lowQualScore : 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111 11111111111111111111111111111111111111111111 22222222222222222222222222222222222222222222 1111111111111 11111111111111111111111111111111111111111111 111111111111111111111111
lowQualScore : 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 1 3333333333333 2222 22 1 111 00000000000000000000000000000000000000000000000000000000000000000000 1 11 5555555555 2 2222222 44444444444444444444444444444444444 3333 1 1 2 8888 1 00000000000000000000000000000000000000000000 22 99999999999999999999999999999999999999999999 1 222 11 1 1 9999999999999 1 222 1 22222222222222222222222222222222222222222222 444444444 11 1111 1 33333333 1 6666666666666666666 11111111111 33333 1 22 1 55555555 111111111111111111111111 222 11 777 1 1 111
lowQualScore : 6 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 6 88 3 2 3 1 2222222222222 9999 44 3 1 0 1 000 22 99999999999999999999999999999999999999999999999999999999999999999999 4 6 4 3 55 6666666666 2 0 44 9999999 88888888888888888888888888888888888 4444 0 1 5 666 0 0 5555 5 6 6 11111111111111111111111111111111111111111111 6 11 22222222222222222222222222222222222222222222 7 6 111 22 7 7 6666666666666 6 6 7 999 7 6 6 6 77777777777777777777777777777777777777777777 8 777777777 3 6 8 7 6 7 88 11 5555 2 88888888 0 3 5 2 3333333333333333333 6 8 88888888888 00000 7 00 2 00000000 9 111111111111111111111111 6 6 8 333 4 6 77 000 4 5 6 2 6 88 6 5 6 2 1 5 0 1 0 3 111 3
lowQualScore : . ...................................................................................................... . .. . . . . ............. .... .. . . . . ... .. .................................................................... . . . . .. .......... . . .. ....... ................................... .... . . . ... . . .... . . . ............................................ . .. ............................................ . . ... .. . . ............. . . . ... . . . . ............................................ . ......... . . . . . . .. .. .... . ........ . . . . ................... . . ........... ..... . .. . ........ . ........................ . . . ... . . .. ... . . . . . .. . . . . . . . . . . ... .
lowQualScore : 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 00 0 5 3 0 7777777777777 7777 00 3 0 7 0 777 00 00000000000000000000000000000000000000000000000000000000000000000000 7 7 0 3 77 5555555555 5 0 77 0000000 33333333333333333333333333333333333 7777 7 0 5 555 5 0 0000 0 0 0 00000000000000000000000000000000000000000000 0 00 00000000000000000000000000000000000000000000 0 0 000 00 0 0 0000000000000 0 0 0 000 0 0 0 0 00000000000000000000000000000000000000000000 3 777777777 7 0 3 0 0 3 33 77 0000 0 77777777 2 0 5 2 2222222222222222222 5 8 22222222222 00000 3 00 0 00000000 7 000000000000000000000000 0 0 3 333 7 0 33 000 7 5 0 2 5 66 7 0 0 7 7 7 7 4 9 0 222 2
consensus : NATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCTTTNTGTATTGAGATGACTGCGTTGAAATAATTCCAAGTAGATCAATGCACGTGCATGCAATTTAGCANNGGATNATAATNAATTTGAAAA-TCGTT-ATGAT-ATTA-TTTTTTTTATCA--AAAATAATTTA-TTTTGCGTTTAAATTCGATAAGGGAATACCCGCATTGATTCA------ATG---ACATNTG------ACGTTGATTGATG--ATACGTA-------------C--GT---ATTTNGCACACGNACAT-AAAGGAGACTTTGAAGATACCCGCNATAAGTTCGAGAG-GNGC-ATAAAGGAAGCCA-------TTG-------------AGACG-------ATAGGGTG-ACTTCGTGTCAATTCTCCCGTAGACATNGNATANATGCAATTTGTTT----CACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTGTC-------------TTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATNTACGAAAATNNGCGGTGGANGGTCNAGCCTTGTACAATTTAAAACATTACGTC-------GAATNAAGAGCAATTATTACAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTA-NA---A-GACTCACTGACGCNTGAGTTCCGAATGAC------CAN----------GCGGGAACGAACGGTATTNCANGGGAACGAAACGG-TTGGTTTTG-GAATGGAAAGC---GG-TCTGAGAACGGAAAAA-CGAACGGGTTG---G--GAATGGTTTGATGTGGGAACTGAACGGTTCT---TATCGAGATAGNAACGACTCAAATGGTGTA---GTNGTACGCTTCAGGGTCTCTACTATACAATAA-ACCTGCACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAAGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTATCGACAAGATAGCTCACAATATTCACCANNCTTTCCAGTCTCACA
Reference ( gi|1 ) : AATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT-----ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTGAAAA-TCATTAATGATGATTAATTTTTTTTATTA--AAAAGGATTTA-TTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCA------ATG---ACATA--------ACGTTGATTGGTG--ATATGTA-------------C--GT---ATTTAGCACACATACAT-AAAGGAGACTTTAAAGACACCCGCGA-AAATTCAAGAAGGAGC-ATAAAGGAAGCCA-------TTG-------------AAA---------ATAGGGT--AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTATTTTTTT-AACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATA---A-GACTCACTGACGCTTTAATTCCAAATGAC------CAA----------GGGGGAACGAATGGTACTGCATGAGAACAAATCGATTTGGCTTTG-GAATGGAAAACTTTGG-TCTGAGAACAAAAAAAATGACCAGATTGAAGG--GAATCGTTTAATGTGAGAACAGAACGGTTCT---TATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGCACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTATCGACAAAATAGCTCACAATATTCACCAATCTTTCCAGTCTCACA
gi|7 : ATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCTTTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTGAAAA-TCGTTAAT-------AATTTTCTTTGT----AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACTTTGAAGATACCTGCCATAAGTTGGAGA--GTGCTATCAAGGGAGCCAATGTCACTTG-------------AGACGGGGACCTATAGGGTG-GACTCGTGTCAAATCTCCCGTAGAC
gi|2 : TAT-----ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCAT--ATGATGATTA-TTTTTTTTATCA--AAAATTATTTA-TTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCA------GTG---ACATATG------ACGTTGATTGATG--ATAGGTA-------------C--GT---ATTTAGCACACATACAT-AAAAATGACT----------CCGCGA-AAAATCAAGAATGGGC-ATAAAGGAAGCCA-------TTG-------------AAA---------ATAGGGT--ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGTTT----CACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTGTC-------------TTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAA---A-AATTCACTGACCCTTGAATACCGAATGAC------CAA----------GGGG-AACGAACGGCATAGCAGAGGAGCAAAACGATTTGG-TTTGCGAATGAAAA------G-TCTGAGAACGGAAAAA-----TAAATTG---GTTGAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGCACATCCCACTGA-AGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTATCGACAAAATAGCTCACAATATTCACC-ATC-TTCCAGTCTCACAtagg
gi|9 : catttAACTTGCAAA-TCGTTCCTAATCATTA-----TTCTACTATGAAAATAATTTA-TATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCA------ATG-----TTT--------ATGTTGATTGATG--GTATATC-------------C--ATTCGACTTTG-AGAGGGATAT-AAAGGAAACt
gi|9 : aacatgaaatcaaacaaTTTGAGAGGGA-T-ATAAAGGAAACCA-------TTGTCATCTGATATGGAGACAT------ATAGGGTGGACTTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAcattgtcatctgatatggagacatatagggtggacttcctgtcaattatcctgtagactagtatatatgtaacgttactgtagcaactcctagtgcatcgatcacttcatgcctact
gi|6 : aacatgaaatcaaacaaaacttgcaaatcgttcctaatcattattctactatgaaaataatttatattgcgttggaatttgataaggacatacctgcattgtttcaatgtttatgttgattgatggtatatccattcgacATAT-------TTTACGATGGAAGA--AA-----GTA--ACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTG----AATACAAA-GACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAAGAAACGGATTGGTTTGG-GAATGGAAAGCTTTGC-TCTGAGAACAGAAACA-TGAACGGGTTAAAGA--AAATGATTTGTTGAGGGAACTGAAAGGTTCT---TATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGTACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATATCGACAAGATAGCTCACAATATTTACCAATCTTTCCAGTCcgttactgtagcaactcctagtgcatcgatcacttcatgcctact
gi|10 : TTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTA-CA---ATGACTGACTGATGCGCGAGTTTCAAAAGAC------AAC----------GCGGGAACGAACAGTTTTAGTTGAGAACA
gi|13 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncACGCGTAAGTTTCAAATGAC------CAT----------GCAGCAACGACTG---TTTTAAGGAAACGAAC------GGTTTTA--AATG-AGAAC---GGATCGCTGAACATTATAAACGAACAG----------------TTTGATATGGGAATTGAACAGTTCT---TATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggaactctttgatctg
gi|3 : ACTACACAATAC-ACCTGTACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTATCGACAAGATAGTTGACAATAGTCACCATACTTTCCAGTCTCACA
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcATTATA--ATAA-ACCTGCACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTATCGACAGGACAGCTCGCAATATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|8 : ataTAATACCTGCACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATACCGACAAGATttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|14 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatTGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTATCGACAc
gi|12 : cactttgcaatgtacctgttgatgaTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTATGGGCA
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 1111111111111111111111111 1111111111111
lowQualScore : 55555555555555 2 1 1111 3333333333333333333333333 1 33333333 1 11 1 7777777777777777777777 11 5555555555555555555555 1 3333333333 1111111 33333 1 77777777777777777777777777777777 22 4444 66666666666666666666666666666666666666666666 1111111111111 1 4444444444 99999999999 1 3333333333333 33333333 11 1 333 1 3333333333333333333333 22222 11 44444444 111 11 55555555555555 111 111 222222222
lowQualScore : 33333333333333 2 0 5 77 66 7777 1 7777777777777777777777777 0 0 11 22 0 1 1 0 55555555 3 0 1 3 99 1 0 0 3333333333333333333333 33 4 8888888888888888888888 1 2 33 0 66 9999999999 0 77 1111111 99999 0 3 00000000000000000000000000000000 7 222 1 44 2222 2 66666666666666666666666666666666666666666666 2 0000000000000 5 3 1111111111 4 3 3 4 4 3 55555555555 4 4 4 5 4444444444444 22 6 77 1 2 4 2 22222222 1 4 2 3 33 0 2 2 111 0 1 6666666666666666666666 0 6 1 1 8 6 66666 11 2 44444444 222 22 33333333333333 0 4 777 1 1 777 1 88 77 222222222 5 3 0 4 0 4 22
lowQualScore : .............. . . . .. .. .... . ......................... . . .. .. . . . . ........ . . . . .. . . . ...................... .. . ...................... . . .. . .. .......... . .. ....... ..... . . ................................ . ... . .. .... . ............................................ . ............. . . .......... . . . . . . ........... . . . . ............. .. . .. . . . . ........ . . . . .. . . . ... . . ...................... . . . . . . ..... .. . ........ ... .. .............. . . ... . . ... . .. .. ......... . . . . . . ..
lowQualScore : 00000000000000 5 0 5 00 00 7777 0 0000000000000000000000000 7 7 33 00 7 0 0 0 88888888 2 0 2 2 88 2 0 2 2222222222222222222222 88 2 2222222222222222222222 0 5 00 0 88 0000000000 2 00 0000000 88888 0 2 55555555555555555555555555555555 3 777 0 00 5555 5 00000000000000000000000000000000000000000000 5 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 5 0000000000000 00 0 00 0 5 0 0 88888888 0 0 5 2 88 0 5 5 000 0 0 4444444444444444444444 8 4 0 0 0 0 00000 88 5 22222222 222 00 88888888888888 2 0 555 0 2 555 0 00 33 999999999 7 0 4 4 7 4 00
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-TATGTAT-------ACTGC-------------CAAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTGAAAA-TCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATG---------ACATATG------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGTGA-TCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACA-AA-GACTCACTGACGCTTGAGTTCCGAATGAC---------CACGCG-------GGAACGAACGGTATTNCATGAGAAC-GAAACGA-TT-GGTTTNGGAATGGAAAACTTTGG-TCTGAGAACA-GAAAAA-TGAACGGGTT---G---GGAATGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGACAAGATAGCTCACAATATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCTTTNTGTATTGAGATGACTGCGTTGAAATAATTCCAAGTAGATCAATGCACGTGCATGCAATTTAGCANNGGATNATAATNAATTTGAAAA-TCGTTA-TGAT-ATTA-TTTTTTTTATCAAAAATAAT-TTATTTTGCGTTTAAATTCGATAAGGGAATACCCGCATTGATTCAATG---------ACATNTG------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTNGCACACGNACA-TAAAGGAGACT-TTGAAGAT-ACCCGCNATAAGTTCGAGA-G-GNGC-ATAAAGGAAGCCA-------TTGAGACG-------ATAGGGTGACTTCGTGTCAATTCTCCCGTAGACATNGNATANATGCAATTTGTTT----CACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTGTC-------------TTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATNTACGAAAATNNGCGGTGGANGGTCNAGCCTTGTACAATTTAAAACATTACGTC-------GAATNAAGAGCAATTATTACAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTA-N-AA-GACTCACTGACGCNTGAGTTCCGAATGAC---------CANGCG-------GGAACGAACGGTATTNCANGGGAAC-GAAACGG-TT-GGTTTTGGAATGGAAAGC---GG-TCTGAGAACG-GAAAAA-CGAACGGGTT---G---GGAATGGTTTGATGTGGGAACTGAACGGTTC---TTATCGAGATAGNAACGACTCAAATGGTGTA---GTNGTACGCTTCAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAAGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGACAAGATAGCTCACAATATTCACCANNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT-----ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTGAAAA-TCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATG---------ACATA--------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGTAA-TCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTATTTTTTT-AACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTA-ATAA-GACTCACTGACGCTTTAATTCCAAATGAC---------CAAGGG-------GGAACGAATGGTACTGCATGAGAAC-AAATCGA-TTTGGCTTTGGAATGGAAAACTTTGG-TCTGAGAACA-AAAAAAATGACCAGATT---GAAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGACAAAATAGCTCACAATATTCACCAATCTTTCCAGTCTCACA
gi|10 : aTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTA-C-AATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGCG-------GGAACGAACAGTTTTAGTTGAGAACAGGAAC
gi|12 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCAtctttgatctg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGCA-------GCAACG-AC--TGTTTTAAGGAAAC-GAA------C-GGTTTT-AAAT-GAGAAC---GGATCGCTGAACATTATAAA-CGAAC-----------------AGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAttgcaaagaacaattgattccatacagtccagggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGACA
gi|2 : cATTTTATATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCAT-A-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTG---------ACATATG------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGAAAAAT-CAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGTTT----CACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTGTC-------------TTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACA-AA-AATTCACTGACCCTTGAATACCGAATGAC---------CAAG-G-------GGAACGAACGGCATAGCAGAGGAGC-AAAACGATTT-GGTTTGCGAATGAAAA------G-TCTGAGAACG-GAAAAA-TAAATTGGTT--------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGACAAAATAGCTCACAATATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGACAAGATAGTTGACAATAGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGACAGGACAGCTCGCAATATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-CAAGGGATCTCACAGTttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACA-AA-GACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATT-GGTTTGGGAATGGAAAGCTTTGC-TCTGAGAACA-GAAACA-TGAACGGGTTAAAG---AAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGACAAGATAGCTCACAATATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCTTTCTGTATTGAGATGATTG--------------CAAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTGAAAA-TCGTTA---AT-A--A-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGACAAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTGCAAA-TCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG------------TTT-------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATCTG--ATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 99999999999999999999999999 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 333333333333 77777777777777777777777777 1 33333333 11 1 444444444444444444444 1111 2 22222222 11 11 5555555555 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 77777777777777777777777777 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 777 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 777777777777 88888888888888888888888888 22 1 1 0 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 0000 8 8 0 99 2 11111111 3 11 33 3333333333 0 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . ............ .......................... .. . . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ........ . .. .. .......... . . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 33333333333333333333333333 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 222 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 000000000000 00000000000000000000000000 00 0 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 4444 0 0 0 88 5 00000000 2 22 88 5555555555 2 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAAC-GATTTGGTTTNGGAATGGAAAACTTTGG-TCTGAGAAC-GGAAAA--ATGAACGGGTTGAAGGGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC-------------CAAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-GATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTNCATGAGAAC-GAAAC-GA-TTGGTTTNGGAATGGAAAACTTTGG-TCTGAGAAC-AGAAAA--ATGAACGGGTT---GGGAATGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTG-TTCAAAATGAGA----------ATATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA----TTT-----TTTTAAC----GAT---------TT-------TTTGCAATGGATAACCAATCCTTGTACTA-TTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATC-GATTTGGCTTTGGAATGGAAAACTTTGG-TCTGAGAACAAAAAAA--ATGACCAGATTGAAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aGTGAATTGGTAATTTGTTTGAAAACTTTTGTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAAC-
gi|12 : aTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGtctttgatctg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACG-ACTGTTTT-------AAG-GAAAC-GA-ACGGTTTT-AAAT-GAGAAC---GGATC-----GC-TGAACATTATAAAC----------GAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAA------AT---------TTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAA-TTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAAC-GATTTGGTTTGCGAATGAAAA------G-TCTGAGAAC-GGAAAA--ATAAATTGGTT-----GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAA-CTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGA-TTGGTTTGGGAATGGAAAGCTTTGC-TCTGAGAAC-AGAAAC--ATGAACGGGTTAAAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 222 8888888888888888888888888888888888888 1 33333333 11 1 444444444444444444444 2222222 1 222222 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 333 1111111111111111111111111111111111111 22 1 1 0 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 111111 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . ... ..................................... .. . . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... ...... .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 333 7777777777777777777777777777777777777 00 0 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 222222 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTG-AAGGGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TT-------TTTGCAATGGATAACCAATCCTTGTACTA-TTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aGTGAATTGGTAATTTGTTTGAAAACTTTTGTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : aTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAA------AT---------TTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAA-TTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAA-CTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 2 11 3333333 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 0 77 2222222 22 1 1 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . . .. ....... .. . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 0 55 5555555 00 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGATTTA-TTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTG-TTCAAAATGAGA----------ATATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTATTTA-TTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAATTTA-TATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 222 8888888888888888888888888888888888888 1 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 333 1111111111111111111111111111111111111 22 1 1 0 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . ... ..................................... .. . . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 333 7777777777777777777777777777777777777 00 0 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TT-------TTTGCAATGGATAACCAATCCTTGTACTA-TTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aGTGAATTGGTAATTTGTTTGAAAACTTTTGTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : aTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAA------AT---------TTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAA-TTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAA-CTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 2 11 3333333 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 0 77 2222222 22 1 1 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . . .. ....... .. . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 0 55 5555555 00 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGATTTA-TTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTG-TTCAAAATGAGA----------ATATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTATTTA-TTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAATTTA-TATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 222 8888888888888888888888888888888888888 1 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 333 1111111111111111111111111111111111111 22 1 1 0 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . ... ..................................... .. . . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 333 7777777777777777777777777777777777777 00 0 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TT-------TTTGCAATGGATAACCAATCCTTGTACTA-TTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aGTGAATTGGTAATTTGTTTGAAAACTTTTGTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : aTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAA------AT---------TTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAA-TTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAA-CTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 2 11 3333333 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 0 77 2222222 22 1 1 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . . .. ....... .. . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 0 55 5555555 00 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGATTTA-TTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTG-TTCAAAATGAGA----------ATATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTATTTA-TTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAATTTA-TATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 222 8888888888888888888888888888888888888 1 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 333 1111111111111111111111111111111111111 22 1 1 0 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . ... ..................................... .. . . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 333 7777777777777777777777777777777777777 00 0 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGAT-TTATTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTGTT-CAAAATGAGAA----------TATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TT-------TTTGCAATGGATAACCAATCCTTGTACTA-TTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aGTGAATTGGTAATTTGTTTGAAAACTTTTGTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : aTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTAT-TTATTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTTTAA------AT---------TTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAA-TTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAA-CTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAAT-TTATATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
blockSeqs : TAATTGTTAGTGTT G . T TA TT TTTAT ACTGCGTTGAAATAATTCC A T CTA G . T T CA T A AT GGTTACATGTACCTATC GC G AATGGTAACCATCCCAAGT A C T AA TTGAAGAT C T AAA C ATGG T A ATGTCACTTGAGACGGGGACCTA GGA A A G . C . G . T T ACCATTTTCA A A T T T A . T T A AAC GTGGATTTGAACTATGGATAGTCTAGCTTCATNNNNN NN N N C T TTAATAAG T C T GT A G C AATGGGCAACACACGGTATGA A T AGTT A T GC GCTTTGC . TGG AT AC CA T TGT A A . A A AT TGATGATGA C G G T A ATTGCA T TG C A
blockSeqs : TCTTT TGAGATGATTGC . T TG C . C T G A . A ATG . C CCATTCG G C . GG ATTGTC T T AGT G GT . A TTGAAAA AC . T . . TTTTAAATTTACGAAAA AA C G . T A A A T . . G C AACGC T T GCAG . A GG A . GGG A GA TG A . T G . G . T . . G T . . . T . C C
blockSeqs : . . . . . A . . A . . TT . T ACGT T . . . . . . . G . . . TGGAC . . A C T C . . . . . CATGC G A TCAT . T T G . A . . TG T . G A . T A . . T A . . . C . T A
blockSeqs : CAAG A A . . A C . . G A . . . G . T A
blockSeqs : A . . A A . . . T . . T
blockSeqs : C . . . A . . . T .
blockSeqs : G . . . .
blockSeqs : . . .
blockSeqCons :
originalCons : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
finalCons : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAAT-TTATTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA---TTTT-----TTT-AAC----GAT---------TTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAA-TTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA
Alignments
lowQualScore : 55555555555555 1 1 333333 77777777777777777777777777 1 222 1 22 1 11 77777777777777777 11 5555555555555555555555 1 3333333333 1 33333 1 55555555555555555555555 111 1 2222 222 5555555555555 1 4444444444 44444444444 2 11 3333333 33333333 11 1 444444444444444444444 2222222 1 11 111 111 222222222 111111
lowQualScore : 33333333333333 1 5 5 22 22 555555 99999999999999999999999999 0 0 0 3 333 2 0 1 3 33 1 0 0 33 44444444444444444 33 4 8888888888888888888888 1 2 0 0 66 9999999999 0 6 5 777 2 99999 0 3 77777777777777777777777 333 7 1 3 4444 1 111 1 1111111111111 5 1 1111111111 1 1 1 1 1 1 44444444444 1 1 1 0 77 2222222 22 1 1 1 22222222 0 1 1 3 33 0 2 2 0 555555555555555555555 0 1 1 9999 8 1 0 99 0 9999999 0 0 777 77 44 22 1 777 1 1 777 1 7 77 222222222 5 3 1 0 4 0 4 222222 2 77 3 1
lowQualScore : .............. . . . .. .. ...... .......................... . . . . ... . . . . .. . . . .. ................. .. . ...................... . . . . .. .......... . . . ... . ..... . . ....................... ... . . . .... . ... . ............. . . .......... . . . . . . ........... . . . . .. ....... .. . . . ........ . . . . .. . . . . ..................... . . . .... . . . .. . ....... . . ... .. .. .. . ... . . ... . . .. ......... . . . . . . . ...... . .. . .
lowQualScore : 00000000000000 0 0 5 00 00 777777 00000000000000000000000000 7 7 0 2 555 5 0 2 2 22 2 0 2 22 00000000000000000 88 2 2222222222222222222222 2 5 8 0 88 0000000000 2 5 5 555 5 88888 0 2 22222222222222222222222 888 3 0 3 5555 0 000 0 0000000000000 5 0 0000000000 0 0 0 0 0 0 00000000000 0 0 0 0 55 5555555 00 0 0 0 88888888 2 0 0 2 88 0 5 5 6 444444444444444444444 8 4 4 8888 0 4 8 88 2 8888888 0 8 000 00 88 22 0 555 2 2 555 2 3 33 999999999 7 0 1 4 4 7 4 888888 0 99 7 0
consensus : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
Reference ( family-2957 ) : NATGTGCATCACAGTGTTAATTGTTAGTGTTACGNTGTACATACATGTTAGCGCGTTNNACCGTTTGAAATTTNNGCCATATTCT-T-ATGTAT-------ACTGC--------------AAGTAGATCAATACACGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCGTTA-TGATGATTA-TTTTTTTTATCGAAAATAATTTA-TTTTGCGTTTAGATTCGATAAGGGAATGCCCGCATTGATTCAATGA-CAT------ATG--------ACGTTGATTGATG--ATACGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTGAAGAT-ACCCGCGATAAATTCGAGA-G-GNGC-ATAAAGGGAGCCA-------TTGAGAC--------ATAGGGT-AATCCGTGTCAATTCTCCCGTAGACATAAAATANAT-TAATTTGTTTAATTCANAATGAACATTAGATCGCTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTANCATTGTCATTATTTTAAATCTTTTTTGTTTCAAAATNAGAAACCATTTTCATANATTTTCTTCAGCAAACCGNTNTCCCTTTNCAATNTTTAGTAAAAGCTANTACTAAAGTAAGTTCTACTTTACATTTAGNTGGGNTATNTCCTGCCATGTCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTTACGAAAATNNGCAGTGGATAGCCNANCCTTGTACAATTTAAAACATNATGTC-------GAATCAAGAGCAATTANTANAGCCTTCCTTCA--ACTCGACAAAGTG-CAGTGTTGGCCTACAAAGACTCACTGACGCTTGAGTTCCGAATGAC---------CACGC-------GGGAACGAACGGTATTGCATGAGAAC-GAAACGATTTGGTTTNGGAATGGAAAACTTTGGTCTGAGAAC-GGAAAAATGAACGGGTTA-AAGNGAACGGTTTGATGTGGGAACNGAACGGTTC---TTATCGAGATAGAAACGACTCAAATGGTGTA---GTAGTACGCTTTAGGGTCTCTACTATACAATAA-ACCTGC---------ACAT-CCACTGGAAGGATCGCAAGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTTTCCGTAGCTTGGGTAT-CGAC------AAGATAGCTCACAAT--ATTCACCATNCTTTCCAGTCTCACA
gi|1 : ATGTGCATCACAGTGT--------------ACACTGTACATACATGT-AGCGCATTACACCGTTTGAAATTTGGATCATAT------ATGTAT-------ACTGC--------------AAGTAGATCAATACATGTATACGCAATTTAGCAATGAATTATAATGAATTTG-AAAATCATTAATGATGATTAATTTTTTTTATTAAAAAGGATTTA-TTTTGCATTTAGATTCGATAAAGGAATGTTCATATTGATTCAATGA-CAT------A----------ACGTTGATTGGTG--ATATGT-------AC--------GT---ATTTAGCACACATACA-TAAAGGAGACT-TTAAAGAC-ACCCGCGA-AAATTCAAGAAG-GAGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-AATCCGTGTCAATTCTTCCGTAGACATAAAATACAT-TAATTTGTTTAATTCAAAATAAACATTAGATCGTTACCCATAATCATCATCATTATTATAATTATCATCATCATCATCATTACCGGCTATTATCATTGTCATTATTTTAAATCTTTTTTG-TTCAAAATGAGA----------ATATATTTTCTTCAGCAAACCGCTGTCCCTTTACAATATTTAGTAAAAGCTACTACTAAAGTAAGTTTTACTTTACATTTAGATGAAATATTTCCTGCCATATCGTGGTGAATTGGTATTTTGTTTGTA-TTTTTTTAACGATTT-------TTTGCAATGGATAACCAATCCTTGTACTATTTAAAACATAATGTC-------GAATCAAGAACAATTAATAAAGCTTTCCTTCA--ACTCAACAAAGTG-CAGTGTTGGCCTAATAAGACTCACTGACGCTTTAATTCCAAATGAC---------CAAGG-------GGGAACGAATGGTACTGCATGAGAAC-AAATCGATTTGGCTTTGGAATGGAAAACTTTGGTCTGAGAACAAAAAAAATGACCAGATTG-AAGGGAATCGTTTAATGTGAGAACAGAACGGTTC---TTATCGAGATAGAAATGTTTCAAATGGTGTATGGGTAGTACGCTTTAGGGCCTCTATTATACAATAA-ACCTGC---------ACAT-CCACTGGCAGGATCGCAGGACGCTTCATCACAGGAGCAGAACAACT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCAATCTTTCCAGTCTCACA
gi|10 : aTTTAAAATATTATGCC-------AAAATAAGAGCATCTATTACAGCCT-ACTCCAGTAATTGACCATGTGACA-TGTTGACCTACAATGACTGACTGATGCGCGAGTTTCAAAAGAC---------AACGC-------GGGAACGAACAGTTTTAGTTGAGAACAGGAACTCTTTGATCT
gi|12 : agtgaattggtaatttgtttgaaaacttttgtggatttgaactatggatagtctagcttcatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncTCACAGGAGCAGGTTTCTT-GACATTCATTTCCGTAGCTGGGGTAT-GGGCATTGCAAAGA------ACAATTGATT--CCATACAGTCCAGg
gi|13 : attataattgaacaacaactcaccagaggtctggatgcagcctgtcacatgatggcataaggttgatACGCGTAAGTTTCAAATGAC---------CATGC-------AGCAACGA-CTGTTTT-------AAG-GAAACGAAC-GGTTTT--------AAA--------TGAGAAC-GGATCGCTGAACA--TTATAAACGAACAGTTTGATATGGGAATTGAACAGTTC---TTATCGAGAATGAAACGACTCAAATGGTGTA---GTAGTAggtgacattctttaaagagtagtgtagcatagaa
gi|14 : ACTTTGCAATGT-ACCTGTTGATGATGAACAC-CCCCTGACTGTATTACAAGATGATTCATCACATTCACAGA-CATTTTGACATCCCTCTCCGTAACTTGGGTAT-CGAC------A
gi|2 : cATTTTAT-ATGTAT-------ACTGCGTTGAAATAATTCCAAGTAGATCAATGCATGTATATGCAATTTAGCAAAGGATTATAATGAATTTGAAAAATCA-TA-TGATGATTA-TTTTTTTTATCAAAAATTATTTA-TTTTGCATTTAGATTCGATAAAGGAATGGTCATATTGATTCAGTGA-CAT------ATG--------ACGTTGATTGATG--ATAGGT-------AC--------GT---ATTTAGCACACATACA-TAAAAATGACT------------CCGCGA-AAAATCAAGA-ATGGGC-ATAAAGGAAGCCA-------TTGAAA---------ATAGGGT-ACTCCGTGTCAATTCTTCCATATACATTAAATAAAT-CAATTTGT----TTCACAATGAACATTAGATCGCTACC---ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGACTATTAGTATTG-------------TCTTTTTTGTTTCAAAATTAAAAACCATTTTCATAAATTTTCTTCAGCAAACTGATTTCTTTTTTCAATTTTTAGTAAAAGCTAAT-----------TTCTATTTTACATTTAGTTGGGTTATATCCTGTCATGTTGTGGTGAATTGGTATTTTGTTTGTATTTTTTTTAA--ATTTACGAAAATAAGCAGTGGATAGTCCAGCCTTGTACAATTTAAAACATTATGTT-------CAATAAAGAGCAATTAATAAAGTCTTCCTTCA--ACTCAACAAAGTG-TAGTGTTGGCCTACAAAAATTCACTGACCCTTGAATACCGAATGAC---------CAAG--------GGGAACGAACGGCATAGCAGAGGAGC-AAAACGATTTGGTTTGCGAATGAAAA------GTCTGAGAAC-GGAAAAATAAATTGGTT------GAATGGTTTGATGTGGGAACAGAACGGTTCTGTTTATCGAGATAGTAACGGCTCAAATGATGTA---GTGGAACGCTTT-GGGTCTCTACTATACAATAA-ACCTGC---------ACATCCCACT-GAAGGATCGCAAGATGATTCATCACAAGAGCAGAACGATT-GACATTCCTCTCCATAGTTTGGGTAT-CGAC------AAAATAGCTCACAAT--ATTCACCATC--TTCCAGTCTCACA
gi|3 : cACTACACAATAC-ACCTGT---------ACAT-CCAATGGAAGGATCGCAAGACGCCTGATCACAAAAGCAGAACAACT-GACATTTGTTTCCATAGCTAGGGTAT-CGAC------AAGATAGTTGACAAT--AGTCACCATACTTTCCAGTCTCACAt
gi|4 : tacaaatattgttttatataataaaagttctttataaagtgaaatgtgaaaataatagagaaatattgaaactggatcacaattcTATAATAA-ACCTGC---------ACAT-CCGCTTGAAGGATCGCAAGACGCTTCATCACAAGAACATAACAACT-GACATTGGTTTCCATAGTTTGGGTAT-CGAC------AGGACAGCTCGCAAT--ATTTACCATACTTTCCTGACGCACAttctgtaaaattgaatatgatgtaatttaaaacaggataatgcctttctttggcataaaaataggtaactgtgagtaattcatcctcacctgatgggcgtctcctgcacccgtatgcacgatgacagttttcaatgctgcagttgcattctgaacgacaattccatccgaatattgggtatggacaagtcatatcacattccctaccgtaaaatccctcagtgcaacctacaggaacgaaaactaactttaagcaatattcattgtaggtaatgtatatcttatttaatcaccaaatatcttattcttctccatgaaaaaatgcaactggactagaagagtatcttgtttctatttggatgttaatatatacagacgtgtacagttattttctgcttcattccacatatatccactgcagcatactatcccgtcacggctgaaatattagaaacacatatatagaatagtgatttacttccactgattttaaaatttgacaatcagaaatgacaagggctaaatatacaatttgtgatggatgagtgacactatgttttttttttaaatgaacatgatgtaagagtaatacattatgcaatttatatgaaaatcagacttatgttcaggaaagaacaaattaaattagatgatggaatttgaagtgagatatcaacaatttaactgatattgatcagcatgta
gi|4 : ataatACT-GACAATCCCAGCCGAAGCTTGGATACACG-C------AAGGGATCTCACAGT--ttctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgactgacaatcccagccgaagcttggatacacgcaagggatctcacagttcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|6 : ataattataataaacctgcacatccgcttgaaggatcgcaagacgcttcatcacaagaacataacaactgacattggtttccatagtttgggtatcgacaggacagctcgcaatatttaccatactttcctgacgcacattctgtaattatagatataagaagtaatttcagacagacaatacatttctacagcaagaataaaataaactgagaataattaattttcacctgatggacgttttctacacccgtacatgtgatggcagtcttctttgccgcagctgcattctgAACTTAAAACATACCGTTTTAATAAGAATCAAAAGCAATAATTACAGCCTTCCTTCA--CCCTGACAAATTG-CTGTGTTGA-ATACAAAGACTCACTTAAGCTTGAGTTCAGAATGACAATGGGCAACACACGGTATGAGGGAACAAACAGTATTTCATGAGAAA-GAAACGGATTGGTTTGGGAATGGAAAGCTTTGCTCTGAGAAC-AGAAACATGAACGGGTTA-AAGAAAATGATTTGTTGAGGGAACTGAAAGGTTC---TTATCGAAATAGGAACGATTCAAATGGTGTA---GTTGTACGCTTCAGAGTCTCTACTATATAATAC-ACCTGT---------ACAT-CCACTGGAAGAATCACAAGACGCTTCATCACAAAAACAGAAGAACT-GGCATTGCTTTCCATAGGTTGGATAT-CGAC------AAGATAGCTCACAAT--ATTTACCAATCTTTCCAGTCtcctaccgtagaatccatccatgcaacctagagaaaaaaagatgacatgacagagattaaatagatgcattgacattttcattcaaccatcaacacttttacttccatccataaataatttgcaaacgcatttggatattttcattatgaacttgttaccgtctttgtatttggattgctaatatatgcatacgtgtacaatttttcttcgcttcattccatacatatccactacagcatgcctttccgtcaacgctaaaataattttgaattttcattctgtatttgatttgaattagttcaaacaaatgttaaaaactaaataagccataagacaagaatgactaacagagtgttagttttaatcactataacgcaaaagcaatacactgtgtagttaatatctgataagaaatttgttcagggtagaacaatcaatgtaaacgtttctatcgaatgattgttttaacgaacattttatcttatatttatcaacaaatacgattatattgcacattagatatgtta
gi|7 : atattttacgatggaagaaagtATGTACATCACAGTGTTAATTGTTAGTGTTACGGTGTATATA-ATATTAACGCGTTTAACCGTTTGAAATTTTTGCCATATTCT-TTCTGTATTGAGATGATTGC--------------AAATAGATCAATATACATGCATGTAATTTAACATTGAATGATAATTAATTTG-AAAATCGTTA------ATAA-TTTTCTTTGT--AAAATAATATAATTTTGCGTTTAAATCCGAAAAGGGAATACCCGCATTGATTCAATGATCATGGTTACATGTACCTATCATTTTGATAGATGGCACACGTAATGGTAACCATCCCAAGT---ATTCGGCACCCACACATTAAA--AGACT-TTGAAGAT-ACCTGCCATAAGTTGGAGA---GTGCTATCAAGGGAGCCAATGTCACTTGAGACGGGGACCTATAGGGTGGACTCGTGTCAAATCTCCCGTAGAC
gi|8 : TAATACCTGC---------ACAT-CCACTAGATGGATCGCAAGACACTGGATCACAGGAACAGAACAATT-GACATTCCTTTCCATAGTTTGGATAC-CGAC------AAGATtagg
gi|9 : tatcatatccttgcaagaagtaaaacagtactgtcaaaatctgtacttgaagcagggatatggacagttgatagttcaatattgcgcaatgacgaagaatctcctgtaaacaaaagaaaatccagttcttttgcacaagtttgcagaatacataattagaaatgtttttatgtaatctaatttctatcttcatgtgaaacctgtatagcaaaggaaacataggaagagcacgcttaatAACTTG-CAAATCGTTCCTAATCATTA-TTCTACT-AT-GAAAATAATTTA-TATTGCGTTGGAATTTGATAAGGACATACCTGCATTGTTTCAATG----T-------TT--------ATGTTGATTGATG--GTATAT-------CC--------ATTCGACTTTG-AGAGGGATA-TAAAGGAAACCATTG----TCATC--TGATA---TGGAGA------C-ATATAGGG-------------TG-GAC------------------TTCCTGTCAATTATCCTGTAGAC-TAGTATATATGTAAc
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|5 ): TAATTAATTTTCACCTGATGGACGTTTTCTGCACCCGTACTTGTGATGACAGTCTTCTTTACTNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGTCATTCTTTACTGCAGCTGCATTCTGAGACAATCCCAGCGAAGCTTGGATGATGGACAATAAATATCACAGTTTCTACCGTATAGAATCCAATCCATGCAACCTAGAGAAAAAGACGGATGACATGACAAGCGATTAATACTGCAAGAAAGTGTCATCTTCAACCGTCAACAATTTTACTTCTATCCAATAAATGAGTTGGAATGCGAACTGGACATTTCTATTAGAACTTTAATCGTTTTTCATTTGGATTGCTAATGTTTACCCACGTGTACAACTAGTTTCTTCGCTTCATCCCATACATATCCAATGCAGCATACCTTCCCGTCAACCGCTAAAATAATTTTAAAATTTCACTTCTGTAACTGTTTTTTAATATGATTAAACCAATGTTAAAAAACTAAATCAACCATAAGGCTAAGAATGATAACATTTTACTTTAGTTTTATCATATAATGCAAAAACAATACTGGTATAGCTTATATCAGATAAGAAATGTGTTAGAGGTAGACATTGAATTTATTTTTATATAGAAAGACTGTTTCCAACGAAACAAAACATTTTATCTTATATTTATCAACAAATACTAGTATATTGCACATTAGATAGGTCA
Unaligned ( gi|11 ): GCGTTACTTGAGACGGAGACTGATAGTATAGACCCAGTGCAAACACTTCCGTACACTAGTACATGTATACATGTATACCGCTACTCCAGCAGCCCTAAGTGTCTCAATCACTTCATACATGGACCTACTTCTGAAGAAGATACGACAAGCTGAAGTACTAACATGTGAGTAATTCATTTTGATTTTCCAGCACTTT
Unaligned ( gi|15 ): ATACATTCCTCACTCAAGCAGCCCTTAGTGGCTTGATCACTTGACACATGCACCTACTTCTGATGTGGATACAACAACCTGATGCACTAACAACTGCGCAATTCATT
Unaligned ( gi|16 ): GCTACTCAATCGACACTTCGTGTCTCAATCTGCGTATATATATACTTACGTCTGATAAAGATAGCCAAAATCTAAATAGTAAATTTTGATTTTCTAGCACTT
Unaligned ( gi|17 ): TGTGCATTGATGACGAATCTCCGGTAAAGAAAGCAAAATCGAGTTTCGTTTTTCATTTGAGAGATATTGGATTAAAAGTGTTTATCATGTAA