lowQualScore : 111111 11 1111 111 2222222 2222 999999999999999999999999999999999999999999999999999999999999999999999 111 11111 1111111 111 1 3333333333333 1111 1111 1 11 11111 222 111 333333333333333 1111 55555555
lowQualScore : 2 0 888888 9 8 8 5 11 8 5555 88 1 111 1111111 9 0000 3 666666666666666666666666666666666666666666666666666666666666666666666 0 000 5 5 44444 77 5 5 5 5 9999999 000 0 0 1111111111111 3333 4444 3 6 77 2 5 11111 5 77 666 99 5 5 5 888 444 111111111111111 0000 66 5 99999 22222222 99 77 5 5 4 4 55 2 4 4 55 55 3 777 4
lowQualScore : . . ...... . . . . .. . .... .. . ... ....... . .... . ..................................................................... . ... . . ..... .. . . . . ....... ... . . ............. .... .... . . .. . . ..... . .. ... .. . . . ... ... ............... .... .. . ..... ........ .. .. . . . . .. . . . .. .. . ... .
lowQualScore : 5 8 666666 6 0 0 4 00 0 3333 33 0 777 5555555 8 8888 5 333333333333333333333333333333333333333333333333333333333333333333333 4 000 7 7 33333 99 7 7 0 0 7777777 000 1 9 4444444444444 8888 2222 3 7 11 3 7 66666 7 99 000 44 7 7 7 888 000 111111111111111 6666 99 0 66666 44444444 44 99 0 0 0 0 55 8 0 0 00 00 6 888 4
consensus : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-A-CCCGA--C-ACCGAT--AAAATT-CCG---AGG---CGC-GCGCCCT----CTTTCGTCTTAATGG-----TAC----CT----------------TACA-AA--------------------T--CGA----CAAGTCAC---GA-ATG-ACGA-----AAAT--ACAAAAG-T-CGAACTAAC-ATTGGAC-GGG------TTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATATA-CAGTT-TACAT--C--TTACG-AA--ATTCT-NAA-TA-A-CG-AATG---CACATTTACGGACT-A-CAGATG----------TCA----AG--TT-A---A-GGATTAACATT--C---NTATATTTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTTCCATA
Reference ( gi|6 ) : CTCGGGTCGAACACATAAT--CGG-AACGTGACC-A-CCAGA--C-ACCGAT--ACAATT-CCG---AGG---CAC-GCGACCT----CTTTCGTCTTAAT-------TAC----CT----------------TACA-AA--------------------T--CGA----CAAGTCAC---GA-ATG-ATGA-----AAAT--ACAAAAG-T-CGAACTAAC-ATTGGAC-GGA------TTACCAAA---TAACAAGCACAGTAAC-------------TCG-AA-TCTACA----AA-GACATC-ATATT-CAGTT-TACAT--C--TTACG-AA--ATTCT-CAA-CA-A-CG-AATG---CACATTTACGGACT-G-CACACG----------CCA----AG--TT-A---A-GGATTAACATTGAC---ATATATTTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTCCCATA
gi|1 : CTCGGGTCGAAC-CATAAT--CG--AACGTGACC-AACCAGAGCC-AC-GAT--ACAAT--CCG---AGGTGGCACAGCGACCT----CTTTCGTCTTAAT-------TAC----CT----------------TACACAA--------------------T--CGA----CAAGTCACCTGAA-ATGAATGA-----AAAA--TCAAAAG-TCCGAACTAAC-ATTGGACTGGA------TTACCAAAAACTAACAAG-ACCGTAAC-------------TCG-AATTCTACA----AACGACATC-ATATT-CAGTTCTACATTCC--TTACC-AAACATTCT-CAA-CA-A-CGAAATGCATCATATTTACGGACTCG-CACACGTCTTGGAATTCCACGCCAG--TT-A---A-GGATTAACATTGACATAATATATTTACATTGAA--CAA-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TACGAATATTGAA-CGCCTTTGGCTTCCCATA
gi|2 : acccgtttggattttcgcataaagcaatacaagatacagtggtgaacatactcattatataataatattaccttaaatatttctttttttaaattttatacccgatctgttttaaaatgcgtttgtgtaaaggaaaattattcatgaatatatcttcttcaagaatcaaaacacactttgccgacagtcatttaaaaagaagaaaatttaacctgccataatgatgaaaataaaaaacatgaaattattttgatagcacctctagatttattggacgcaacaatttgtgtattatacgtaaacaaaacctgtcccgaatccgtgtgtattattgttatcaaccgctgttgtcgggaaatacctgtatcgaaaatgaaacacgcaccacttgggacgaatctaaCTCGG-TCGAACACATAAT--CG--AACGTAACCCA-TCCGA--CCACCGAT--AAAATT-CCG---AGC---CGC-GCGCCCTG---CTTTCGTC-TAATGGTGCA-TAC----CTTACAAAAATGATTAGATACA-AA--------------------T--CGA----CGAAGCAC---GA-ATG-ATAA-----AAATTAACAAAAGTT-CGAACTAAC-ATTGGAC-GGG------GTACCAAA---TAACAAGTAACGTAG--------------TCG-CC-TCTACA----AA-GACATCGATATCACAG---TACAT--C--TTACGAAA--ATTCA-CAA-TACA-CG-AATG---CACATTTACGACCT-A-CACATG----------TCA----AGGATT-A---AGGGATTAACATT--CT--ATATA-TTACATAGAA--C-ACAATA-CCGCATTTTAGT--AAAAGCAATCACTATGAT---A-CGGATA--TA-GAATGATGAA-A-CCTTTGGCTTTCCATA
gi|7 : aatccgtatggattttccaaaaaagcatccaggaaaaatggatgaagccatatatattccttgaatattcccttttttaaaaccattattcatcttttaaaatacgttttgtaaaggaaacttatcatgaaatatatcttcaaatcaaaccacactcgcacatctttgaaagaagaaacttttccgccataatggattaaaatgaaacaatggatattttgtacactcataaatttgatggccaacgtccagcaatttgtgattcgataaaatgaaaaatgtcccgatccgatgtgatttgttcacacctgttgcgggaaattacctgtatcaaaatgaacgcaaccacttgggacgaatccaCTCGGGTCGAACACATAAT--CAG-AACGTAACC-A-CCCCA--C-ACCCAT--TAAATT-CTG---AGG---CGC-GCGCCCT----CTTTCGTCTTAAT-------
gi|4 : ttatatcttcaaatcaaacacacttgcaacatctttgaagccataatgatacatgtaaaatgaaacatggaaaattttgtacattccaatacatagccaacgtcagacatttgtgattcgtaaaacacatgccccgaaacctgttagctgcggaaaacacatacattgattaaccctgttcacgtacaaaacgaacgaccatatttggatgaattcaCGGGTCGAACACATAATACTGGCAACGT-ACC-A-CCAGC--C-ACCGATTAAAAATTACCGCGTAGG-----C-GCGGCCTGTACCTTTTGTCTTAA
gi|3 : aaatcacctgtagtccaaactggaaacgctaccacttggggagcaaatttctacctcaTCGAACACATAAT--CAG-AACGTAACC-A-CTCGA--C-ACCTAT--AAAATC-C---------------GCGTTCT----CTTTCGTCATAATGGTGCATTAG----CT----------------TGCA-AA--------------------T-------------TCAC---GA-ATG-ATAATGTCGAACC--CCGGAAG-T-CGAAATAAC-ATTGGAC-GGG------TTACCAAA---TAAAGAGTACGATAACAGCGACCCAGATTTC--AA-TTTACATGGCAA-AA-ATC-ATG---CA-TT-TACTT--G--TTACG-CA----TCTACAAATA-A-CG-AATG---CACATTTACGGACT-A-TA-----------------------------------GATTTACA-------------------TTGAA--C-A-AGTA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CATCTGGCTTTCCATAgtggttaagtataccacatgcgagttttagttacaatgttagaattacaaattcgacaagtcacaagatgatgataatacaaaagtcgaactaactattggacggagacgggtaacgaaataacaagtacagtaacttgcatctacaaagacatcatatacagcttacatcttacggaattctaataacaaatgtatatttacggactaccgatgtcaagttaaggattaacatttttatatttacattgaacaaatactgcatttagtaaaagcaaatacataattacatggatagaatattgaaccctttggctttccata
gi|9 : aagaagaacattttaccgccataatgatgaaatgaaacatagaatatttgtacactccaatctatgacaaacgtcagacatttgtgattcgtaaacaaacactgtctcgatccatgtgatttgttacacctgttgcgggcaaaacacatgttaaatacccctgttacctgtattaaaacggaacgaaaacggaggagacgaatccaatggaaAT--AAAATT-GCG---AGG---CGC-ACACCCT----CTTTCGACTTAATGG-----TACTTAACT----------------TACA-AAATTGAATGTAGAATTGCAAAT--TGA----CAAATCAC---AA-AAG-AGGA-----AAAT--ACAAAAG-T-CGAACTAAC-ATTGAAC-AAG------TTACCAAA---TAACAAGTACAGTAGC-------------
gi|5 : AT-------TAG----CT----------------TACA-AA--------------------TGTTGAATTACAAATCAC---GA-ATT-ACGA-----AAAT--ACAAAAC-T-CGAACTAAC-ATTGGAC-GGG------TTACCAAA---TAAT---TACAACAAC-------------TCctaacaaacaacaatgaacaaatta
gi|4 : tgcT----------------TACA-AA--------------------TT-CGA----CAAGTCAC---AAGATG-ATGA-----TAAT--ACAAAAG-T-CGAACTAACTATTGGAC-GGAGACGGGTAACGAAA---TAACAAGTACAGTAAC-------------TTG-CA-TCTACA----AA-GACATC-ATATA-CAGCT-TACAT--C--TTACG-GA--ATTCT--AA-TA-A-CA-AATG---TATATTTACGGACT-A-CCGATG----------TCA----AG--TT-A---A-GGATTAACATT--T---TTATATTTACATTGAA--C-A-AATA-CTGCA-TTTAGT--AAAAGCAAATAC-ATAATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTTCCATActatcaaggcttaacaaccgacagtgaacaaatgatttaatacgggtaacggaaacccagttttcaatttacattgcaaaaataatgcatttacttgttacgcatctacaaagacaccatatacaatttacatcttacgaaattaaaataacgaatgcacatttacagactacagatgtcaagttatagaggattaacatatttctatttacactgaacaaataccacatttagtaaaagctaatacatgaatacattggatagaatattgaaacctttagctttccat
gi|16 : aaatcacctgtagtccaaactggaaacgctaccacttggggagcaaatttctacctcacgggtcgaacacataatactggcaacgtaccaccagccaccgattaaaaattaccgcgtaggcgcggcctgtaccttttgtcttaagtggttaagtataccacatgcgagttttagttacaatgttagaaAAGTTAC---GA-ATG-ACGA-----AGAT--ACAAAAG-T-CGAACTAAC-ATTGGAC-GG
gi|8 : AACTAA--ATTGAAC-GGT------TTTACAAA---TAACAAGTACAGTAAC-------------TCGCGA-TCTACA----AAGGACAGC-ATATA-CAGTT-TACAT--TCGTTACG-AA--ATTCA-AAA-TA-ACCA-AATG---CACATTTACGGACT-ACCACATG----------TCA----AG--TTGA---G-GGATTAACATT--T---ATATA-TTACATAGGAACC-A-AATACCCGCA-TTTAGTAAAAAAGCAAATAC-ATGATTACA-TGG--AATTA--AATATTGAA---CCTTTGGCTTg
gi|5 : CG-CA-TCTACA----AA-GACACC-ATATA-CAATT-TACAT--C--TTACG-AA--ATTA--AAA-TA-A-CG-AATG---CACATTTACAGACT-A-CAGATG----------TCA----AG--TT-ATAGA-GGATTAACAT--AT---TTCTATTTACACTGAA--C-A-AATA-CCACA-TTTAGT--AAAAGCTAATAC-ATGAATACATTGG--A--TA-GAATATTGAA-A-CCTTTAGCTTTCCATtttgccat
gi|12 : tgcattagcttacaaatgttgaattacaaatcacgaattacgaaaatacaaaactcgaactaacattggacgggttaccaaataattacaacaactcctatcaaggcttaacaaccgacagtgaacaaatgatttaatacgggtaacggaaacccagttttcaatttacattgcaaaaataatgcatttacttgttaATA-CAGCT-TACAT--C--TTACG-AA--ATTC--AAA-TA-A-AG-ATTG---CGGATTTACGGACT-A-CAGATG----------TCA----AG--TT-A---A-GGATTAACATT--T---TTATATTTAC
gi|10 : ATG---TTCATTTACGGACT-A-CAGAAA----------TCA----AG--TT-A---A-GGATTAACATTTTC---ATAT--TTACATTGAA--C-A-A-TA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CTTTTGGTTTTCCATA
gi|13 : -A-AATA-CCGCA-TTTAGT--AAACGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAACC-CCTTTGGCTTTCCATA
gi|14 : ATA-CCACA-TTTAGT--TAAAGCAAATAC-ATGATTACA-TGC--A--AA-GAACATGGAA-T-CCTTTGACTTTCCATAt
gi|15 : A-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTGCA-TGG--A--TA-GAACATTGAA-C-CCTTTGGCTTTCCATA
gi|17 : --A--TA-GAATATTGAA-C-CATTTGGCTTTCCATAa
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): CTTTTAAAAAGCGTTTTGTAAAGGAAAATGATCATGTATATATCTTCAAATCAAACGCACTTGCGACATCTTTGAAAGAAGAAAATTCTACAGCCATAATGATAAAATGAAACATGGAATATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 111 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1111111 11111 11111 111111 111111 2222222222222 1111 1 2222 222222222222222 1111111 2222222
lowQualScore : 99 33 4 6 6 99 6 77 55 000 000 5 000 5 1 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000 999999999 1 66 6666666 5 22222 22222 555555 5 5 4 222222 4 888 7777777777777 66 5 0000 0 5 4 4 66666 4 66 1111 4 4 4 4 777 777 4 4 111111111111111 55 3333333 4444444 4 66 4 4 3 3 55 3 3 44 44 3 666 555
lowQualScore : .. .. . . . .. . .. .. ... ... . ... . . . ................................................................................. ......... . .. ....... . ..... ..... ...... . . . ...... . ... ............. .. . .... . . . . ..... . .. .... . . . . ... ... . . ............... .. ....... ....... . .. . . . . .. . . .. .. . ... ...
lowQualScore : 22 33 2 7 7 22 7 99 99 000 000 7 000 7 7 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1 99 2222222 4 55555 55555 888888 0 0 4 888888 4 888 5555555555555 00 0 6666 0 0 4 4 88888 4 11 8888 4 4 4 4 000 000 0 0 888888888888888 55 1111111 8888888 0 11 0 0 3 3 00 6 6 66 66 3 333 888
consensus : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATTCTN--AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAACATT--C---NTATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
Reference ( family-3027 ) : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATTCTN--AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGATGTC----A----------AG--TT-A---A-GGATTAACATT--C---NTATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|1 : CTCGGGTCGAAC-CATAAT--CG--AACGTGACC-AACCAGAGCC-AC-GAT--ACAAT--CCG---AGGTGGCACAGCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------AC------AAT--CGA----CAAGTC--ACCTGAAATGAATGA--A-----AA-----AT------CAAAAG-TCCGAACTAAC-ATTG------GACTGGATTACCAAAAACTAACAAG-ACCGTAAC-------------TCG-AATTCTACA----AACGACATC-ATAT-TCAGTTCTACATTCC--TTACC-AAACATTCTC--AAC-A-A-CGAAATGCATCATATT---TACGGACTCG-CACACGTCTTGGAATTCCACGCCAG--TT-A---A-GGATTAACATTGACATAATATAT-TTACATTGAA--CAA-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TACGAATATTGAA-CGCCTTTGGCTTC---CCATA
gi|10 : acccgtttggattttcgcataaagcaatacaagatacagtggtgaacatactcattatataataatattaccttaaatatttctttttttaaattttatacccgatctgttttaaaatgcgtttgtgtaaaggaaaattattcatgaatatatcttcttcaagaatcaaaacacactttgccgacagtcatttaaaaagaagaaaatttaacctgccataatgatgaaaataaaaaacatgaaattattttgatagcacctctagatttattggacgcaacaatttgtgtattatacgtaaacaaaacctgtcccgaatccgtgtgtattattgttatcaaccgctgttgtcgggaaatacctgtatcgaaaatgaaacacgcaccacttgggacgaatctaaATG---TTCATT---TACGGACT-A-CAGAAATC----A----------AG--TT-A---A-GGATTAACATT--T---TCATAT-TTACATTGAA--C-A-A-TA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CTTTTGGTTTT---CCATA
gi|12 : AT-ACAGCT-TACAT--C--TTACG-AA--ATTC-A--AAT-A-A-AG-ATTG---CGGATT---TACGGACT-A-CAGATGTC----A----------AG--TT-A---A-GGATTAACATT--T---TTATAT-TTAC
gi|13 : -A-AATA-CCGCA-TTTAGT--AAACGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAACC-CCTTTGGCTTT---CCATA
gi|14 : ATA-CCACA-TTTAGT--TAAAGCAAATAC-ATGATTACA-TGC--A--AA-GAACATGGAA-T-CCTTTGACTTT---CCATAt
gi|15 : A-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTGCA-TGG--A--TA-GAACATTGAA-C-CCTTTGGCTTT---CCATA
gi|16 : AAGTT--AC-------GAATGACGA-----AG-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGa
gi|17 : --A--TA-GAATATTGAA-C-CATTTGGCTTT---CCATA
gi|2 : CTCGG-TCGAACACATAAT--CG--AACGTAACCCATCC-GA--CCACCGAT--AAAATT-CCG---AGCCG---C-GCGCCC---TGCTTTCGTC-TAA-TGGTGCA---TAC-----C---------------TTACAAAAATGATTAGATAC--------------------A-------AAT--CGA----CGAAGC--AC-------GAATGATAA-----AA-----ATTAA---CAAAAGTTC-GAACTAAC-ATTG------GAC-GGGGTACCAAA---TAACAAGTAACGTAG--------------TCG-CC-TCTACA----AA-GACATCGATATCACAG---TACAT--C--TTACGAAA--ATTCAC--AAT-ACA-CG-AATG---CACATT---TACGACCT-A-CACATGTC----A----------AGGATT-A---AGGGATTAACATT--C----TATATATTACATAGAA--C-ACAATA-CCGCATTTTAGT--AAAAGCAATCACTATGAT---A-CGGATA--TA-GAATGATGAA-A-CCTTTGGCTTT---CCATAg
gi|3 : aatccgtatggattttccaaaaaagcatccaggaaaaatggatgaagccatatatattccttgaatattcccttttttaaaaccattattcatcttttaaaatacgttttgtaaaggaaacttatcatgaaatatatcttcaaatcaaaccacactcgcacatctttgaaagaagaaacttttccgccataatggattaaaatgaaacaatggatattttgtacactcataaatttgatggccaacgtccagcaatttgtgattcgataaaatgaaaaatgtcccgatccgatgtgatttgttcacacctgttgcgggaaattacctgtatcaaaatgaacgcaaccacttgggacgaatccaTCGAACACATAAT--CAG-AACGTAACC-ACTC-GA--C-ACCTAT--AAAATC-C---------------GCGTTC---T-CTTTCGTCATAA-TGG-------TGCATTAGC---------------TT----------------GC--------------------A-------AAT-------------TC--AC-------GAATGATAATGTCGAA-----CC--C---CGGAAG-TC-GAAATAAC-ATTG------GAC-GGGTTACCAAA---TAAAGAGTACGATAACAGCGACCCAGATTTC--AA-TTTACATGGCAA-AA-ATC-ATGC-A---TT-TACTT--G--TTACG-CA----TCTACAAAT-A-A-CG-AATG---CACATT---TACGGACT-A-TAGAT----------------------TT-------------ACAT--------------------TGAA--C-A-AGTA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CATCTGGCTTT---CCATA
gi|4 : aagaagaacattttaccgccataatgatgaaatgaaacatagaatatttgtacactccaatctatgacaaacgtcagacatttgtgattcgtaaacaaacactgtctcgatccatgtgatttgttacacctgttgcgggcaaaacacatgttaaatacccctgttacctgtattaaaacggaacgaaaacggaggagacgaatccaatggaaCGGGTCGAACACATAATACTGGCAACGT-ACC-ACCA-GC--C-ACCGATTAAAAATTACCGCGTAGGCG---C-G-GCCTGTAC-CTTTTGTCTTAAGTGGTTAAGTATAC-----CACATGCGAGTTTTAGTT----------------AC--------------------AATGTTAGAAT--T-A----CAAATTCGAC-------AAGTCACAA-----GATGATGAT--AATACAAAAG-TC-GAACTAACTATTGGACGGAGAC-GGGTAACGAAA---TAACAAGTACAGTAAC-------------TTG-CA-TCTACA----AA-GACATC-ATAT-ACAGCT-TACAT--C--TTACG-GA--ATTCT---AAT-A-A-CA-AATG---TATATT---TACGGACT-A-CCGATGTC----A----------AG--TT-A---A-GGATTAACATT--T---TTATAT-TTACATTGAA--C-A-AATA-CTGCA-TTTAGT--AAAAGCAAATAC-ATAATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|5 : aaatcacctgtagtccaaactggaaacgctaccacttggggagcaaatttctacctca-------TAG-----C---------------TT----------------AC--------------------A-------AATGTTGAATTACAAATC--AC-------GAATTACGA-----AA-----AT--A---CAAAAC-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAAT---TACAACAAC-------------TCC-TA-TC--------AA-GGC-------------TT-AACAA--C-----CG-A--------C--AGTGA-A-CA-AATG------ATTTAATACGGGTA-A-CGGAAACC----C----------AG--TT----------------TT--C---A---AT-TTACATTGCA--A-A-AATA-ATGCA-TTTA
gi|5 : tgcatCG-CA-TCTACA----AA-GACACC-ATAT-ACAATT-TACAT--C--TTACG-AA--ATTA-A--AAT-A-A-CG-AATG---CACATT---TACAGACT-A-CAGATGTC----A----------AG--TT-ATAGA-GGATTAACATA--T---TTCTAT-TTACACTGAA--C-A-AATA-CCACA-TTTAGT--AAAAGCTAATAC-ATGAATACATTGG--A--TA-GAATATTGAA-A-CCTTTAGCTTT---CCATcttgttacgcatctacaaagacaccatatacaatttacatcttacgaaattaaaataacgaatgcacatttacagactacagatgtcaagttatagaggattaacatatttctatttacactgaacaaataccacatttagtaaaagctaatacatgaatacattggatagaatattgaaacctttagctttccat
gi|6 : tgcattagcttacaaatgttgaattacaaatcacgaattacgaaaatacaaaactcgaactaacattggacgggttaccaaataattacaacaactcctatcaaggcttaacaaccgacagtgaacaaatgatttaatacgggtaacggaaacccagttttcaatttacattgcaaaaataatgcatttacttgttaCTCGGGTCGAACACATAAT--CGG-AACGTGACC-ACCA-GA--C-ACCGAT--ACAATT-CCG---AGGCA---C-GCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGATGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGATTACCAAA---TAACAAGCACAGTAAC-------------TCG-AA-TCTACA----AA-GACATC-ATAT-TCAGTT-TACAT--C--TTACG-AA--ATTCTC--AAC-A-A-CG-AATG---CACATT---TACGGACT-G-CACACGCC----A----------AG--TT-A---A-GGATTAACATTGAC---ATATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTC---CCATA
gi|7 : CTCGGGTCGAACACATAAT--CAG-AACGTAACC-ACCC-CA--C-ACCCAT--TAAATT-CTG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-T
gi|8 : ttatatcttcaaatcaaacacacttgcaacatctttgaagccataatgatacatgtaaaatgaaacatggaaaattttgtacattccaatacatagccaacgtcagacatttgtgattcgtaaaacacatgccccgaaacctgttagctgcggaaaacacatacattgattaaccctgttcacgtacaaaacgaacgaccatatttggatgaattcaAACTAA--ATTG------AAC-GGTTTTACAAA---TAACAAGTACAGTAAC-------------TCGCGA-TCTACA----AAGGACAGC-ATAT-ACAGTT-TACAT--TCGTTACG-AA--ATTCAA--AAT-A-ACCA-AATG---CACATT---TACGGACT-ACCACATGTC----A----------AG--TTGA---G-GGATTAACATT--T---ATATA--TTACATAGGAACC-A-AATACCCGCA-TTTAGTAAAAAAGCAAATAC-ATGATTACA-TGG--AATTA--AATATTGAA---CCTTTGGCTTTTTGCCAT
gi|9 : AT--AAAATT-GCG---AGGCG---C-ACACCC---T-CTTTCGACTTAA-TGG-------TACTTAA-C---------------TT----------------ACAAAATTGAATGTAGAATTGCA-------AAT--TGA----CAAATC--AC-------AAAAGAGGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------AAC-AAGTTACCAAA---TAACAAGTACAGTAGC-------------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTTTAAAAAGCGTTTTGTAAAGGAAAATGATCATGTATATATCTTCAAATCAAACGCACTTGCGACATCTTTGAAAGAAGAAAATTCTACAGCCATAATGATAAAATGAAACATGGAATATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 111 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1111111 11111 11111 111111 111111 2222222222222 1111 1 2222 222222222222222 1111111 2222222
lowQualScore : 99 33 4 6 6 99 6 77 55 000 000 5 000 5 1 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000 999999999 1 66 6666666 5 22222 22222 555555 5 5 4 222222 4 888 7777777777777 66 5 0000 0 5 4 4 66666 4 66 1111 4 4 4 4 777 777 4 4 5 5 111111111111111 55 0000000 4444444 4 66 4 4 3 3 55 3 3 44 44 3 666 555
lowQualScore : .. .. . . . .. . .. .. ... ... . ... . . . ................................................................................. ......... . .. ....... . ..... ..... ...... . . . ...... . ... ............. .. . .... . . . . ..... . .. .... . . . . ... ... . . . . ............... .. ....... ....... . .. . . . . .. . . .. .. . ... ...
lowQualScore : 22 33 2 7 7 22 7 99 99 000 000 7 000 7 7 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1 99 2222222 4 55555 55555 888888 0 0 4 888888 4 888 5555555555555 00 0 6666 0 0 4 4 88888 4 11 8888 4 4 4 4 000 000 0 0 0 5 888888888888888 55 6666666 8888888 0 11 0 0 3 3 00 6 6 66 66 3 333 888
consensus : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATTCTN--AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAACATT--C---NTATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
Reference ( family-3027 ) : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATTCTN--AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAACATT--C---NTATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|1 : CTCGGGTCGAAC-CATAAT--CG--AACGTGACC-AACCAGAGCC-AC-GAT--ACAAT--CCG---AGGTGGCACAGCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------AC------AAT--CGA----CAAGTC--ACCTGAAATGAATGA--A-----AA-----AT------CAAAAG-TCCGAACTAAC-ATTG------GACTGGATTACCAAAAACTAACAAG-ACCGTAAC-------------TCG-AATTCTACA----AACGACATC-ATAT-TCAGTTCTACATTCC--TTACC-AAACATTCTC--AAC-A-A-CGAAATGCATCATATT---TACGGACTCG-CACACGTCTTGGAATTCCACGCCAG--TT-A---A-GGATTAACATTGACATAATATAT-TTACATTGAA--CAA-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TACGAATATTGAA-CGCCTTTGGCTTC---CCATA
gi|10 : acccgtttggattttcgcataaagcaatacaagatacagtggtgaacatactcattatataataatattaccttaaatatttctttttttaaattttatacccgatctgttttaaaatgcgtttgtgtaaaggaaaattattcatgaatatatcttcttcaagaatcaaaacacactttgccgacagtcatttaaaaagaagaaaatttaacctgccataatgatgaaaataaaaaacatgaaattattttgatagcacctctagatttattggacgcaacaatttgtgtattatacgtaaacaaaacctgtcccgaatccgtgtgtattattgttatcaaccgctgttgtcgggaaatacctgtatcgaaaatgaaacacgcaccacttgggacgaatctaaATG---TTCATT---TACGGACT-A-CAGAAATC----A----------AG--TT-A---A-GGATTAACATT--T---TCATAT-TTACATTGAA--C-A-A-TA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CTTTTGGTTTT---CCATA
gi|12 : AT-ACAGCT-TACAT--C--TTACG-AA--ATTC-A--AAT-A-A-AG-ATTG---CGGATT---TACGGACT-A-CAGATGTC----A----------AG--TT-A---A-GGATTAACATT--T---TTATAT-TTAC
gi|13 : -A-AATA-CCGCA-TTTAGT--AAACGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAACC-CCTTTGGCTTT---CCATA
gi|14 : ATA-CCACA-TTTAGT--TAAAGCAAATAC-ATGATTACA-TGC--A--AA-GAACATGGAA-T-CCTTTGACTTT---CCATAt
gi|15 : A-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTGCA-TGG--A--TA-GAACATTGAA-C-CCTTTGGCTTT---CCATA
gi|16 : AAGTT--AC-------GAATGACGA-----AG-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGa
gi|17 : --A--TA-GAATATTGAA-C-CATTTGGCTTT---CCATA
gi|2 : CTCGG-TCGAACACATAAT--CG--AACGTAACCCATCC-GA--CCACCGAT--AAAATT-CCG---AGCCG---C-GCGCCC---TGCTTTCGTC-TAA-TGGTGCA---TAC-----C---------------TTACAAAAATGATTAGATAC--------------------A-------AAT--CGA----CGAAGC--AC-------GAATGATAA-----AA-----ATTAA---CAAAAGTTC-GAACTAAC-ATTG------GAC-GGGGTACCAAA---TAACAAGTAACGTAG--------------TCG-CC-TCTACA----AA-GACATCGATATCACAG---TACAT--C--TTACGAAA--ATTCAC--AAT-ACA-CG-AATG---CACATT---TACGACCT-A-CACATGTC----A----------AGGATT-A---AGGGATTAACATT--C----TATATATTACATAGAA--C-ACAATA-CCGCATTTTAGT--AAAAGCAATCACTATGAT---A-CGGATA--TA-GAATGATGAA-A-CCTTTGGCTTT---CCATAg
gi|3 : aatccgtatggattttccaaaaaagcatccaggaaaaatggatgaagccatatatattccttgaatattcccttttttaaaaccattattcatcttttaaaatacgttttgtaaaggaaacttatcatgaaatatatcttcaaatcaaaccacactcgcacatctttgaaagaagaaacttttccgccataatggattaaaatgaaacaatggatattttgtacactcataaatttgatggccaacgtccagcaatttgtgattcgataaaatgaaaaatgtcccgatccgatgtgatttgttcacacctgttgcgggaaattacctgtatcaaaatgaacgcaaccacttgggacgaatccaTCGAACACATAAT--CAG-AACGTAACC-ACTC-GA--C-ACCTAT--AAAATC-C---------------GCGTTC---T-CTTTCGTCATAA-TGG-------TGCATTAGC---------------TT----------------GC--------------------A-------AAT-------------TC--AC-------GAATGATAATGTCGAA-----CC--C---CGGAAG-TC-GAAATAAC-ATTG------GAC-GGGTTACCAAA---TAAAGAGTACGATAACAGCGACCCAGATTTC--AA-TTTACATGGCAA-AA-ATC-ATGC-A---TT-TACTT--G--TTACG-CA----TCTACAAAT-A-A-CG-AATG---CACATT---TACGGACT-A-TA-----------------------------------GATTTACAT--------------------TGAA--C-A-AGTA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CATCTGGCTTT---CCATA
gi|4 : aagaagaacattttaccgccataatgatgaaatgaaacatagaatatttgtacactccaatctatgacaaacgtcagacatttgtgattcgtaaacaaacactgtctcgatccatgtgatttgttacacctgttgcgggcaaaacacatgttaaatacccctgttacctgtattaaaacggaacgaaaacggaggagacgaatccaatggaaCGGGTCGAACACATAATACTGGCAACGT-ACC-ACCA-GC--C-ACCGATTAAAAATTACCGCGTAGGCG---C-G-GCCTGTAC-CTTTTGTCTTAAGTGGTTAAGTATAC-----CACATGCGAGTTTTAGTT----------------AC--------------------AATGTTAGAAT--T-A----CAAATTCGAC-------AAGTCACAA-----GATGATGAT--AATACAAAAG-TC-GAACTAACTATTGGACGGAGAC-GGGTAACGAAA---TAACAAGTACAGTAAC-------------TTG-CA-TCTACA----AA-GACATC-ATAT-ACAGCT-TACAT--C--TTACG-GA--ATTCT---AAT-A-A-CA-AATG---TATATT---TACGGACT-A-CCGATGTC----A----------AG--TT-A---A-GGATTAACATT--T---TTATAT-TTACATTGAA--C-A-AATA-CTGCA-TTTAGT--AAAAGCAAATAC-ATAATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|5 : aaatcacctgtagtccaaactggaaacgctaccacttggggagcaaatttctacctca-------TAG-----C---------------TT----------------AC--------------------A-------AATGTTGAATTACAAATC--AC-------GAATTACGA-----AA-----AT--A---CAAAAC-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAAT---TACAACAAC-------------TCC-TA-TC--------AA-GGC-------------TT-AACAA--C-----CG-A--------C--AGTGA-A-CA-AATG------ATTTAATACGGGTA-A-CGGAAACC----C----------AG--TT----------------TT--C---A---AT-TTACATTGCA--A-A-AATA-ATGCA-TTTA
gi|5 : tgcatCG-CA-TCTACA----AA-GACACC-ATAT-ACAATT-TACAT--C--TTACG-AA--ATTA-A--AAT-A-A-CG-AATG---CACATT---TACAGACT-A-CAGATGTC----A----------AG--TT-ATAGA-GGATTAACATA--T---TTCTAT-TTACACTGAA--C-A-AATA-CCACA-TTTAGT--AAAAGCTAATAC-ATGAATACATTGG--A--TA-GAATATTGAA-A-CCTTTAGCTTT---CCATcttgttacgcatctacaaagacaccatatacaatttacatcttacgaaattaaaataacgaatgcacatttacagactacagatgtcaagttatagaggattaacatatttctatttacactgaacaaataccacatttagtaaaagctaatacatgaatacattggatagaatattgaaacctttagctttccat
gi|6 : tgcattagcttacaaatgttgaattacaaatcacgaattacgaaaatacaaaactcgaactaacattggacgggttaccaaataattacaacaactcctatcaaggcttaacaaccgacagtgaacaaatgatttaatacgggtaacggaaacccagttttcaatttacattgcaaaaataatgcatttacttgttaCTCGGGTCGAACACATAAT--CGG-AACGTGACC-ACCA-GA--C-ACCGAT--ACAATT-CCG---AGGCA---C-GCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGATGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGATTACCAAA---TAACAAGCACAGTAAC-------------TCG-AA-TCTACA----AA-GACATC-ATAT-TCAGTT-TACAT--C--TTACG-AA--ATTCTC--AAC-A-A-CG-AATG---CACATT---TACGGACT-G-CACACGCC----A----------AG--TT-A---A-GGATTAACATTGAC---ATATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTC---CCATA
gi|7 : CTCGGGTCGAACACATAAT--CAG-AACGTAACC-ACCC-CA--C-ACCCAT--TAAATT-CTG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-T
gi|8 : ttatatcttcaaatcaaacacacttgcaacatctttgaagccataatgatacatgtaaaatgaaacatggaaaattttgtacattccaatacatagccaacgtcagacatttgtgattcgtaaaacacatgccccgaaacctgttagctgcggaaaacacatacattgattaaccctgttcacgtacaaaacgaacgaccatatttggatgaattcaAACTAA--ATTG------AAC-GGTTTTACAAA---TAACAAGTACAGTAAC-------------TCGCGA-TCTACA----AAGGACAGC-ATAT-ACAGTT-TACAT--TCGTTACG-AA--ATTCAA--AAT-A-ACCA-AATG---CACATT---TACGGACT-ACCACATGTC----A----------AG--TTGA---G-GGATTAACATT--T---ATATA--TTACATAGGAACC-A-AATACCCGCA-TTTAGTAAAAAAGCAAATAC-ATGATTACA-TGG--AATTA--AATATTGAA---CCTTTGGCTTTTTGCCAT
gi|9 : AT--AAAATT-GCG---AGGCG---C-ACACCC---T-CTTTCGACTTAA-TGG-------TACTTAA-C---------------TT----------------ACAAAATTGAATGTAGAATTGCA-------AAT--TGA----CAAATC--AC-------AAAAGAGGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------AAC-AAGTTACCAAA---TAACAAGTACAGTAGC-------------
blockSeqs : AC GC A C . . C TA TA CGT . . GTA G A G GGTTAAGTATACCACATGCGAGTTTTAGTTACAATGTTAG GTTGAATTA G CG . C TGTCG TGATG AATA T . T GACGGA . . AGCGACCCAGATT CG . TGGC G G C . TCG A . TACA G C C . . TAA . C G A A GA ATAGA GACA A AC . C C T AA T T AT AT . CC TTG
blockSeqs : . G A . . . . . T . . . . . T . GGTACTTAACTTACAAAATTGAATGTAGAATTGCA CGA A . . T . . TAA . . . . . . . C . . . . . . C . . AC . . . . . . . . G T A . AAG TT . . . . . . . . . . . . C .
blockSeqs : . G G . . . . . C . . . . . T . GGTGCATACCTTACAAAAATGATTAGATACA CGA A . . T . . A . . . . . . . A . . . . . . C . . TC . . . . . . . . C T A . GAG TT . . . . . . . . . . . . T .
blockSeqs : . G A . . . . . T . . . . . T . GGTGCATTAGCTTGCA TGA A . . C . . C . . . . . . . C . . . . . . G . . AA . . . . . . . . G T A . AA TT . . . . . . . . . . . . C .
blockSeqs : . . . . . . . . T . . . . . T . TACCTTACA TA G . . C . . A . . . . . . . T . . . . . . C . . A . . . . . . . . G A C . AA CA . . . . . . . . . . . . C .
blockSeqs : . T . . . . . . . . A . . T . . A . . . . . . . C . . . . . . C . . T . . . . . . . . G T A . AA TT . . . . . . . . . . . . A .
blockSeqs : . . . G . . A . . . . . . . A . . . . . . C . . C . . . . . . . . C C A . AA TA . . . . . . . . . . . . C .
blockSeqs : . . . . . C . . A . . . . . . . . C T A . . C . . . . . . . . . . . . C .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . . . . . . . C .
blockSeqs : . . . . . . .
blockSeqCons : G* ** T* *** ******* A***** *** C**** ** A*** *** A************** TT***** C**
originalCons : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATTCTN--AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAACATT--C---NTATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
finalCons : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----ATA-----CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACATC----TTACG-AA--ATTCA---AAT-A-A-CG-AATG---CACATT---TACGGACT-A-CAGACGTCA--------------AG--TT-A---A-GGATTAACATTTT-----TATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAAC--CCTTTGGCTTT---CCATA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTTTAAAAAGCGTTTTGTAAAGGAAAATGATCATGTATATATCTTCAAATCAAACGCACTTGCGACATCTTTGAAAGAAGAAAATTCTACAGCCATAATGATAAAATGAAACATGGAATATT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 111 111 111 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1111111 11111 11111 111111 111111 2222222222222 1111 1 111 222222222222222 111111111
lowQualScore : 99 33 4 6 6 99 6 77 55 000 000 5 000 5 1 5 000000000000000000000000000000000000000000000000000000000000000000000000000000000 999999999 1 66 6666666 5 22222 22222 555555 5 5 4 222222 4 888 7777777777777 66 5 0000 0 5 4 4 66666 4 66 4 777 4 4 4 777 4 4 8 111111111111111 55 4 88888 777 000000000 0 4 66 4 4 3 3 55 3 3 44 44 3 666 555
lowQualScore : .. .. . . . .. . .. .. ... ... . ... . . . ................................................................................. ......... . .. ....... . ..... ..... ...... . . . ...... . ... ............. .. . .... . . . . ..... . .. . ... . . . ... . . . ............... .. . ..... ... ......... . . .. . . . . .. . . .. .. . ... ...
lowQualScore : 22 33 2 7 7 22 7 99 99 000 000 7 000 7 7 7 333333333333333333333333333333333333333333333333333333333333333333333333333333333 111111111 1 99 2222222 4 55555 55555 888888 0 0 4 888888 4 888 5555555555555 00 0 6666 0 0 4 4 88888 4 11 4 000 4 4 4 000 0 0 0 888888888888888 55 0 33333 000 666666666 8 0 11 0 0 3 3 00 6 6 66 66 3 333 888
consensus : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATT-C-A-AATA-A-CG-AATG---CACATTTACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAAC---ATT--T---T--TATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
Reference ( family-3027 ) : CTCGGGTCGAACACATAAT--CGG-AACGTAACC-ACCC-GA--C-ACCGAT--AAAATT-CCG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-TGG-------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGACGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAACAAGTACAGTAAC-------------TCG-NA-TCTACA----AA-GACATC-ATAT-ACAGTT-TACAT--C--TTACG-AA--ATT-C-A-AATA-A-CG-AATG---CACATTTACGGACT-A-CAGACGTC----A----------AG--TT-A---A-GGATTAAC---ATT--T---T--TATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|1 : CTCGGGTCGAAC-CATAAT--CG--AACGTGACC-AACCAGAGCC-AC-GAT--ACAAT--CCG---AGGTGGCACAGCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------AC------AAT--CGA----CAAGTC--ACCTGAAATGAATGA--A-----AA-----AT------CAAAAG-TCCGAACTAAC-ATTG------GACTGGATTACCAAAAACTAACAAG-ACCGTAAC-------------TCG-AATTCTACA----AACGACATC-ATAT-TCAGTTCTACATTCC--TTACC-AAACATT-CTC-AACA-A-CGAAATGCATCATATTTACGGACTCG-CACACGTCTTGGAATTCCACGCCAG--TT-A---A-GGATTAAC---ATT--GACATAATATAT-TTACATTGAA--CAA-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TACGAATATTGAA-CGCCTTTGGCTTC---CCATA
gi|10 : acccgtttggattttcgcataaagcaatacaagatacagtggtgaacatactcattatataataatattaccttaaatatttctttttttaaattttatacccgatctgttttaaaatgcgtttgtgtaaaggaaaattattcatgaatatatcttcttcaagaatcaaaacacactttgccgacagtcatttaaaaagaagaaaatttaacctgccataatgatgaaaataaaaaacatgaaattattttgatagcacctctagatttattggacgcaacaatttgtgtattatacgtaaacaaaacctgtcccgaatccgtgtgtattattgttatcaaccgctgttgtcgggaaatacctgtatcgaaaatgaaacacgcaccacttgggacgaatctaaATG---TTCATTTACGGACT-A-CAGAAATC----A----------AG--TT-A---A-GGATTAAC---ATT--T---T--CATAT-TTACATTGAA--C-A-A-TA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CTTTTGGTTTT---CCATA
gi|12 : AT-ACAGCT-TACAT--C--TTACG-AA--ATT-C-A-AATA-A-AG-ATTG---CGGATTTACGGACT-A-CAGATGTC----A----------AG--TT-A---A-GGATTAAC---ATT--T---T--TATAT-TTAC
gi|13 : -A-AATA-CCGCA-TTTAGT--AAACGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAACC-CCTTTGGCTTT---CCATA
gi|14 : ATA-CCACA-TTTAGT--TAAAGCAAATAC-ATGATTACA-TGC--A--AA-GAACATGGAA-T-CCTTTGACTTT---CCATAt
gi|15 : A-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTGCA-TGG--A--TA-GAACATTGAA-C-CCTTTGGCTTT---CCATA
gi|16 : AAGTT--AC-------GAATGACGA-----AG-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGGa
gi|17 : --A--TA-GAATATTGAA-C-CATTTGGCTTT---CCATA
gi|2 : CTCGG-TCGAACACATAAT--CG--AACGTAACCCATCC-GA--CCACCGAT--AAAATT-CCG---AGCCG---C-GCGCCC---TGCTTTCGTC-TAA-TGGTGCA---TAC-----C---------------TTACAAAAATGATTAGATAC--------------------A-------AAT--CGA----CGAAGC--AC-------GAATGATAA-----AA-----ATTAA---CAAAAGTTC-GAACTAAC-ATTG------GAC-GGGGTACCAAA---TAACAAGTAACGTAG--------------TCG-CC-TCTACA----AA-GACATCGATATCACAG---TACAT--C--TTACGAAA--ATT-C-ACAATACA-CG-AATG---CACATTTACGACCT-A-CACATGTC----A----------AGGATT-A---AGGGATTAAC---A-T--T---C--TATATATTACATAGAA--C-ACAATA-CCGCATTTTAGT--AAAAGCAATCACTATGAT---A-CGGATA--TA-GAATGATGAA-A-CCTTTGGCTTT---CCATAg
gi|3 : aatccgtatggattttccaaaaaagcatccaggaaaaatggatgaagccatatatattccttgaatattcccttttttaaaaccattattcatcttttaaaatacgttttgtaaaggaaacttatcatgaaatatatcttcaaatcaaaccacactcgcacatctttgaaagaagaaacttttccgccataatggattaaaatgaaacaatggatattttgtacactcataaatttgatggccaacgtccagcaatttgtgattcgataaaatgaaaaatgtcccgatccgatgtgatttgttcacacctgttgcgggaaattacctgtatcaaaatgaacgcaaccacttgggacgaatccaTCGAACACATAAT--CAG-AACGTAACC-ACTC-GA--C-ACCTAT--AAAATC-C---------------GCGTTC---T-CTTTCGTCATAA-TGG-------TGCATTAGC---------------TT----------------GC--------------------A-------AAT-------------TC--AC-------GAATGATAATGTCGAA-----CC--C---CGGAAG-TC-GAAATAAC-ATTG------GAC-GGGTTACCAAA---TAAAGAGTACGATAACAGCGACCCAGATTTC--AA-TTTACATGGCAA-AA-ATC-ATGC-A---TT-TACTT--G--TTACG-CA--TCTAC-A-AATA-A-CG-AATG---CACATTTACGGACT-A-TAGA------------------------------------------------T---T--TA-------CATTGAA--C-A-AGTA-CCGCA-TTTAGT--AAAAGCAAATAC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CATCTGGCTTT---CCATA
gi|4 : aagaagaacattttaccgccataatgatgaaatgaaacatagaatatttgtacactccaatctatgacaaacgtcagacatttgtgattcgtaaacaaacactgtctcgatccatgtgatttgttacacctgttgcgggcaaaacacatgttaaatacccctgttacctgtattaaaacggaacgaaaacggaggagacgaatccaatggaaCGGGTCGAACACATAATACTGGCAACGT-ACC-ACCA-GC--C-ACCGATTAAAAATTACCGCGTAGGCG---C-G-GCCTGTAC-CTTTTGTCTTAAGTGGTTAAGTATAC-----CACATGCGAGTTTTAGTT----------------AC--------------------AATGTTAGAAT--T-A----CAAATTCGAC-------AAGTCACAA-----GATGATGAT--AATACAAAAG-TC-GAACTAACTATTGGACGGAGAC-GGGTAACGAAA---TAACAAGTACAGTAAC-------------TTG-CA-TCTACA----AA-GACATC-ATAT-ACAGCT-TACAT--C--TTACG-GA--ATT-C-T-AATA-A-CA-AATG---TATATTTACGGACT-A-CCGATGTC----A----------AG--TT-A---A-GGATTAAC---ATT--T---T--TATAT-TTACATTGAA--C-A-AATA-CTGCA-TTTAGT--AAAAGCAAATAC-ATAATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTT---CCATA
gi|5 : aaatcacctgtagtccaaactggaaacgctaccacttggggagcaaatttctacctca-------TAG-----C---------------TT----------------AC--------------------A-------AATGTTGAATTACAAATC--AC-------GAATTACGA-----AA-----AT--A---CAAAAC-TC-GAACTAAC-ATTG------GAC-GGGTTACCAAA---TAAT---TACAACAAC-------------TCC-TA-TC--------AA-GGC-------------TT-AACAA--C-----CG-A-------C-A-GTGA-A-CA-AATG------ATTTA---A-T-A-CGG---------------------G--TA-A---C-GGA--AACCCAGTT--T---T--CA-AT-TTACATTGCA--A-A-AATA-ATGCA-TTTA
gi|5 : tgcatCG-CA-TCTACA----AA-GACACC-ATAT-ACAATT-TACAT--C--TTACG-AA--ATT-A-A-AATA-A-CG-AATG---CACATTTACAGACT-A-CAGATGTC----A----------AG--TT-ATAGA-GGATTAAC---ATA--T---T--TCTAT-TTACACTGAA--C-A-AATA-CCACA-TTTAGT--AAAAGCTAATAC-ATGAATACATTGG--A--TA-GAATATTGAA-A-CCTTTAGCTTT---CCATcttgttacgcatctacaaagacaccatatacaatttacatcttacgaaattaaaataacgaatgcacatttacagactacagatgtcaagttatagaggattaacatatttctatttacactgaacaaataccacatttagtaaaagctaatacatgaatacattggatagaatattgaaacctttagctttccat
gi|6 : tgcattagcttacaaatgttgaattacaaatcacgaattacgaaaatacaaaactcgaactaacattggacgggttaccaaataattacaacaactcctatcaaggcttaacaaccgacagtgaacaaatgatttaatacgggtaacggaaacccagttttcaatttacattgcaaaaataatgcatttacttgttaCTCGGGTCGAACACATAAT--CGG-AACGTGACC-ACCA-GA--C-ACCGAT--ACAATT-CCG---AGGCA---C-GCGACC---T-CTTTCGTCTTAA-T---------TAC-----C---------------TT----------------AC--------------------A-------AAT--CGA----CAAGTC--AC-------GAATGATGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------GAC-GGATTACCAAA---TAACAAGCACAGTAAC-------------TCG-AA-TCTACA----AA-GACATC-ATAT-TCAGTT-TACAT--C--TTACG-AA--ATT-CTC-AACA-A-CG-AATG---CACATTTACGGACT-G-CACACGCC----A----------AG--TT-A---A-GGATTAAC---ATTGAC---A--TATAT-TTACATTGAA--C-A-AATA-CCGCA-TTTAGT--AAAAGCAAATGC-ATGATTACA-TGG--A--TA-GAATATTGAA-C-CCTTTGGCTTC---CCATA
gi|7 : CTCGGGTCGAACACATAAT--CAG-AACGTAACC-ACCC-CA--C-ACCCAT--TAAATT-CTG---AGGCG---C-GCGCCC---T-CTTTCGTCTTAA-T
gi|8 : ttatatcttcaaatcaaacacacttgcaacatctttgaagccataatgatacatgtaaaatgaaacatggaaaattttgtacattccaatacatagccaacgtcagacatttgtgattcgtaaaacacatgccccgaaacctgttagctgcggaaaacacatacattgattaaccctgttcacgtacaaaacgaacgaccatatttggatgaattcaAACTAA--ATTG------AAC-GGTTTTACAAA---TAACAAGTACAGTAAC-------------TCGCGA-TCTACA----AAGGACAGC-ATAT-ACAGTT-TACAT--TCGTTACG-AA--ATT-CAA-AATA-ACCA-AATG---CACATTTACGGACT-ACCACATGTC----A----------AG--TTGA---G-GGATTAAC---ATT--T---A--TATA--TTACATAGGAACC-A-AATACCCGCA-TTTAGTAAAAAAGCAAATAC-ATGATTACA-TGG--AATTA--AATATTGAA---CCTTTGGCTTTTTGCCAT
gi|9 : AT--AAAATT-GCG---AGGCG---C-ACACCC---T-CTTTCGACTTAA-TGG-------TACTTAA-C---------------TT----------------ACAAAATTGAATGTAGAATTGCA-------AAT--TGA----CAAATC--AC-------AAAAGAGGA-----AA-----AT--A---CAAAAG-TC-GAACTAAC-ATTG------AAC-AAGTTACCAAA---TAACAAGTACAGTAGC-------------
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): CTTTTAAAAAGCGTTTTGTAAAGGAAAATGATCATGTATATATCTTCAAATCAAACGCACTTGCGACATCTTTGAAAGAAGAAAATTCTACAGCCATAATGATAAAATGAAACATGGAATATT