lowQualScore : 1 1 1 333333333333333333333333 11111111 3333333333333 111111 111111 111111 5555555555555555 6666 11111111
lowQualScore : 2 4 1 22 55 2 2 44 1 4 1 999999999999999999999999 2 5555 2 2 666 33 2 1 99999999 1111111111111 3 0 0 777 000000 3 1 222222 222222 2 4 4444444444444444 777 3333 0 2 44 77777777 9 6 5 5 77 7 8
lowQualScore : . . . .. .. . . .. . . . ........................ . .... . . ... .. . . ........ ............. . . . ... ...... . . ...... ...... . . ................ ... .... . . .. ........ . . . . .. . .
lowQualScore : 1 0 9 66 22 6 7 55 9 6 9 555555555555555555555555 7 7777 0 7 777 77 7 0 66666666 3333333333333 6 7 4 222 888888 1 1 999999 888888 7 4 6666666666666666 888 2222 9 3 66 55555555 4 5 0 7 11 8 0
consensus : TTCTAATT-AAAAT-CA-G--AT--CTTCTCT--AA-CCGTTACACT-GGAGAAG--GATCTG---A---CA---C---TGCG-T----TTGA-GGTCATG--T-TATTTGACC----T---TTCA-CA-------TT-G-ACCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---CG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGAA----GCGCGGGAGAAT-AAT-GG-AAA-AGATGACGGCGGCC-AAGGA-CGATG-TTAGANCAT-CACAGAA
Reference ( gi|6 ) : TTCTAATT-AAAAT-CA-G--AT--CTGCTAT--AA-CCGGTACACT-GGAGAAG--CTTCTG---A---CA---C---TGCG-T----TTAA-GGCCGTG--T-TATTTGACC----T---TTCA-CAT------TT-G-ACCAATTAAATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAACATCCT---TA-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGAAACACGCGCGGGAGAAT-AAT-GG-AAA-AGATGACTGCGGCC-AAGGA-TGATG-TTAGACCAT-CACAGAAT
gi|5 : TTCTAATTTAAAAT-CA-G--AT--CTGCTAT--AAACCGGTACACTTGGAGAAG--CTTCTG---A---CA---C---TGCGTT----TTAA-GGCCGTG--T-TATTTGA-C----T---TTCA-CAT------TTGG-ACCAATT-AATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAA-ATCCTTAGTA-GTAT------TCAACGTTAC------CAA-------AAT---TACCGAGAAACA-ACGCGGGAGAAT-AAT-GG-AAA-AGATGACTGCGGCCAAAGGA-TGATG--TAGATCAT-CACAG
gi|7 : caTTCTAATT-AAAAT-CAAG--AT--CTGCTATTAAA-CCG-TACACT-GGAGAAG--CTTCTG---A---CA---C---TGCG-T----TTAAAGGCCGTG--TATATTTGAC---------TTCA-CAT------TT-GGACCAATTAA-T-ACGGCTT---CGCA-AG-ATGGAAGTTTTGTTGTTATAT-GGAA-ATCCT---TAAGTAT------TCAACG-TAC------CAA-------AAT---TACCGAGAAACACGCGC-GGAGAAT-AAT-GG-AAA-AGATGACTGCGGCA-AAGGA-TGATG-TTAGATCATGCACAGAA
gi|8 : caTCTAATT-AAAGT-CG-G--AT--CTTCTCT--AA-TCGATATACT-GGAGAAGGACGTCTG---G---CAGCAC---TGCG-T----TCAA-GGTCATG--T-TATTTGAGC----T---TTTG-CAA------AT-G-ACCAATCAAATGAGGGCTT--TCACA-AGCATGAAAGCGTTTTTGCTATATCGGAACATTCT---TA-GTATATATTGTC--CC-TACGG----CAAT------GAT---TGCCGAGAA----GTGCGGAAG---------------AGATGACGGCCGCC-AAGAA-CAATG-GTAAAACAC-CACAG
gi|14 : aaTCTAATT-AAAAT-CG-G--AT--CTTCTCG--AA-CTGTTGCACT-AGACAAG--GATCTGCCAG---CA---T---TGCG-T----TTGA-GGTCATG--T-T--TCGACC----T---TTCA-CAT------TTTG-ACCAATCAAATGACGGCTT--TCGCA-A--ATGAAAGTTTTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGAA----GTGCGGGAAA
gi|2 : aaTTTAATT-AAATT-CA-G--AT--CTTCTCT--AA-CCGTTATACT-GTAGAAG--GATCTC---ACAGCA---T---TGCG-T----TTGA-GG--ATA--T-T-TTTGTTCTT--T---TTTACCATTCTGTATT-G-ACCAATCAAATGATGGTTT--ACGCT-AACTTGAAAATGTTTTTGCT-TATCGGAACATCCT---CG-GTAT------TGAACG-TAT------GAACGGGAATAAT---TATCAAGAA------GCGGGGGAAT-AAT-CA-AAATAGATGAC---------AGGAGCGATG-TTAGA
gi|19 : aTCAAATT-TAAAT-CA-C--AT--CTTTTCT--AA-CTGTTTTACT-GGAGAAG-------G---A---T----C---TGCA-T----TTAA-GGTCATG--T-TATTTGACC----T---TTCA-CAA------TT-G-ACCAATCAAATGATGGCTT--TTGCGTAG-ATGAGAGATTTGCTGTAATATCGGAAataatacatgtgcagaacgttccctctactacatgcttgaattaaaat
gi|25 : TCTAATT-AAAAC-CA-G--AC--CTTCTCT--AA-ACGTTACTCT-GAAGAAG-------------------------GCG-A----TTGA-GGTCATGTTT-TTTTTTACC----T---TTCA-CAA------TT-G-ACCAATCAAAT
gi|10 : TCTAATG-AAAAT-CA-G--AT--CTTTTCT--AA-ACGTTACACC-GGAGATG--GATCTG---ACAGCA---T---TGCG-T----TTGA-GGTGGTG--T-TA-TTGACCACAAT---CTCA-C-----------G-AATAATTCAATAA
gi|16 : attttaaacaaaattttattttttcatggatgacgccatgtcgtacttacaatccgaatacgcttcagtaaaacgactcttgattggccattgatactgttatttttattTCTAATT-AAAAT-CA-C--AT--CTTCTCT--AA-CTGTTACCCA-GGGAAAA--AATCTA---A---CA---CCATTGCG-T----TTGA-GGTAATG--T-TATTTGACC----
gi|4 : atgtgcacttacattctaaatgcgcttcagtaaaacgatttctaattggtccttgattcctagtcaaactattgttattggttgaatatttgatgaaaaattcatgaactggTCTAATT-AAAAT-CA-G--AT--CCTCTCT--AA-CCATGACACT-GGAGA-----TTATG---T---CA-------------------GA-GGTTATG--T-TATTTGAC
gi|24 : tttacaaggtagaaaaaaaaatttgttgaaatctggatcgtacaactttttaaacagtttcaatgtttatggatcaacgcaatttctgtttaatatgtgaacttgtaatctgaatacgtttcagtaaaatgatttctaattggtccttgattctttgtcaaactattgggttttattgaattcatgagactgggaTCTAATT-AAAAT-AA-G--AT--ATTTTCT--AA-CCGTCACATT-GGAA-------TCTG---A---TA---A---AAT--T----TTGA-GGTCATG--T-TATATGACC----CCAATTCA-----------T-G-AATAATTAAGT
gi|29 : TCTAATT-AAAAT-CA-G--AT--TTTCTCT--AA-CCATTACACT-GGGGt
gi|11 : atctaattaaaatctaatttctcttaccgtgaaaTCTAATT-AAAATTCA-G--ATATCTTCTCT--AT-CCTTTACACT-GGAGAGG--AGTTTG---A---TG---T---TG
gi|9 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatTCTAATT-AAAATTCA-G--ATATCTTCTCT--AT-CCTTTACACT-GGAGAGG--AGTTTG---A---TG---T---TG
gi|33 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatTCTAATT-AAAAT-TA-G--GT--TTTCTCT--AA-CCATTACAt
gi|12 : CTAATT-AAAAT-CA-GATAT--CTTCTCT--AT-CCTTTACACT-GGAGAAG-------G---A---------------G-T----TTGA-TGTTGTA--T-GATTCGACC----t
gi|18 : tatgtatcgacgccatcattttcaaaatgagaacagccgaatacgcttcagtaaagcaatttctgattggtcctcgtctctttgtcaaaactcagtattattatcagtcgaatatctaatgaattattcatgaactggTAATT-AAAAT-CA-G--AT--CTTCTCTA-AA-CTGTTACACT-GGAGGAG--AATCTG---A---CAG--CCA-TGTG-TTTGATTGA-GGTCATG--A-TATTTGACC----TCAGTTCA-----------T-G-AATAATT
gi|28 : tgattggtctttgattctttgtcaaactattgttttggtggagtatttgatgATT-AAAAT-CA-G--AC--CTTCTCT--AA-CCATTACACT--GAGGTG--GATCTG---A-----------------T----TTGA-GGTCATG--T-TACTTTACC----
gi|31 : taattcatgaactggTT-GAAAT-TA-G--AA--CCTCTCT--AA-CCGTTACACT-GGAGAAG--
gi|15 : tgccaaatatcT-TA-G--AT--CTTCTCT--AA-TCTTTACGCT-GGAGAAG--
gi|1 : gttcaaacaattctatttcgtgaatcatacctttgggaggagggggcttacaattcttattcagtaaaacgattcctacatgtaaatggtccttgatttttttgttaaactattgttattggtcgtatacttgttgaattattcatgagactgcggtcaatcgtA-G--AT--CTTCTCC--AA-CCGTTACACT-GGGGAAG--GATCTG---A---CA---
gi|13 : ttgttgctatatcagaacatccttggtatttaacgtatgcatggcaataactaccaagaagtgcgggaaaattttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggcTACACT-GGAGAAG--GATCTG---A---CAGCAT---TGTG-T----TTGA-GGTAATG--T-TTTTTTACC----A---TTCA-----------------------AATGATGACTTAATTGC---GC-T---AATTTTG--GT-ATATCGGAACAT----------------------ATG-CAC------AGG-------AATGAATACCGAGAA----GGGCGGAAAGAT-AATGGG-AAA-AAATGATGGCAGCC-ATGAA-TGATGATAAGAC
gi|21 : nnnnnnnnnnnnnnnnnnnnnnnnnnncatCTT--TCGCT-AACATGAAAGTGTTGTCGCTATATTGGAACACCCT---CG-GTCT------TTAACG-TAC------GGG-------ATT---TGCCGAGAA----GCGTGGGAG-AT-AAC-GGTGAC-AAAT---TGC------------GATG-TTTGAACAT-GACAGAAgcc
gi|3 : TTTATT-CTATATCGGAACATCCT---CG-GTAT------TTAATG--------------------AAT---TACCGAGAA----GCGCCGGAGAAT--GT-AG---------GACGGCGGCC-AAG
gi|1 : TTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGAA----GTGCGGGAAAAT-accacagaactttccctcaactacatgtgaattataattcgtatatatagactgtcgtcgccatatttgtaatgtcaacttacaatcagtaaatgatttctgattggtccttgattctttgttaaactattgttattggttgaatattcaatgaatcattcatgaactgggatcaaacactagtaacaatgctgtcag
gi|30 : GCAGGAGATTTAAT-CA-AAAGAGATGTCAGCAGAC-AAGGG-TGATG-TTAGAGCAC-CACAAAAtttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggctgtcagatccttccccagtgtaacggttggagaagatct
7 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): GTTAGAAAAAGAATCGTCGAAATTCGGACGATACAAACGTGCATCGTCGCCATTTTTGTAAGGTCAACTTACAATCCCGAATGCGCTTCAGTAAAACGATTTCTGATTAGTCTTTGATTCTTTGTGAAACTATTGTTATTGACCGAATATCTAAAAAAATATTCATGAACTGGGGTCAAATGACATGACCTC
Unaligned ( gi|20 ): AAAAAAATGTCGAGAATTCGATGACTAATTCATGGACTCGTCGCCATTTTTGATATAACGATGCGCTTCAGTAAAATGATTGCTGACTGGTCTTTGTATTGTTATTGGTCGAATAAAAAAAA
Unaligned ( gi|22 ): AGAAAAAGAATTGTCAAATTTCAGATGATAGATTCATGGATTGAATTATGGATCGTTTCCATTTTTTCAATGTGCACTTTAACAATCCAAATGCGCTTTAGTAA
Unaligned ( gi|23 ): ATTCCTGATCGGTCCTTGATTCTTTGTCACGCTATTGTTATTGGTCAAATATCTACTGAATTATTCATGAGTGTGAGGTCAATAACAATACCTCAA
Unaligned ( gi|26 ): CAAAAACAGTGACTCAAAGCAATGCTGTCAGATACCACTTACTCCCATCTGAACGTTTGATGAGAGGATAGACTCTGATTTAATTGATAT
Unaligned ( gi|27 ): ATTGGTCCTTGATTCTTTGTTAAACTATTGCTATATATATTGGTTGAATACATGTATTTAATGAATTATTCATGAACTGGGATCAAA
Unaligned ( gi|32 ): TTCAGTGTGACATGTTGAGAAAGATCTGATTTTAATTAC
Alignments
lowQualScore : 2222222222222222 11111111 11111111 111111 111111 4444444444444444 11111111111
lowQualScore : 1 3 1 44444 66 1 22 44 1 1 1 1 1 8888888 7777777777777777 5555 2 2 4444 2 33 2 555 33333333 3 99999999 3 66 88 3 0 222222 111111 1 4 6666666666666666 777 777 8888 666 55555555555 5 4 5 3 1 5
lowQualScore : . . . ..... .. . .. .. . . . . . ....... ................ .... . . .... . .. . ... ........ . ........ . .. .. . . ...... ...... . . ................ ... ... .... ... ........... . . . . . .
lowQualScore : 8 5 7 22222 99 7 33 00 7 6 6 7 7 3333333 1111111111111111 0000 2 2 7777 2 11 2 000 44444444 3 22222222 3 11 33 9 4 000000 555555 4 0 3333333333333333 000 000 5555 444 22222222222 7 4 0 4 0 7
consensus : TTCTAATT-AAAAT-CA-GA-----T--C-TTCTC--T--AA-C-CGTT-ACACT-GGAG-AAG--G-A--TCTG---A---CA---C---TGCGT----TT-GA-GG----TCG-TG--T-TA--TTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
Reference ( family-2964 ) : TTCTAATT-AAAAT-CA-GA-----T--C-TTCTC--T--AA-C-CGTT-ACACT-GGAG-AAG--G-A--TCTG---A---CA---C---TGCGT----TT-GA-GG----TCA-TG--T-TA--TTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---CG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
gi|1 : TTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAAT-
gi|1 : A-GA-----T--C-TTCTC--C--AA-C-CGTT-ACACT-GGGG-AAG--G-A--TCTG---A---CA---tttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggctgtcagatccttccccagtgtaacggttggagaagatct
gi|10 : ttgttgctatatcagaacatccttggtatttaacgtatgcatggcaataactaccaagaagtgcgggaaaattttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggcTCTAATG-AAAAT-CA-GA-----T--C-TTTTC--T--AA-A-CGTT-ACACC-GGAG-ATG--G-A--TCTG---ACAGCA---T---TGCGT----TT-GA-GG----TGG-TG--T-TA---TTGACCACAAT---CTC-ACGA-A-T--AATTCAATAAAATAA
gi|11 : attttaaacaaaattttattttttcatggatgacgccatgtcgtacttacaatccgaatacgcttcagtaaaacgactcttgattggccattgatactgttatttTCTAATT-AAAATTCA-GA-----TATC-TTCTC--T--AT-C-CTTT-ACACT-GGAG-AGG--A-G--TTTG---A---TG---T---TG
gi|12 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatCTAATT-AAAAT-CA-GA-----TATC-TTCTC--T--AT-C-CTTT-ACACT-GGAG-AAG--G-A-------------------------GT----TT-GA-TG----TTG-TA--T-GA--TTCGACC----
gi|13 : tatgtatcgacgccatcattttcaaaatgagaacagccgaatacgcttcagtaaagcaatttctgattggtcctcgtctctttgtcaaaactcagtattattatcagtcgaatatctaatgaattattcatgaactgg-CATT-ACACT-GGAG-AAG--G-A--TCTG---A---CAGCAT---TGTGT----TT-GA-GG----TAA-TG--T-T--------------T---TT-------T-T---A-CCATTCAAATGATGACTTAATTGC---GC-T---AATTTTG--G-TATATCGGAACAT----------------------ATG-CAC------AGG-------AATGAATACCGAGA---A----GGGCG---GAAAGAT-AATGGGAAA-AAATGATGGCAGCC-ATGAA-TGATGATA
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnTCTAATT-AAAAT-CG-GA-----T--C-TTCTC--G--AA-C-TGTT-GCACT-AGAC-AAG--G-A--TCTGCCAG---CA---T---TGCGT----TT-GA-GG----TCA-TG--T-T----TCGACC----T---TTC-AC-A-T-TTTGA-CCAATCAAATGACGGCTT--TCGCA-A--ATGAAAGTTTTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAagacgcc
gi|15 : aaT-TA-GA-----T--C-TTCTC--T--AA-T-CTTT-ACGCT-GGAG-AAGACG-A--T-TG---A---C
gi|16 : gttcaaacaattctatttcgtgaatcatacctttgggaggagggggcttacaattcttattcagtaaaacgattcctacatgtaaatggtccttgatttttttgttaaactattgttattggtcgtatacttgttgaattattcatgagactgcgTCTAATT-AAAAT-CA-CA-----T--C-TTCTC--T--AA-C-TGTT-ACCCA-GGGA-AAA--A-A--TCTA---A---CA---CCATTGCGT----TT-GA-GG----TAA-TG--T-TA--TTTGACC----
gi|17 : atgtgcacttacattctaaatgcgcttcagtaaaacgatttctaattggtccttgattcctagtcaaactattgttattggttgaatatttgatgaaaaattcatgaactgg-GA-GG----TCA-TG--T-CA--TTTGACC----
gi|18 : gttagaaaaagaatcgtcgaaattcggacgatacaaacgtgcatcgtcgccatttttgtaaggtcaacttacaatcccgaatgcgcttcagtaaaacgatttctgattagtctttgattctttgtgaaactattgttattgaccgaatatctaaaaaaatattcatgaactggTAATT-AAAAT-CA-GA-----T--C-TTCTC--TA-AA-C-TGTT-ACACT-GGAG-GAG--A-A--TCTG---A---CAG--CCA-TGTGTTTGATT-GA-GG----TCA-TG--A-TA--TTTGACC----TCAGTTC-ATGA-A-T--AA-TTCATCAAAT
gi|19 : tgattggtctttgattctttgtcaaactattgttttggtggagtTCAAATT-TAAAT-CA-CA-----T--C-TTTTC--T--AA-C-TGTT-TTACT-GGAG-AAG--G-A--TCTG------------------CAT----TT-AA-GG----TCA-TG--T-TA--TTTGACC----T---TTC-AC-AAT-T--GA-CCAATCAAATGATGGCTT--TTGCGTAG-ATGAGAGATTTGCTGTAATATCGGAA
gi|2 : TTTAATT-AAATT-CA-GA-----T--C-TTCTC--T--AA-C-CGTT-ATACT-GTAG-AAG--G-A--TCTC---ACAGCA---T---TGCGT----TT-GA-GGATATTTT-TG--T-TCTTTTTTACC----A---TTCTGT-A-T-T--GA-CCAATCAAATGATGGTTT--ACGCT-AACTTGAAAATGTTTTTGCT-TATCGGAACATCCT---CG-GTAT------TGAACG-TAT------GAACGGGAATAAT---TATCAAGA---A------GCG---GGGGAAT-AAT-CAAAATAGATGAC---------AGGAGCGATGTTAGAATAA-TACA
gi|21 : aCTT--TCGCT-AACATGAAAGTGTTGTCGCTATATTGGAACACCCT---CG-GTCT------TTAACG-TAC------GGG-------ATT---TGCCGAGA---A----GCGTG---GG----------------AGATAACGGTGACA-AATTG-CGATGTTTGAACAT-GACAGAAtgtgcagaacgttccctctactacatgcttgaattaaaat
gi|24 : TCTAATT-AAAAT-AA-GA-----T--A-TTTTC--T--AA-C-CGTC-ACATT-GGA---------A--TCTG---A---TA---A---AAT-T----TT-GA-GG----TCA-TG--T-TA--TATGACC----CCAATTC-A------T--GA-ATAATTAAGT
gi|25 : TCTAATT-AAAAC-CA-GA-----C--C-TTCTC--T--AA-A-CGTT-ACTCT-GAAG-AAG----------------------------GCGA----TT-GA-GG----TCA-TGTTT-TT--TTTTACC----T---TTC-ACAA-T-T--GA-CCAATCAAATt
gi|26 : AATT-AAA-T-CA-GAGTCTAT--C-CTCTCATC--AA-A-CGTTCAGATG-GGAGTAAGTGGTA--TCTG---ACAGCA---T---TGC-T----TT-GA--G----TCACTG--T-T---TTTG
gi|28 : ATT-AAAAT-CA-GA-----C--C-TTCTC--T--AA-C-CATT-ACACT--GAG-GTG--G-A--TCTG---A----------------T----TT-GA-GG----TCA-TG--T-TA--CTTTACC----gatat
gi|29 : taattcatgaactggTCTAATT-AAAAT-CA-GA-----T--T-TTCTC--T--AA-C-CATT-ACACT-GGGG-
gi|3 : atctaattaaaatctaatttctcttaccgtgaaaTTTATT-CTATATCGGAACATCCT---CG-GTAT------TTAATG--------------------AAT---TACCGAGA---A----GCGCC---GGAGAAT--GT-AG--------GACGGCGGCC-AAG
gi|30 : GCA---GGAGATTTAAT-CAAAAGAGATGTCAGCAGAC-AAGGG-TGATGTTAGAGCAC-CACAAAAaccacagaactttccctcaactacatgtgaattataattcgtatatatagactgtcgtcgccatatttgtaatgtcaacttacaatcagtaaatgatttctgattggtccttgattctttgttaaactattgttattggttgaatattcaatgaatcattcatgaactgggatcaaacactagtaacaatgctgtcag
gi|31 : tTT-GAAAT-TA-GA-----A--C-CTCTC--T--AA-C-CGTT-ACACT-GGAG-AAG--G-A--Tctt
gi|32 : tgccaaatTAATT-AAAAT-CA-GA-----T--CTTTCTC-----AA-CATGTC-ACACT-GAA
gi|33 : TCTAATT-AAAAT-TA-GG-----T--T-TTCTC--T--AA-C-CATT-ACAc
gi|4 : TCTAATT-AAAAT-CA-GA-----T--C-CTCTC--T--AA-C-CATG-ACACT-GGAG-----------------------A---T---TATGT----CA-GA-GG----TTA-TG--T-TA--TTTGACt
gi|5 : tttacaaggtagaaaaaaaaatttgttgaaatctggatcgtacaactttttaaacagtttcaatgtttatggatcaacgcaatttctgtttaatatgtgaacttgtaatctgaatacgtttcagtaaaatgatttctaattggtccttgattctttgtcaaactattgggttttattgaattcatgagactgggaTTCTAATTTAAAAT-CA-GA-----T--C-TGCTA--T--AAAC-CGGT-ACACTTGGAG-AAG--C-T--TCTG---A---CA---C---TGCGT----TTTAA-GG----CCG-TG--T-TA--TTTGA-C----T---TTC-AC-A-T-TTGGA-CCAATT-AATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAA-ATCCTTAGTA-GTAT------TCAACGTTAC------CAA-------AAT---TACCGAGAAACA----ACGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCCAAAGGA-TGATG-TAGATCAT-CACAG
gi|6 : caTTCTAATT-AAAAT-CA-GA-----T--C-TGCTA--T--AA-C-CGGT-ACACT-GGAG-AAG--C-T--TCTG---A---CA---C---TGCGT----TT-AA-GG----CCG-TG--T-TA--TTTGACC----T---TTC-AC-A-T-TT-GA-CCAATTAAATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAACATCCT---TA-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---AACACGCGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCC-AAGGA-TGATGTTAGACCAT-CACAGAA
gi|7 : TTCTAATT-AAAAT-CAAGA-----T--C-TGCTA--TTAAA-C-CGT--ACACT-GGAG-AAG--C-T--TCTG---A---CA---C---TGCGT----TT-AAAGG----CCG-TG--TATA--TTTGAC---------TTC-AC-A-T-TTGGA-CCAATTAA-T-ACGGCTT---CGCA-AG-ATGGAAGTTTTGTTGTTATAT-GGAA-ATCCT---TAAGTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----ACACGCGCGGAGAAT-AAT-GGAAA-AGATGACTGCGGCA-AAGGA-TGATGTTAGATCATGCACAGAAt
gi|8 : caTCTAATT-AAAGT-CG-GA-----T--C-TTCTC--T--AA-T-CGAT-ATACT-GGAG-AAG--G-ACGTCTG---G---CAGCAC---TGCGT----TC-AA-GG----TCA-TG--T-TA--TTTGAGC----T---TTT-GC-A-AAT--GA-CCAATCAAATGAGGGCTT--TCACA-AGCATGAAAGCGTTTTTGCTATATCGGAACATTCT---TA-GTATATATTGTC--CC-TACGG----CAAT------GAT---TGCCGAGA---A----GTGCG---GAAG--------------AGATGACGGCCGCC-AAGAA-CAATGGTAAAACAC-CACAG
gi|9 : aaTCTAATT-AAAATTCA-GA-----TATC-TTCTC--T--AT-C-CTTT-ACACT-GGAG-AGG--A-G--TTTG---A---TG---T---TG
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAAAAAATGTCGAGAATTCGATGACTAATTCATGGACTCGTCGCCATTTTTGATATAACGATGCGCTTCAGTAAAATGATTGCTGACTGGTCTTTGTATTGTTATTGGTCGAATAAAAAAAA
Unaligned ( gi|22 ): AGAAAAAGAATTGTCAAATTTCAGATGATAGATTCATGGATTGAATTATGGATCGTTTCCATTTTTTCAATGTGCACTTTAACAATCCAAATGCGCTTTAGTAA
Unaligned ( gi|23 ): ATTCCTGATCGGTCCTTGATTCTTTGTCACGCTATTGTTATTGGTCAAATATCTACTGAATTATTCATGAGTGTGAGGTCAATAACAATACCTCAA
Unaligned ( gi|27 ): ATTGGTCCTTGATTCTTTGTTAAACTATTGCTATATATATTGGTTGAATACATGTATTTAATGAATTATTCATGAACTGGGATCAAA
Alignments
lowQualScore : 2222222222222222 11111111 11111111 111111 4444444444444444 11111111111
lowQualScore : 1 3 1 77 1 44 1 1 1 555555 6666666666666666 5555 2 2 777777 33 2 0 33333333 3 99999999 3 66 88 3 0 777777 111111 1 4 6666666666666666 777 777 8888 666 55555555555 5 4 5 3 1 5
lowQualScore : . . . .. . .. . . . ...... ................ .... . . ...... .. . . ........ . ........ . .. .. . . ...... ...... . . ................ ... ... .... ... ........... . . . . . .
lowQualScore : 9 6 7 22 7 11 7 7 7 000000 2222222222222222 3333 5 5 222222 44 5 4 88888888 3 22222222 3 11 33 9 4 888888 555555 4 0 3333333333333333 000 000 5555 444 22222222222 7 4 0 4 0 7
consensus : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
Reference ( family-2964 ) : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
gi|1 : TTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAAT-
gi|1 : A-GAT--C-TTCTCC--AA-C-CGTTACACT-GGGGAAG--GA--TCTG---A---CA---tttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggctgtcagatccttccccagtgtaacggttggagaagatct
gi|10 : ttgttgctatatcagaacatccttggtatttaacgtatgcatggcaataactaccaagaagtgcgggaaaattttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggcTCTAATG-AAAAT-CA-GAT--C-TTTTCT--AA-A-CGTTACACC-GGAGATG--GA--TCTG---ACAGCA---T---TGCGT----TT-GA-GG------TGGTG--T-TA-TTGACCACAAT---CTC-ACGA-A-T--AATTCAATAAAATAA
gi|11 : attttaaacaaaattttattttttcatggatgacgccatgtcgtacttacaatccgaatacgcttcagtaaaacgactcttgattggccattgatactgttatttTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
gi|12 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatCTAATT-AAAAT-CA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAAG--GA-------------------------GT----TT-GA-TG------TTGTA--T-GATTCGACC----
gi|13 : tatgtatcgacgccatcattttcaaaatgagaacagccgaatacgcttcagtaaagcaatttctgattggtcctcgtctctttgtcaaaactcagtattattatcagtcgaatatctaatgaattattcatgaactgg-CATTACACT-GGAGAAG--GA--TCTG---A---CAGCAT---TGTGT----TT-GA-GG------TAATG--T-T------------T---TT-------T-T---A-CCATTCAAATGATGACTTAATTGC---GC-T---AATTTTG--G-TATATCGGAACAT----------------------ATG-CAC------AGG-------AATGAATACCGAGA---A----GGGCG---GAAAGAT-AATGGGAAA-AAATGATGGCAGCC-ATGAA-TGATGATA
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnTCTAATT-AAAAT-CG-GAT--C-TTCTCG--AA-C-TGTTGCACT-AGACAAG--GA--TCTGCCAG---CA---T---TGCGT----TT-GA-GG------TCATG--T-T--TCGACC----T---TTC-AC-A-T-TTTGA-CCAATCAAATGACGGCTT--TCGCA-A--ATGAAAGTTTTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAagacgcc
gi|15 : aaT-TA-GAT--C-TTCTCT--AA-T-CTTTACGCT-GGAGAAGACGA--T-TG---A---C
gi|16 : gttcaaacaattctatttcgtgaatcatacctttgggaggagggggcttacaattcttattcagtaaaacgattcctacatgtaaatggtccttgatttttttgttaaactattgttattggtcgtatacttgttgaattattcatgagactgcgTCTAATT-AAAAT-CA-CAT--C-TTCTCT--AA-C-TGTTACCCA-GGGAAAA--AA--TCTA---A---CA---CCATTGCGT----TT-GA-GG------TAATG--T-TATTTGACC----
gi|18 : atgtgcacttacattctaaatgcgcttcagtaaaacgatttctaattggtccttgattcctagtcaaactattgttattggttgaatatttgatgaaaaattcatgaactggTAATT-AAAAT-CA-GAT--C-TTCTCTA-AA-C-TGTTACACT-GGAGGAG--AA--TCTG---A---CAG--CCA-TGTGTTTGATT-GA-GG------TCATG--A-TATTTGACC----TCAGTTC-ATGA-A-T--AA-TTCATCAAAT
gi|19 : tgattggtctttgattctttgtcaaactattgttttggtggagtTCAAATT-TAAAT-CA-CAT--C-TTTTCT--AA-C-TGTTTTACT-GGAGAAG--GA--TCTG------------------CAT----TT-AA-GG------TCATG--T-TATTTGACC----T---TTC-AC-AAT-T--GA-CCAATCAAATGATGGCTT--TTGCGTAG-ATGAGAGATTTGCTGTAATATCGGAA
gi|2 : TTTAATT-AAATT-CA-GAT--C-TTCTCT--AA-C-CGTTATACT-GTAGAAG--GA--TCTC---ACAGCA---T---TGCGT----TT-GA-GGATATTTTTGTT--C-TTTTTTACC----A---TTCTGT-A-T-T--GA-CCAATCAAATGATGGTTT--ACGCT-AACTTGAAAATGTTTTTGCT-TATCGGAACATCCT---CG-GTAT------TGAACG-TAT------GAACGGGAATAAT---TATCAAGA---A------GCG---GGGGAAT-AAT-CAAAATAGATGAC---------AGGAGCGATGTTAGAATAA-TACA
gi|21 : aCTT--TCGCT-AACATGAAAGTGTTGTCGCTATATTGGAACACCCT---CG-GTCT------TTAACG-TAC------GGG-------ATT---TGCCGAGA---A----GCGTG---GG----------------AGATAACGGTGACA-AATTG-CGATGTTTGAACAT-GACAGAAtgtgcagaacgttccctctactacatgcttgaattaaaat
gi|24 : TCTAATT-AAAAT-AA-GAT--A-TTTTCT--AA-C-CGTCACATT-GGA-------A--TCTG---A---TA---A---AAT-T----TT-GA-GG------TCATG--T-TATATGACC----CCAATTC-A------T--GA-ATAATTAAGT
gi|25 : TCTAATT-AAAAC-CA-GAC--C-TTCTCT--AA-A-CGTTACTCT-GAAGAAG---------------------------GCGA----TT-GA-GG------TCATGTTT-TTTTTTACC----T---TTC-ACAA-T-T--GA-CCAATCAAATt
gi|28 : ATT-AAAAT-CA-GAC--C-TTCTCT--AA-C-CATTACACT--GAGGTG--GA--TCTG---A----------------T----TT-GA-GG------TCATG--T-TACTTTACC----
gi|29 : taattcatgaactggTCTAATT-AAAAT-CA-GAT--T-TTCTCT--AA-C-CATTACACT-GGGG
gi|3 : atctaattaaaatctaatttctcttaccgtgaaaTTTATT-CTATATCGGAACATCCT---CG-GTAT------TTAATG--------------------AAT---TACCGAGA---A----GCGCC---GGAGAAT--GT-AG--------GACGGCGGCC-AAG
gi|30 : GCA---GGAGATTTAAT-CAAAAGAGATGTCAGCAGAC-AAGGG-TGATGTTAGAGCAC-CACAAAAaccacagaactttccctcaactacatgtgaattataattcgtatatatagactgtcgtcgccatatttgtaatgtcaacttacaatcagtaaatgatttctgattggtccttgattctttgttaaactattgttattggttgaatattcaatgaatcattcatgaactgggatcaaacactagtaacaatgctgtcag
gi|31 : tTT-GAAAT-TA-GAA--C-CTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--Tctt
gi|32 : tgccaaatTAATT-AAAAT-CA-GAT--CTTTCTC---AA-CATGTCACACT-GAA
gi|33 : TCTAATT-AAAAT-TA-GGT--T-TTCTCT--AA-C-CATTACAc
gi|4 : TCTAATT-AAAAT-CA-GAT--C-CTCTCT--AA-C-CATGACACT-GGAG---------------------A---T---TATGT----CA-GA-GG------TTATG--T-TATTTGACt
gi|5 : tttacaaggtagaaaaaaaaatttgttgaaatctggatcgtacaactttttaaacagtttcaatgtttatggatcaacgcaatttctgtttaatatgtgaacttgtaatctgaatacgtttcagtaaaatgatttctaattggtccttgattctttgtcaaactattgggttttattgaattcatgagactgggaTTCTAATTTAAAAT-CA-GAT--C-TGCTAT--AAAC-CGGTACACTTGGAGAAG--CT--TCTG---A---CA---C---TGCGT----TTTAA-GG------CCGTG--T-TATTTGA-C----T---TTC-AC-A-T-TTGGA-CCAATT-AATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAA-ATCCTTAGTA-GTAT------TCAACGTTAC------CAA-------AAT---TACCGAGAAACA----ACGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCCAAAGGA-TGATG-TAGATCAT-CACAG
gi|6 : caTTCTAATT-AAAAT-CA-GAT--C-TGCTAT--AA-C-CGGTACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AA-GG------CCGTG--T-TATTTGACC----T---TTC-AC-A-T-TT-GA-CCAATTAAATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAACATCCT---TA-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---AACACGCGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCC-AAGGA-TGATGTTAGACCAT-CACAGAA
gi|7 : TTCTAATT-AAAAT-CAAGAT--C-TGCTATTAAA-C-CGT-ACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AAAGG------CCGTG--TATATTTGAC---------TTC-AC-A-T-TTGGA-CCAATTAA-T-ACGGCTT---CGCA-AG-ATGGAAGTTTTGTTGTTATAT-GGAA-ATCCT---TAAGTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----ACACGCGCGGAGAAT-AAT-GGAAA-AGATGACTGCGGCA-AAGGA-TGATGTTAGATCATGCACAGAAt
gi|8 : caTCTAATT-AAAGT-CG-GAT--C-TTCTCT--AA-T-CGATATACT-GGAGAAG--GACGTCTG---G---CAGCAC---TGCGT----TC-AA-GG------TCATG--T-TATTTGAGC----T---TTT-GC-A-AAT--GA-CCAATCAAATGAGGGCTT--TCACA-AGCATGAAAGCGTTTTTGCTATATCGGAACATTCT---TA-GTATATATTGTC--CC-TACGG----CAAT------GAT---TGCCGAGA---A----GTGCG---GAAG--------------AGATGACGGCCGCC-AAGAA-CAATGGTAAAACAC-CACAG
gi|9 : aaTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTTAGAAAAAGAATCGTCGAAATTCGGACGATACAAACGTGCATCGTCGCCATTTTTGTAAGGTCAACTTACAATCCCGAATGCGCTTCAGTAAAACGATTTCTGATTAGTCTTTGATTCTTTGTGAAACTATTGTTATTGACCGAATATCTAAAAAAATATTCATGAACTGGGGTCAAATGACATGACCTC
Unaligned ( gi|20 ): AAAAAAATGTCGAGAATTCGATGACTAATTCATGGACTCGTCGCCATTTTTGATATAACGATGCGCTTCAGTAAAATGATTGCTGACTGGTCTTTGTATTGTTATTGGTCGAATAAAAAAAA
Unaligned ( gi|22 ): AGAAAAAGAATTGTCAAATTTCAGATGATAGATTCATGGATTGAATTATGGATCGTTTCCATTTTTTCAATGTGCACTTTAACAATCCAAATGCGCTTTAGTAA
Unaligned ( gi|23 ): ATTCCTGATCGGTCCTTGATTCTTTGTCACGCTATTGTTATTGGTCAAATATCTACTGAATTATTCATGAGTGTGAGGTCAATAACAATACCTCAA
Unaligned ( gi|26 ): CAAAAACAGTGACTCAAAGCAATGCTGTCAGATACCACTTACTCCCATCTGAACGTTTGATGAGAGGATAGACTCTGATTTAATTGATAT
Unaligned ( gi|27 ): ATTGGTCCTTGATTCTTTGTTAAACTATTGCTATATATATTGGTTGAATACATGTATTTAATGAATTATTCATGAACTGGGATCAAA
Alignments
lowQualScore : 2222222222222222 11111111 11111111 111111 4444444444444444 11111111111
lowQualScore : 1 3 1 77 1 44 1 1 1 555555 6666666666666666 5555 2 2 777777 33 2 0 33333333 3 99999999 3 66 88 3 0 777777 111111 1 4 6666666666666666 777 777 8888 666 55555555555 5 4 5 3 1 5
lowQualScore : . . . .. . .. . . . ...... ................ .... . . ...... .. . . ........ . ........ . .. .. . . ...... ...... . . ................ ... ... .... ... ........... . . . . . .
lowQualScore : 9 6 7 22 7 11 7 7 7 000000 2222222222222222 3333 5 5 222222 44 5 4 88888888 3 22222222 3 11 33 9 4 888888 555555 4 0 3333333333333333 000 000 5555 444 22222222222 7 4 0 4 0 7
consensus : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
Reference ( family-2964 ) : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
gi|1 : TTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAAT-
gi|1 : A-GAT--C-TTCTCC--AA-C-CGTTACACT-GGGGAAG--GA--TCTG---A---CA---tttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggctgtcagatccttccccagtgtaacggttggagaagatct
gi|10 : ttgttgctatatcagaacatccttggtatttaacgtatgcatggcaataactaccaagaagtgcgggaaaattttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggcTCTAATG-AAAAT-CA-GAT--C-TTTTCT--AA-A-CGTTACACC-GGAGATG--GA--TCTG---ACAGCA---T---TGCGT----TT-GA-GG------TGGTG--T-TA-TTGACCACAAT---CTC-ACGA-A-T--AATTCAATAAAATAA
gi|11 : attttaaacaaaattttattttttcatggatgacgccatgtcgtacttacaatccgaatacgcttcagtaaaacgactcttgattggccattgatactgttatttTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
gi|12 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatCTAATT-AAAAT-CA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAAG--GA-------------------------GT----TT-GA-TG------TTGTA--T-GATTCGACC----
gi|13 : tatgtatcgacgccatcattttcaaaatgagaacagccgaatacgcttcagtaaagcaatttctgattggtcctcgtctctttgtcaaaactcagtattattatcagtcgaatatctaatgaattattcatgaactgg-CATTACACT-GGAGAAG--GA--TCTG---A---CAGCAT---TGTGT----TT-GA-GG------TAATG--T-T------------T---TT-------T-T---A-CCATTCAAATGATGACTTAATTGC---GC-T---AATTTTG--G-TATATCGGAACAT----------------------ATG-CAC------AGG-------AATGAATACCGAGA---A----GGGCG---GAAAGAT-AATGGGAAA-AAATGATGGCAGCC-ATGAA-TGATGATA
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnTCTAATT-AAAAT-CG-GAT--C-TTCTCG--AA-C-TGTTGCACT-AGACAAG--GA--TCTGCCAG---CA---T---TGCGT----TT-GA-GG------TCATG--T-T--TCGACC----T---TTC-AC-A-T-TTTGA-CCAATCAAATGACGGCTT--TCGCA-A--ATGAAAGTTTTGTTGCTATATCAGAACATCCT---TG-GTAT------TTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAagacgcc
gi|15 : aaT-TA-GAT--C-TTCTCT--AA-T-CTTTACGCT-GGAGAAGACGA--T-TG---A---C
gi|16 : gttcaaacaattctatttcgtgaatcatacctttgggaggagggggcttacaattcttattcagtaaaacgattcctacatgtaaatggtccttgatttttttgttaaactattgttattggtcgtatacttgttgaattattcatgagactgcgTCTAATT-AAAAT-CA-CAT--C-TTCTCT--AA-C-TGTTACCCA-GGGAAAA--AA--TCTA---A---CA---CCATTGCGT----TT-GA-GG------TAATG--T-TATTTGACC----
gi|18 : atgtgcacttacattctaaatgcgcttcagtaaaacgatttctaattggtccttgattcctagtcaaactattgttattggttgaatatttgatgaaaaattcatgaactggTAATT-AAAAT-CA-GAT--C-TTCTCTA-AA-C-TGTTACACT-GGAGGAG--AA--TCTG---A---CAG--CCA-TGTGTTTGATT-GA-GG------TCATG--A-TATTTGACC----TCAGTTC-ATGA-A-T--AA-TTCATCAAAT
gi|19 : tgattggtctttgattctttgtcaaactattgttttggtggagtTCAAATT-TAAAT-CA-CAT--C-TTTTCT--AA-C-TGTTTTACT-GGAGAAG--GA--TCTG------------------CAT----TT-AA-GG------TCATG--T-TATTTGACC----T---TTC-AC-AAT-T--GA-CCAATCAAATGATGGCTT--TTGCGTAG-ATGAGAGATTTGCTGTAATATCGGAA
gi|2 : TTTAATT-AAATT-CA-GAT--C-TTCTCT--AA-C-CGTTATACT-GTAGAAG--GA--TCTC---ACAGCA---T---TGCGT----TT-GA-GGATATTTTTGTT--C-TTTTTTACC----A---TTCTGT-A-T-T--GA-CCAATCAAATGATGGTTT--ACGCT-AACTTGAAAATGTTTTTGCT-TATCGGAACATCCT---CG-GTAT------TGAACG-TAT------GAACGGGAATAAT---TATCAAGA---A------GCG---GGGGAAT-AAT-CAAAATAGATGAC---------AGGAGCGATGTTAGAATAA-TACA
gi|21 : aCTT--TCGCT-AACATGAAAGTGTTGTCGCTATATTGGAACACCCT---CG-GTCT------TTAACG-TAC------GGG-------ATT---TGCCGAGA---A----GCGTG---GG----------------AGATAACGGTGACA-AATTG-CGATGTTTGAACAT-GACAGAAtgtgcagaacgttccctctactacatgcttgaattaaaat
gi|24 : TCTAATT-AAAAT-AA-GAT--A-TTTTCT--AA-C-CGTCACATT-GGA-------A--TCTG---A---TA---A---AAT-T----TT-GA-GG------TCATG--T-TATATGACC----CCAATTC-A------T--GA-ATAATTAAGT
gi|25 : TCTAATT-AAAAC-CA-GAC--C-TTCTCT--AA-A-CGTTACTCT-GAAGAAG---------------------------GCGA----TT-GA-GG------TCATGTTT-TTTTTTACC----T---TTC-ACAA-T-T--GA-CCAATCAAATt
gi|28 : ATT-AAAAT-CA-GAC--C-TTCTCT--AA-C-CATTACACT--GAGGTG--GA--TCTG---A----------------T----TT-GA-GG------TCATG--T-TACTTTACC----
gi|29 : taattcatgaactggTCTAATT-AAAAT-CA-GAT--T-TTCTCT--AA-C-CATTACACT-GGGG
gi|3 : atctaattaaaatctaatttctcttaccgtgaaaTTTATT-CTATATCGGAACATCCT---CG-GTAT------TTAATG--------------------AAT---TACCGAGA---A----GCGCC---GGAGAAT--GT-AG--------GACGGCGGCC-AAG
gi|30 : GCA---GGAGATTTAAT-CAAAAGAGATGTCAGCAGAC-AAGGG-TGATGTTAGAGCAC-CACAAAAaccacagaactttccctcaactacatgtgaattataattcgtatatatagactgtcgtcgccatatttgtaatgtcaacttacaatcagtaaatgatttctgattggtccttgattctttgttaaactattgttattggttgaatattcaatgaatcattcatgaactgggatcaaacactagtaacaatgctgtcag
gi|31 : tTT-GAAAT-TA-GAA--C-CTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--Tctt
gi|32 : tgccaaatTAATT-AAAAT-CA-GAT--CTTTCTC---AA-CATGTCACACT-GAA
gi|33 : TCTAATT-AAAAT-TA-GGT--T-TTCTCT--AA-C-CATTACAc
gi|4 : TCTAATT-AAAAT-CA-GAT--C-CTCTCT--AA-C-CATGACACT-GGAG---------------------A---T---TATGT----CA-GA-GG------TTATG--T-TATTTGACt
gi|5 : tttacaaggtagaaaaaaaaatttgttgaaatctggatcgtacaactttttaaacagtttcaatgtttatggatcaacgcaatttctgtttaatatgtgaacttgtaatctgaatacgtttcagtaaaatgatttctaattggtccttgattctttgtcaaactattgggttttattgaattcatgagactgggaTTCTAATTTAAAAT-CA-GAT--C-TGCTAT--AAAC-CGGTACACTTGGAGAAG--CT--TCTG---A---CA---C---TGCGT----TTTAA-GG------CCGTG--T-TATTTGA-C----T---TTC-AC-A-T-TTGGA-CCAATT-AATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAA-ATCCTTAGTA-GTAT------TCAACGTTAC------CAA-------AAT---TACCGAGAAACA----ACGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCCAAAGGA-TGATG-TAGATCAT-CACAG
gi|6 : caTTCTAATT-AAAAT-CA-GAT--C-TGCTAT--AA-C-CGGTACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AA-GG------CCGTG--T-TATTTGACC----T---TTC-AC-A-T-TT-GA-CCAATTAAATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAACATCCT---TA-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---AACACGCGCG---GGAGAAT-AAT-GGAAA-AGATGACTGCGGCC-AAGGA-TGATGTTAGACCAT-CACAGAA
gi|7 : TTCTAATT-AAAAT-CAAGAT--C-TGCTATTAAA-C-CGT-ACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AAAGG------CCGTG--TATATTTGAC---------TTC-AC-A-T-TTGGA-CCAATTAA-T-ACGGCTT---CGCA-AG-ATGGAAGTTTTGTTGTTATAT-GGAA-ATCCT---TAAGTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----ACACGCGCGGAGAAT-AAT-GGAAA-AGATGACTGCGGCA-AAGGA-TGATGTTAGATCATGCACAGAAt
gi|8 : caTCTAATT-AAAGT-CG-GAT--C-TTCTCT--AA-T-CGATATACT-GGAGAAG--GACGTCTG---G---CAGCAC---TGCGT----TC-AA-GG------TCATG--T-TATTTGAGC----T---TTT-GC-A-AAT--GA-CCAATCAAATGAGGGCTT--TCACA-AGCATGAAAGCGTTTTTGCTATATCGGAACATTCT---TA-GTATATATTGTC--CC-TACGG----CAAT------GAT---TGCCGAGA---A----GTGCG---GAAG--------------AGATGACGGCCGCC-AAGAA-CAATGGTAAAACAC-CACAG
gi|9 : aaTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
blockSeqs : T T A AT T TA A A T ACGA ACAGCAT TTGA T A ATATTT TT A TCAG T ATTTT . . GT C TAGTA ATATTG T T GCATGGCAAT GAA AAC ACAC CGC TAATCAAAAG G A G T A G
blockSeqs : . T . AT . A . . . GACG CCAGCAT . . . . . . CCAA . ATTTG . . A C TAA . G . GAACGGGAAT . . . . AATCAAAAT G . . T G .
blockSeqs : . . . AT . . . . . GA ACACCAT . . . . . . T . ATTTG . . T C TG . T . GGCAAT . . . . AATGGAAA A . . T T .
blockSeqs : . . . . . . . . . AG ACAGCCA . . . . . . T . GAAT . . T C CG . T . AGG . . . . AATGGAAA T . . T C .
blockSeqs : . . . . . . . . . GA ACAGCAT . . . . . . T . AATT . . A C CG . C . GGG . . . . AATGGAAA T . . T T .
blockSeqs : . . . . . . . . . GA GCAGCAC . . . . . . A . AATT . . A . CG . C . CAA . . . . GTAG T . . G A .
blockSeqs : . . . . . . . . . GA ATGT . . . . . . T . ATTT . . A . TA . C . CAA . . . . . G . . .
blockSeqs : . . . . . . . . . AA ATAA . . . . . . T . AAAT . . A . TA . C . CAA . . . . . . .
blockSeqs : . . . . . . . . . AA ACAC . . . . . . T . ATT . . . . . . . . . .
blockSeqs : . . . . . . . . . GA ACAC . . . . . . T . TT . .
blockSeqs : . . . . . . . . . GA ACAC . . . . . . . . T .
blockSeqs : . . . . . . . . . GA ATGT . . . . . .
blockSeqs : . . . . . . . . . GA AT . . . . . .
blockSeqs : . . . . . . . . . CT A . . . . . .
blockSeqs : . . . . . . . . . CT . . . . . . .
blockSeqs : . . . . . . . . . CT .
blockSeqs : . . . . . . . . . AG .
blockSeqs : . . . . . . . . . A
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : .
blockSeqCons : T******* ** A* CGA************* AATGAAA****
originalCons : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TAC------CAA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT-GGAAA-AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
finalCons : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACCT-------TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTAT------TCAACG-TACCGA-------------AAT---TACCGAGA---A----GCGCG---GGAGAATAATGAAA----AGATGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTTAGAAAAAGAATCGTCGAAATTCGGACGATACAAACGTGCATCGTCGCCATTTTTGTAAGGTCAACTTACAATCCCGAATGCGCTTCAGTAAAACGATTTCTGATTAGTCTTTGATTCTTTGTGAAACTATTGTTATTGACCGAATATCTAAAAAAATATTCATGAACTGGGGTCAAATGACATGACCTC
Unaligned ( gi|20 ): AAAAAAATGTCGAGAATTCGATGACTAATTCATGGACTCGTCGCCATTTTTGATATAACGATGCGCTTCAGTAAAATGATTGCTGACTGGTCTTTGTATTGTTATTGGTCGAATAAAAAAAA
Unaligned ( gi|22 ): AGAAAAAGAATTGTCAAATTTCAGATGATAGATTCATGGATTGAATTATGGATCGTTTCCATTTTTTCAATGTGCACTTTAACAATCCAAATGCGCTTTAGTAA
Unaligned ( gi|23 ): ATTCCTGATCGGTCCTTGATTCTTTGTCACGCTATTGTTATTGGTCAAATATCTACTGAATTATTCATGAGTGTGAGGTCAATAACAATACCTCAA
Unaligned ( gi|26 ): CAAAAACAGTGACTCAAAGCAATGCTGTCAGATACCACTTACTCCCATCTGAACGTTTGATGAGAGGATAGACTCTGATTTAATTGATAT
Unaligned ( gi|27 ): ATTGGTCCTTGATTCTTTGTTAAACTATTGCTATATATATTGGTTGAATACATGTATTTAATGAATTATTCATGAACTGGGATCAAA
Alignments
lowQualScore : 2222222222222222 11111111 11111111 5555555555555555 222222222222
lowQualScore : 1 3 1 77 1 44 1 1 1 555555 6666666666666666 5555 2 2 777777 33 2 0 33333333 3 99999999 3 66 88 3 0 777777 3 4 7777777777777777 777 777 8888 666 0 999999999999 66 5 4 5 3 1 5
lowQualScore : . . . .. . .. . . . ...... ................ .... . . ...... .. . . ........ . ........ . .. .. . . ...... . . ................ ... ... .... ... . ............ .. . . . . . .
lowQualScore : 9 6 7 22 7 11 7 7 7 000000 2222222222222222 3333 5 5 222222 44 5 4 88888888 3 22222222 3 11 33 9 4 888888 0 0 9999999999999999 000 000 5555 444 9 333333333333 11 7 4 0 4 0 7
consensus : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTATTTAACG-TAC------CGA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AATG-GAAA--AGA--TGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
Reference ( family-2964 ) : TTCTAATT-AAAAT-CA-GAT--C-TTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--TCTG---A---CA---C---TGCGT----TT-GA-GG------TCGTG--T-TATTTGACC----T---TTC-AC-A-T-T--GA-CCAATCAAATGACGGCTT--TCGCA-AGCATGAAAGTTTTGTTGCTATATCGGAACATCCT---TG-GTATTCAACG-TAC------CGA-------AAT---TACCGAGA---A----GCGCG---GGAGAAT-AAT--GAAA--AGA--TGACGGCGGCC-AAGGA-CGATGTTAGANCAT-CACAGAA
gi|1 : TTGTTGCTATATCAGAACATCCT---TG-GTATTTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAAT-
gi|1 : A-GAT--C-TTCTCC--AA-C-CGTTACACT-GGGGAAG--GA--TCTG---A---CA---tttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggctgtcagatccttccccagtgtaacggttggagaagatct
gi|10 : ttgttgctatatcagaacatccttggtatttaacgtatgcatggcaataactaccaagaagtgcgggaaaattttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnccttgtactcgagagaagcgatttctaattggtccttgcttcttcatcaaactaatgttattggtcgaatatttattgaataattcatgagaatgggatcaataccatggcTCTAATG-AAAAT-CA-GAT--C-TTTTCT--AA-A-CGTTACACC-GGAGATG--GA--TCTG---ACAGCA---T---TGCGT----TT-GA-GG------TGGTG--T-TA-TTGACCACAAT---CTC-ACGA-A-T--AATTCAATAAAATAA
gi|11 : attttaaacaaaattttattttttcatggatgacgccatgtcgtacttacaatccgaatacgcttcagtaaaacgactcttgattggccattgatactgttatttTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
gi|12 : tttatgtatcgacgcatcattttcaaaatgagaacaagccgatacgcttcagtaaaagaatttctgattggtcctcgttctctttgtcaaaactccaggtattattatgcagtcgatatctatgaaattattcatgaacttggggtcgaaatcaatCTAATT-AAAAT-CA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAAG--GA-------------------------GT----TT-GA-TG------TTGTA--T-GATTCGACC----
gi|13 : tatgtatcgacgccatcattttcaaaatgagaacagccgaatacgcttcagtaaagcaatttctgattggtcctcgtctctttgtcaaaactcagtattattatcagtcgaatatctaatgaattattcatgaactgg-CATTACACT-GGAGAAG--GA--TCTG---A---CAGCAT---TGTGT----TT-GA-GG------TAATG--T-T------------T---TT-------T-T---A-CCATTCAAATGATGACTTAATTGC---GC-T---AATTTTG--G-TATATCGGAACAT----------------ATG-CAC------AGG-------AATGAATACCGAGA---A----GGGCG---GAAAGAT-AATGGGAAA--AAA--TGATGGCAGCC-ATGAA-TGATGATA
gi|14 : nnnnnnnnnnnnnnnnnnnnnnnnnnnTCTAATT-AAAAT-CG-GAT--C-TTCTCG--AA-C-TGTTGCACT-AGACAAG--GA--TCTGCCAG---CA---T---TGCGT----TT-GA-GG------TCATG--T-T--TCGACC----T---TTC-AC-A-T-TTTGA-CCAATCAAATGACGGCTT--TCGCA-A--ATGAAAGTTTTGTTGCTATATCAGAACATCCT---TG-GTATTTAACG-TATGCATGGCAAT------AAC---TACCAAGA---A----GTGCG---GGAAAagacgcc
gi|15 : aaT-TA-GAT--C-TTCTCT--AA-T-CTTTACGCT-GGAGAAGACGA--T-TG---A---C
gi|16 : gttcaaacaattctatttcgtgaatcatacctttgggaggagggggcttacaattcttattcagtaaaacgattcctacatgtaaatggtccttgatttttttgttaaactattgttattggtcgtatacttgttgaattattcatgagactgcgTCTAATT-AAAAT-CA-CAT--C-TTCTCT--AA-C-TGTTACCCA-GGGAAAA--AA--TCTA---A---CA---CCATTGCGT----TT-GA-GG------TAATG--T-TATTTGACC----
gi|18 : atgtgcacttacattctaaatgcgcttcagtaaaacgatttctaattggtccttgattcctagtcaaactattgttattggttgaatatttgatgaaaaattcatgaactggTAATT-AAAAT-CA-GAT--C-TTCTCTA-AA-C-TGTTACACT-GGAGGAG--AA--TCTG---A---CAG--CCA-TGTGTTTGATT-GA-GG------TCATG--A-TATTTGACC----TCAGTTC-ATGA-A-T--AA-TTCATCAAAT
gi|19 : tgattggtctttgattctttgtcaaactattgttttggtggagtTCAAATT-TAAAT-CA-CAT--C-TTTTCT--AA-C-TGTTTTACT-GGAGAAG--GA--TCTG------------------CAT----TT-AA-GG------TCATG--T-TATTTGACC----T---TTC-AC-AAT-T--GA-CCAATCAAATGATGGCTT--TTGCGTAG-ATGAGAGATTTGCTGTAATATCGGAA
gi|2 : TTTAATT-AAATT-CA-GAT--C-TTCTCT--AA-C-CGTTATACT-GTAGAAG--GA--TCTC---ACAGCA---T---TGCGT----TT-GA-GGATATTTTTGTT--C-TTTTTTACC----A---TTCTGT-A-T-T--GA-CCAATCAAATGATGGTTT--ACGCT-AACTTGAAAATGTTTTTGCT-TATCGGAACATCCT---CG-GTATTGAACG-TATGAA---CGGGAAT---AAT---TATCAAGA---A------GCG---GGGGAAT-AAT--CAAAATAGA--TGAC---------AGGAGCGATGTTAGAATAA-TACA
gi|21 : aCTT--TCGCT-AACATGAAAGTGTTGTCGCTATATTGGAACACCCT---CG-GTCTTTAACG-TAC------GGG-------ATT---TGCCGAGA---A----GCGTG---GGAGA-------------------TAACGGTGACA-AATTG-CGATGTTTGAACAT-GACAGAAtgtgcagaacgttccctctactacatgcttgaattaaaat
gi|24 : TCTAATT-AAAAT-AA-GAT--A-TTTTCT--AA-C-CGTCACATT-GGA-------A--TCTG---A---TA---A---AAT-T----TT-GA-GG------TCATG--T-TATATGACC----CCAATTC-A------T--GA-ATAATTAAGT
gi|25 : TCTAATT-AAAAC-CA-GAC--C-TTCTCT--AA-A-CGTTACTCT-GAAGAAG---------------------------GCGA----TT-GA-GG------TCATGTTT-TTTTTTACC----T---TTC-ACAA-T-T--GA-CCAATCAAATt
gi|28 : ATT-AAAAT-CA-GAC--C-TTCTCT--AA-C-CATTACACT--GAGGTG--GA--TCTG---A----------------T----TT-GA-GG------TCATG--T-TACTTTACC----
gi|29 : taattcatgaactggTCTAATT-AAAAT-CA-GAT--T-TTCTCT--AA-C-CATTACACT-GGGG
gi|3 : atctaattaaaatctaatttctcttaccgtgaaaTTTATT-CTATATCGGAACATCCT---CG-GTATTTAATG--------------------AAT---TACCGAGA---A----GCGCC---GGAGAAT--GT--------AG----GACGGCGGCC-AAG
gi|30 : GCA---GGAGATTTAAT--CAAA--AGAGATGTCAGCAGAC-AAGGG-TGATGTTAGAGCAC-CACAAAAaccacagaactttccctcaactacatgtgaattataattcgtatatatagactgtcgtcgccatatttgtaatgtcaacttacaatcagtaaatgatttctgattggtccttgattctttgttaaactattgttattggttgaatattcaatgaatcattcatgaactgggatcaaacactagtaacaatgctgtcag
gi|31 : tTT-GAAAT-TA-GAA--C-CTCTCT--AA-C-CGTTACACT-GGAGAAG--GA--Tctt
gi|32 : tgccaaatTAATT-AAAAT-CA-GAT--CTTTCTC---AA-CATGTCACACT-GAA
gi|33 : TCTAATT-AAAAT-TA-GGT--T-TTCTCT--AA-C-CATTACAc
gi|4 : TCTAATT-AAAAT-CA-GAT--C-CTCTCT--AA-C-CATGACACT-GGAG---------------------A---T---TATGT----CA-GA-GG------TTATG--T-TATTTGACt
gi|5 : tttacaaggtagaaaaaaaaatttgttgaaatctggatcgtacaactttttaaacagtttcaatgtttatggatcaacgcaatttctgtttaatatgtgaacttgtaatctgaatacgtttcagtaaaatgatttctaattggtccttgattctttgtcaaactattgggttttattgaattcatgagactgggaTTCTAATTTAAAAT-CA-GAT--C-TGCTAT--AAAC-CGGTACACTTGGAGAAG--CT--TCTG---A---CA---C---TGCGT----TTTAA-GG------CCGTG--T-TATTTGA-C----T---TTC-AC-A-T-TTGGA-CCAATT-AATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAA-ATCCTTAGTA-GTATTCAACGTTAC------CAA-------AAT---TACCGAGAAACA----ACGCG---GGAGAAT-AATG-GAAA--AGA--TGACTGCGGCCAAAGGA-TGATG-TAGATCAT-CACAG
gi|6 : caTTCTAATT-AAAAT-CA-GAT--C-TGCTAT--AA-C-CGGTACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AA-GG------CCGTG--T-TATTTGACC----T---TTC-AC-A-T-TT-GA-CCAATTAAATGACGGCTT--TCGCA-AGCATGGAAGTTTTGTTGTTATATCGGAACATCCT---TA-GTATTCAACG-TAC------CAA-------AAT---TACCGAGA---AACACGCGCG---GGAGAAT-AATG-GAAA--AGA--TGACTGCGGCC-AAGGA-TGATGTTAGACCAT-CACAGAA
gi|7 : TTCTAATT-AAAAT-CAAGAT--C-TGCTATTAAA-C-CGT-ACACT-GGAGAAG--CT--TCTG---A---CA---C---TGCGT----TT-AAAGG------CCGTG--TATATTTGAC---------TTC-AC-A-T-TTGGA-CCAATTAA-T-ACGGCTT---CGCA-AG-ATGGAAGTTTTGTTGTTATAT-GGAA-ATCCT---TAAGTATTCAACG-TAC------CAA-------AAT---TACCGAGA---A----ACACGCGCGGAGAAT-AATG-GAAA--AGA--TGACTGCGGCA-AAGGA-TGATGTTAGATCATGCACAGAAt
gi|8 : caTCTAATT-AAAGT-CG-GAT--C-TTCTCT--AA-T-CGATATACT-GGAGAAG--GACGTCTG---G---CAGCAC---TGCGT----TC-AA-GG------TCATG--T-TATTTGAGC----T---TTT-GC-A-AAT--GA-CCAATCAAATGAGGGCTT--TCACA-AGCATGAAAGCGTTTTTGCTATATCGGAACATTCT---TA-GTATATATTG-TCC------CTACGGCAATGAT---TGCCGAGA---A----GTGCG---GAAG---------------AGA--TGACGGCCGCC-AAGAA-CAATGGTAAAACAC-CACAG
gi|9 : aaTCTAATT-AAAATTCA-GATATC-TTCTCT--AT-C-CTTTACACT-GGAGAGG--AG--TTTG---A---TG---T---TG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): GTTAGAAAAAGAATCGTCGAAATTCGGACGATACAAACGTGCATCGTCGCCATTTTTGTAAGGTCAACTTACAATCCCGAATGCGCTTCAGTAAAACGATTTCTGATTAGTCTTTGATTCTTTGTGAAACTATTGTTATTGACCGAATATCTAAAAAAATATTCATGAACTGGGGTCAAATGACATGACCTC
Unaligned ( gi|20 ): AAAAAAATGTCGAGAATTCGATGACTAATTCATGGACTCGTCGCCATTTTTGATATAACGATGCGCTTCAGTAAAATGATTGCTGACTGGTCTTTGTATTGTTATTGGTCGAATAAAAAAAA
Unaligned ( gi|22 ): AGAAAAAGAATTGTCAAATTTCAGATGATAGATTCATGGATTGAATTATGGATCGTTTCCATTTTTTCAATGTGCACTTTAACAATCCAAATGCGCTTTAGTAA
Unaligned ( gi|23 ): ATTCCTGATCGGTCCTTGATTCTTTGTCACGCTATTGTTATTGGTCAAATATCTACTGAATTATTCATGAGTGTGAGGTCAATAACAATACCTCAA
Unaligned ( gi|26 ): CAAAAACAGTGACTCAAAGCAATGCTGTCAGATACCACTTACTCCCATCTGAACGTTTGATGAGAGGATAGACTCTGATTTAATTGATAT
Unaligned ( gi|27 ): ATTGGTCCTTGATTCTTTGTTAAACTATTGCTATATATATTGGTTGAATACATGTATTTAATGAATTATTCATGAACTGGGATCAAA