lowQualScore                  :                     11111111                                                                                                                                            1111111111111111111111111111111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                        11111111111111111111111111111111111                                                                                                                                                                                                                                                                                                                                                                                                                                                           111111111111111111111111111111111111111                                                                                                                                                                                                                 11111111111111111111111111111111111111111111111111111111111111111                                                                                             11111111111111111111111111111111111111111111111111111111111111111111111         
lowQualScore                  :      2              11111111    1        3    2     3      2       2       222    1111  11      11111   2222222222   111                   2222                         1111111111111111111111111111111111111111111111111111111111111    1           22222        2      1111   11  111111         8888888888888888888888888888888888           444                                  11   3333333333     1          2222222       333333333   1     22  1         1      1         1             4    11         5555      55555555555555    2   2    3333         22222    6666666      11          1111             1   2222    1   1   22222222     11    33333333333333333333333333333333333      22      222         66666666666666666666       1111111   22          555555555   22   2222222222          44444          444444444   22       1         66666666666666666666666666666   1      1   4444444     1  222   1111   1        1        22    1   1          2222           555555555555555555555     333     22      3    1   11     666666666666666666666666666666   11      111  111   11            5555555555555       22   11  222    222222222222222222222222222222222222222               333      11    1   5555555555555555555555555555555    3333           333    2                  1      33  1           111 1  111      3        22222           333333      22222     333     1    22222222222222222222222222222222222222222222222222222222222222222   222         1     1  2       99999999999999999999999999999999999  1         2222          11111111111111111111111111111111111111111111111111111111111111111111111     11  
lowQualScore                  :      0              66666666    4 5      1    4     2      9   5   7   5   000    5555  44 3    22222   9999999999   666     5 77          2222 22 88      6            4444444444444444444444444444444444444444444444444444444444444    0   0       33333   0 5  1      7777   11  777777    66   8888888888888888888888888888888888           333   99      0 5      8      777    11   2222222222     6     6    9999999  0    444444444   3  7  33  6      1  3  7 8 2         7  0    6     0    44    4 4  3333      88888888888888    6   3    4444         77777  0 3333333      44 6   7    6666     0 9     0   4444    0   0   77777777     33    11111111111111111111111111111111111      44  3   888         55555555555555555555       9999999   00  3   7   555555555   22   6666666666   7      66666          777777777   00       3   7     88888888888888888888888888888   3      5   8888888     2  555   6666   3  6     3        00    3   3  3       9999           222222222222222222222     444  0  22      1    0   33     111111111111111111111111111111   00      000  777   33    3    2  7777777777777       77   88  333    555555555555555555555555555555555555555   88    7  4  000      11    3   2222222222222222222222222222222    5555           444    0             4  4 5      11  3      3    111 0  777      0        99999    2      111111      44444     222  2  0    88888888888888888888888888888888888888888888888888888888888888888   333         3     3  3       22222222222222222222222222222222222  5  2      4444 4     3  77777777777777777777777777777777777777777777777777777777777777777777777     22  
lowQualScore                  :      .              ........    . .      .    .     .      .   .   .   .   ...    ....  .. .    .....   ..........   ...     . ..          .... .. ..      .            .............................................................    .   .       .....   . .  .      ....   ..  ......    ..   ..................................           ...   ..      . .      .      ...    ..   ..........     .     .    .......  .    .........   .  .  ..  .      .  .  . . .         .  .    .     .    ..    . .  ....      ..............    .   .    ....         .....  . .......      .. .   .    ....     . .     .   ....    .   .   ........     ..    ...................................      ..  .   ...         ....................       .......   ..  .   .   .........   ..   ..........   .      .....          .........   ..       .   .     .............................   .      .   .......     .  ...   ....   .  .     .        ..    .   .  .       ....           .....................     ...  .  ..      .    .   ..     ..............................   ..      ...  ...   ..    .    .  .............       ..   ..  ...    .......................................   ..    .  .  ...      ..    .   ...............................    ....           ...    .             .  . .      ..  .      .    ... .  ...      .        .....    .      ......      .....     ...  .  .    .................................................................   ...         .     .  .       ...................................  .  .      .... .     .  .......................................................................     ..  
lowQualScore                  :      4              00000000    1 0      5    9     9      6   0   5   0   888    2222  44 2    55555   6666666666   111     7 99          0000 99 00      7            4444444444444444444444444444444444444444444444444444444444444    0   8       88888   8 6  0      0000   00  000000    44   8888888888888888888888888888888888           777   22      8 6      0      999    33   0000000000     0     7    0000000  7    333333333   3  3  33  3      0  3  3 3 3         3  7    7     0    00    0 0  0000      22222222222222    7   3    3333         77777  7 3333333      00 7   3    5555     8 2     0   2222    0   0   00000000     88    88888888888888888888888888888888888      88  2   000         33333333333333333333       3333333   77  7   3   777777777   77   0000000000   3      77777          000000000   77       3   3     00000000000000000000000000000   3      3   3333333     0  777   3333   3  7     3        77    3   3  7       0000           777777777777777777777     333  7  00      7    0   88     555555555555555555555555555555   88      888  555   88    2    5  2222222222222       00   33  333    333333333333333333333333333333333333333   00    3  0  000      00    3   3333333333333333333333333333333    0000           000    0             0  0 5      77  3      7    000 0  555      0        55555    5      888888      55555     222  5  0    77777777777777777777777777777777777777777777777777777777777777777   333         3     3  3       88888888888888888888888888888888888  5  5      0000 0     0  00000000000000000000000000000000000000000000000000000000000000000000000     00  
consensus                     :  GGCAAGTCTATTAAGTTCT--------GCTAAG-ACAACC-AGCA-TTGGA-TGTTTT-GCA-GTG-CAC-TCCGAAGGATNTCCTT-TAATAAA-----TTT--GAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCACTC-CC-CAATAATTTCAACTACAATA--AATAGAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTAACGTGG----ATT--AT---C-AATACC-AATAATTCT-TT-TCA--TTTTAAA-AACA-TGCT--TTTCTGGCTTTTT-TCA--ATAAGCACAGCTGTT-GCTAAGTT-AACCTCCCA----TTACA-TTTCA-CATAACACCTAA-ATAGCAATATT-TTGG-TAGCAA-TTTGT-ATTATATTGCCAT-TAATAGCAAATTCATTCCCTTGAGGTTTGC-CATTTGAGTTNANTATACCAAAACTCTTGG--TTTATCAACATTGACCTGCG--GNTTTCCAGTT--T--GAAC-AGTA--TTTGCT-AAGAATATCAA-G-GCTGTTTTTGTAAA-CCACTT-TCGC-TTT-CAG--A--A--GATTA--CAATATACCTGAGATCAGC--ATACTA--ACAAGACAAGTTTACATAGAACAT-T-GTTTACTTGTA-CA-GGATCA-CA--T--TTCCATTTTTC-GAGTCA-TCGACAATACG-CATCAA-TAAA-TAT--ATTG--A-GAGTATGGGGGCTT-AAAACATCCCCTT------GTTT-GACACCA-CATTCAGAA--TTG-A-ATAC-ATCACTT-A----AC-CAT-CAGAAA-TTT-GATCGTTACTCGTTT--GTC-TTNCTA-TACATGGA-AAATAGAA-ATATT-AAA-CANTTTTTGG--GGAATATTAGATT---C-AAGGAG---T---T--ATAAA---AAAAC--CAATCT-CCGG-ACA--GCGTCAAA--TG-CTTT--CCTATAGATCAATAT-GAAAGCCGCAT-ATAC---TTT--TTTGTTTTTGTAATCGGTCAATTA-TTGTTTTTGATA--GA---GAAT-------AAG-TG-C-GTTT--GATG-TCC-T-ACA---TTTTTTTTGAAANCC-AATTTGGTTGTTCA-CTTG-TTNAA-TGACAT-AGA-GT-TT-------ACAATATNTCAAGTGGCCTTNNAATGAGATTATTCTGTTGNAANGTCTTCCT--AG-TTTGAGNTAAT-T-G-AT---ATACCTCTGTAGTTGTCG-AGGGTCAAGCCTAT--T-ACCAGAT----TTATACA-AGCAA-TACTAAAAT-AACTT----TTTCATATCCA-ACT-TCTTGGGAATTCA-C-AGAA---TTGAAA---ACAAG---TTGAACAAT-TTTTC-CA-AAGGTTTC-AGCATTGCATATCCCCCCAATTTTTCTTTANA-CATTTNATTTGATATCANATCCANGGTCTAANGACTTGATGTGCTCTTCACCATTTTTNAGGAACTTNAA-ATGCATTTTTTTATTTCTTGAATTGTATGGTGGTG
Reference ( gi|1 )            :  GGCAAGTCTATTGAGTTCTAGAATACTGCTAAG-ACAACCTAGCAATTGGAATGTTTTTGCA-GTGGCAC-TCCGAAGGATTTCCTT-TAATAAA-----TTT--GAGG---CGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCACTCACC-CAATAATTTCAACTA-AATA--AATAGAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTTACATGG----ATT--AT---C-CATACC-AATAAGTCTATTGTCA--TTTTAAAGAACA-TGCTATTTTCTGGCTTTATATCA--ATAAGCACAGCTGTT-GCTAAGTTAAACCTTCCA----TTGCAATTTCAACATAACACCTAAAATAACAGTATTGTTGG-TAACAA-TTTGTAATTTTATTGCTAT-TAATTGTAAATTCATTTCCCTGAGGTTTGCACATTTGAGTTAAATAT-CAAAAACTATTGGAAGTTATCTACAT-GACATGCA--AGTTTCCAGTT--T--GAGCCAGTAAATTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCATGT-TTGC-TTT-CAG--A--A--GATTA--CAATATTC-----ATCAGCCAATATTA--ACAAGACAAGTTTACATAGAACATAT-GTTTACTTGTAACAAGGATTC-CAATT--TTCCATTTTTCAAAGTCA-TTGACAATACC-CATCAAATAAAATAT--ATTG--A-GAGTATGGGG-CTTGAAAACATCCC-TT------GTTT-GACACCA-CATTCAGAA-ATTG-A-ATACCATCACTT-G----AA-CAT-CAGAAAATTTTAATTACTACTCGTTT--GTC-TTACTA-TACATGGA-AAATAGAA-ATATT-AAA-CAGTTTTTGG--GAAATATTAGATT---C-AAGGAG---T---T--ATAAA--TAAGACACCAATCTACCAG-ACA--GTGTCAAAAATGACTTT--CCGA-AGATCCATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGTACTGGGTGAATTATTTGTTTTGCATA--GA---GAAT-------AAGATG---GTCT--GATGATCC-TAACA--GTTTTCTTTGAAAACCAAATTTGGTTGTTCA-CTTACTTTAAGTGACATAAGA-GT-TT-------ACAA-A-TTCAAGTAGTCTAGTAATG-GATTATTCTATTGAAAAGTTTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCT-TGTAGTTGTTG-AGGGTCAAGCCTA---T-ACCAGAT----TTATACGAAGCAA-TACTAAAAT-AACTT----TTTCATATCCACACT-TCTTGGGAATACA-C-AGAAAG-TTGAAAGGTATAAG---TTGAACAAT-TTTTC-CAGAAGGTTTCAAACATTGCATATCCGCC--ATTTTTC---AAAGCATTTCATTTGATATCATATCCATGG---AAAG----GA----CTCTTCACCA-TTTTCAGGAACTTTAAAAGGCA-GTCTTTATTTC---AATTA-ATGGTAATGTCTGAGTTCAAAGAAAATGATTATGTTGCAGTATTATCTTTCAAAACATGAATTTATCTTATTATACTGCCTATGAAAAATTGTTGTGATGTGTTGATCATGCCTTTGTTAAGGTTTTGTAAAAAATTGGGATAGAATTCCACAGGATGAACATCAAATGAGAATGAAATTTGTCCGGTATTAGGTTTTGATCTAATTTGTTATCAAACAATTCGCCAGAATAATTTTGGATTTTTTTTCAACGTATGACTGTATAAGGTCATTGCAAAATTGTAATTTCTGTAGTTTTGTTCTTCAAATTTACATAGTCCTTCTGTAATTTGGCTTTGGAATGTAATAGAACATTTTCCTGATTCTCACATAATAAAATGGATGCTTGTTGACAAGCTTTTTCATAGTTTTTTAAACTTGTAATTTGCGTAGATCCGAGACACGATGTGAGAACCACATTTTTTTCCTTATTCTATTTTAATTTATGTGCCTTGGCCCTCTCTTAATAAATTTGGGCCGACATTTTTTGGCACATTACACACTAGTATTGAGCTGAAGGCTTTTGAAAATGGAGTCACTAATCCCGAACAAATTCACCCTTCATGAAATTCTGCAAATTTAATTTTGGATAGATTACTGTGAGATATTCTTGTGTAAGATTCTATTGCATCTTGTCCACAAAAACTTCCGGATAATGGTATTTTAAAATTATATGTTTTATTGGAGCTTGGTTCTGAAGCAAAAATTATCAA
gi|2                          :  GGCA-GTCTATTGAGTTCC--------GCTAAG-ACGAACCAGCATCTGGA-TGTTTT-GCATGTGGCAC-T---GAGGATT--CTT-TA-TAAA-----TTT--GAAG---TGAA---TTTTCAT--ATGTTTGAAAA---C-TCT-TTTGGAATGAGAGATCCAC---CC-CA-TA-TTTCA-CTA-CATA--AA--GAAGGA--CCGG-TAGTACATATTAA---ACATCAAAAAGTTTTCTTCATAAAAGTTT-ACATG-----ATT--AT---C-CATACA-AAT-----TGTTTTCAACTTTTCTA-AACA-TGCT--TTTCTGGCTTTTT-TCA--ATAAGCAC-GCTGTTTGCTAAGTTTAACCTTCCA----TTGCA-TTTCAACATAA-ACCTAA--TA-CAATATT-TTGGCTAGCAAATTTGTA-TTATATTGCTAG-CA-TTG--AATTCATT--CCTGAG--TTGC-CATT-GAGTTAAATA----AAAACTCTTGG--TTTATTAACATTGACCTGCA---GTTTCCAGTTATT--GAGC-AGTA--TTTGCT-GA-AATATCAA-GAGCTGTCTTTGTAAA-CCACTT-TTGCCTTT-CAG--ACAA--GATTA--CAATAT-C-----ATCAA-------TA--ACA-GAC--GTTTACA-AGAACAT-T-GTTTACTTGTA-CA-GGATCA-CA--T--TTCCATTTTTCAA-GTCAATTGACAACACA-CA----ATAAA-TAT--ATTAGAA-GAGTATGGGGACTT-AAAACATCCCCTT------GTTTTGACACCA-CATTCAGAA--TTG-AGATAC-ATCACTT-A----AAGCATTCAGAAA-TTTTA-TTCTTACTCGTT---GTC-T-ACTAATACATGGA-AAATAGAA--TATT-AAAACAGTTTTTGG--GAATAATTACATT-----AAGGAGATTT---T--ATAAAACTAAAAC--CAATCT-CCAGGACA--GTGTCCAA--TG-CTTT--CCTATATGTCAA-ATAGAAGGCCGCAT-A-AC---TTTAATTTGTTTTTGTAATGG-TCAATTAATTGTTTTTGATA--GA---GAAT-------AAG-TG---GTCTTGAATG-TCCATCACA--GTTT-CTTTGAAACCCAA-TTTGGTTGTTCA-CTTA-TTCAA-TGACATTAGA-GTATT-------ACAA-ATTTCAAGTGGTCT-GTAATGAGATTATTCTATTGTAAAGTCTTTCTA-AG-TTTGAGATAATGT-GAAT---ATACTC-TGTAGTTAGTGTAGAGTCAAGCCTATATT-ACCAGA-----TTATTCACACCAATTACTAAATC-AAC-T----GTTCATATCCA-ACT-TCTTGGGAATA-A-C-ACCAAGATTGAG----ATAAG---ATGAACAATGTTTTC-CA-AAGGTTTC-AACATTACATATCC
gi|13                         :  GGCA-GTCTATTGAGTTCT--------GCTA-G-ACAACC-AGCA-TTGGA-TGTTTT-GCA-GTG-CAC-TCCGA-GGATTTC-TT-TAATAAA-----TTT--GAAG---TGAATTTTTTTT-T--ATGTTTG-AAA---CATC--TTTGGA-TGAGAGATCC
gi|11                         : tGGCA-GTCTATTAAGTTCT--------GCTA-G-ACAACC-AGCA-TTGGA-TGTTTTC-CA-GTG-CAC-TTC-AGGGATATCCTT--AATAAA-----TTT-------------------TC-T--GTGTTTGAAA----CATCT-TT-AAA-TGAGAGATTCACT--CC-CAAT-ATTGC-ACTACAATA--AA---AAAG-AACTGG-AAGTA-
gi|14                         :     tAGTCTATTAAGTTCT--------GCTA-G-ACAACC-AG-AATTGGA-TGTTCT-GTG-GTG-CAC-TCCGA-GGATTT--TTATAATAAA-----TTT--TAAG---TGAA-TTTTTTC-TAAATATATGAAA-----ATCC-TTTcatta
gi|21                         :      AGTCTATTAAGCT--------CTGCT-AG-ACAACC-AGC-ATTGG-GTGTTTTcataaatttac
gi|6                          :                       cATTCTGCTAGGGACAACGCAGCA-TTGGATTGTTTT-GCA-GTTGCAC-TCCGA-GGATTTTCTT--AATAAAGGGGGTTT--GAAGGTGTGAA-AATTTTC-T--ATGTTTGAAAAGAACATCT-TATGGA-TGAGAGATCCA--CATC-----AATC---ACTACAATA--A--AGAA--GAACTGG-TAGTT-AC----AGATACAT-AAAAAGTTTTTCT-T-AAAAGTTTAGTCTGG----ATTGGATGGGCGCATACCAAATAATTCT-TT-TC---TTTTAAAAAACT-GGC--TTTTCTGGCTTT-TTTCA--AAGTGCACAGCGGTT-GCTAAGTT
gi|4                          :                    gtggcagtcattgAG-ACAACC-AGCA-TTGGG-TGTTTT-GCA-GTG-CACCTCCCGAGGATAT--TT-TAATAAA-----TTT--AAG----TGAA-ATTTTTC-T--ATGTTTGAAA-------CTCTTTGGC-TGAGAGAACCAC--GCC-CA-TA-TTTCA-CTA-CA-----ATAAGAAGAA-CTGGGTAGTA--CAATAG----CATCAAAAAGTCTTT-TAT-AAAAGTTT-ACATGG----ATT--AT---C-AATAC---------------TCA--TGCT---------TGCT--TTTCTGCCTTTTTA--A--ATTAAC----CTCCC-AATAGG---AATC--CCA----TTACA-TTTCT-CATAACACCTAATA-AACAGTATTTTTG--TA-CAA-TT-GTTATTATATTGCCATCTAATAGCAAATTCATTCCCTTGAGGTTTGC-CATTT-AGTTTATTATACCAAAACT-TTG--ATTTAT--ACATTGAC-TGCA--GTCTTCCCGTT--T--GAAC-AATA--TTTGCT-AAGAAT--CAAAG-GCTGTTGTTGTAAA-CCACTT-TCGC-TTT-CAG--A--AAAGATTA--CAAT-TACCTGAGATCAG---ATAC----A-AAGACAATTTTACAT-GAACAT-T-GTTTACTTGTA-CAGG--TTCACA--T--TTACATTTTTTCAAGTCA-TTTACAATACG--ATCAA-TAA--TAT--ATTG--AAGAGTATGGGGGCTT-AAAACATCCCCTT------GTTT-GACACCA-CATTCAGAA---TGTA-ATAC-ATCACTT-ATCATAC-CAT-CAGAAAATTT-GATCG-TACTCATTTAAGTC-TTGCTA-TA-ATGGA-AAATAGAA-ATATT-AAA-CAATTTTTGG----AATATTAGATT---CAAAGGAG---TTTAT--ATAAA--AAAAATAATAATTT-CTGG-ACA--GCGTC--AAATG-CTTT--CT-A-AGCT-CATAT-GAAA--CGCATGATAC---TTT--TTTG-TTTTGTAAATGGT-CATTA-TTGTTTTAGATA--GA---GAAT-------ACG-TGTC-GTTT--G----TCC-T-ACA----TTTTTTTG-AAACC--ATTTTGATATTCA-CTT--TATCAATGACAT-AGA-GT-TT-------ACA
gi|8                          :                tgacagtctttagctctgt-ACAACC-AGCA-TTGGA-TGTTTT-GCA-GTG-CAC-TCCGA-GGATATCTTT-TA-TGAT-----TTTTTAAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CA-CC-TTTGGA-TAAGAGATTCACTCCCCTCTAT-ATTTC-TCTACAATAAGAATTGAAAG----T-G-CAATA-GC-AT-AGA-A-AT-AAA------TTCTAA-AAG---TTTACATGGATTAATT--AT---C-AATACC-AATAATTCT-TT-TCA--TTTTGA--AACA-TGC--CTCCCTGGCTTTTTTTCAATATAAGCACAGCTGTT-GCT
gi|18                         :                                                   ctattTTTTTGCA-ATG-CAC-TCCG-AGGATATCTTT---ATAAA-----TTT--
gi|20                         :                                                                                                                                                                                                             gtattctattaagttctgctagacatCATCAAAAAGTTTTTC--A-AAAAG-TTAACGTGG----ATT--AT---C-AATACC-A
gi|10                         :                                                                                                                                                                                                                                                                                             ACC-AATAA--TTATTTTCA--TTTCAAA--ACAATG----TTTTTGGCCTT-T-TCA--ATAAGCACAGCTGTT-GCTAAGTTAAACCTCCCATTTGTTAC-ATTTCATCATAACACCT-GAATAGCAATATT-TTGG-T-ACAA-CTTAT-ATTGTATTGTCAT-TAATAGTAAATTTATTCCCTTGAGGTGTGC-CATTTGAG
gi|19                         :                                                                                                                                                                                                                                                                                               C-AATAATTCT-TT-TCA--TTTTAAA--ACA-TGTT--TTTCTGGCTTT-T-TCA--ATAAgccat
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTAGA--TTTTCAACAT-GACCTGTGTTAATTTCCAATT--TTTGAAC-AG--AATTTTTTCAAGGATATCAA-A--CAATTCTGGTAGGTCCA-GTCTTAC-TTTTCTG--G--A--CAATAAACAATAT-C-----ATCAGC----ATTACAATAAG-CA-GTTCACAGAGA---TATCACCAATTTG-GACA-GGATCA-CAATTACCTCTACT-----GAGTC--TCAACA-TGTCGTATTAA-TAAAATATTGAAGG--A-GAG-ATTGGG-CT--AAGATATGCC-TTTCCTCTGTT--AACACCAGCAT-CTGACTAT---A-AAAGCTTCACTGAG----AC-CAT-TTGAAACTTT--ATTGTTGGTT-TTT--GTCATTTTCA-TACATTTAGAAATAAAATATATTCAAA-CATATACTGGTGGGTATGTTAGATTGTTT-TAGAAG---T---TTAAGAAA---AAGTCCCCAAACCCTCAT-TTATTGTGTCAAA--TG-CTTTGCCCGTTAGATCAAT-T-AAATGCTGGTT-AACC---CTT--TTTGTTTTT-TATTCTATAA------TGTTTTTGATATTGACCTTAATGTTGTGGAAAGTGGCTGTTT--GATG-TTC-TACTCTTTTTTTTTTTTATAGCC-AATTTGAT--TTCATCGTGATTAAATTTA---AAGATGC-TTCACTCTAACAATA-ATCAAGTAACCTTTGAATG-AATTATTCTGTTAAAATG-TTTCCTCAAG-TTTGAGTTGAT-TGG-ACCGAATACCTCTGTAATTACAA-GGAAT--AGTGT----T-ACCAGTTTTTGTTGTAAAAAG----TACC--AATGAACTCTCGATTCCAT-TACAGATTGTCCT--GAAT-------------TTAAAA---ACAAGACTTTGAACAAT-TTTTTGTAGATGGTTC--AGCA--GTATATCCCTCCAATTTTTCTTTATA-CA-TTCATTTGA----AAATTTAGGGTCTAATG----GATGTGCT-TTTA-CA-TTTTGAG--ATTTT---ATGCATTTTTTTATTTCTTGAATTGTATGGTGGTG
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ttaccatggtgaatttttagaataagaatAA-G-GCTGTTTT-GTAAA-CCACTT-TCGC-TTT-CAGAAA--A--GATTA--CAAT-TACCTGAGATCAGC--ATA-CA--AC-AGACAA-TTTACAT-GAACAcagtatcattctccctgggttgttttagaacatgaaattgttagaatggatctgttgaaaatcattttgaatagattttccagttgattgagtgttattgaaaaactgaatataaaat
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          G-ACA--GCGTCAAC--TG-CTTT--CCTA-AGATC-A-AT-GAAAACTGCAT-ATACTTTTTT--TTTGTTTTTGTAAT-GGTCAATTA-TTGTT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            atttctgTTCCT--AGGTTTGAGGTAAT-T-G-AT---ATACCTCTATAGTTGTC--AGGGTCAAGCCTAT--T-ACCAAAT----TTATAC--AGCAA-TACT-AAAT-AACTT----TCTT---TCCA-ACT-TCTTGGGAATTCACC-AGAA
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TAAT-T-G-AT---ATACCTCTGTAGTTGTTA---GGTCAAACCTA---TTACCAGAT----TTATAT--AGCAA-TACTAAA-----------------TAT--------TCTTGGGAATTCA-CCAGAA---TT--AAGTTA-AAG---TTGAACAAT-TTTTC-CA-CAGGTTTC-----TT---------CC--ATTTTTC---AA--CATTTAATTTGATATCATATCCATGG---AAGAACTTAA----CTCTTC-CCATTTTTCAGGAACTTGAAttg

Unaligned ( gi|5 ): ATCACAGGGAGATTGGTAGGGTGGTTCACACATTATTTGCATGTCTTATCTATTGTTGTAACATCTTTTCAAAATTGTTTTGGACTGGTATCTATGTTTATGTTTTGATTTCATTACAAATTTTTTTGTTTGTATGATTTTTTCTTCCTGCCTTACAAAGCCTTCTGTATTTAGATATATACTTGTAAAAGAGTTGTCTGTATTTGGCCATTTAAAGGTGCTTTGGTTGTGATCAACTTTTCATATTTCTTACTGTATTCCGAAGGTCAGTACACGACTCCGAAAACCAATGGTTTCTTATTGCATTGTCGAGATTTTGTGTTTAGGTGTTCTTAGCTAACATATTTAGCCTGAAGTTTTTGCCACAACAATCTTGTATAGGTAGTGCTAAATGAACCTTAACACTAGTGTCAGTGTCTGTGTAATCTAGTTTCAATAAATTCTGAAAATGTAGCCTATGTTGGCTCTTGTGTTTTTTTAGAATACAATTCTATTGAATCTTTACTCCAAATAAATTTACCTGGTTAGGGGTTTAATTTGTTTACTCTAACTTTATTTTCTTGCTCGAGACAAAGATTGTAAA
Unaligned ( gi|7 ): TCAGGGGGAAGATTGGGGTAGGGGTGGCACACATATTTTGCCATGTTATCTAATTTGTGTAACATCTTCCAAAATGATTTTGGGACTGGTATCTATAGTTTTTGCTTGATTTTCATTAAAATTTTGTGTTAATGATCTTTCCTGCCTGCTTTACGAAAGCCTTCTGTATTTAAGGTGATTTGTTAACTTTATACTTGTAAAACAAGAGTTGTCGTATTGGGCCCATTAAAGGTTGGTTGGTCATTGATTGCTGTTACTGTATTCCGAAGGTTAAT
Unaligned ( gi|12 ): GATTTTTTTTTTTTTTTTTTTTTTTACTTCATATGGTAAGGACCTAAATATTTCTCTCCAACATTTGTTTTAAACACGAAATTGTTTAGCAATGGTTTTGTGAAGATCATTTTGAATGTTATTACGGAATTGAGCGTTTTAAAGAACTGATAAAA
Unaligned ( gi|22 ): CCACTGCCCATATTTCACTACAATAAAGAAGAACTGG
Unaligned ( gi|23 ): GAGATATCACCAATTTGGACAGGATCACAATC

lowQualScore                  :         1              11111111    1                                               111      1           11111   111          111                   1111    11                   3333333333333333333         4444444444444          11  3333333                              1        11111111111                               1111                                                      1  11        2222  1     222          1     1       1    1  1   1     1          1111        111                                       2222      1    11     11            22222         11111   1    11       1                                               11111111     11    444444444     333333333        111      11      1           1  1         11      1      11    11      1    11   1   11        333333333              1       222222   1  1          1       1   1   1   1        333333    1    1   11                  11   11    1         1        1     2           2222     1        33333      2222222      111   333                33333333333     11          11    2     1111                  111   11              1            11           11  111    44444444444444444  11111   1   1111  3333333             11              1   222          111   1  1  3333333    3333                  11                  1     22  1                  111              22222           11             11    222          2        3333333333333                  33333     11     222222   111         1     1  11       222222222       3333       4444444                          99999999999999999     3333333           1          11          222     1         
lowQualScore                  :         5              66666666    9 4  4   4 4    4 4    4 4     4   4  4 8   4   555    1 1   66 1    11111   000   888    111     5 66       3  2222 0  00      5            4444444444444444444         1111111111111    5     00  4444444    6           333 6   3     8 4      77777777777 88    2  77    0 5  5   77    5555       77         88  5     77        3      6      0 6  22        1111  0     777     2    0  9  0       0    0  9   0   0 0   1      0000        777          33    2     8    88     555  7777      2    33   3 00   66   8   44444         88888   0    33       0  2   3    999        5     8          8   8   88888888     11    888888888     555555555  444 0 111      66  0   0           0  0         33   2  0      22    33 22   0  3 99   0   33  3     000000000   3  8   6   0       000000   0  0  3       0   3   0   0 0 0   0        666666 2  0    0   33   6  999     99  33   33 1  0   2     0      3 0     0     1     5555     0        44444      6666666 3    777   555 99     8  8    11111111111     11     8    11  0 0     2222 8   55      8 6  444   11    0       1 8    5   8 8 11      3    33  777    88888888888888888  44444   0   8888  8888888           1 22        33    0   888  1    3  777   0  0  2222222    6666      0 0 9999    44        0   1  1  2     33  0      1    8 8 8  444              11111        3  11  0       0  11    666     8    0    8 0 4444444444444    8             44444     11   3 000000   777         0     0  00       333333333       2222       2222222  7  1      7    1     1  00000000000000000     0000000    1  6   3  88  3   88          111     5         
lowQualScore                  :         .              ........    . .  .   . .    . .    . .     .   .  . .   .   ...    . .   .. .    .....   ...   ...    ...     . ..       .  .... .  ..      .            ...................         .............    .     ..  .......    .           ... .   .     . .      ........... ..    .  ..    . .  .   ..    ....       ..         ..  .     ..        .      .      . .  ..        ....  .     ...     .    .  .  .       .    .  .   .   . .   .      ....        ...          ..    .     .    ..     ...  ....      .    ..   . ..   ..   .   .....         .....   .    ..       .  .   .    ...        .     .          .   .   ........     ..    .........     .........  ... . ...      ..  .   .           .  .         ..   .  .      ..    .. ..   .  . ..   .   ..  .     .........   .  .   .   .       ......   .  .  .       .   .   .   . . .   .        ...... .  .    .   ..   .  ...     ..  ..   .. .  .   .     .      . .     .     .     ....     .        .....      ....... .    ...   ... ..     .  .    ...........     ..     .    ..  . .     .... .   ..      . .  ...   ..    .       . .    .   . . ..      .    ..  ...    .................  .....   .   ....  .......           . ..        ..    .   ...  .    .  ...   .  .  .......    ....      . . ....    ..        .   .  .  .     ..  .      .    . . .  ...              .....        .  ..  .       .  ..    ...     .    .    . . .............    .             .....     ..   . ......   ...         .     .  ..       .........       ....       .......  .  .      .    .     .  .................     .......    .  .   .  ..  .   ..          ...     .         
lowQualScore                  :         5              11111111    9 0  0   0 0    0 0    0 0     0   4  4 9   4   333    0 2   33 9    11111   666   888    999     0 99       2  0000 1  11      7            1111111111111111111         3333333333333    7     55  6666666    7           555 7   2     0 8      00000000000 22    5  11    7 7  7   99    9999       99         00  7     99        2      7      8 0  55        2222  0     555     5    0  8  5       0    0  0   0   2 0   2      5555        555          22    5     0    88     222  5555      8    88   2 00   55   8   55555         55555   0    88       0  5   2    222        6     0          0   0   00000000     00    222222222     000000000  888 8 444      22  8   0           0  0         88   5  0      00    22 22   0  2 22   0   22  2     000000000   2  8   5   0       000000   0  0  2       0   2   0   0 2 0   0        000000 5  0    0   88   5  222     88  88   22 0  0   5     0      2 0     0     0     0000     0        00000      0000000 2    555   000 00     0  0    00000000000     00     0    00  6 4     8888 0   44      0 0  000   00    8       0 2    6   0 0 00      5    88  555    00000000000000000  22222   0   5555  0000000           0 55        55    0   000  0    2  555   0  0  5555555    0000      7 7 0000    00        7   0  0  0     88  0      0    0 0 0  000              66666        2  00  8       8  00    666     0    4    0 8 4444444444444    0             00000     00   2 555555   555         0     0  88       555555555       3333       0000000  3  0      3    0     0  33333333333333333     0000000    0  7   3  33  0   55          000     5         
consensus                     :     GGCAAGTCTATTGAGTTCT--------GCTA-G-AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGAAGGATNTCCTT-TAATAAA-----TTT--GAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TC-CCCAATA-ATTTCAACTACAATAA--A--GAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTAACATGGATT--A----T---CA-ATACCAA-TAATTCT-TT-TCA--TTTTAAA-AACATGC--TTTTCTGGC-TTT-TTTCA--ATAAGCACAGCTGTT-GCTAAGTT-AA-CCTCCCATT----GC-ATTTC-A-CATAACACCT-AAATAACAGTATT-TTGG-TAGCAA-TTTGT-ATTATATTGCCAT-TAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-TGAGTTNANTATACNAAAACTNTTGG--TTTATCAACATTGACCTGCG--GNTTTCCAGTT--T--GAG-CAGT--ATTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCACTTTCGC-TTT-CAG--A--A--GATTA--CAATATACCTGAGATCAGC--AT-ACTAACAAGACAAGTTTACATAGAACAT-CGTTTACTTGT-AC-AGGATCACA--TTTNCA-TTTTTC-GAGTC-ATCGACA-ATACGCATC-AAT-AAATATATT--G-A----GAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAG-AAT-TGA-ATA-CATCACTT-A----ANCA-TCAG-AAA--TTTNATTGTTACTCGTTT--GTC-TTACT-ATACATGGA-AAATAGAA-ATATT-AAACAGTTTTTGG--GGAAT-ATTAGATT---C-AAGGAG---T---TATAAA---AAAGACACCAATCT-CC-GGAC--------A--GCGTC--AAATG-CTTT--CCTATAGATCAATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGTAAT-GGTCAATT-A-T--TGTTTTNGATA--GA---GAAT--------AAG-TG--CGT-TTG-ATG-TCC--T-AC----A-TTTTCTTTGAAANCC-AATTTGGTTGTTCA-CTTA--TTNAATGACA-T-AGA-GT-TT-------ACAA-AT-TCAAGTAGTCTTGTAATGAGATTATTCTATTGAAAAGTCTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCTCTGTAGTT-GTC-AGGGTCAAGCC--TATTACCAGATTT--ATAC-A-AGCAA-TACTAAAAT-AACTT----TTTCATATCCA-ACTTCTTGGGAAT-NCACCAGAA--TTGAAA---ATAAG---TTGAACAAT-TTTTC-CA-AAGGTTTC-AACATTGCATATCCCCC--ATTTTTC---AAA-CATTTCATTTGATATCATATCCATGG---AANG----GA----CTCTT-CACCA-TTTTCAGGAAC-TTNAAANGCATNTCTTTATTTCTTGAATTGTATGGTGGTG
Reference ( family-2979 )     :     GGCAAGTCTATTAAGTTCT--------GCTAAG-AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGAAGGATNTCCTT-TAATAAA-----TTT--GAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TC-CCCAATA-ATTTCAACTACAATAA--ATAGAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTAACGTGGATT--A----T---CA-ATACCAA-TAATTCT-TT-TCA--TTTTAAA-AACATGC--TTTTCTGGC-TTT-TTTCA--ATAAGCACAGCTGTT-GCTAAGTT-AA-CCTCCCATT----AC-ATTTC-A-CATAACACCT-AAATAGCAATATT-TTGG-TAGCAA-TTTGT-ATTATATTGCCAT-TAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-TGAGTTNANTATACCAAAACTCTTGG--TTTATCAACATTGACCTGCG--GNTTTCCAGTT--T--GAA-CAGT--ATTTGCT-AAGAATATCAA-G-GCTGTTTTTGTAAA-CCACTTTCGC-TTT-CAG--A--A--GATTA--CAATATACCTGAGATCAGC--AT-ACTAACAAGACAAGTTTACATAGAACAT-TGTTTACTTGT-AC-AGGATCACA--TTTCCA-TTTTTC-GAGTC-ATCGACA-ATACGCATC-AAT-AAATATATT--G-A----GAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAG-AAT-TGA-ATA-CATCACTT-A----ACCA-TCAG-AAA--TTTGATCGTTACTCGTTT--GTC-TTNCT-ATACATGGA-AAATAGAA-ATATT-AAACANTTTTTGG--GGAAT-ATTAGATT---C-AAGGAG---T---TATAAA---AAA---ACCAATCT-CC-GGAC--------A--GCGTC--AAATG-CTTT--CCTATAGATCAATAT-GAAAGCCGCAT-ATAC---TTT--TTTGTTTTTGTAATCGGTCAATT-A-T--TGTTTTTGATA--GA---GAAT--------AAG-TG--CGT-TTG-ATG-TCC--T-AC----A-TTTTTTTTGAAANCC-AATTTGGTTGTTCA-CTTG--TTNAATGACA-T-AGA-GT-TT-------ACAATATNTCAAGTGGCCTTNNAATGAGATTATTCTGTTGNAANGTCTTCCT--AG-TTTGAGNTAAT-T-G-AT---ATACCTCTGTAGTT-GTCGAGGGTCAAGCC--TATTACCAGATTT--ATAC-A-AGCAA-TACTAAAAT-AACTT----TTTCATATCCA-ACTTCTTGGGAAT-TCA-CAGAA--TTGAAA---ACAAG---TTGAACAAT-TTTTC-CA-AAGGTTTC-AGCATTGCATATCCCCCCAATTTTTCTTTANA-CATTTNATTTGATATCANATCCANGGTCTAANGACTTGATGTGCTCTT-CACCATTTTTNAGGAAC-TTNAAATGCATTTTTTTATTTCTTGAATTGTATGGTGGTG
gi|1                          :     GGCAAGTCTATTGAGTTCTAGAATACTGCTAAG-AC-AAC-CTAGCAAT-TGGAAT-GTTTTTGCA-GT-GGCAC-TCCGAAGGATTTCCTT-TAATAAA-----TTT--GAGG---CGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TCACCCAATA-ATTTCAACTA-AATAA--ATAGAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTTACATGGATT--A----T---CC-ATACCAA-TAAGTCTATTGTCA--TTTTAAAGAACATGCTATTTTCTGGC-TTTATATCA--ATAAGCACAGCTGTT-GCTAAGTTAAA-CCTTCCATT----GCAATTTCAA-CATAACACCTAAAATAACAGTATTGTTGG-TAACAA-TTTGTAATTTTATTGCTAT-TAATTGTA---AATTCATTTCCCTGAGGTTTGCACATT-TGAGTTAAATAT-CAAAAACTATTGGAAGTTATCTACA-TGACATGCA--AGTTTCCAGTT--T--GAGCCAGTAAATTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCATGTTTGC-TTT-CAG--A--A--GATTA--CAATATTC-----ATCAGCCAAT-ATTAACAAGACAAGTTTACATAGAACATATGTTTACTTGTAACAAGGATTCCAATTTTCCA-TTTTTCAAAGTC-ATTGACA-ATACCCATCAAATAAAATATATT--G-A----GAGTAT-GGGGCTTGAAAACAT--C---CCT-TG-TTTGACACCA-CATTCAGAAAT-TGA-ATACCATCACTT-G----AACA-TCAG-AAAATTTTAATTACTACTCGTTT--GTC-TTACT-ATACATGGA-AAATAGAA-ATATT-AAACAGTTTTTGG--GAAAT-ATTAGATT---C-AAGGAG---T---TATAAA---TAAGACACCAATCTACC-AGAC--------A--GTGTCAAAAATGACTTT--CCGA-AGATCCATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGTACTGGGTGAATT-ATT--TGTTTTGCATA--GA---GAAT--------AAGATG---GT-CTG-ATGATCC--TAAC----AGTTTTCTTTGAAAACCAAATTTGGTTGTTCA-CTTACTTTAAGTGACA-TAAGA-GT-TT-------ACAA-AT-TCAAGTAGTCTAGTAATG-GATTATTCTATTGAAAAGTTTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCT-TGTAGTT-GTTGAGGGTCAAGCC--TA-TACCAGATTT--ATACGA-AGCAA-TACTAAAAT-AACTT----TTTCATATCCACACTTCTTGGGAAT-ACA-CAGAAAGTTGAAAGGTATAAG---TTGAACAAT-TTTTC-CAGAAGGTTTCAAACATTGCATATCCGCC--ATTTTTC---AAAGCATTTCATTTGATATCATATCCATGG---AAAG----GA----CTCTT-CACCA-TTTTCAGGAACTTTAAAAGGCA-GTCTTTATTTC---AATTA-ATGGTAATG
gi|10                         :                                                                                                                                                                                                                                                                                                      ACCAA-TAATTAT-TT-TCA--TTTCAAA-ACAATGT--TTTT--GGC-CTT-TT-CA--ATAAGCACAGCTGTT-GCTAAGTT-AAACCTCCCATTTGTTAC-ATTTC-ATCATAACACCT-GAATAGCAATATT-TTGG-TA-CAA-CTTAT-ATTGTATTGTCAT-TAATAGTA---AATTTATTCCCTTGAGGTGTGC-CATT-TGAGtctgagttcaaagaaaatgattatgttgcagtattatctttcaaaacatgaatttatcttattatactgcctatgaaaaattgttgtgatgtgttgatcatgcctttgttaaggttttgtaaaaaattgggatagaattccacaggatgaacatcaaatgagaatgaaatttgtccggtattaggttttgatctaatttgttatcaaacaattcgccagaataattttggattttttttcaacgtatgactgtataaggtcattgcaaaattgtaatttctgtagttttgttcttcaaatttacatagtccttctgtaatttggctttggaatgtaatagaacattttcctgattctcacataataaaatggatgcttgttgacaagctttttcatagttttttaaacttgtaatttgcgtagatccgagacacgatgtgagaaccacatttttttccttattctattttaatttatgtgccttggccctctcttaataaatttgggccgacattttttggcacattacacactagtattgagctgaaggcttttgaaaatggagtcactaatcccgaacaaattcacccttcatgaaattctgcaaatttaattttggatagattactgtgagatattcttgtgtaagattctattgcatcttgtccacaaaaacttccggataatggtattttaaaattatatgttttattggagcttggttctgaagcaaaaattatcaa
gi|11                         :     GGCA-GTCTATTAAGTTCT--------GCTA-G-AC-AAC-C-AGCA-T-TGGA-T-GTTTT-CCA-GT-G-CAC-TTC-AGGGATATCC-T-TAATAAA------------------------TTTTC-T--GTGTTTG-AAA---CATC--TTTAAA-TGAGAGATTCAC-T--CCCAAT--ATTGC-ACTACAATAA--A---AAAG-AACTGG-AAGTA-gccat
gi|13                         :    tGGCA-GTCTATTGAGTTCT--------GCTA-G-AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCG-AGGATTT-CTT-TAATAAA-----TTT--GAAG---TGAATTTTTTTT-T--ATGTTTG-AAA---CATC--TTTGGA-TGAGAGATCCcatta
gi|14                         :        tAGTCTATTAAGTTCT--------GCTA-G-AC-AAC-C-AGAA-T-TGGA-T-GTTCT-GTG-GT-G-CAC-TCCG-AGGATTT--TTATAATAAA-----TTT--TAAG---TGAA-TTTTTTC-TAAATATATGAAA-----ATCC-TTT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTCCT--AGGTTTGAGGTAAT-T-G-AT---ATACCTCTATAGTT-GTC-AGGGTCAAGCC--TATTACCAAATTT--ATAC---AGCAA-TACT-AAAT-AACTT----TCTT---TCCA-ACTTCTTGGGAAT-TCACCAGAA--TTGcataaatttac
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATTT-CT-GGAC--------A--GCGTC--AACTG-CTTT--CCTA-AGATCA--AT-GAAAACTGCAT-ATACTTTTTT--TTTGTTTTTGTAAT-GGTCAATT-A-T--TGTT
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AA-G-GCTGTTTT-GTAAA-CCACTTTCGC-TTT-CAGAAA--A--GATTA--CAAT-TACCTGAGATCAGC--AT-AC-AAC-AGACAA-TTTACAT-GAACA
gi|18                         :           TCTATTAAGTTCT--------GCTA-G-AC-A----------T-T-------TTTT-GCA-AT-G-CAC-TCCG-AGGATATCTTT---ATAAA-----TTT--
gi|19                         :                                                                                                                                                                                                                                                                                                    gtatCAA-TAATTCT-TT-TCA--TTTT-AA-AACATGT--TTTTCTGGC--TT-TTTCA--ATAA
gi|2                          :     GGCA-GTCTATTGAGTTCC--------GCTAAG-ACGAAC-C-AGCA-TCTGGA-T-GTTTT-GCATGT-GGCAC-T---GAGGATT--CTT-TA-TAAA-----TTT--GAAG---TGAA---TTTTCAT--ATGTTTGAAAA---C-TCT-TTTGGAATGAGAGATCCAC-CC-C---ATA--TTTCA-CTACA-TAA--A--GAAGGA--CCGG-TAGTACATATTAA---ACATCAAAAAGTTTTCTTCATAAAAGTTTA-CATG-ATT--A----T---CC-ATAC--A--AATTGT-TT-TCAACTTTTCTA-AACATGC--TTTTCTGGC-TTT-TTTCA--ATAAGCAC-GCTGTTTGCTAAGTTTAA-CCTTCCATT----GC-ATTTC-AACATAA-ACCT-AA-TA-CAATATT-TTGGCTAGCAAATTTGT-ATTATATTGC-------TAGCATTGAATTCATTCC--TGAG--TTGC-CATT--GAGTTAAATA----AAAACTCTTGG--TTTATTAACATTGACCTGCA--G-TTTCCAGTTATT--GAG-CAGT--ATTTGCT-GA-AATATCAA-GAGCTGTCTTTGTAAA-CCACTTTTGCCTTT-CAG--ACAA--GATTA--CAATAT--C----ATCAA--------TAACA-GAC--GTTTACA-AGAACAT-TGTTTACTTGT-AC-AGGATCACA--TTTCCA-TTTTTC-AAGTCAATTGACA-ACACA---C-AAT-AAATATATTAGA-A----GAGTATGGGGACTT-AAAACAT-CC---CCT-TGTTTTGACACCA-CATTCAG-AAT-TGAGATA-CATCACTTAA----AGCATTCAG-AAA--TTTTATTCTTACTCG-TT--GTC--TACTAATACATGGA-AAATAG-A-ATATTAAAACAGTTTTT-G--GGAATAATTACATT-----AAGGAGATTT---TATAAAACTAAA---ACCAATCT-CCAGGAC--------A--GTGTC--CAATG-CTTT--CCTATATGTCAA-ATAGAAGGCCGCAT-A-AC---TTTAATTTGTTTTTGTAAT-GGTCAATTAA-T--TGTTTTTGATA--GA---GAAT--------AAG-TG---GTCTTGAATG-TCCATC-AC----A-GTTTCTTTGAAACCC-AATTTGGTTGTTCA-CTTA--TTCAATGACATT-AGA-GTATT-------ACAA-ATTTCAAGTGGTC-TGTAATGAGATTATTCTATTGTAAAGTCTTTCTA-AG-TTTGAGATAATGT-GAAT---ATA-CTCTGTAGTTAGTGTAGAGTCAAGCCTATATTACCAGA-TT--ATTC-ACACCAATTACTAAATC-AAC-T----GTTCATATCCA-ACTTCTTGGGAATAACACCAAGA--TTG-AG---ATAAG---ATGAACAATGTTTTC-CA-AAGGTTTC-AACATTACATATCC
gi|20                         :                                                                                                                                                                                                                                                CATCAAAAAGTTTTTC--A-AAAAGTT-AACGTGGATT--A----T---CA-ATACCA
gi|21                         :         AGTCTATTAAGCTCT--------GCTA-G-AC-AAC-C-AGCA-T-TGGG-T-GTTTT-
gi|22                         :                                                                                                                                                                            cCCAC-TG-CCCA-TA--TTTCA-CTACAATAA----AGAA--GAACTGG-
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            TTAC-CATGGTGAATTT-TTAGAATAAGAATTTAGA--TTT-TCAACAT-GACCTGTGTTAATTTCCAATT--TTTGAA-CAGA--ATTTTTTCAAGGATATCAA-A--CAATTCTGGTAGGTCCAGTCTTAC-TTTTCTG--G--A--CAATAAACAATAT--C----ATCAGC--ATTAC-AATAAG-CA-GTTCACAGAGA-TAT-CACCAATTTGG-AC-AGGATCACA--ATTACC-TCTACT-GAGTC--TCAACATGT-CGTATT-AAT-AAA-ATATT--G-AAGGAGAG-ATTGGG--CT-AAGATATGCCTTTCCTCTG-TT-AACACCAGCAT-CTG-ACTATAA-AAG-CTTCACTG-AG---ACCA-TTTG-AAA--CTTTATTGTTGGTT-TTT--GTCATTTTC-ATACATTTAGAAATAAAATATATTCAAACATATACTGGTGGGTAT-GTTAGATTGTTT-TAGAAG---T---T-TAAG---AAA---A--AGTCC-CC-AAACCCTCATTTATTGTGTC--AAATG-CTTTGCCCGTTAGATCAAT-T-AAATGCTGGTT-AACC---CTT--TTTGTTTTT-TATTC-------T-A-TAATGTTTTTGATATTGACCTTAATGTTGTGGAAAG-TGGCTGT-TTG-ATG-TTC--T-ACTCTTT-TTTTTTTTTATAGCC-AATTTGAT--TTCATCGTGA-TTAAATT-TA-A-AGATGC-TTCACTCTAACAATA-ATCAAGTAACCTTTGAATGA-ATTATTCTGTTAAAATGT-TTCCTCAAG-TTTGAGTTGAT-TGG-ACCGAATACCTCTGTAATT-A-CAAGGAATAG-----TGTTACCAGTTTTTGTTGT-A-AAAAG-TACC--AATGAACTCTCGATTCCAT-TACA-GATTGTCCTGAAT------------TTAAAA---ACAAGACTTTGAACAAT-TTTTTGTA-GATGGTTC-AGCA--GTATATCCCTCCAATTTTTCTTTATA-CA-TTCATTTGA----AAATTTAGGGTCTAATG----GATGTGCTTTTACA----TTTTGAG--AT-TTT--ATGCATTTTTTTATTTCTTGAATTGTATGGTGGTG
gi|4                          :         AGTCT-TTA-GCTCT--------GT--AG-AC-AAC-C-AGCA-T-TGGG-T-GTTTT-GCA-GT-G-CACCTCCCGAGGATAT--TT-TAATAAA-----TTT---AAG---TGAA-ATTTTTC-T--ATGTTTGAAA-------CTCTTTGGC-TGAGAGAACCAC-GC-CC--ATA--TTTCA-CTACAATAA--G----AAGAA-CTGGGTAGTA--CAATAG----CATCAAAAAGTCTTT-TAT-AAAAGTTTA-CATGGATT--A----T---CA-ATAC---------------TCA--TGCT--------TGC--TTTTCTG-C-CTT-TTTAA--ATTAAC----CTCCC-AATAGG---AA---TCCCATT----AC-ATTTC-T-CATAACACCT-AATAAACAGTATT-TTTG-TA-CAA-TTGTT-ATTATATTGCCATCTAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-T-AGTTTATTATACCAAAACT-TTGA--TTTAT--ACATTGAC-TGCA--GTCTTCCCGTT--T--GAA-CAAT--ATTTGCT-AAGAAT--CAAAG-GCTGTTGTTGTAAA-CCACTTTCGC-TTT-CAG--A--AAAGATTA--CAAT-TACCTGAGATCAG---AT-AC--A-AAGACAATTTTACAT-GAACAT-TGTTTACTTGT-AC-AGGTTCACA--TTTACATTTTTTC-AAGTC-ATTTACA-ATACG-ATC-AAT--AATATATT--GAA----GAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAG-AAT-GTA-ATA-CATCACTT-ATCATACCA-TCAGAAAA--TTTGATCG-TACTCATTTAAGTC-TTGCT-ATA-ATGGA-AAATAGAA-ATATT-AAACAATTTTT----GGAAT-ATTAGATT---CAAAGGAG---TTTATATAAA---AAAAATAATAATTT-CT-GGAC--------A--GCGTC--AAATG-CTTT---CTA-AGCTC-ATAT-GAAA--CGCATGATAC---TTT--TTTG-TTTTGTAAATGGTC-ATT-A-T--TGTTTTAGATA--GA---GAAT--------ACG-TGT-CGT-T----TG-TCC--T-AC----A--TTTTTTTGAAACC---ATTTTGATATTCA-CTTT--ATCAATGACA-T-AGA-GT-TT-------ACAcagtatcattctccctgggttgttttagaacatgaaattgttagaatggatctgttgaaaatcattttgaatagattttccagttgattgagtgttattgaaaaactgaatataaaat
gi|6                          : tgacGGCA-GTC-ATTGA-TTCT--------GCTAGGGAC-AACGC-AGCA-T-TGGA-TTGTTTT-GCA-GTTG-CAC-TCCGA-GGATTTTCTT--AATAAAGGGGGTTT--GAAGGTGTGAA-AATTTTC-T--ATGTTTGAAAAGAACATCT-TATGGA-TGAGAGATCCACATC-------A-ATC---ACTACAATAA--A---GAAGAA-CTGG-TAGTT-ACA----GATACAT-AAAAAGTTTTTCTTA-AAA-GTTTAGTCTGGATTGGA----TGGGCGCATACCAAATAATTCT-TT-TCT--TTTAAAA-AACTGGC--TTTTCTGGC-TTT-TTTCA--AAGTGCACAGCGGTT-GCTAAGTT-
gi|8                          :                                    gt-AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGA-GGATATCTTT-TA-TGAT-----TTTTTAAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CACCT-TT-GGA-TAAGAGATTCAC-TC-CCCTCTATATTTCT-CTACAATAAGAATTGAAAG----TG--CAATA-GCA-TA-GA-A-AT---AAA----TTCTAA-AA--GTTTA-CATGGATT--AATTAT---CA-ATACCAA-TAATTCT-TT-TCA--TTTT-GA-AACATGC--CTCCCTGGCTTTT-TTTCAATATAAGCACAGCTGTT-GCT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ctattTAAT-T-G-AT---ATACCTCTGTAGTT-GTT--AGGTCAAACC--TATTACCAGATTT--ATAT---AGCAA-TACT-AAAT-A----------------------TTCTTGGGAAT-TCACCAGAA--TTAAGT---TAAAG---TTGAACAAT-TTTTC-CA-CAGGTTTC------------TTCC----ATTTTTC----AA-CATTTAATTTGATATCATATCCATGG---AAGAACTTAA----CTCTT-C-CCATTTTTCAGGAAC-TTGAA

Unaligned ( gi|5 ): ATCACAGGGAGATTGGTAGGGTGGTTCACACATTATTTGCATGTCTTATCTATTGTTGTAACATCTTTTCAAAATTGTTTTGGACTGGTATCTATGTTTATGTTTTGATTTCATTACAAATTTTTTTGTTTGTATGATTTTTTCTTCCTGCCTTACAAAGCCTTCTGTATTTAGATATATACTTGTAAAAGAGTTGTCTGTATTTGGCCATTTAAAGGTGCTTTGGTTGTGATCAACTTTTCATATTTCTTACTGTATTCCGAAGGTCAGTACACGACTCCGAAAACCAATGGTTTCTTATTGCATTGTCGAGATTTTGTGTTTAGGTGTTCTTAGCTAACATATTTAGCCTGAAGTTTTTGCCACAACAATCTTGTATAGGTAGTGCTAAATGAACCTTAACACTAGTGTCAGTGTCTGTGTAATCTAGTTTCAATAAATTCTGAAAATGTAGCCTATGTTGGCTCTTGTGTTTTTTTAGAATACAATTCTATTGAATCTTTACTCCAAATAAATTTACCTGGTTAGGGGTTTAATTTGTTTACTCTAACTTTATTTTCTTGCTCGAGACAAAGATTGTAAA
Unaligned ( gi|7 ): TCAGGGGGAAGATTGGGGTAGGGGTGGCACACATATTTTGCCATGTTATCTAATTTGTGTAACATCTTCCAAAATGATTTTGGGACTGGTATCTATAGTTTTTGCTTGATTTTCATTAAAATTTTGTGTTAATGATCTTTCCTGCCTGCTTTACGAAAGCCTTCTGTATTTAAGGTGATTTGTTAACTTTATACTTGTAAAACAAGAGTTGTCGTATTGGGCCCATTAAAGGTTGGTTGGTCATTGATTGCTGTTACTGTATTCCGAAGGTTAAT
Unaligned ( gi|12 ): GATTTTTTTTTTTTTTTTTTTTTTTACTTCATATGGTAAGGACCTAAATATTTCTCTCCAACATTTGTTTTAAACACGAAATTGTTTAGCAATGGTTTTGTGAAGATCATTTTGAATGTTATTACGGAATTGAGCGTTTTAAAGAACTGATAAAA
Unaligned ( gi|23 ): GAGATATCACCAATTTGGACAGGATCACAATC

lowQualScore                  :         1              11111111                                                     111      1           11111   111          111                   1111    11                   3333333333333333333          111  111            11  3333333                              1        11111111111                               1111                                                      1  11      2222     1     3            11          1    1  1   1      1         1111        111                                       2222      1    11     11    1       22222         11111    1    11      1                                               11111111     11    444444444     333333333        111      11      11           1  1        11      1        1   11         1 11     1    11     333333           1   1       1  111   1  11         1         111   1    1       333333    1    1   11                  11   11    1         1        1     2           222      1      111  11      2222222    11                   11    222222     11          11    2     1111                  111   11                                       11  111    44444444444444444  11111   1   1111  222222              11               11   11          111   1  1  3333333    111                   11                  1     22  1                  111              111111           11             11    1111         1       111111111    1111                    11  11  2222222   111         1     1  11       111111111         11       3333333                          44444444444444444      11  1           1          11          222     1         
lowQualScore                  :         5       2      66666666    8 55  4   4 4    4 4    4 4     4   4  4 8   4   555    1 1   66 1    11111   000   888    111     5 66       3  2222 0  00      5            4444444444444444444          444  000 1    5     00  4444444    6           333 6   3     8        77777777777 88    2  77    0 5  5   77    5555        77        88    5   77        3      6      0 6  22      1111     0     0     2      99  7       0    0  9   0   0  0  1      0000        777          33    2     8    88     555  5555      0    33   3 00    5   8   44444         88888    0    33      0  2   3    999        5     8          8   8   88888888     11    888888888     555555555  444 0 111      66  0   22           0  0        33   1  0      2 0   33 22  3   0 99     0 3  33     999999    3      9   0       0  777 2 0  33         0  3      111 0 0    0       666666 1  0    0   33   1   77     99  33   33 1  0   2     0      3 0     0     0     888      0      777  66      6666666 3  33       0        8  11    333333     11     8    11  0 0     2222 8   44      8 6  444   11    0      8 0 8    6 0 8 8       1    33  777    88888888888888888  44444   0   8888  888888    6       1 22        33     33   33  1    3  777   0  0  2222222    777           7       44                  2     33  0      0    8 8 8  444              777777    0      11  0       0  11    7777    8    0  6    555555555    4444          99        99  22  0000000   777         0     0  00       444444444      6  88       4444444  7         7             44444444444444444  6   44  3       6   3  88  1   66          111     5         
lowQualScore                  :         .       .      ........    . ..  .   . .    . .    . .     .   .  . .   .   ...    . .   .. .    .....   ...   ...    ...     . ..       .  .... .  ..      .            ...................          ...  ... .    .     ..  .......    .           ... .   .     .        ........... ..    .  ..    . .  .   ..    ....        ..        ..    .   ..        .      .      . .  ..      ....     .     .     .      ..  .       .    .  .   .   .  .  .      ....        ...          ..    .     .    ..     ...  ....      .    ..   . ..    .   .   .....         .....    .    ..      .  .   .    ...        .     .          .   .   ........     ..    .........     .........  ... . ...      ..  .   ..           .  .        ..   .  .      . .   .. ..  .   . ..     . .  ..     ......    .      .   .       .  ... . .  ..         .  .      ... . .    .       ...... .  .    .   ..   .   ..     ..  ..   .. .  .   .     .      . .     .     .     ...      .      ...  ..      ....... .  ..       .        .  ..    ......     ..     .    ..  . .     .... .   ..      . .  ...   ..    .      . . .    . . . .       .    ..  ...    .................  .....   .   ....  ......    .       . ..        ..     ..   ..  .    .  ...   .  .  .......    ...           .       ..                  .     ..  .      .    . . .  ...              ......    .      ..  .       .  ..    ....    .    .  .    .........    ....          ..        ..  ..  .......   ...         .     .  ..       .........      .  ..       .......  .         .             .................  .   ..  .       .   .  ..  .   ..          ...     .         
lowQualScore                  :         5       7      11111111    9 55  0   0 0    0 0    0 0     0   4  4 9   4   333    0 2   33 9    11111   666   888    999     0 99       2  0000 1  11      7            1111111111111111111          444  333 4    7     55  6666666    7           555 7   2     0        00000000000 22    5  11    7 7  7   99    9999        99        00    7   99        2      7      8 0  55      2222     0     0     5      88  0       0    0  0   0   2  0  2      5555        555          22    5     0    88     222  5555      8    88   2 00    5   8   55555         55555    0    88      0  5   2    222        6     0          0   0   00000000     00    222222222     000000000  888 8 444      22  8   00           0  0        88   0  0      0 0   22 22  2   0 22     0 2  22     000000    2      0   0       0  555 5 0  22         0  2      000 2 0    0       000000 0  0    0   88   0   22     88  88   22 2  0   5     0      2 0     0     2     888      0      555  55      0000000 2  88       2        0  22    000000     00     0    00  6 4     8888 0   66      0 0  000   00    8      0 6 0    0 8 0 0       0    88  555    00000000000000000  22222   0   5555  888888    5       0 55        55     88   88  0    2  555   0  0  5555555    777           3       00                  0     88  0      2    0 0 0  000              666666    8      00  8       8  00    6666    0    6  0    888888888    2222          00        00  44  8888888   555         0     0  88       222222222      7  33       7777777  3         3             77777777777777777  7   00  3       7   3  33  0   55          000     5         
consensus                     :     GGCAAGTCTATTGAGTTCT--------GCTA-G--AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGAAGGATNTCCTT-TAATAAA-----TTT--GAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TC-CCCAATA-ATTTCAACTACAATAAA--GAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTAACATGGATT--A----T---CA-ATACCAA-TAATTCT-TT-TCA--TTTTAAA-AACATGCT--TTTCTGGC-TTTTT-TCA--ATAAGCACAGCTGTT-GCTAAGTT-AA-CCTCCCA----TTGCA-TTTCAACATAACACCTAAA-TAACAGTATT-TTGG-TAGCAA-TTTGTA-TTATATTGCCAT-TAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-TGAGTTNANTATACNAAAACTNTTGG--TTTATCAACATTGACCTGCG--GNTTTCCAGTT--T--GAGC-AGTA--TTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCACTTTCGC-TTT-CAG--A--A--GATTA--CAATATACCTGAGATCAGC--AT-ACTAACAAGACAAGTTTACATAGAACAT-CGTTTACTTGTA-CA-GGATCACA--TTTNCA-TTTTTCGA-GTC-ATCGACAATA-CGCATCAA-TAAA-TATATTGG--G-AGAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAGAA-T-TGA-ATAC-ATCACTT-A----ANCA-TCAG-AAA--TTTNATTGTTACTCGTTT--GTC-TTACT-ATACATGGA-AAATAGAA-ATATT-AAACAGTTTTTG--GGGAAT-ATTAGA---TTC-AAGGAG---T---TATA--AAAAAGACACCAATCT-CC-GGACA------GCGTC--AAATG-CTTT--CCTATAGATCAATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGT-AAT-GGTCAATT-A-TTGTTTTNGATA--GA---GAAT--------AAG-TG--CGT-TTG-ATG-TCC--T-AC----A-TTTTCTTTGAAANCC-AATTTGGTTGTTCAC--TTA--TTNAATGACA-T-AGA-GT-TT-------ACAA-A-TTCAAGTAGTCTTGTAATGAGATTATTCTATTGAAAAGTCTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCTCTGTAGTT-GT-T-AGGGTCAAGCC--TATTACCAGATTT--ATAC-A-AGCAA-TACTAAAATAACTTTTTCATATCCA-ACTTCTTGGGAAT-TCACCAGAA--TTGAAA---AT--AAG---TTGAACAAT-TTTTC-CA-AAGGTTTC-AACATTGCATATCC-CC--ATTTTTC---AAA-CATTTCATTTGATATCATATCCATGG---AANG----GA----CTCTTCACCA-TTTTCAGGAAC-TTNAAANGCATNTCTTTATTTCTTGAATTGTATGGTGGTG
Reference ( family-2979 )     :     GGCAAGTCTATTGAGTTCT--------GCTA-G--AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGAAGGATNTCCTT-TAATAAA-----TTT--GAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TC-CCCAATA-ATTTCAACTACAATAAA--GAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTAACATGGATT--A----T---CA-ATACCAA-TAATTCT-TT-TCA--TTTTAAA-AACATGCT--TTTCTGGC-TTTTT-TCA--ATAAGCACAGCTGTT-GCTAAGTT-AA-CCTCCCA----TTGCA-TTTCA-CATAACACCTAAA-TAACAGTATT-TTGG-TAGCAA-TTTGTA-TTATATTGCCAT-TAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-TGAGTTNANTATACNAAAACTNTTGG--TTTATCAACATTGACCTGCG--GNTTTCCAGTT--T--GAGC-AGTA--TTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCACTTTCGC-TTT-CAG--A--A--GATTA--CAATATACCTGAGATCAGC--AT-ACTAACAAGACAAGTTTACATAGAACAT-CGTTTACTTGTA-CA-GGATCACA--TTTNCA-TTTTTCGA-GTC-ATCGACAATA-CGCATCAA-TAAA-TATATT----G-AGAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAGAA-T-TGA-ATAC-ATCACTT-A----ANCA-TCAG-AAA--TTTNATTGTTACTCGTTT--GTC-TTACT-ATACATGGA-AAATAGAA-ATATT-AAACAGTTTTTG--GGGAAT-ATTAGA---TTC-AAGGAG---T---TATA--AAAAAGACACCAATCT-CC-GGACA------GCGTC--AAATG-CTTT--CCTATAGATCAATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGT-AAT-GGTCAATT-A-TTGTTTTNGATA--GA---GAAT--------AAG-TG--CGT-TTG-ATG-TCC--T-AC----A-TTTTCTTTGAAANCC-AATTTGGTTGTTCAC--TTA--TTNAATGACA-T-AGA-GT-TT-------ACAA-A-TTCAAGTAGTCTTGTAATGAGATTATTCTATTGAAAAGTCTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCTCTGTAGTT-GT-C-AGGGTCAAGCC--TATTACCAGATTT--ATAC-A-AGCAA-TACTAAAATAACTTTTTCATATCCA-ACTTCTTGGGAAT-NCACCAGAA--TTGAAA---AT--AAG---TTGAACAAT-TTTTC-CA-AAGGTTTC-AACATTGCATATCCCCC--ATTTTTC---AAA-CATTTCATTTGATATCATATCCATGG---AANG----GA----CTCTTCACCA-TTTTCAGGAAC-TTNAAANGCATNTCTTTATTTCTTGAATTGTATGGTGGTG
gi|1                          :     GGCAAGTCTATTGAGTTCTAGAATACTGCTAAG--AC-AAC-CTAGCAAT-TGGAAT-GTTTTTGCA-GT-GGCAC-TCCGAAGGATTTCCTT-TAATAAA-----TTT--GAGG---CGAA-ATTTTTC-T--ATGTTTGAAAA---CATCT-TTTGGA-TGAGAGATCCAC-TCACCCAATA-ATTTCAACTA-AATAAATAGAAAGAAACTGG-TAGTA-ACAATAAGA-ACATCAAAAAGTTTTTCTAA-AAAAGTTTTACATGGATT--A----T---CC-ATACCAA-TAAGTCTATTGTCA--TTTTAAAGAACATGCTATTTTCTGGC-TTTATATCA--ATAAGCACAGCTGTT-GCTAAGTT-AAACCTTCCA----TTGCAATTTCAACATAACACCTAAAATAACAGTATTGTTGG-TAACAA-TTTGTAATTTTATTGCTAT-TAATTGTA---AATTCATTTCCCTGAGGTTTGCACATT-TGAGTTAAATAT-CAAAAACTATTGGAAGTTATCTACAT-GACATGCA--AGTTTCCAGTT--T--GAGCCAGTAAATTTGCT-GAGAATATCAA-G-GCTGTTTTTGTAAA-CCATGTTTGC-TTT-CAG--A--A--GATTA--CAATATTC-----ATCAGCCAAT-ATTAACAAGACAAGTTTACATAGAACATATGTTTACTTGTAACAAGGATTCCAATTTTCCA-TTTTTCAAAGTC-ATTGACAATA-CCCATCAAATAAAATATATT----G-AGAGTATGGGG-CTTGAAAACAT-CC---C-T-TG-TTTGACACCA-CATTCAGAAAT-TGA-ATACCATCACTT-G----AACA-TCAG-AAAATTTTAATTACTACTCGTTT--GTC-TTACT-ATACATGGA-AAATAGAA-ATATT-AAACAGTTTTTG--GGAAAT-ATTAGA---TTC-AAGGAG---T---TATA--AATAAGACACCAATCTACC-AGACA------GTGTCAAAAATGACTTT--CCGA-AGATCCATAT-GAAGGCCGCAT-ATAC---TTT--TTTGTTTTTGT-ACTGGGTGAATT-ATTTGTTTTGCATA--GA---GAAT--------AAGATG---GT-CTG-ATGATCC--TAAC----AGTTTTCTTTGAAAACCAAATTTGGTTGTTCAC--TTACTTTAAGTGACA-TAAGA-GT-TT-------ACAA-A-TTCAAGTAGTCTAGTAATG-GATTATTCTATTGAAAAGTTTTCCT--AG-TTTGAGGTAAT-T-G-AT---ATACCT-TGTAGTT-GT-TGAGGGTCAAGCC--TA-TACCAGATTT--ATACGA-AGCAA-TACTAAAATAACTTTTTCATATCCACACTTCTTGGGAAT-ACA-CAGAAAGTTGAAAGGTAT--AAG---TTGAACAAT-TTTTC-CAGAAGGTTTCAAACATTGCATATCCGCC--ATTTTTC---AAAGCATTTCATTTGATATCATATCCATGG---AAAG----GA----CTCTTCACCA-TTTTCAGGAACTTTAAAAGGCA-GTCTTTATTTC---AATTA-ATGGTAATG
gi|10                         :                                                                                                                                                                                                                                                                                                     ACCAA-TAATTAT-TT-TCA--TTTCAAA-ACAATGTT--TTT--GGC-CTTTT--CA--ATAAGCACAGCTGTT-GCTAAGTTAAA-CCTCCCATTTGTTACA-TTTCATCATAACACCTGAA-TAGCAATATT-TTGG-TA-CAA-CTTATA-TTGTATTGTCAT-TAATAGTA---AATTTATTCCCTTGAGGTGTGC-CATT-TGAGtctgagttcaaagaaaatgattatgttgcagtattatctttcaaaacatgaatttatcttattatactgcctatgaaaaattgttgtgatgtgttgatcatgcctttgttaaggttttgtaaaaaattgggatagaattccacaggatgaacatcaaatgagaatgaaatttgtccggtattaggttttgatctaatttgttatcaaacaattcgccagaataattttggattttttttcaacgtatgactgtataaggtcattgcaaaattgtaatttctgtagttttgttcttcaaatttacatagtccttctgtaatttggctttggaatgtaatagaacattttcctgattctcacataataaaatggatgcttgttgacaagctttttcatagttttttaaacttgtaatttgcgtagatccgagacacgatgtgagaaccacatttttttccttattctattttaatttatgtgccttggccctctcttaataaatttgggccgacattttttggcacattacacactagtattgagctgaaggcttttgaaaatggagtcactaatcccgaacaaattcacccttcatgaaattctgcaaatttaattttggatagattactgtgagatattcttgtgtaagattctattgcatcttgtccacaaaaacttccggataatggtattttaaaattatatgttttattggagcttggttctgaagcaaaaattatcaa
gi|11                         :     GGCA-GTCTATTAAGTTCT--------GCTA-G--AC-AAC-C-AGCA-T-TGGA-T-GTTTT-CCA-GT-G-CAC-TTC-AGGGATATCC-T-TAATAAA------------------------TTTTC-T--GTGTTTG-AAA---CATC--TTTAAA-TGAGAGATTCAC-T--CCCAAT--ATTGC-ACTACAATAAA---AAAG-AACTGG-AAGTA-gccat
gi|13                         :    tGGCA-GTCTATTGAGTTCT--------GCTA-G--AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCG-AGGATTT-CTT-TAATAAA-----TTT--GAAG---TGAATTTTTTTT-T--ATGTTTG-AAA---CATC--TTTGGA-TGAGAGATCCcatta
gi|14                         :        tAGTCTATTAAGTTCT--------GCTA-G--AC-AAC-C-AGAA-T-TGGA-T-GTTCT-GTG-GT-G-CAC-TCCG-AGGATTT--TTATAATAAA-----TTT--TAAG---TGAA-TTTTTTC-TAAATATATGAAA-----ATCC-TTT
gi|15                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TTCCT--AGGTTTGAGGTAAT-T-G-AT---ATACCTCTATAGTT-GT-C-AGGGTCAAGCC--TATTACCAAATTT--ATAC---AGCAA-TACT-AAATAACTTTCTT---TCCA-ACTTCTTGGGAAT-TCACCAGAA--TTGcataaatttac
gi|16                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ATTT-CT-GGACA------GCGTC--AACTG-CTTT--CCTA-AGATCA--AT-GAAAACTGCAT-ATACTTTTTT--TTTGTTTTTGT-AAT-GGTCAATT-A-TTGTT
gi|17                         :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 AA-G-GCTGTTTT-GTAAA-CCACTTTCGC-TTT-CAGAAA--A--GATTA--CAAT-TACCTGAGATCAGC--AT-AC-AAC-AGACAA-TTTACAT-GAACA
gi|18                         :           TCTATTAAGTTCT--------GCTA-G--AC-A----------T-T-------TTTT-GCA-AT-G-CAC-TCCG-AGGATATCTTT---ATAAA-----TTT--
gi|19                         :                                                                                                                                                                                                                                                                                                   gtatCAA-TAATTCT-TT-TCA--TTTT-AA-AACATGTT--TTTCTGGC--TTTT-TCA--ATAA
gi|2                          :     GGCA-GTCTATTGAGTTCC--------GCTAAG--ACGAAC-C-AGCA-TCTGGA-T-GTTTT-GCATGT-GGCAC-T---GAGGATT--CTT-TA-TAAA-----TTT--GAAG---TGAA---TTTTCAT--ATGTTTGAAAA---C-TCT-TTTGGAATGAGAGATCCAC-CC-C---ATA--TTTCA-CTACA-TAAA--GAAGGA--CCGG-TAGTACATATTAA---ACATCAAAAAGTTTTCTTCATAAAAGTTTA-CATG-ATT--A----T---CC-ATAC--A--AATTGT-TT-TCAACTTTTCTA-AACATGCT--TTTCTGGC-TTTTT-TCA--ATAAGCAC-GCTGTTTGCTAAGTTTAA-CCTTCCA----TTGCA-TTTCAACATAA-ACCTAA--TA-CAATATT-TTGGCTAGCAAATTTGTA-TTATATTGC-------TAGCATTGAATTCATTCC--TGAG--TTGC-CATT--GAGTTAAATA----AAAACTCTTGG--TTTATTAACATTGACCTGCA--G-TTTCCAGTTATT--GAGC-AGTA--TTTGCT-GA-AATATCAA-GAGCTGTCTTTGTAAA-CCACTTTTGCCTTT-CAG--ACAA--GATTA--CAATAT--C----ATCAA--------TAACA-GAC--GTTTACA-AGAACAT-TGTTTACTTGTA-CA-GGATCACA--TTTCCA-TTTTTCAA-GTCAATTGACAACA-CA---CAA-TAAA-TATATTAG--A-AGAGTATGGGGACTT-AAAACAT-CC---CCT-TGTTTTGACACCA-CATTCAGAA-T-TGAGATAC-ATCACTTAA----AGCATTCAG-AAA--TTTTATTCTTACTCG-TT--GTC--TACTAATACATGGA-AAATAG-A-ATATTAAAACAGTTTTT---GGGAATAATTACA---TT--AAGGAGATTT---TATA--AAACTAAAACCAATCT-CCAGGACA------GTGTC--CAATG-CTTT--CCTATATGTCAA-ATAGAAGGCCGCAT-A-AC---TTTAATTTGTTTTTGT-AAT-GGTCAATTAA-TTGTTTTTGATA--GA---GAAT--------AAG-TG---GTCTTGAATG-TCCATC-AC----A-GTTTCTTTGAAACCC-AATTTGGTTGTTCAC--TTA--TTCAATGACATT-AGA-GTATT-------ACAA-ATTTCAAGTGGTC-TGTAATGAGATTATTCTATTGTAAAGTCTTTCTA-AG-TTTGAGATAATGT-GAAT---ATA-CTCTGTAGTTAGTGT-AGAGTCAAGCCTATATTACCAGA-TT--ATTC-ACACCAATTACTAAATCAAC-TGTTCATATCCA-ACTTCTTGGGAATAACACCAAGA--TTG-AG---AT--AAG---ATGAACAATGTTTTC-CA-AAGGTTTC-AACATTACATATCC
gi|20                         :                                                                                                                                                                                                                                               CATCAAAAAGTTTTTC--A-AAAAGTT-AACGTGGATT--A----T---CA-ATACCA
gi|21                         :         AGTCTATTAAGCTCT--------GCTA-G--AC-AAC-C-AGCA-T-TGGG-T-GTTTT-
gi|22                         :                                                                                                                                                                             cCCAC-TG-CCCA-TA--TTTCA-CTACAATAAA--GAA--GAACTGG-
gi|3                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TTAC-CATGGTGAATTT-TTAGAATAAGAATTTAGA--TTT-TCAACAT-GACCTGTGTTAATTTCCAATT--TTTGAAC-AGAA--TTTTTTCAAGGATATCAA-A--CAATTCTGGTAGGTCCAGTCTTAC-TTTTCTG--G--A--CAATAAACAATAT--C----ATCAGC--ATTAC-AATAAG-CA-GTTCACAGAGA-TAT-CACCAATTTGGA-CA-GGATCACA--ATTACC-TCTACTGA-GTC--TCAAC-ATGTCGTATTAA-TAAA--ATATTGAAGG-AGAG-ATTGGG--CT-AAGATATGCCTTTCCTCTG--TTAACACCAGCA-TCTGAC-TATAA-AAGC-TTCACTG-AG---ACCA-TTTG-AAA--CTTTATTGTTGGTT-TTT--GTCATTTTC-ATACATTTAGAAATAAAATATATTCAAACATATACTGGTGGGTAT-GTTAGATTGTTT-TAGAAG---T---T-TAAGAAAAAGTCCCCAAACC-CT----CATTTATTGTGTC--AAATG-CTTTGCCCGTTAGATCAAT-T-AAATGCTGGTT-AACC---CTT--TTTGTTTTT-----T-ATTCTA-T-A-ATGTTTTTGATATTGACCTTAATGTTGTGGAAAG-TGGCTGT-TTG-ATG-TTC--T-ACTCTTT-TTTTTTTTTATAGCC-AATTTGAT--TTCATCGTGA--TTAAATT-TA-A-AGATGC-TTCACTCTAACAATA-ATCAAGTAACCTTTGAATGA-ATTATTCTGTTAAAATGT-TTCCTCAAG-TTTGAGTTGAT-TGG-ACCGAATACCTCTGTAATT-A--C-AAGG--AATAG--TGTTACCAGTTTTTGTTGT-A-AAAAG-TACC--AATGAACTCTCGAT-TCCA------TTACAGAT-TGTCCTGAAT-TTAAAA---AC--AAGACTTTGAACAAT-TTTTTGTA-GATGGTTC-AGCA--GTATATCCCTCCAATTTTTCTTTATA-CA-TTCATTTGA----AAATTTAGGGTCTAATG----GATGTGCT-TTTA-CA-TTTTGAG--AT-TTT--ATGCATTTTTTTATTTCTTGAATTGTATGGTGGTG
gi|4                          :         AGTCT-TT-AGCTCT--------G-TA-G--AC-AAC-C-AGCA-T-TGGG-T-GTTTT-GCA-GT-G-CACCTCCCGAGGATAT--TT-TAATAAA-----TTT---AAG---TGAA-ATTTTTC-T--ATGTTTGAAA-------CTCTTTGGC-TGAGAGAACCAC-GC-CC--ATA--TTTCA-CTACAATAAG----AAGAA-CTGGGTAGTA--CAATAG----CATCAAAAAGTCTTT-TAT-AAAAGTTTA-CATGGATT--A----T---CA-ATAC---------------TCA--TGCT--------TGCT--TTTCTG-C-CTTTT-TAA--ATTAAC----CTCCC-AATAGG---AA---TCCCA----TTACA-TTTCT-CATAACACCTAAT-AAACAGTATT-TTTG-TA-CAA-TTGTTA-TTATATTGCCATCTAATAGCA---AATTCATTCCCTTGAGGTTTGC-CATT-T-AGTTTATTATACCAAAACT-TTGA--TTTAT--ACATTGAC-TGCA--GTCTTCCCGTT--T--GAAC-AATA--TTTGCT-AAGAAT--CAAAG-GCTGTTGTTGTAAA-CCACTTTCGC-TTT-CAG--A--AAAGATTA--CAAT-TACCTGAGATCAG---AT-AC--A-AAGACAATTTTACAT-GAACAT-TGTTTACTTGTA-CA-GGTTCACA--TTTACATTTTTTCAA-GTC-ATTTACAATA-CG-ATCAA-T-AA-TATATT----GAAGAGTATGGGGGCTT-AAAACAT-CC---CCT-TG-TTTGACACCA-CATTCAGAA-T-GTA-ATAC-ATCACTT-ATCATACCA-TCAGAAAA--TTTGATCG-TACTCATTTAAGTC-TTGCT-ATA-ATGGA-AAATAGAA-ATATT-AAACAATTTTT----GGAAT-ATTAGA---TTCAAAGGAG---TTTATATA--AAAAAAATAATAATTT-CT-GGACA------GCGTC--AAATG-CTTT---CTA-AGCTC-ATAT-GAAA--CGCATGATAC---TTT--TTTG-TTTTGTAAAT-GGTC-ATT-A-TTGTTTTAGATA--GA---GAAT--------ACG-TGT-CGT-T----TG-TCC--T-AC----A-TTTT-TTTGAAACC---ATTTTGATATTCAC--TTT--ATCAATGACA-T-AGA-GT-TT-------ACAcagtatcattctccctgggttgttttagaacatgaaattgttagaatggatctgttgaaaatcattttgaatagattttccagttgattgagtgttattgaaaaactgaatataaaat
gi|6                          : tgacGGCA-GTC-ATTGA-TTCT--------GCTA-GGGAC-AACGC-AGCA-T-TGGA-TTGTTTT-GCA-GTTG-CAC-TCCGA-GGATTTTCTT--AATAAAGGGGGTTT--GAAGGTGTGAA-AATTTTC-T--ATGTTTGAAAAGAACATCT-TATGGA-TGAGAGATCCACATC-------A-ATC---ACTACAATAAA--GAAG--AACTGG-TAGTT-ACA----GATACAT-AAAAAGTTTTTCTTA-AAA-GTTTAGTCTGGATTGGA----TGGGCGCATACCAAATAATTCT-TT-TCT--TTTAAAA-AACTGGCT--TTTCTGGC-TTTTT-TCA--AAGTGCACAGCGGTT-GCTAAGTT-
gi|8                          :                                    gt--AC-AAC-C-AGCA-T-TGGA-T-GTTTT-GCA-GT-G-CAC-TCCGA-GGATATCTTT-TA-TGAT-----TTTTTAAAG---TGAA-ATTTTTC-T--ATGTTTGAAAA---CACCT-TT-GGA-TAAGAGATTCAC-TC-CCCTCTATATTTCT-CTACAATAAG--AATTGAAAGTG--CAATA-GCA-TA-GA-A-AT---AAA----TTCTAA-AA--GTTTA-CATGGATT--AATTAT---CA-ATACCAA-TAATTCT-TT-TCA--TTTT-GA-AACATGCC--TCCCTGGCTTTTTT-TCAATATAAGCACAGCTGTT-GCT
gi|9                          :                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ctattTAAT-T-G-AT---ATACCTCTGTAGTT-GT-T-AGG-TCAAACC--TATTACCAGATTT--ATAT-A--GCAA-TACTAAA------------TAT-------TCTTGGGAAT-TCACCAGAA--TT--AA---GTTAAAG---TTGAACAAT-TTTTC-CA-CAGGTTTC-----TT---------CC--ATTTTTC----AA-CATTTAATTTGATATCATATCCATGG---AAGAACTTAA----CTCTTC-CCATTTTTCAGGAAC-TTGAA