333333333333 1111111 0 8 2 3333333 7777 0 0 8 77777 3 7 3 44444444444444444444444444444444444444 5 4444444 88 7 66666 3 6 44 3 2 6 00 1 6 9999999999999 4 4 4 2222222222222222222222222 0 222222 3 3 222 7 7777777777 7 88 7 7 3 5 3 88 66 77 7 33
lowQualScore : . . .. . . ........................................ . . . .......... . . ... .......... . . . . . . . . ........ . .. ..... .. ...... . . . . ...... ..... ....... .. ............... . . .. .... . .. . .... .. .. .. . .... . . . . .. . .............. . . . . . ...... . .. . .. . . . .. . . . . .. ... .. ............................... ....... . . . ....... .... . . . ..... . . . ...................................... . ....... .. . ..... . . .. . . . .. . . ............. . . . ......................... . ...... . . ... . .......... . .. . . . . . .. .. .. . ..
lowQualScore : 0 0 00 0 0 0000000000000000000000000000000000000000 0 0 0 0000000000 0 0 000 0000000000 0 0 0 0 5 0 7 7 77777777 2 88 55555 22 222222 2 5 0 8 444444 88888 4444444 88 222222222222222 5 3 77 7777 7 77 7 0000 00 33 33 7 7777 7 3 3 0 00 0 22222222222222 8 8 6 0 0 222222 0 44 0 00 0 4 0 00 8 2 0 2 88 888 88 2222222222222222222222222222222 8888888 0 0 2 6666666 0000 8 8 0 44444 2 3 3 33333333333333333333333333333333333333 0 7777777 33 3 33333 3 7 00 2 5 0 00 7 5 8888888888888 0 0 0 0000000000000000000000000 0 777777 3 3 000 3 7777777777 3 33 3 3 3 0 3 33 00 00 3 00
consensus : NTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATATA---CTTCA--GAATACAAAGCTG-CTAATCTACTCAACCCAAATNANTAAAACTAAAAGATAA-CGCAA-TTAGCTGAGN-TTTAATTATAAA-CTTTTGNAAA--ATCTTCTGA-ACAATAATAAATC---C-GTAAGT-NT-TGGAATAAA------AATGTATCAAAA---------T--C-TGCGACAGTTTCTGCCA--TTACAAA--AAGATACTAAACACCTGATT----TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---CGGAGACTTTTTAAAATCAAACA-TACATTGG--AAACACATCGTCATTGGTTACTTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT--TCGTA-TATCGCCTTTCTTATTATATAAAGT-AAAATGAAATTAAGATCTA--GAAAAT-GAATCAGAATACAG-A----GTTGTTA-------------TAAAAAATAGAA-ATATGTTAA-AC-ATAACT-AT-ATTATACTG---TTATGAGATATA-TAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGAT-GTGTTTAT------AA-----TATGAT------------------TAATTAT-ATTAA----TCTGCCATA--TAAATGATATAA-AT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-NACTGTCCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGTTGCAT---GTGGCAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTNTATAATCANTGCATTTNATACTGATGAATATATGTGTATTTTATGATATCAATACTTTATCG-AATACTTGAATTACA-T-TTATATTTAAAATATA-TTTG-ACTAGT-GCAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTATG-TTT-TTG--TTNGATGAA-ATAAATAAGATGAAAAAAAAA
Reference ( gi|1 ) : TTATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATATAAACTTTCAAAGAATACAAAGCTGACTTATCTA-TCAACCCAAATAAGTAAAACTAAAAGACAAACACAAATTAGCTGAGTGTTCAATTATAAA-CTTTTGAAAAC-ATCTTCTAA-ACAATAACAAATC---TTGTAAGT-CT-TGGAACAAA------GATGTGTCAAAA---------T--C-TGTGACAGTTTCTGCCAAATTACAAAGAAAGATACTAAACCACTGATTA--TTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---TGGAGACTTTTTAAA-TCAAACAATACATTAGGAAAACACATTGTCATTGGTTACTTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT--TCGTA-TATCGCCTTTATTATTGTATAAAGTCAAAATGAAATTACGAACTA--GAAAAT-GAATTAGAATACAG-A----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-AT-ATCATACTA---TTATGAGATATA-TAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGAT-GTGTTTA-------AT-----TATGAT------------------TAATTATCATAAT----TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTTATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTATCGAAATACTTGAATTACATT-TTATATTTAAAATATA-TTTG-ACTAGTCGCAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTATGGTTT-TTG--TTGAATGAATTTAAATAAGATTAAAAAAAAAG
gi|2 : TATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATATA---CTTCA--GAATACAAAGCTG-CTAATCTACTCAACCCAAATAAGTAAAACTAAAA-ACAAACA---ATTAGCTGAGT--TTAATTATAAC-ATTTTGAACA--ATCTTCTGA-ACA-TAACAAATC---GT-TAAGTTCT-TGGAACAAA-------ATGTGTCAAA----------T--C-TGTG-CAGTTTCTGCCAA-TTACAAG--AAGATACAAAACACCTGATT----TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---CTGAGACTTTTTAAAATCAAACA-TACATTGG--AAACACATTGTCATTGGTTACTTTT-T------G-----A-TGAAA-CACGACACCACAAAA-CTCGTAATCTTCTCATT--TCGTA-TATCGCCTTTCTTATT-TAT---------------TTACGA-CTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAAAA---AA-ATATGTTAA-AC-ATAATTCATTAT-ATACTA---TTATGAGATATA-TAGAAAA-ATA-AACATTAGAATGAT-------------CATGATCTATCGAT-GTGTTTAT------AA-----TATTAT------------------TAATTATGATTTA----TCTCCCATA--TAA----TATA-----TGTA-TACATATGCATTTCTTTT-GTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCATTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTATCG-AATACTTGAATTACA-T-TTATATTTAAAATACA-TTTG-ACTA-TGATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATTGTTCATTGATTTAAATGAA-ATAA--AAGATGAAAAAAAA
gi|10 : AATTACTAAAA-TCAAAGATA--CGCAA-TTAGC--AGAGTTTAATTACAAA-TTCTTACAAA--ATCTTATCA-ATAATGATAAATCTGTTCATAAA-----TGGAATAAGAATTTTAATGTATCAAAtaattta
gi|8 : AAAAGATAA---CAATCT-GCGGAAATTTAAATTTTAAA-CTTCTG----CTATTTATTGA-ACAACAATAAATC---C-GTAAGT-GT-TGGAATAAA------TATGTAACAAAAAATTATCAATAAC-TGTGACAccaatgtccttcttgtcagacacccgaagatacaaaacatttaatcttt
gi|3 : aacaatttaaatgcgggcttcaaaagaacacagagtaatccattttatacgttgacataacaaccttggAGCTTAGT---CAATTATAAAACTTTTGGAAAA-ATCTTCTAACACAATAACAAATC---T-GTAAGT-TC-TTGAACAAA------GATGT-TCAAA----------T--C-TGTG-CAGTTTCTGCCA--TTACAAAGAA-GATACTAAACACCTGATT----TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTAC--TGGAGACTTTTTAAAATCAAACA-TACATTGG--AAACACAT-GTCATGCGTACCTTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT--TCGTA-TATCGCTTTTCTTATT-TATAAAGT-GAAATGAAATTATGA-CTA--GAAAATTGAATTAAAAT-CAG-G----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--T-ATTATACTG---TTATGAGA-ATAATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTTAT------AA-----TATGAT------------------TAATTATCATTAA----TCTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGTATTTTAT-------------------------GATATCAATACTTTATCG-AATACTTGAATTACA-T-TTATATTTAAAATATATTTTG-ACTAGATGCAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTATG--TT-TTG--TTG-ATGAA-TGAAATAAAG--AAAAAAAAttgacggaagatataaagcacgaaatgtttgcaactgtgaa
gi|4 : cgagA-ACAATAATAAATC---C-GAAAGT-GTCTGGAATAGA------AAGGTTACAAAA---------T--TATGCAATAG---CTGTGACATGACAGA---AGATA-TAAAACACT--TTAATCTTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCACGAAAAGTATGTAAG-GTAAACATT-CAGTGG--AAGCATAGTGTAAATGTTTACTTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTTTT-GTT--ATGTAACATTGCTTTTCTTAT-ATACAAAAT-AAAATGAAATTAAGATTTA--AAGAA--AAATCAGAA-ACAG-A---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CT-GATATATTG---CTACAAAATCTA-TAAGAAAT-TA-AAAATCAGAt
gi|11 : gCATATCGTCATTAGTTACTTTT-C------T-----GATG-AAACACG-CCCCAC---------TA----TCTCATTTCTCACA-TATCGCCTTTCTTATT-TATAAAGTGAAAATGAAATTAAG-ACTA--G
gi|6 : ATTGGTTACTTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTA-TCTAA-TAATGTGTTTCTTAT-ATACAAATTAAAAATGAAAATAAGATTT---GAAGAA-AAATCAGAA-ACAG-ACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-AT-A
gi|17 : atggcacgatatgtattcaaggtaaatattcagttgacacatattttaaatcaC-ATAACT--T-ATTATACTGCCGTTATGAGATA-----------------CACTAGAATGATACCAAATCATTTTCATGATCTagaaattagaaatta
gi|5 : atT-ATTACACTG---TTATGAGATATA-TAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAATCTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGATGCAT---GTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|16 : ctTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCT
gi|13 : cGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGTTGCAT---GTGGCAGTGTGCCTTACAGGTAAA
gi|2 : ATGTGAAGGGA-CAGTCTCCCTTCACATa
gi|16 : tatataaacatttatattaattaaatatttctttaggatattctcgtagcaaaaaaaattatcgtagaaaaaaaattaatcacacctctacacaagaaaatgtgctcaaacattcgatatacttcagaatacaaagctgctaatctactcaacccaaataagtaaaactaaaaacaaacaattagctgagtttaattataacattttgaacaatcttctgaacataacaaatcgttaagttcttggaacaaaatgtgtcaaatctgtgcagtttctgccaattacaagaagatacaaaacacctgatttttgattgcaaaaatgtaaaagatatctggaaaattactgagactttttaaaatcaaacatacattggaaacacattgtcattggttactttttgatgaaacacgacaccacaaaactcgtaatcttctcatttcgtatatcgcctttcttatttatttacgactatagaaaatgaattagaatcaggagttgcaataaaaaaaaatatgttaaacataattcattatatactattatgagatatatagaaaaataaacattagaatgatcatgatctatcgatgtgtttataatattattaattatgatttatctcccatataatatatgtatacatatgcatttcttttgtgaatcatgtacataagtgaggtcctATGTGAAGGAA-CAGTATCCCTTCACATtttgtttacctaggggcaaatggactcttggtacatgtatgtggtagtgtgccttgcaggtaaactaaggtagccttgcctatataatcaatgcatttaatactgatgaatatatgtgtattttatgatatcaatactttatcgaatacttgaattacatttatatttaaaatacatttgactatgatacaaatattataatattatatactcttcaaattaaaatacattaatgtataacattcatttagatatatgaagaatattgtaaagaaatattgttcattgatttaaatgaaataaaagatgaaaaaaaataattta
gi|9 : cttttgtgaatcatgtacataagtgaggtcgtTGAATT---TTACTATATTTAAAATATA-TTTGCAATGAT-GCAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTATGTTTT-TGG--TTTGATAGACATGAATAAGATAAAAAAAAAAtttgtttacct
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|7 ): ACAATTCAATGTGGACTTCAAAGAACACAGAGTATTGATCAATTTATATATCGAAAATAAGAAACATAATAGAAAAGCAACTTGCAGAATTTAATTTCAGGCTCCTGCATAATTTATTGAACAATAAGAAATCCATAAGTGTATGGAATTAAAACGTTACAAAATTATTCAATAACTGTGACGTGACAGAAGATATAAAACACTTCATGTTGGATTGTAGAAAGGTTAA
Unaligned ( gi|12 ): CAAGAAATGTATGCCAGGAAACATTACAGTGAAACAGAATTGTTGTTAATGGTTACCTTTTTTGTCGAAAATCGAAACATGCAACTTCTTAATCTTGTG
Unaligned ( gi|14 ): ATAAGAGATAAACAACTTGCGGAATTGAATTTCAATTAAGTTTAATAAATAATAAATCCGTAGGTGTCTGGAATAAAAATGTAACAAAATTATGCAAT
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 2 1 333 1 77777777 2 1 2 22 333333 33 1 1 222 1 11 222 22222222222 111111 1111 111111 11 11 11 11111 11 11 11 22222 1 2222222222 444444444444 1 11 444444 22 1 11 11 22 55555555555555555555555555 1111 11 111 11111 7777777777777777 1 4444444444444 3333333 1 11 33333 1 3333333333 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 4 4 4 0 4 5 555 2 5 22222222 4 3 3 4 0 5 0 2 77 222222 66 6 3 4 2 333 0 1 44 00 4 333 6 2 55555555555 5 2 5 6666666 1 33 0 5 222222 8888 444444 11 888 3 77 22 1 5 1 99999 3 55 8 6 99 11 11 2 11111 6 0 6 6 3 99 0 7777777777 5 77 5 888888888888 0 2 5 22 555555 3 77 6 99 6 55 1 3 6 3 88 44 11 00000000000000000000000000 0 4444 8 6 2 88 111 6 7 99999 0 3 6666666666666666 3 0 8888888888888 5555555 0 33 3 33333 2 0 55 0 77 3 3 3 6 4444444444 0 1 88 5 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 44 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . .. ...... .. . . . . ... . . .. .. . ... . . ........... . . . ....... . .. . . ...... .... ...... .. ... . .. .. . . . ..... . .. . . .. .. .. . ..... . . . . . .. . .......... . .. . ............ . . . .. ...... . .. . .. . .. . . . . .. .. .. .......................... . .... . . . .. ... . . ..... . . ................ . . ............. ....... . .. . ..... . . .. . .. . . . . .......... . . .. . . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 0 0 0 000 5 0 55555555 0 0 0 0 0 5 0 5 55 777777 77 7 3 7 0 333 0 0 22 55 2 888 7 1 99999999999 7 3 7 6666666 7 66 2 0 888888 6666 444444 44 888 2 66 44 7 2 0 00000 2 88 3 7 22 00 00 5 55555 8 0 7 7 0 22 4 3333333333 7 99 7 000000000000 7 0 7 11 000000 0 33 7 22 7 33 0 3 7 3 33 00 22 22222222222222222222222222 8 0000 0 7 2 00 777 7 3 33333 8 2 2222222222222222 2 0 5555555555555 8888888 0 88 2 88888 5 0 88 8 77 3 5 2 0 8888888888 7 0 33 7 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACCATTCGATAT--A---CTTCAAAGAATACAAAGCTG-CTNATCTACTCA---ACCCAAA-TAAGTAAAAC-TAAAAGATAA-CGCAA-TTNGC-----TGAG--TTCAA-TTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAATAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNCAA---AATCATGCGACAGTTTCTGCCA--T-TACAAG--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACAG-A----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGAT---------------TGTGTTTATAATA-TGA--------T----TAATTAT-AT----TAAT-CTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA--GAATACAAAGCTG-CTAATCTACTCA---ACCCAAA-TNANTAAAAC-TAAAAGATAA-CGCAA-TTAGC-----TGAGN-TTTAA-TTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAATAATAAATC----C-GTAAGTN-T-TGGAATAAA------AATGTATCAA---AATC-TGCGACAGTTTCTGCCA--T-TACAAA--AAGATACTAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TC----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTAAGA-TCTAGAAAAT-GAATCAGAATACAG-A----GTTGTTA-------------TAAAAAATAGAA-ATATGTTAA-AC-ATAACT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGA----------------TGTGTTTATAATA-TGA--------T----TAATTAT-AT----TAAT-CTGCCATA--TAAATGATATAA-AT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-NACTGTCCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGCAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTNTATAATCANTGCATTTNATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-ATAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAAGAATACAAAGCTGACTTATCTA-TCA---ACCCAAA-TAAGTAAAAC-TAAAAGACAAACACAAATTAGC-----TGAGTGTTCAA-TTATAAA-CTTTTGAAAACA-TCTTCTAA-ACAATAACAAATC----TTGTAAGTC-T-TGGAACAAA------GATGTGTCAA---AATC-TGTGACAGTTTCTGCCAAAT-TACAAAGAAAGATACTAAACCACT-GATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---T-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTATTATTGTATAAAGTCAAAA-TGAAATTACGA-ACTAGAAAAT-GAATTAGAATACAG-A----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATCATACTA---TTATGAGA-TATATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGA----------------TGTGTTTA-ATTA-TGA--------T----TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTTATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--TCAAAGATA--CGCAA-TTAGC-----AGAG--TTTAA-TTACAAA-TTCTTACAAA-A-TCTTATCA-ATAATGATAAATCTGTTC-ATAAA-----TGGAATAAGAATTTTAATGTATCAAACCAATG-TCC-----TTCTTGTCA--GACACCCG--AAGATACAAAACATTT-AATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTT-C------T-----GATGAAA-CACG-CCCCAC---------TA----TCTCATT-TCTCACA-TATCGCCTTTCTTATT-TATAAAGTGAAAA-TGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-T------GTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -TAAGAGATAA--ACAA-CTTGCGGAATTGAAT-TTCAA-TTA---A-GTTT-----A-A-T--------A-AATAATAAATC----C-GTAGGTG-TCTGGAATAAA------AATGTAACAA---AATTATGCAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cC-ATAACT--TATTATACTGCCGTTATGAGA-TA----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA--GAATACAAAGCTG-CTAATCTACTCA---ACCCAAA-TAAGTAAAAC-TAAAA-ACAA--ACAA-TTAGC-----TGAG--TTTAA-TTATAAC-ATTTTGAACA-A-TCTTCTGA-ACA-TAACAAATC----G-TTAAGTTCT-TGGAACAAA------A-TGTGTCAA---A-TC-TGTG-CAGTTTCTGCCAA-T-TACAAG--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----A-TGAAA-CACGACACCACAAAA-CTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTCTTATT-TAT----------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAAAA---AA-ATATGTTAA-AC-ATAATTCATTATATACTA---TTATGAGA-TATATAGAAAA-ATA-AACATTAGAATGAT-------------CATGATCTATCGA----------------TGTGTTTATAATA-TTA--------T----TAATTATGAT----TTAT-CTCCCATA--TAA----TATA-----TGTA-TACATATGCATTTCTTTT-GTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCATTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : AGC-----TTAG---TCAA-TTATAAAACTTTTGGAAA-AATCTTCTAACACAATAACAAATC----T-GTAAGTT-C-TTGAACAAA------GATGT-TCAA---A-TC-TGTG-CAGTTTCTGCCA--T-TACAAAG-AAGATACTAAACACCT-GATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTA---CTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCTTTTCTTATT-TATAAAGT-GAAA-TGAAATTATGA--CTAGAAAATTGAATTAAAAT-CAG-G----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--TATTATACTG---TTATGAGAATA-ATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGAT---------------TGTGTTTATAATA-TGA--------T----TAATTATCAT----TAAT-CTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT-------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagGA-ACAATAATAAATC----C-GAAAGTG-TCTGGAATAGA------AAGGTTACAA---AATTATGCAATAGCTG-TGACA--T-GACAGA--A-GATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTAC--TTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTTTT-GTT-AT--GTAACATTGCTTTTCTTAT-ATACAAAAT-AAAA-TGAAATTAAGA-TTTAAAGAA--AAATCAGAA-ACAG-A---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CTGATATATTG---CTACAAAA-TCTATAAGAAAT-TA-AAAATCAGAt
gi|5 : TATTACACTG---TTATGAGA-TATATAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGATGTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAAT-CTGGTATGGCTATATGAAAAAA-AA-T-TA-CATATATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTATC--TAA-TAATGTGTTTCTTAT-ATACAAATT-AAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAA-ACAG-ACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-ATA
gi|7 : atggcacgatatgtaATTCAATGTGGA---CTTCAAAGAACACAGAG-TA-TTGATCAATTTATATATCGAAAATAAG--AAACATAATAGA-AA-AGCAA-CTTGC-----AGA-A-TTTAA-TTTCAGG-CTCCTGCATA-A-TTTATTGA-ACAATAAGAAATC----C-ATAAGTG-TATGGAATTAA------AACGTTACAA---AATTATTCAATAA-CTGTGACG--T-GAC-AG--AAGATATAAAACACTT-CATG--TTGGATTGTAGAAA--GGT--TAAagaaattagaaatta
gi|8 : acaAAAAGATAA-C--AA-TCTGC-----GGAAA-TTTAAATTTTAAA-CTTCTGCTA----TTTATTGA-ACAACAATAAATC----C-GTAAGTG-T-TGGAATAAA------TATGTAACAA---AA
gi|9 : aacaatttaaatgcgggcttcaaaagaacacagagtaatccattttatacgttgacataacaaccttggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAaattatcaataactgtgacattgacggaagatataaagcacgaaatgtttgcaactgtgaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 1 1 222 1 33333333 1 1 1 222222 111 22222 1 111 2222 11 111 222 111111 1111 111111 1111111111 111111 111111 111 11 11 22222 1 1111111111 5555555555555 11 444444 22 1 11 11 22 444444444444444444444444 11 111 11111 11 333333333333333 777777777777777777 3333333 1 11 11111 1 11 3333333333 222222222 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 1 1 1 5 1 5 111 1 5 66666666 1 1 1 1 5 5 5 1 999 666666 000 22222 1 1 0 777 1111 8 11 6 111 4 333 6 1 5 77 9999 5 5 2 3 888 77 0 5 5 1 222222 8888 444444 22 66 0 4444444444 7 6 3 999999 777777 0 66 000 11 11 2 11111 6 0 6 6 1 99 0 8888888888 5 77 5 1111111111111 00 5 5 22 555555 3 77 6 99 6 55 1 3 6 1 88 44 11 8 888888888888888888888888 11 3 8 8 6 0 88 111 6 7 99999 0 3 88 666666666666666 333333333333333333 5555555 0 33 9 00000 0 2 88 6 3 3 6 4444444444 666666666 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 11 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . ... ...... ... ..... . . . ... .... . .. . ... . ... . . . .. .... . . . . ... .. . . . . ...... .... ...... .. .. . .......... . . . ...... ...... . .. ... .. .. . ..... . . . . . .. . .......... . .. . ............. .. . . .. ...... . .. . .. . .. . . . . .. .. .. . ........................ .. . . . . . .. ... . . ..... . . .. ............... .................. ....... . .. . ..... . . .. . . . . .......... ......... . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 5 0 0 000 0 0 00000000 0 0 0 0 0 5 0 0 333 888888 222 55555 0 2 5 555 2222 0 22 7 777 2 888 7 0 3 99 9999 4 7 3 0 000 11 2 0 0 1 888888 4444 444444 00 99 1 7777777777 1 6 0 444444 999999 4 11 000 00 00 5 55555 4 0 7 7 0 22 4 9999999999 7 99 7 6666666666666 99 0 7 11 000000 0 33 7 22 7 33 0 3 7 0 33 00 22 0 222222222222222222222222 88 8 0 0 7 3 00 777 7 3 33333 8 2 88 555555555555555 888888888888888888 8888888 0 88 8 88888 0 5 00 7 5 2 0 8888888888 777777777 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCNGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACCATTCGATAT--A---CTTCAAA-GAATACAAAGCTG-CTNATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCTGAG--T--TCAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGCCA--T-T-ACAA-G--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAA-GAATACAAAGCTGACTTATCTA-TCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGACAAACACAAATTAGCTGAG--TGTTCAATTATAAA-CTTTTGAAAACA-TCTTCTAA-ACAA-TAACAAATC----TTGTAAGTC-T-TGGAACAAA------GATGTGTC--AAAATC-TG--TGACAGTTTCTGCCAAAT-T-ACAA-AGAAAGATACTAAACCACT-GATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---T-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTATTATTGTATAAAGTCAAAA-TGAAATTACGA-ACTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATCATACTA---TTATGAGA-TATATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGA-TGTGTTT---A-AT--------TATGAT------------------TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTT-ATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--T---CAAAGATA--CGCAA-TTAGCAGAG--T--TTAATTACAAA-TTCTTACAAA-A-TCTTATCA-ATAA-TGATAAATCTGTTC-ATAAA-----TGGAATAAGAATTTTAATGTATC--AAACCAATGTCC-----TTCTTGTCA--GAC-ACCC-G--AAGATACAAAACATTT-AATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTT-C------T-----GATGAAA-CACG-CCCCAC---------TA----TCTCATT-TCTCACA-TATCGCCTTTCTTATT-TATAAAGTGAAAA-TGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-T------GTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -T---AAGAGATAA--ACAA-CTTGCGGAA--T--TGAATT-TCAA-TT------AA-G-TTT----A-ATAAATAATAAATC----C-GTAGGTG-TCTGGAATAAA------AATGTAAC--AAAATTATG--CAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cC-ATAACT--TATTATACTGCCGTTATGAGA-TA----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA---GAATACAAAGCTG-CTAATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAA-ACAA--ACAA-TTAGCTGAG--T--TTAATTATAAC-ATTTTGAACA-A-TCTTCTGA-ACA--TAACAAATC----G-TTAAGTTCT-TGGAACAAA------A-TGTGTC--AAA-TC-TG--TG-CAGTTTCTGCCAA-T-T-ACAA-G--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G------ATG-AAACACGACACCACAAAA-CTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTCTTATT-TAT----------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAA---AAAA-ATATGTTAA-AC-ATAATTCATTATATACTA---TTATGAGA-TATATAGAAAA-ATA-AACATTAGAATGA-------------TCATGATCTATCGA-TGTGTTT---ATAA--------TATTAT------------------TAATTATGAT----TTA-TCTCCCATA--TA----ATATA-----TGTA-TACATATGCATTTC-TTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCA-TTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : GCTTAG--T---CAATTATAAAACTTTTGGAAA-AATCTTCTAACACAA-TAACAAATC----T-GTAAGTT-C-TTGAACAAA------GATGTTC----AAATC-TG--TG-CAGTTTCTGCCA--T-T-ACAAAG--AAGATACTAAACACCT-GATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTA---CTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCTTTTCTTATT-TATAAAGT-GAAA-TGAAATTATGA--CTAGAAAATTGAATTAAAAT-CA-GG----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--TATTATACTG---TTATGAGAATA-ATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTT---ATAA--------TATGAT------------------TAATTATCAT----TAA-TCTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT--------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagaGA-ACAA-TAATAAATC----C-GAAAGTG-TCTGGAATAGA------AAGGTTAC--AAAATTATG--CAATAGCTG-TGACA--T-G-ACA--G--AAGATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTAC--TTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTTTT-GTT-AT--GTAACATTGCTTTTCTTAT-ATACAAAAT-AAAA-TGAAATTAAGA-TTTAAAGAA--AAATCAGAA-ACA-GA---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CTGATATATTG---CTACAAAA-TCTATAAGAAAT-TA-AAAATCAGAt
gi|5 : TATTACACTG---TTATGAGA-TATATAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAA-TCTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTATC--TAA-TAATGTGTTTCTTAT-ATACAAATT-AAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAA-ACA-GACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-ATA
gi|7 : atggcacgatatgtaACAATTCAATGTGGA---CTTCAAA-GAACACAGAG-TA-TTGATCAATTTATATATCG----AAAATAAG--AAACAT---AATAGA-AA-AGCAA-CTTGCAGAA--T--TTAATTTCAGG-CTCCTGCATA-A-TTTATTGA-ACAA-TAAGAAATC----C-ATAAGTG-TATGGAATTAA------AACGTTAC--AAAATTATT--CAATAA-CTGTGACG--T-G-AC-A-G--AAGATATAAAACACTT-CATG--TTGGATTGTAGAAA--GGT--TAAagaaattagaaatta
gi|8 : ---CTTCAAAAGAACACAGAG-----TAATCCATTTT---ATACGTTGACA-TAAC--AACC-TTGGAAAAGATAA-C--AA-TCTGCGGAAATT--TAAATTTTAAA-CTTCTGCTA----TTTATTGA-ACAA-CAATAAATC----C-GTAAGTG-T-TGGAATAAA------TATGTAACAAAAAATTAT---CAATAA-CTGTGACA--T-TGAC-G-G--AAGATATAAAGCACGA-AATG--TTTG
gi|9 : aacaatttaaatgcgggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAcaactgtgaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 1 1 222 1 33333333 1 1 1 222222 111 22222 111 2222 11 111 222 111111 1111 111111 1111111111 111111 111111 11 11 22222 1 1111111111 5555555555555 11 444444 22 1 11 11 22 444444444444444444444444 11 111 11111 11 333333333333333 777777777777777777 3333333 1 11 11111 1 11 3333333333 222222222 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 1 1 1 5 1 5 111 1 5 66666666 1 1 1 1 5 5 5 1 7 1 666666 000 22222 1 1 3 777 1111 8 11 6 111 4 333 6 1 1 99 77 1 5 5 2 3 888 77 0 5 5 1 222222 8888 444444 22 66 0 4444444444 7 6 1 999999 777777 0 66 888 11 11 2 11111 6 0 6 6 1 99 0 8888888888 5 77 5 1111111111111 00 5 5 22 555555 3 77 6 99 6 55 1 3 6 1 88 44 11 8 888888888888888888888888 11 3 8 8 6 0 88 111 6 7 99999 0 3 88 666666666666666 333333333333333333 5555555 0 33 9 00000 0 2 88 6 3 3 6 4444444444 666666666 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 11 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . . . ...... ... ..... . . . ... .... . .. . ... . ... . . . .. .. . . . . . ... .. . . . . ...... .... ...... .. .. . .......... . . . ...... ...... . .. ... .. .. . ..... . . . . . .. . .......... . .. . ............. .. . . .. ...... . .. . .. . .. . . . . .. .. .. . ........................ .. . . . . . .. ... . . ..... . . .. ............... .................. ....... . .. . ..... . . .. . . . . .......... ......... . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 5 0 0 000 0 0 00000000 0 0 0 0 0 5 0 0 3 0 888888 222 55555 2 2 2 555 2222 0 22 7 777 2 888 7 0 0 22 99 0 4 7 3 0 000 11 2 0 0 1 888888 4444 444444 00 99 1 7777777777 1 6 0 444444 999999 4 11 999 00 00 5 55555 4 0 7 7 0 22 4 9999999999 7 99 7 6666666666666 99 0 7 11 000000 0 33 7 22 7 33 0 3 7 0 33 00 22 0 222222222222222222222222 88 8 0 0 7 3 00 777 7 3 33333 8 2 88 555555555555555 888888888888888888 8888888 0 88 8 88888 0 5 00 7 5 2 0 8888888888 777777777 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCNGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GTA-TATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAA-GAATACAAAGCTGACTTATCTAT-CA---ACCC----AAA-TAAGTAAAAC-T---AAAAGACAAACACAAATTAGCTGAG--TGTTCAATTATAAA-CTTTTGAAAACA-TCTTCTAA-ACAA-TAACAAATC----TTGTAAGTC-T-TGGAACAAA------GATGTGTC--AAAATC-TG--TGACAGTTTCTGCCAAAT-T-ACAA-AGAAAGATACTAAACCACT-GATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---T-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTATTATTGTATAAAGTCAAAA-TGAAATTACGA-ACTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATCATACTA---TTATGAGA-TATATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGA-TGTGTTT---A-AT--------TATGAT------------------TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTT-ATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--T---CAAAGATA--CGCAA-TTAGCAGAG--T--TTAATTACAAA-TTCTTACAAA-A-TCTTATCA-ATAA-TGATAAATCTGTTC-ATAAA-----TGGAATAAGAATTTTAATGTATC--AAACCAATGTCC-----TTCTTGTCA--GAC-ACCC-G--AAGATACAAAACATTT-AATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTT-C------T-----GATGAAA-CACG-CCCCAC---------TA----TCTCATT-TCTCACA-TATCGCCTTTCTTATT-TATAAAGTGAAAA-TGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-T------GTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -T---AAGAGATAA--ACAA-CTTGCGGAA--T--TGAATT-TCAA-TT------AA-G-TTT----A-ATAAATAATAAATC----C-GTAGGTG-TCTGGAATAAA------AATGTAAC--AAAATTATG--CAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cC-ATAACT--TATTATACTGCCGTTATGAGA-TA----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA---GAATACAAAGCTG-CTAATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAA-ACAA--ACAA-TTAGCTGAG--T--TTAATTATAAC-ATTTTGAACA-A-TCTTCTGA-ACA--TAACAAATC----G-TTAAGTTCT-TGGAACAAA------A-TGTGTC--AAA-TC-TG--TG-CAGTTTCTGCCAA-T-T-ACAA-G--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G------ATG-AAACACGACACCACAAAA-CTCGTAATCTTCTCATT-TC--GTA-TATCGCCTTTCTTATT-TAT----------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAA---AAAA-ATATGTTAA-AC-ATAATTCATTATATACTA---TTATGAGA-TATATAGAAAA-ATA-AACATTAGAATGA-------------TCATGATCTATCGA-TGTGTTT---ATAA--------TATTAT------------------TAATTATGAT----TTA-TCTCCCATA--TA----ATATA-----TGTA-TACATATGCATTTC-TTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCA-TTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : --TCAATTATAAAACTTTTGGAAA-AATCTTCTAACACAA-TAACAAATC----T-GTAAGTT-C-TTGAACAAA------GATGTTC----AAATC-TG--TG-CAGTTTCTGCCA--T-T-ACAAAG--AAGATACTAAACACCT-GATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTA---CTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GTA-TATCGCTTTTCTTATT-TATAAAGT-GAAA-TGAAATTATGA--CTAGAAAATTGAATTAAAAT-CA-GG----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--TATTATACTG---TTATGAGAATA-ATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTT---ATAA--------TATGAT------------------TAATTATCAT----TAA-TCTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT--------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagagcttagGA-ACAA-TAATAAATC----C-GAAAGTG-TCTGGAATAGA------AAGGTTAC--AAAATTATG--CAATAGCTG-TGACA--T-G-ACA--G--AAGATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTAC--TTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTTTT-GTT-AT--GTAACATTGCTTTTCTTAT-ATACAAAAT-AAAA-TGAAATTAAGA-TTTAAAGAA--AAATCAGAA-ACA-GA---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CTGATATATTG---CTACAAAA-TCTATAAGAAAT-TA-AAAATCAGAt
gi|5 : TATTACACTG---TTATGAGA-TATATAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAA-TCTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTATC--TAA-TAATGTGTTTCTTAT-ATACAAATT-AAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAA-ACA-GACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-ATA
gi|7 : atggcacgatatgtaACAATTCAATGTGGA---CTTCAAA-GAACACAGAG-TA-TTGATCAATTTATATATCG----AAAATAAG--AAACAT---AATAGA-AA-AGCAA-CTTGCAGAA--T--TTAATTTCAGG-CTCCTGCATA-A-TTTATTGA-ACAA-TAAGAAATC----C-ATAAGTG-TATGGAATTAA------AACGTTAC--AAAATTATT--CAATAA-CTGTGACG--T-G-AC-A-G--AAGATATAAAACACTT-CATG--TTGGATTGTAGAAA--GGT--TAAagaaattagaaatta
gi|8 : ---CTTCAAAAGAACACAGAG-----TAATCCATTTT---ATACGTTGACA-TAAC--AACC-TTGGAAAAGATAA-C--AA-TCTGCGGAAATT--TAAATTTTAAA-CTTCTGCTA----TTTATTGA-ACAA-CAATAAATC----C-GTAAGTG-T-TGGAATAAA------TATGTAACAAAAAATTAT---CAATAA-CTGTGACA--T-TGAC-G-G--AAGATATAAAGCACGA-AATG--TTTG
gi|9 : aacaatttaaatgcgggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAcaactgtgaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 1 1 222 1 33333333 1 1 1 222222 111 22222 111 2222 11 111 222 111111 1111 111111 1111111111 111111 111111 11 11 22222 1 1111111111 5555555555555 11 444444 11111 1 1 11 11 22 444444444444444444444444 11 111 11111 11 333333333333333 777777777777777777 3333333 1 11 11111 1 11 3333333333 222222222 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 1 1 1 5 1 5 111 1 5 66666666 1 1 1 1 5 5 5 1 7 1 666666 000 22222 1 1 3 777 1111 8 11 6 111 4 333 6 1 3 99 77 1 5 5 2 3 888 77 0 5 5 1 222222 8888 444444 22 66 0 4444444444 7 6 1 999999 777777 0 66 888 11 11 2 11111 6 0 6 6 1 99 0 8888888888 5 77 5 1111111111111 00 5 5 22 555555 3 1 11 6 00000 8 1 3 6 1 88 44 11 8 888888888888888888888888 11 3 8 8 6 0 88 111 6 7 99999 0 3 88 666666666666666 333333333333333333 5555555 0 33 9 00000 0 2 88 6 3 3 6 4444444444 666666666 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 11 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . . . ...... ... ..... . . . ... .... . .. . ... . ... . . . .. .. . . . . . ... .. . . . . ...... .... ...... .. .. . .......... . . . ...... ...... . .. ... .. .. . ..... . . . . . .. . .......... . .. . ............. .. . . .. ...... . . .. . ..... . . . . . .. .. .. . ........................ .. . . . . . .. ... . . ..... . . .. ............... .................. ....... . .. . ..... . . .. . . . . .......... ......... . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 5 0 0 000 0 0 00000000 0 0 0 0 0 5 0 0 3 0 888888 222 55555 2 2 2 555 2222 0 22 7 777 2 888 7 0 7 22 99 0 4 7 3 0 000 11 2 0 0 1 888888 4444 444444 00 99 1 7777777777 1 6 0 444444 999999 4 11 999 00 00 5 55555 4 0 7 7 0 22 4 9999999999 7 99 7 6666666666666 99 0 7 11 000000 0 0 77 7 55555 0 0 3 7 0 33 00 22 0 222222222222222222222222 88 8 0 0 7 3 00 777 7 3 33333 8 2 88 555555555555555 888888888888888888 8888888 0 88 8 88888 0 5 00 7 5 2 0 8888888888 777777777 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAA-GAATACAAAGCTGACTTATCTAT-CA---ACCC----AAA-TAAGTAAAAC-T---AAAAGACAAACACAAATTAGCTGAG--TGTTCAATTATAAA-CTTTTGAAAACA-TCTTCTAA-ACAA-TAACAAATC----TTGTAAGTC-T-TGGAACAAA------GATGTGTC--AAAATC-TG--TGACAGTTTCTGCCAAAT-T-ACAA-AGAAAGATACTAAACCACT-GATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---T-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GT-ATATCGCCTTTATTATTGTATAAAGTCAAAA-TGAAATTACGA-ACTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATCATACTA---TTATGAGA-TATATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGA-TGTGTTT---A-AT--------TATGAT------------------TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTT-ATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--T---CAAAGATA--CGCAA-TTAGCAGAG--T--TTAATTACAAA-TTCTTACAAA-A-TCTTATCA-ATAA-TGATAAATCTGTTC-ATAAA-----TGGAATAAGAATTTTAATGTATC--AAACCAATGTCC-----TTCTTGTCA--GAC-ACCC-G--AAGATACAAAACATTT-AATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTT-C------T-----GATGAAA-CACG-CCCCAC---------TA----TCTCATT-TCTCAC-ATATCGCCTTTCTTATT-TATAAAGTGAAAA-TGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-T------GTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -T---AAGAGATAA--ACAA-CTTGCGGAA--T--TGAATT-TCAA-TT------AA-G-TTT----A-ATAAATAATAAATC----C-GTAGGTG-TCTGGAATAAA------AATGTAAC--AAAATTATG--CAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cC-ATAACT--TATTATACTGCCGTTATGAGA-TA----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA---GAATACAAAGCTG-CTAATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAA-ACAA--ACAA-TTAGCTGAG--T--TTAATTATAAC-ATTTTGAACA-A-TCTTCTGA-ACA--TAACAAATC----G-TTAAGTTCT-TGGAACAAA------A-TGTGTC--AAA-TC-TG--TG-CAGTTTCTGCCAA-T-T-ACAA-G--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G------ATG-AAACACGACACCACAAAA-CTCGTAATCTTCTCATT-TC--GT-ATATCGCCTTTCTTATT-TAT----------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAA---AAAA-ATATGTTAA-AC-ATAATTCATTATATACTA---TTATGAGA-TATATAGAAAA-ATA-AACATTAGAATGA-------------TCATGATCTATCGA-TGTGTTT---ATAA--------TATTAT------------------TAATTATGAT----TTA-TCTCCCATA--TA----ATATA-----TGTA-TACATATGCATTTC-TTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCA-TTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : --TCAATTATAAAACTTTTGGAAA-AATCTTCTAACACAA-TAACAAATC----T-GTAAGTT-C-TTGAACAAA------GATGTTC----AAATC-TG--TG-CAGTTTCTGCCA--T-T-ACAAAG--AAGATACTAAACACCT-GATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTA---CTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GT-ATATCGCTTTTCTTATT-TATAAAGT-GAAA-TGAAATTATGA--CTAGAAAATTGAATTAAAAT-CA-GG----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--TATTATACTG---TTATGAGAATA-ATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTT---ATAA--------TATGAT------------------TAATTATCAT----TAA-TCTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT--------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagagcttagGA-ACAA-TAATAAATC----C-GAAAGTG-TCTGGAATAGA------AAGGTTAC--AAAATTATG--CAATAGCTG-TGACA--T-G-ACA--G--AAGATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTAC--TTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTT-TTGTT-AT--GTAACATTGCTTTTCTTA-TATACAAAAT-AAAA-TGAAATTAAGA-TTTAAAGAA--AAATCAGAA-ACA-GA---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CTGATATATTG---CTACAAAA-TCTATAAGAAAT-TA-AAAATCAGAt
gi|5 : TATTACACTG---TTATGAGA-TATATAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAA-TCTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTATC--TA-ATAATGTGTTTCTTAT-ATACAAATT-AAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAA-ACA-GACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-ATA
gi|7 : atggcacgatatgtaACAATTCAATGTGGA---CTTCAAA-GAACACAGAG-TA-TTGATCAATTTATATATCG----AAAATAAG--AAACAT---AATAGA-AA-AGCAA-CTTGCAGAA--T--TTAATTTCAGG-CTCCTGCATA-A-TTTATTGA-ACAA-TAAGAAATC----C-ATAAGTG-TATGGAATTAA------AACGTTAC--AAAATTATT--CAATAA-CTGTGACG--T-G-AC-A-G--AAGATATAAAACACTT-CATG--TTGGATTGTAGAAA--GGT--TAAagaaattagaaatta
gi|8 : ---CTTCAAAAGAACACAGAG-----TAATCCATTTT---ATACGTTGACA-TAAC--AACC-TTGGAAAAGATAA-C--AA-TCTGCGGAAATT--TAAATTTTAAA-CTTCTGCTA----TTTATTGA-ACAA-CAATAAATC----C-GTAAGTG-T-TGGAATAAA------TATGTAACAAAAAATTAT---CAATAA-CTGTGACA--T-TGAC-G-G--AAGATATAAAGCACGA-AATG--TTTG
gi|9 : aacaatttaaatgcgggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAcaactgtgaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 1 1 222 1 33333333 1 1 1 222222 111 22222 111 2222 11 111 222 111111 1111 111111 1111111111 111111 111111 11 11 22222 1 1111111111 5555555555555 11 444444 11111 1 1 11 11 22 444444444444444444444444 11 111 11111 11 333333333333333 777777777777777777 3333333 1 11 11111 1 11 3333333333 222222222 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 1 1 1 5 1 5 111 1 5 66666666 1 1 1 1 5 5 5 1 7 1 666666 000 22222 1 1 3 777 1111 8 11 6 111 4 333 6 1 3 99 77 1 5 5 2 3 888 77 0 5 5 1 222222 8888 444444 22 66 0 4444444444 7 6 1 999999 777777 0 66 888 11 11 2 11111 6 0 6 6 1 99 0 8888888888 5 77 5 1111111111111 00 5 5 22 555555 3 1 11 6 00000 8 1 3 6 1 88 44 11 8 888888888888888888888888 11 3 8 8 6 0 88 111 6 7 99999 0 3 88 666666666666666 333333333333333333 5555555 0 33 9 00000 0 2 88 6 3 3 6 4444444444 666666666 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 11 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . . . ...... ... ..... . . . ... .... . .. . ... . ... . . . .. .. . . . . . ... .. . . . . ...... .... ...... .. .. . .......... . . . ...... ...... . .. ... .. .. . ..... . . . . . .. . .......... . .. . ............. .. . . .. ...... . . .. . ..... . . . . . .. .. .. . ........................ .. . . . . . .. ... . . ..... . . .. ............... .................. ....... . .. . ..... . . .. . . . . .......... ......... . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 5 0 0 000 0 0 00000000 0 0 0 0 0 5 0 0 3 0 888888 222 55555 2 2 2 555 2222 0 22 7 777 2 888 7 0 7 22 99 0 4 7 3 0 000 11 2 0 0 1 888888 4444 444444 00 99 1 7777777777 1 6 0 444444 999999 4 11 999 00 00 5 55555 4 0 7 7 0 22 4 9999999999 7 99 7 6666666666666 99 0 7 11 000000 0 0 77 7 55555 0 0 3 7 0 33 00 22 0 222222222222222222222222 88 8 0 0 7 3 00 777 7 3 33333 8 2 88 555555555555555 888888888888888888 8888888 0 88 8 88888 0 5 00 7 5 2 0 8888888888 777777777 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAA-GAATACAAAGCTGACTTATCTAT-CA---ACCC----AAA-TAAGTAAAAC-T---AAAAGACAAACACAAATTAGCTGAG--TGTTCAATTATAAA-CTTTTGAAAACA-TCTTCTAA-ACAA-TAACAAATC----TTGTAAGTC-T-TGGAACAAA------GATGTGTC--AAAATC-TG--TGACAGTTTCTGCCAAAT-T-ACAA-AGAAAGATACTAAACCACT-GATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---T-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GT-ATATCGCCTTTATTATTGTATAAAGTCAAAA-TGAAATTACGA-ACTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATCATACTA---TTATGAGA-TATATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGA-TGTGTTT---A-AT--------TATGAT------------------TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTT-ATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--T---CAAAGATA--CGCAA-TTAGCAGAG--T--TTAATTACAAA-TTCTTACAAA-A-TCTTATCA-ATAA-TGATAAATCTGTTC-ATAAA-----TGGAATAAGAATTTTAATGTATC--AAACCAATGTCC-----TTCTTGTCA--GAC-ACCC-G--AAGATACAAAACATTT-AATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTT-C------T-----GATGAAA-CACG-CCCCAC---------TA----TCTCATT-TCTCAC-ATATCGCCTTTCTTATT-TATAAAGTGAAAA-TGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-T------GTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -T---AAGAGATAA--ACAA-CTTGCGGAA--T--TGAATT-TCAA-TT------AA-G-TTT----A-ATAAATAATAAATC----C-GTAGGTG-TCTGGAATAAA------AATGTAAC--AAAATTATG--CAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cC-ATAACT--TATTATACTGCCGTTATGAGA-TA----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA---GAATACAAAGCTG-CTAATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAA-ACAA--ACAA-TTAGCTGAG--T--TTAATTATAAC-ATTTTGAACA-A-TCTTCTGA-ACA--TAACAAATC----G-TTAAGTTCT-TGGAACAAA------A-TGTGTC--AAA-TC-TG--TG-CAGTTTCTGCCAA-T-T-ACAA-G--AAGATACAAAACACCT-GATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G------ATG-AAACACGACACCACAAAA-CTCGTAATCTTCTCATT-TC--GT-ATATCGCCTTTCTTATT-TAT----------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAA---AAAA-ATATGTTAA-AC-ATAATTCATTATATACTA---TTATGAGA-TATATAGAAAA-ATA-AACATTAGAATGA-------------TCATGATCTATCGA-TGTGTTT---ATAA--------TATTAT------------------TAATTATGAT----TTA-TCTCCCATA--TA----ATATA-----TGTA-TACATATGCATTTC-TTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCA-TTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : --TCAATTATAAAACTTTTGGAAA-AATCTTCTAACACAA-TAACAAATC----T-GTAAGTT-C-TTGAACAAA------GATGTTC----AAATC-TG--TG-CAGTTTCTGCCA--T-T-ACAAAG--AAGATACTAAACACCT-GATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATTA---CTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT-TC--GT-ATATCGCTTTTCTTATT-TATAAAGT-GAAA-TGAAATTATGA--CTAGAAAATTGAATTAAAAT-CA-GG----ATTGTTA-------------TAAAAAATA-------TGTTAA-AC-ATAATT--TATTATACTG---TTATGAGAATA-ATAGAAAATA-A-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTT---ATAA--------TATGAT------------------TAATTATCAT----TAA-TCTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT--------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagagcttagGA-ACAA-TAATAAATC----C-GAAAGTG-TCTGGAATAGA------AAGGTTAC--AAAATTATG--CAATAGCTG-TGACA--T-G-ACA--G--AAGATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTAC--TTTT-TTGTCGAA-----AATTAAAACACA-CA--AC-----TTCTTAATCTT-TTGTT-AT--GTAACATTGCTTTTCTTA-TATACAAAAT-AAAA-TGAAATTAAGA-TTTAAAGAA--AAATCAGAA-ACA-GA---------CA-------------TGGAGATTAGAATGTACATTAA-AA-ACAAAT-CTGATATATTG---CTACAAAA-TCTATAAGAAAT-TA-AAAATCAGAt
gi|5 : TATTACACTG---TTATGAGA-TATATAGAAAA-ATA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAA-TCTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCT------GTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTTTT-GTTATC--TA-ATAATGTGTTTCTTAT-ATACAAATT-AAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAA-ACA-GACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAAACT-ATA
gi|7 : atggcacgatatgtaACAATTCAATGTGGA---CTTCAAA-GAACACAGAG-TA-TTGATCAATTTATATATCG----AAAATAAG--AAACAT---AATAGA-AA-AGCAA-CTTGCAGAA--T--TTAATTTCAGG-CTCCTGCATA-A-TTTATTGA-ACAA-TAAGAAATC----C-ATAAGTG-TATGGAATTAA------AACGTTAC--AAAATTATT--CAATAA-CTGTGACG--T-G-AC-A-G--AAGATATAAAACACTT-CATG--TTGGATTGTAGAAA--GGT--TAAagaaattagaaatta
gi|8 : ---CTTCAAAAGAACACAGAG-----TAATCCATTTT---ATACGTTGACA-TAAC--AACC-TTGGAAAAGATAA-C--AA-TCTGCGGAAATT--TAAATTTTAAA-CTTCTGCTA----TTTATTGA-ACAA-CAATAAATC----C-GTAAGTG-T-TGGAATAAA------TATGTAACAAAAAATTAT---CAATAA-CTGTGACA--T-TGAC-G-G--AAGATATAAAGCACGA-AATG--TTTG
gi|9 : aacaatttaaatgcgggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAcaactgtgaa
blockSeqs : A T T T . T G . C G . A A A A . T . C A C GGA AAA CTGC A T T TAT GTTG A TA A TGG T CG . A A AT . T A A C C AA TA C A T TGTTC GTC AATTTT AT AA TATGCAAT T T T GAC AAAG TA C GA TA C GCAC A C . T G . ATTGTT A CT C TGTCGAAA A A CC AAAAAC T C CA A TCAC A G G A A CT TT T G CATGGATATTAAAATGCATATACT AA A T T A CA CCG A T ATA T TT ATAATAAGATGTTTT AATGAATGTGCTTTGCAA ATAATG . GC A ATATA T C C T A G A GTACATGTAT TGCATTTA T T G . AT . T T C GAT A T . TT . T TG T T T TT T A G AT A A A A A
blockSeqs : . A A AA TAT G A T . . . TA . . T AG . T G . . G A . T A A TC . . T C TCT . AA . TATTCAAT T C C ATT CCG A T . . C CT A C . . T . TTTTAA . . . GTCGAAA A . CC AAAAC G C CA . GTA A G . . C T T T . GTTGCAA AT G . . . C . . T TAA T T ATAA . GAT . . T AAAT . C C . T A T GTTGCAT . T T . . . . T . . AT . T . T . T . T T . T T . . . T . T A A
blockSeqs : . . A C T . . . . . . C A . A T . . T A . T G G TC . . C G GTC . GT . AATGTCC T C C TTG AAG G T . . . C G . . . T . TC . . . GTCGAAA A . CC T G C CA . GT . A . . T T A A . ATTGTTA AA A . . . A . . T TTA . T ATAA . CAT . . . . . . T . T G T GATGCAT . . . . . . . . T . . . T . . . . . . T . . . . . . A . .
blockSeqs : . . . . T A . T A . . C T . C C A AT . . C T GTA . TC . TATCAAT C G A TT AG G C . . G . . . G . TT . . . TG A . . T T T TG . GT . T . . A . . A . CA . . . . . . . . . ATA . T . T .
blockSeqs : . . . C . T G . . T T . T C A AT . . T C TC . TA . CTGTGC . G A TG AG C G . . G . GT . . . G . . . T T . G . TA . . . . A . . . . . . . . .
blockSeqs : . A . . . . . . . . G C GT . TA . CTGTGC . . A TG GG A G T . . . . . . . . .
blockSeqs : . . T C . . AA .
blockSeqCons : A** ** A** C***** GTC* TG**** AAG*** N** ** GTCGAAA****** AAAAC* T* N* C* NTA** GTGCAT****
originalCons : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAA-CGCAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-ACAA-TAACAAATC----C-GTAAGTG-T-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCA--T-T-ACAA-G--AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-T------G-----AATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGA-TCTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATT-ATATTATACTG---TTATGAGA-TATATAGAAAATATA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
finalCons : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAAA--CAA-TTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAAA--TCTTCTGA-ACAA-TAACAAATCC-----GTAAGTGTC-TGGAATAAA------AATGTNNC--AAAATCATG--CGACAGTTTCTGNCATG----ACAAG---AAGATACAAAACACCT-GATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATTA---C-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-TGTCGAAA------ATGAAAACACG-CACCACAAAAC-TCNTAATCTTCTCGTT-TC--GT-ATATCGCCTTTCTTATTATATAAAGT-AAAA-TGAAATTANGAT-CTAGAAAAT-GAATTAGAAN-CA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-AC-ATAATTC-TATTATACTG---TTATGAGA-TATATAGAAAANTA--AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAA-TCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGTGCAT----GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA
Alignments
lowQualScore : 1 1 1 222 1 33333333 1 1 1 222222 111 22222 111 2222 11 111 111 111 111111 11 111111 11 2222222 11 11 111 1 1 1111111111 11 1 333333 11 444444 11 1 2 11 11 444444444444444444444444 1 111 11111 11 333333333333333 777777777777777777 3333333 1 11 11111 1 11 4444444444 222222222 1 1 11 1 1 1 1111 1 1 1 11 1 111 1 1 11 1 1 11
lowQualScore : 5 1 1 1 5 1 5 111 1 5 66666666 1 1 1 1 5 5 5 1 7 1 666666 000 22222 1 1 3 777 1111 8 11 6 111 0 4 111 1 3 99 77 1 5 5 2 3 888 77 0 5 5 1 5 111 444444 22 66 0 00 777777 0 5 1 99 0 2222222 66 0 888 11 11 2 777 0 6 0 6 6 1 99 0 8888888888 5 33 1 444444 77 5 22 555555 3 6 0 55 6 7 8 1 0 1 88 44 99 8 888888888888888888888888 11 3 8 8 5 99 111 6 11111 0 3 88 666666666666666 333333333333333333 5555555 0 33 9 00000 0 2 88 6 3 3 6 8888888888 666666666 7 3 0 0 33 0 3 0 0 7777 0 3 0 66 0 3 33 3 3 0 111 3 0 0 33 0 0 11 3 3 0
lowQualScore : . . . . . . . ... . . ........ . . . . . . . . . . ...... ... ..... . . . ... .... . .. . ... . . ... . . .. .. . . . . . ... .. . . . . . ... ...... .. .. . .. ...... . . . .. . ....... .. . ... .. .. . ... . . . . . . .. . .......... . .. . ...... .. . .. ...... . . . .. . . . . . . .. .. .. . ........................ .. . . . . .. ... . ..... . . .. ............... .................. ....... . .. . ..... . . .. . . . . .......... ......... . . . . .. . . . . .... . . . .. . . .. . . . ... . . . .. . . .. . . .
lowQualScore : 5 0 0 0 5 0 0 000 0 0 00000000 0 0 0 0 0 5 0 0 3 0 888888 222 55555 2 2 2 555 2222 0 22 7 777 3 2 777 0 7 22 99 0 4 7 3 0 000 11 2 0 0 1 0 444 444444 00 99 1 55 666666 7 7 0 33 7 3333333 11 4 999 00 00 5 555 0 4 0 7 7 0 22 4 9999999999 7 66 4 777777 99 7 11 000000 0 7 7 88 7 3 0 0 0 0 33 00 00 0 222222222222222222222222 88 8 0 0 0 22 777 7 00000 8 2 88 555555555555555 888888888888888888 8888888 0 88 8 88888 0 5 00 7 5 2 0 0000000000 777777777 3 2 0 0 88 0 2 0 0 5555 0 2 0 55 0 2 88 2 2 0 000 2 0 0 88 8 0 00 2 2 2
consensus : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAAACA---ATTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-AC-AATAACAAATCC-GTAAGTGTCTGGAATAAAAAT------GTNNC--AAAATCATGCGACAGTCTCT-GNCA--TGACAA--G--AAGATACAAAACAC-CTGATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATT---AC-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-TGTCGAAAATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT--TCGT-ATATCGCCTTTCTTATTATATAAAGT-AAAATGAAATTANGA-TCTAGAAAAT-GAATTAGAAT-CA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-ACATAATTCTAT--TATACTG---TTATGAGATAT-ATAGAAAAT-TA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAAT-CTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGGT---TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
Reference ( family-3058 ) : NTATATAAACATTNATANCAATNAAATGTTATCTNTAGGATAAACTTNTCGTAGCAAAATTCTTTATGANATTNTCGTAGNAAAAAAATTNATCACCACCTCTACCACAAGAGAATGTGNTCAAAACNATTCGATAT--A---CTTCAAA-GAACACAGAGCTG-CTAATCTATTCA---ACCC----AAA-TAAGTAAAAC-T---AAAAGATAAACA---ATTNGCGGAG--T--TNAATTATAAA-CTTTTGNAAA-A-TCTTCTGA-AC-AATAACAAATCC-GTAAGTGTCTGGAATAAAAAT------GTNNC--AAAATCATGCGACAGTTTCT-GNCA--TGACAA--G--AAGATACAAAACAC-CTGATN--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATT---AC-GGAGACTTTTTAAAGTCAAACA-T-ACANTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-TGTCGAAAATGAAAACACG-CACCACAAAA-CTCNTAATCTTCTCGTT--TCGT-ATATCGCCTTTCTTATTATATAAAGT-AAAATGAAATTANGA-TCTAGAAAAT-GAATTAGAAN-CA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-ACATAATTCTAT--TATACTG---TTATGAGATAT-ATAGAAAAN-TA-AACATTAGAATGATACCAAATCATTTTCATGATCTATCGATTGTGTTT---ATAA--------TATGAT------------------TAATTAT-AT----TAAT-CTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTCTTGG----TGCATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCA-TTT-ATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATA-TTTG-ACTAG-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-T-GTTT-TT-G--TTNGAT-GAA-NTAAATAAGATGAAAAAAAAA
gi|1 : TATATAAAC-TTAATAACAATAAAATGTTATCTATAA-ATAAACTTATC-TAGCAAAATTCTTTATGATATTCTCGTAGCAAAAAAATTTATCACCACC-CTACCACAAGAGAATGTGGTCAAAACTATTCGATAT--AAACTTTCAAA-GAATACAAAGCTGACTTATCTAT-CA---ACCC----AAA-TAAGTAAAAC-T---AAAAGACAAACACAAATTAGCTGAG--TGTTCAATTATAAA-CTTTTGAAAACA-TCTTCTAA-AC-AATAACAAATCTTGTAAGTCT-TGGAACAAAGAT------GTGTC--AAAATC-TGTGACAGTTTCT-GCCAAATTACAA--AGAAAGATACTAAACCA-CTGATTATTTTATTTGCAAAAA--TGT--AAAAGATATCTGGAAAATT---AT-GGAGACTTTTTAAA-TCAAACAAT-ACATTAGGAAAACACA----TT----GTCA-TTGGTTAC--TTTT-TG-----AATGAAAACACG-CACCACAAAAACTCGTAATCTTCTCATT--TCGT-ATATCGCCTTTATTATTGTATAAAGTCAAAATGAAATTACGA-ACTAGAAAAT-GAATTAGAATACA-GA----GTTGTTA-------------TAAAAAATAAAA-ATATGTTAA-ACATAATTATAT--CATACTA---TTATGAGATAT-ATAGAAAATATATAACATTAGAATGATACCAAATCATTTTCATGATCTATCGAT-GTGTTT---A-AT--------TATGAT------------------TAATTAT-CA----TAATTCTGCCATA--TAAATGATATAATAT-TGTA-TACATATGCATTTCTTTTTGTGAATCATGTACATAAGTAAGGTCCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGGGCAAATGGACTC-TG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCATTGCATTTT-ATACTGATGAATATATGTGTA-TTTATGATATCAATACTTTAT-CGAAATACTT--GAATTACATTTTATATTTAAAATATA-TTTG-ACTAG-TCG-CAAAAATATTATAGTATTCATTATACTCCTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATATTGTTCATTGA-TTTA-TGGTTT-TT-G--TTGAAT-GAATTTAAATAAGATTAAAAAAAAA
gi|10 : tAA-TTACTAAAA--T---CAAAGATACGCA---ATTAGCAGAG--T--TTAATTACAAA-TTCTTACAAA-A-TCTTATCA-AT-AATGATAAATCT-GTTCATAAATGGAATAAGAATTTTAATGTATC--AAACCAATGT--C--CTTCTTGTCA---GACACCCG--AAGATACAAAACAT-TTAATC--TTTg
gi|11 : CATA----TC----GTCA-TTAGTTAC--TTTTCTG------ATG-AAACACG-CCCCAC---------TA----TCTCATTTCTCAC-ATATCGCCTTTCTTATT-TATAAAGTGAAAATGAAATTAAGA--CTAG
gi|12 : AAACA-TTACAGTG---AAACAGAATTGTT----GTTA-ATGGTTACCTTTTT-TGTCGAAAATCGAAACATG-CA--AC-----TTCTTAATCTT
gi|13 : caagaaatgtatgccaggGTGAGGTCCTATGTAAAGGGA-GACTGTTCCATTTTTTTTTGTTTACCTGGGGCCAAAAGGACTCATGGT---TGCATGTGGCAGTGTGCCTTACAGGTAAAgtg
gi|14 : -T---AAGAGATAAACA---ACTTGCGGAA--T--TGAATT-TCAA-TT------AA-G-TTT----A-ATAAATAATAAATCC-GTAGGTGTCTGGAATAAAAAT------GTAAC--AAAATTATGCAAa
gi|16 : aTTTTGTGAATCATGTACATAAGTGAGGTCGTATGTGAAGGGA-TACTGTTCCTTCACATTTTGTTTACCTt
gi|17 : cCATAACT-TAT--TATACTGCCGTTATGAGATA-----------------CACTAGAATGATACCAAATCATTTTCATGATCT
gi|2 : atTATATAAACATTTATATTAATTAAATATT-TCTTTAGGATA---TTCTCGTAGCAAAA--------AAAATTATCGTAGAAAAAAAATTAATCAC-ACCTCTAC-ACAAGAAAATGTGCTCAAA--CATTCGATAT--A---CTTCA---GAATACAAAGCTG-CTAATCTACTCA---ACCC----AAA-TAAGTAAAAC-T---AAAA-ACAAACA---ATTAGCTGAG--T--TTAATTATAAC-ATTTTGAACA-A-TCTTCTGA-AC-A-TAACAAATCG-TTAAGTTCTTGGAACAAAA-T------GTGTC--AAA-TC-TGTG-CAGTTTCT-GCCAA-TTACAA--G--AAGATACAAAACAC-CTGATT--TTTGATTGCAAAAA--TGT--AAAAGATATCTGGAAAATT---AC-TGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----TT----GTCA-TTGGTTAC--TTTT-TG------ATG-AAACACGACACCACAAAA-CTCGTAATCTTCTCATT--TCGT-ATATCGCCTTTCTTATT-TAT---------------TTACGACTATAGAAAAT-GAATTAGAAT-CAGGA----GTTGCAA-------------TAAAA---AAAA-ATATGTTAA-ACATAATTC-ATTATATACTA---TTATGAGATAT-ATAGAAAAA-TA-AACATTAGAATGA-------------TCATGATCTATCGA-TGTGTTT---ATAA--------TATTAT------------------TAATTATGAT----TTAT-CTCCCATA--TA----ATATA-----TGTA-TACATATGCATTTC-TTTTGTGAATCATGTACATAAGTGAGGTCCTATGTGAAGGGA-GACTGTCCCTTCACATTTTGTTTACCTAGGGGCAAATGGACTCTTGGTACATGTATGTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTGCCTATATAATCAATGCA-TTTAATACTGATGAATATATGTGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATACA-TTTG-ACTA--T-GATACAAATATTATAATATT-A-TATACT-CTTCAAATTAAAATACATTAATGTATAACATTCATTTAGATATAT--GAAGAATATTGTAAA--GA-AATATT-GTTCATT-GATTTAAAT-GAA-ATAA--AAGATGAAAAAAAA
gi|3 : --TCAATTATAAAACTTTTGGAAA-AATCTTCTAACAC-AATAACAAATCT-GTAAGT-TCTTGAACAAAGAT------GTTC----AAATC-TGTG-CAGTTTCT-GCCA--TTACAAA-G--AAGATACTAAACAC-CTGATT--TTTGATTGCAAAAAGATGT--AAAAGATAACTGGAAAATT---ACTGGAGACTTTTTAAAATCAAACA-T-ACATTGG--AAACACA----T-----GTCA-TGCGTACC--TTTT-T-------ATGAAA-CACG-CACCACAAAAACTCGTAATCTTCTCATT--TCGT-ATATCGCTTTTCTTATT-TATAAAGT-GAAATGAAATTATGA--CTAGAAAATTGAATTAAAAT-CA-GG----ATTGTTA-------------TAAAAAATA-------TGTTAA-ACATAATT-TAT--TATACTG---TTATGAGA-ATAATAGAAAAT-AA-AACATTAGAATGATACCAAATCATTTTCATGATCTA-CGATTGTGTTT---ATAA--------TATGAT------------------TAATTATCAT----TAAT-CTGCCATA--TAAATGATATAATATATGTATTACATATGAATTTC--TTTGTGGATCATGTACATAAGTGATGTCGTATGTGAAGGGATTACTGTTCC-TCACATTTTGTTTACCT-GGGGCAAATGGACTCTTG----------GTGGTAGTGTGCCTTGCAGGTAAACTAAGGTAGCCTTACCTTTATAATCAT--------------------------TGTATTTTATGATATCAATACTTTAT-CG-AATACTT--GAATTACA-TTTATATTTAAAATATATTTTG-ACTAGAT-G-CAAAAATAT--TAGTATT-AT--TACT-CTTCAAACTAAAATACATTAATGTATAACATTCATTTAGATATAT--GTGGAATA-TGTTCATTGA-TTTA-T-G-TT-TT-G--TT-GAT-GAA-TGAAATAAA--GAAAAAAAAtaattta
gi|4 : cgagagcttagGA-AC-AATAATAAATCC-GAAAGTGTCTGGAATAGAAAG------GTTAC--AAAATTATGCAATAG-CTGT-GACA--TGAC-A--G--AAGATATAAAACACTTTAATC--TTTGATTGTAGAAA--TGTTAAAAAAATAT---GGGAATTAGCAC-GAAAAGTATGTAAGGT-AAACA-T-TCAGTGG--AAGCATA----GT----GTAA-ATGTTTACT-TTTT-TGTCGAAAATTAAAACACA-CA--AC-----TTCTTAATCTT-TTGTT--ATGTAACATTGCTTTTCTTA-TATACAAAAT-AAAATGAAATTAAGA-TTTAAAGAA--AAATCAGAAA-CA-GA---------CA-------------TGGAGATTAGAATGTACATTAA-AAACAAATCTGA--TATATTG---CTACAAAATCT-ATAAGAAAT-TA-AAAATCAGAt
gi|5 : TAT--TACACTG---TTATGAGATAT-ATAGAAAAA-TA-AACACTTGAATGATACCAAATCATTTTCATGATATCTCGAT-GTGTTTATAATAAGATGTTTTTATGATAATGAATGTGCTTTGCAATAATTGT-ATAATGTAAT-CTGGTATGGCTATATGAAAAAAAAT-TACA-TA--TATGCATTT-TTTTTGTGAAACATGTA--TAAGTGAGGTTCTATGTGAAGGGA-GACTGTTCCTTCACATTTTGTTTACCTGGGAGCGTATGGACTCTTGGA---TGCATGTGGCAGTGTGTCTTACAGGTAAACATAGGTA
gi|6 : ctTTCAAGGT-AAATA-T-TCAGTTG--ACACATA----TTTTAAATCAATTGGTTAC--TTTTCTGTCGAAAATCAAAACACA-CA--AC-----TTCTTAAGCTT-TTGTTA-TCTA-ATAATGTGTTTCTTA-TATACAAATTAAAAATGAAAATAAGA-TTT-GAAGAA-AAATCAGAAA-CA-GACATGGATATTAAAATGCATATACTTAAAAAATAAAG-ATATATTGATACAAAA
gi|7 : atggcacgatatgtaACAATTCAATGTGGA---CTTCAAA-GAACACAGAG-TA-TTGATCAATTTATATATCG----AAAATAAG--AAACAT---AATAGAAAAGCA---ACTTGCAGAA--T--TTAATTTCAGG-CTCCTGCATA-A-TTTATTGA-AC-AATAAGAAATCC-ATAAGTGTATGGAATTAAAAC------GTTAC--AAAATTATTCAATAA-CTGT-GACG--TGAC-A--G--AAGATATAAAACAC-TTCATG--TTGGATTGTAGAAA--GGT--TAAactataagaaattagaaatta
gi|8 : ---CTTCAAAAGAACACAGAG-----TAATCCATTTT---ATACGTTGACA-TAAC--AACC-TTGGAAAAGATAA-CA---ATCTGCGGAAATT--TAAATTTTAAA-CTTCTGCTA----TTTATTGA-AC-AACAATAAATCC-GTAAGTGT-TGGAATAAATAT------GTAACAAAAAATTAT-CAATAA-CTGT-GACAT-TGAC-G--G--AAGATATAAAGCAC-GAAATG--TTTG
gi|9 : aacaatttaaatgcgggATATCAG-ATCTTATGTG-TATTCTTATGAATTTTA-CT-ATATTTAAAATATA-TTTGCAATGA-T-G-CAAAAATATTATAGTATT-ATTATACT-CTTCAAACTAAAATACA-TAATGTATAACATTCATTTAGATATATTGGTGGAATATTGTTCATTGATTTTA-T-GTTT-TTGG--TTTGATAGAC-ATGAATAAGATAAAAAAAAAAcaactgtgaa
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): ACATGGAAATTGAAATTTACATTAAAAACAATCGGATATATTGCTACGAAATCTAAAGGAAAAATTAGATTAA