lowQualScore : 111111111111111111111111111111111111111111111111111111 111111111111111111111 111111111111111111111111111111111
lowQualScore : 33 4 6666 111 55555555555555 1 1 1 55 11 33 3 11 11 11 33 22222 22 3 2 222 333333 555555 1111 3 4444444 11 1111 11111 111 11111 1111 111 55555555555555555 11 333333 1 11111 555555555555555 11111111 2222222 1 2222 222 111 1 3333333 11 3333 1 111 11 111 222222 3333 11111 1 55555555 22222222222 111111 22222222 111 55555555555555 11 1111 44444444444444444 666666666 1 111 3333 1 1111 444444444444444444444444444444444444444444444444444444 33333333333333 1 22 222222222222222222222 11 2 22222 11 11 1 333333333333333333333333333333333 222 111 444 1 11 111 2222 444444444444444444 1 111 11 111111 1 111 11111 22222222 11111 2222
lowQualScore : 11 0 0000 222 99999999999999 3 5 3 55 11 00 8 2 11 11 33 66 00000 8 33 8 6 3 8 4 222 8 8 0 777777 222222 7777 0 6 1 1 5 888 6666666 5 5 99 2222 8 00000 5 5 000 77 3 5 5 4 44444 5 5 2222 111 5 22222222222222222 5 9 11 1 222222 77 3 77777 5 0 5 77 333333333333333 11 8 1 99999999 6666666 0 0 1111 888 444 6 2222222 44 3333 0 444 2 8 3 0 1 11 8 444 999999 1 4444 00000 3 4 6 999 77777777 55555555555 999999 11111111 7 222 6 6 00000000000000 6 11 3 5555 99 88888888888888888 5 6 77 2 222222222 0 555 8888 0 4 55 8888 555555555555555555555555555555555555555555555555555555 88888888888888 0 4 33 55 222222222222222222222 66 6 66666 2 2 33 3 00 0 3 2 999999999999999999999999999999999 888 0 666 1 111 1 6 6 0 7 44 333 3 6 7 4444 5 66 555555555555555555 7 7 5 0 666 0 0 66 5 66 5 5 7 000 888 99 5 77 444444 7 5 666 5 2 44444 00000000 66666 5555 6 0
lowQualScore : .. . .... ... .............. . . . .. .. .. . . .. .. .. .. ..... . .. . . . . . ... . . . ...... ...... .... . . . . . ... ....... . . .. .... . ..... . . ... .. . . . . ..... . . .... ... . ................. . . .. . ...... .. . ..... . . . .. ............... .. . . ........ ....... . . .... ... ... . ....... .. .... . ... . . . . . .. . ... ...... . .... ..... . . . ... ........ ........... ...... ........ . ... . . .............. . .. . .... .. ................. . . .. . ......... . ... .... . . .. .... ...................................................... .............. . . .. .. ..................... .. . ..... . . .. . .. . . . ................................. ... . ... . ... . . . . . .. ... . . . .... . .. .................. . . . . ... . . .. . .. . . . ... ... .. . .. ...... . . ... . . ..... ........ ..... .... . .
lowQualScore : 55 0 0000 333 00000000000000 3 0 3 00 00 88 0 0 22 00 22 44 00000 0 00 0 0 2 0 0 000 0 0 6 444444 222222 0000 2 7 0 7 0 888 1111111 0 0 44 4444 7 11111 7 7 000 99 3 7 7 3 33333 7 7 1111 444 7 11111111111111111 7 3 66 4 999999 99 3 33333 7 7 7 99 333333333333333 44 0 4 66666666 0000000 6 6 6666 000 000 6 2222222 22 4444 0 000 8 2 0 6 4 00 0 000 444444 4 0000 55555 3 2 7 333 88888888 00000000000 777777 55555555 3 333 7 7 22222222222222 7 55 0 7777 88 77777777777777777 5 7 77 5 555555555 0 555 0000 0 0 88 8888 888888888888888888888888888888888888888888888888888888 22222222222222 0 0 22 55 000000000000000000000 55 7 55555 5 5 88 0 55 0 2 5 666666666666666666666666666666666 000 8 666 8 333 7 7 7 8 0 22 000 0 7 3 3333 0 44 999999999999999999 0 6 0 0 444 1 1 00 0 99 0 0 1 000 666 33 7 99 444444 1 7 000 7 1 33333 77777777 77777 2222 7 7
consensus : AGAAAAAAATGTTA-GTGGCCAGTGC-CAAAAAACCATAACATAATA-----AT-A---G-TGCCA-TAACTGCATA-CTTATGTTGTTGG--GAA-GTAGAGGGT-AACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-CG-TAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGAGG--TACTCC-AATC-TGAT----TTCCG-CTG-CCCCTCAGTTA-CT---CGCCTTACC------TCCCTTCGT-T-GT-CCCN-ANTTATGGTGC---A-GT-GC-GTTT---CCT--TCCGGCTC-CT-GGATTTCTCG-----GCATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA---T-ATA----ATAT-T-AGCCAGAAAN-CGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTG--GCAT---TCTAN--AAA-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTGTTTAG------GTAAGTACGGC--TTTACGAATTTTG---AAGGGGGAAAAAAATCNCCGCTGTAGGGGGAAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAAC-GATAC-CGCTNAACCAAATTTTCCTGAACATGGACNCCA-ACGGA-AAAT-T-AAA--C----CAAA-----A--A--AGGAA-AG---TAAAACAGCTA-----CATCTACAC-TAGATA-TGATAT------------ACTATGC-AAACTNNCGCANGTATN---CAC-AAACC--AT-T-----TNATG-ANTT-GACNNTTTTCATGG-C-------GGA-ATN-NTATGGC-A-GC-GTNACATAT--GCCTATTTTTATTTTTTGGTA---ATTTANTTACATTTTTTTTTTGC-AA-A-TGAAAAAATTACTTA-A-AGCTTAC----TCTA-TCGGGANAGAAAGTTTAATCNTACGGCTTGTTGCAT--------AAACTAATCGTGTACATGTGCCGNANA--CATGNATAATAAT-GTATTNTAACAAGATGGCTAACCCTGGCGACCG----C----------AACGTACGCACCAGAACAGCATGCAACAATCGAGTAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-AT-ATCTTGCTACAAT-ATCCTAAAANANTTGAAATAAGTGANAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACGGAGAACATTTTTTT----A----TGANCTNAC-CAATTGCTGAT-TTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTC-GA--G-AGGT-TCGCTTATGCTCAA-CCC--GGCAAATTCCGGGA-AAAA-C--ATA---TTGAAC-GTA-AC-A-G-TTNGCAG-----TGTT--------AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
Reference ( gi|1 ) : AGAAAATAATGTTATGTGGCCAATTCCCAAAAAACCATAACATAATA-----ATTA---GTTGCCA-TAACTGAATA-CTTAT--TGTTGG--GAATGTAGAGGGT-A-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTCG-TAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG-G---TACTCCCAATTATGAT----TTCCGTCTG-CCCCTCAGTTA-CT---CGCCTTACC------TCCCTTCGT-T-GT-TCCA-ACTTATGGTGC---A-GT-GC-GTTT---CCT--TCTGGCTC-CT-GGATTTCTCG-----GTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA---T-ATA----ATA--T-AGCCAGAAAA-CGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTG--GTAT---TTTAA--AAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTGTTTAA------GTAAGTATGGC--TTTACGA---TTG---AAAGAGGAAAAAAATTGCTGCTGCGGGT---AATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAAC-AATAC-CGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-T-AA---C----CAAA-----A--A--AGGAA-AG---TAAAACAGCTA-----CATCTACAC-TAGATA-TGATAT------------ACTATGC-AAACTCTCGCATGTATA---CAC-AAACC--AT-T-----TCATGCATTT-GACGGTTTTCATGG---------GGA-ATG-TTATGGC-A-GC-GTTACATAT--ACCTATTTTTATTCTTTTTTATTTATTTATTTATA-TTTTTTTTTGC-AAAAATGAAAAAATTACTTA-ATAGCTTA-----TCTA-TCGAGATAGAAAGTT-AATCATA---------G-AT--------AAATTAA-CGTGTACATGTGCCGCACA--CATGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG----CC-----C----------AA---------CAGAA---CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-AT-ATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT----A----TGAACTGAC-CAATTGCTGAT-TTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTT-GA--G-AGGT-TCGCTTATACTCGA-CCC--GGCAAATTCCGGG--AAAA-C--ATA---TTGAAC-GTA-AC-A-G-TTAGCAG-----TGTT--------AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATA
gi|4 : AGAAAA--ATGTTA-GTGGCCAGT---CAAAAA--CATTACCTAATA-----ATGA---GTTGCCA-TAACTGCATA-CTTATGTTGTTGG--AA--GTAGAGGGT-AACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-CG-TAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG-GG--TACTCC-AATC-TGAT----TTCCG-CTG-CCCCTCAGTTA-CT---CGCCTTACC-------CCCTTCGT-T-GT-CCCC-AATTATGGTGC---A-GT-GC-GTTT---CCT--TCCGGCTC-CT-GGATTTCTCG-----GTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA---T-ATATATTAT---T-AGCCAGAAAT-CGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTG--GCA------TAACTATACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTGTTTAG------GCAAGTCTGGC--TTTACGA---TTG---AAAGGGGAAAAAAA
gi|3 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccAAAAAAATGTTA-ATGGTCAATGC--AAAAAAC-ATAACATAATA-----AT--------GCAA-TAACTGCATA-CTTATGTTGTTGG--AA--GTAGAGGGTGA-CTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTGCCGGTAGACAG-ACTTGCAGGTCATGC-C-G-CTGATTTG-GG--TACTCC-AATCGAGATGTGCTTCCG-CTGACCCCTCAGTTA-CT---CGCCTTACC------T----TCGT-T-GT-GCCACATTAATGGTGC---A-GT-GCCGTTT---CCT--TCCGGCTC-CT-GGATATCTCG-----GTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA---T-A-A----ATATTT-AGCCCAGAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTG--Gaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|2 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaACCATAACACATTACCTAAATTAAATGATGCCAATAACTGCATAACTTATGTTGTTGGAAGAAT-CAGAGGGT-AACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-CG-TAGACAG-ACTGCCAGGTCATGCTCTGACTG-TTTG-GCGATACTCC-AATC-TGAT----TTCCGT-TG-CCC-TCAATTTTCT---CGCCTTACC-------CCCTTCGTATAGT-CCCC-AATTATGGTGCTCCATGTAGC-GTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACTAT-ATATCT-AT---T-AGCCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTTGCAACAC---TATAC--A---AAAAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACGA---TTGTGAAAGGAGGGAAAAAAgt
gi|11 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacacagtaaaaattgtttagtgg--GAA-GTAGAGGTT-AACTGGG-CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-CAACTG-CT-TAGAGAAGACTTGCATGTCATGT--TG-CTG-TGTGAG---AACTCC-AATC-TGGT----TTCTG-CTG-CAACTTCGTTA-CT---CGCCTTACAGTTTTGTCCCCTCGT-T-GTACCCA-AGTT-TGGTGC---A-CT-GC-GTTT---GCT--TCTGGCTC-CT-GGATTTCTTG-----GCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA---TAATT----GTAT-T-AGCCAGAAAT-CCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTG--GTATAACTCTAT--AAA------ATG-CGAGGAAATATT---AG---GCATTGTaaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|12 : agccagtactgctgtagttgtgtagttc--GAA-GTAGAGGTT-AACTGG--CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-CT-TAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGAG---AACTCC-AATC-TGGT----TTCTG-CTG-CAACTTCGTTA-CT---CGCCTTACAGTTTTGTCCCCTCGT-T-GTACCCA-AGTT-TGGTGC---A-CT-GC-GTTT---GCT--TCTGGCTC-CT-GGATTT-TTG-----GCATG-G-TTC----GG-----TGAAGCAG-AAATAA------ATA----ATGT-T-AGCCAG-AAT-CCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTG--GTATAACTCTAT--AAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|18 : agccagtactgctgtagttgtgtagttc-CTCCT-AGTTG-CTTTTCGCTTTTGC------CCCCTT------GT-GCCC-TCTTTGGGTGC---C-GG-TC-GCTC---CCT--ACAAACTC--T-GGCTTTC-CG-----GCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAAAC-T-AT-----AT---T-AGTAAG-AAT-CAAATAAC------ATTACGTAAT
gi|8 : gcgagcagctctggcctggcctctgttgtcgcatcaCAGTTA-CT---CGCCTTACC-------CTCTTCGT-T-GT-CCCC-AATTATGGTTC---A-GT-GC-AGTT---CCT--TCCGGCTC-CT-GGATTTCTCG-----GTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA---T-ATT----ATA--TTAGCCAGAAAA-CGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTG--GCAT------AACTATACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTGTTTAG------GTAAGTATGGC--TTTACGA---TTG---AAAGGGGAAGA---TTACTGCTGTAGGG---AATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATC-GATAC-CGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-T-AAA--C----CAAA-----A--A--AGCAA-AG---TAAAACAGCTA-----CATCTACAC-TAGATA-TGATAT------------TCTATGC-AAACTCCGGCATGTATA---CAC-AAACC--AT-T-----TCGTGCATTT-GACGGTTTTCATTG---------GG
gi|17 : GTTA-CT---CGCCTTACC-------CCCTTCGT-T-GT-GCCA-Ata
gi|17 : AACA-AACAG-GTTG--GTAT---TTTAA--AAAAAAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|6 : gttactcgccttacccccttcgttgtgccaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATATTTAG------GTA--CACGA----TTAAGAATTTTG---AAGG-GGAAA-----CCCCGCTATCGGTGGAAAT-GAACCCTG---GTCGCCCATTTGCTAAGCTGAAAC-GATAC-CACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-C-AAACCT----CAAACCTCTA--ACCACGAA--G---TAAAACAG--A-----CA-CTAC---TAGATA-T-ATGT------------A-TATGC-AAACTGACGCAGGTATT---CACCAAACCTAAG-T-----TGATA-AGTT-GACCCTTTTCATGGACCTTAGTTGGA-ATT-GTATGGC----C-GTAAC--AT--A--TGGGTCTATTTTTTGGTA---AT--AATTACA-T--------GC-A-------------TACTTA----GGTGA-----TCTA-TCCGGAAAGAAAGTTTAATCCTACGGCTTGTTGCAT--------AA-CTAATCGGGTAC-----CCGAAAA--CATGCATAG-AAT-GTATTCTAACAAGAT-GCTAACCCTGGCGACT-----C----------AACGTACGCACCAGAACAGCATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACAT-ATAT-AA-ATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATA-TAAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACA------T----AAGCGTGATATTAC-CAATTGCTGATGTTTTTC----AG-------TTCTCATTAGTGGTGTTC-GA--G-TGAT-TCGCTTATGCTCAA-CCG--GGTAAATTCCGGG--AAAA-C--A------TGAACTATA-AG-ATG-TTTGCAG-----TGTC--------AAATCTACA-----TATTT--GCAGA-CAATCT
gi|5 : gTATATTTAG------GTA--CACGA----TTAAGAATTTTG---AAGG-GGAAA-----CCCCGCTATCGGTGGAAAT-GAACCTTG---GTCGCCCATTTGCTAAGCTGAAAC-GATAC-CACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-C-AAACCT----CAAA-----C--C--ACGAA--G---TAAAACAG--A-----CA-CTAC---TAGATA-T-ATGT------------A-TATGC-AAACTGACGCAGGTATT---CAC-AAACCTAAG-T-----TGATA-AGTT-GACCCTTTTCATGG---------tt
gi|20 : gAAAAATCGCTGTTGCAGGG---AATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAAC-GATAC-CGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAAA---C----CAAA-----A--A--AGGAA-CG---TAAAACAGCTA-----CATCTACAC-TAGATA-TGAaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|7 : TGCTGGAGGG---AATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATACACA--CAACCAAATTTATCT----AT-GACTTCA-A-AGA-TAAT-T-AAA--C----CAAA-----A--A--AGCAA-AG---TAAAACAGC-A-----CATCTACAC-TAGATA-TGATAT------------ACTATGCCAAACTCCCGCATGTATA---CA----------T-T-----TCATGCATTT-GAAGGTTTTGATTG---------GTA-ATG-TTATGGCAA-GC-GTTACATAG--GCCTATTTTT
gi|13 : tTAGATTCCA-ATGGACAAATAT-AAGAACTATGCAAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTC-ACACACAGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC--AACC--ATATATAAATTATGAGCTTAGATAGTTTT-ATGGTC-------GCACATGTTTATGGC-ACGC-GTTA-ATAT--ACCTATT-----------------ATTTATTTATATTTTTTTTTTGCTAATAATGAAGAAATTACTTA-A-AGCTTAC----TCTATTCGAGATAGAAAGTT--ATCATA---------G-AT--------AAAtgtgccaaataaaaatttacttaagagcttatctatcgagatagaaagttaatataaggtttgttgccaaattaacgtgtacatgtgccgcacacacatgaataataatagtttgtaacaagatggctaaccctgccgattccaacggagcaaacagaacatgcacaatcgaatggatatcagtacgatttcttgccatcgacagttaaaataatatattcttgctacaatatcctaaaata
gi|5 : gTGG-ANACTGACGCAGGTATT---CAC-AAACC------------TA---AGTT-GACCCTTTTCATGGACCTTAGTTGGG-ATT-GTATGGC----CTGTAACATATGGGTCTATTTTTgttttgttgcaacatagcgtttgtatatg
gi|7 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTTTTTTGTGC-CAAA-T-AAAAATTTACTTA-AGAGCTTA-----TCTA-TCGAGATAGAAAGTT-AAT-ATAA--------G-GTTTGTTGCCAAATTAA-CGTGTACATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTG----CCGATT-CCAACGGAGCAAA---------CAGAA---CATGC-ACAATCGAATGGATATCAGTACGATTTC-TTGCCATCGACAGTTAAAATAATAT-AT--TCTTGCTACAAT-ATCCTAAAATAtggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|5 : ttgctggagggaatcgaactccgatcgtcgcccagttgctaatccagatcgaatacacacaaccaaatttatctatgacttcaaagataattaaaccaaaaaagcaaagtaaaacagcacatctacactagatatgatatactatgccaaactcccgcatgtatacatttcatgcatttgaaggttttgattggtaatgttatggcaagcgttacataggcctaTTTTTTG--------GTAATAATTACATGCATA-CTTACGTGATCTA-TCGGGAAAGAAAGTTTAATCCTACGGCTTGTTGCAT--------AA-CTAATCGTGTAT-----CCGAAAA--CATGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGCGACT-----C----------AACGTACGCACCAGAACAGCATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-AA-ATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACA------T----AAGCGTGATATTAC-CAATTGCTGATGTTTTTC----------AGTTTCTCATTAGTGGTGTTC-GA--G-TGAT-TCGCTTATGCTCAA-CCG--GGTAAATTCCGGG--AAAA-C--A------TGAACTATA-AG-ATG-TTTGCAG-----TGTC--------AAATCTACA-----TATTT--GCAGA-CAATCT
gi|10 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctaTACATGTGTCGCACA--CATGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG----CC-----C----------AG---------CAGAA---CATGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-AT-ATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT----A----TAAACTGGC-CAATTGCTGAT-TTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTT-GA--G-AGGT-TCGCTTATGCTCGA-CTC--AGCAAATTCCGGGAAAAAA-C--ATA---TTGAAC-GTA-AC-A-G-TTAGCAG-----TGTT--------AAATCTACA-----TATTT--A-AGA-CAAGCTtt
gi|9 : AAAATGGCCAATCATG----CCGTACTC----------GT---------CAGAA---C-TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAAAT--TTAAGATAATTCAAAGT-TTTTAC-TTAAAGGAC----TTGATAAACCCATATGTA-TACGGATACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGAT-ATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTC-GA--G-A--------------------------CACATTCCGGGA-AAAA-C--ATAACCATGAACAGTA-ACGG-G-TTTGCAG-----TGTT--------AAATCTAC
gi|14 : ttttttgtttaattggtaacatacttagctgatttatgagggtaccaagttaaccctactgctattcctaagtaactaagtaatcatgtacccgacaacctatgaTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-AT-ATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAACA-TTTTTT----A----TGAACTAAC-CAATTGCTGAG-GTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTC-GA--G-AGGT-TCGCTTATGCTCAA-CCC--GGCAAATTCCGGGA-AAAA-C--ATA---TTGAAC-GTA-AC-A-G-TTAGCAG-----TGTT--------AAATCTACA-----TATTT--A-AGA-CAAGCTCAAAT
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAACATTTTTC-----A----TGATCTCACACAATTGCTGAT-TTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTT-GA--G-AGGT-TCGCTTATGCTC-A-CCC--GGTAAATTCCGGG--AAAAGC--ATA---TTGAAC-GTA-AC-A-G-TTAGCTG-----TGTT--------AAATATACA-----TATTTA-A-AGA-CAAGCTTCAATA
gi|23 : ATTAAATGAC----TTGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT----A----TG-ACTGAC-CAGTTGCTGAT-TTTTTCCCCAACAGGAAGTTTCTtgtg
gi|22 : AAAGCCATATTTC-TACAGAGAATATTTTTTC----T----TCATCTCAC-CAATTGCTGAT-TTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTT-GA--G-AGGT-TCGCTTATGCT
gi|21 : GTATTTTGATTGCAGGTATCGCTTATGCTCAAACCCAAGGTACATTCGGGA--AAAG-CCTATA---TTGAAC-GTACACTA-GATTATCGACTGTCTGTTATATTCAAAAATCTACACAGCGTATTTAGA-AGATCAAGCTTA
4 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 222222 1 11 3333333 1 222 22 11111 11 22 1111 4444444 1 11 11111 1111 1111111 222222 1 11111 3333 11 11111111 111111 111 222 1 1111 111 111 4444 1 2222 11111111111 111 2222222 33333333333333 1111 33333333333 1 777777777 111 22 2222222222222222222222222222222222222222222222222222222222 333 2 1 11111 2222 2 1 6666666666666666666 1111 2222 333333333333 11 1 2222222222222 111 11111 2222
lowQualScore : 111 6 222222 3 5 4 3 33 8888888 6 3 6 6 444 6 77 99 44 66666 6 6 6 3 6 99 66 6 6 44 7 6 888 4444 6 5 0 4 777 2222222 4 4 3 1 1 00 888 5 5 5 888 66 5 5 2 22222 5 5 0000 88 5 0000000 66 5 5 5 5 3 5 888888 66 1 33333 5 5 2 3333 66 00 6 33333333 999999 7 0 555 111 99 8 0 1 0 1111 6 111 0 6 1 444 4444 4 11 1 6 5 5 77 0000 77 88888888888 77 000 3333333 5 5 5 4 88888888888888 5 22 1 1111 77 22222222222 3 7 1 77 22 0 111111111 8 000 66 8 1 5555555555555555555555555555555555555555555555555555555555 111 1 6 1 5 1 66666 6 2 3 7 4444 0 0 99 7 1 1 1 99 1 1 6 3 3 7777777777777777777 9999 2 5 5 5 0 5 3 1 1 5 5 1111 3 44 0 0 4 555555555555 5 1 4 1 55 1 3 4 5 0 66 44 66 999999 5 7777777777777 111 1 888 44444 0000 5
lowQualScore : ... . ...... . . . . .. ....... . . . . ... . .. .. .. ..... . . . . . .. .. . . .. . . ... .... . . . . ... ....... . . . . . .. ... . . . ... .. . . . ..... . . .... .. . ....... .. . . . . . . ...... .. . ..... . . . .... .. .. . ........ ...... . . ... ... .. . . . . .... . ... . . . ... .... . .. . . . . .. .... .. ........... .. ... ....... . . . . .............. . .. . .... .. ........... . . . .. .. . ......... . ... .. . . .......................................................... ... . . . . . ..... . . . . .... . . .. . . . . .. . . . . . ................... .... . . . . . . . . . . . .... . .. . . . ............ . . . . .. . . . . . .. .. .. ...... . ............. ... . ... ..... .... .
lowQualScore : 000 5 888888 2 0 0 0 88 6666666 7 3 7 7 222 7 77 22 77 77777 7 7 7 5 7 22 00 7 7 77 3 7 333 2222 7 7 2 4 888 7777777 4 4 3 0 0 11 888 0 0 0 888 99 0 0 5 55555 0 0 6666 22 0 9999999 99 0 0 0 0 2 9 888888 99 4 66666 0 0 7 6666 00 77 7 33333333 222222 3 7 888 555 22 4 6 0 4 8888 7 777 7 7 0 777 0000 0 44 4 3 7 7 99 0000 99 99999999999 11 000 4444444 0 7 7 3 77777777777777 7 00 0 0000 11 99999999999 0 1 0 99 00 7 444444444 0 000 66 0 0 6666666666666666666666666666666666666666666666666666666666 888 8 7 0 5 0 77777 7 5 2 3 6666 4 6 22 3 0 0 0 22 0 3 7 2 3 2222222222222222222 0000 2 0 7 7 7 7 0 0 0 7 0 2222 2 66 7 1 6 333333333333 3 0 4 9 00 1 4 4 0 1 99 44 99 222222 0 5555555555555 111 0 888 33333 3333 7
consensus : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGG--GAA-GTAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTTACC-------CCCTTCGT-T-GT-CCCAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--T-A-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTATA--NCTATAAA-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTGTNGGGGG-AATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTATT-CTATTTTTTGGTA---ATTTANTTACATTTTTT-TTTGC--A--AATGAAAAAATTACTTAA-AGCTTA-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-CGACT-CAACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
Reference ( family-2950 ) : AGAAAAAAATGTT-A-GTGGCCAGTGCC-AAAAAACCATAACATAA--TAA-T-AGT-GCCA-TAACTGC-ATA-CTTATGTTGTTGG--GAA-GTAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTTACC------TCCCTTCGT-T-GT-CCCNANTT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGCATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--T-A-TTAG-CCA-GAAANCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCAT---TCTANAAA-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCNCCGCTGTAGGGGGAAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTNAACCAAATTTTCCTGAACATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTNNCGCANGTAT---NCAC-AAACC--AT-T-----TNATG-ANTT--GACNNTTTTCATGG--------CGGA-AT-NNTATGGCA-GC-GTNACATATGCCTATTTTTATTTTTTGGTA---ATTTANTTACATTTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTTACTCTA-TCGGGANAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNANACA--TGNATAATAAT-GTATTNTAACAAGATGGCTAACCCTGGCGACCGCAACGTACGCACCAGAACAG--CATGCAACAATCGAGTAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAANANTTGAAATAAGTGANAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
gi|1 : AGAAAATAATGTT-ATGTGGCCAATTCCCAAAAAACCATAACATAA--TAA-TTAGTTGCCA-TAACTGA-ATA-CTTAT--TGTTGG--GAATGTAGAGGGTA-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTC--GTAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG---GTACTCCCAATTAT-GAT----TTCCGTCTG-CCCCTCAG-TTACT---CGCCTTACC------TCCCTTCGT-T-GT-TCCAACTT-ATGGTG---CA-GT-G-CG---TTTCCT--TCTGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--T-A--TAG-CCA-GAAAACGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTAT---TTTAAAAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAAGTAAGTATGGC--TTTACGA---TTGAA--AGAGGAAAAAAATTGCTGCTGC---GGGTAATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAACAA-TACCGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-T-A--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCTCGCATGTAT---ACAC-AAACC--AT-T-----TCATGCATTT--GACGGTTTTCATGG---------GGA-AT-GTTATGGCA-GC-GTTACATATACCTATTTTTATTCTTTTTTATTTATTTATTTATA-TTTTTTTTTGCAAA--AATGAAAAAATTACTTAATAGCTTA-TCTA-TCGAGATAGAAAG-TTAATCAT-----A-G---------ATAA---ATTAA-CGTGTA--CATGTGCCGCACACA--TGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG----CC-CAA---------CAGAA-----CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-A-TATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT-----A----TGAACTGAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATACTC-GACCC--GGCAAATTCCGGG--AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATA
gi|10 : TA--CATGTGTCGCACACA--TGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG----CC----------CAGCAGAACA-----TGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-A-TATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT-----A----TAAACTGGC-CAATTGCTGATTTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-GACTC--AGCAAATTCCGGGAAAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCT
gi|11 : -GCCA-GTACTGCTGTA-GTTGTGTAGTTCG---AA-GTAGAGGTTAACTGGG-CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-CAACTG-C--TTAGAGAAGACTTGCATGTCATGT--TG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTTACAGTTTTGTCCCCTCGT-T-GTACCCAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTTCTT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA-TAATT-G--T-A-TTAG-CCA-GAAATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|12 : a-GCCA-GTACTGCTGTA-GTTGTGTAGTTCG---AA-GTAGAGGTTAACTGG--CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-C--TTAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTTACAGTTTTGTCCCCTCGT-T-GTACCCAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTT-TT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAATAA----ATA-A--T-G-TTAG-CCA-G-AATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|13 : aTAGATTCCA-ATGGACAAATATAAGAACTATGC--AAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTC-ACACACAGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC--AACC--ATATATAAATTATG-AGCTTAGATAGTTTT-ATGGT-------CGCACATGTTTATGGCACGC-GTTA-ATATACCTATT-----------------ATTTATTTATATTTTTTTTTTGCT-AATAATGAAGAAATTACTTAA-AGCTTACTCTATTCGAGATAGAAAGTT--ATCATAGATAAAGTTTTGTTGCA
gi|14 : gTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTT------A----TGAACTAAC-CAATTGCTGAGGTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATacatagcgtttgtatatg
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTC------A----TGATCTCACACAATTGCTGATTTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-A-CCC--GGTAAATTCCGGG-AAAAGC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCTGTGTT---AAATATACA-----TATTTA-A-AGA-CAAGCTTCAATA
gi|17 : G-TTACT---CGCCTTACC-------CCCTTCGT-T-GT-GCCAAtgtg
gi|17 : AACA-AACAG-GTTGGTAT---TTTAAAAA-AAAAgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|18 : gttactcgccttacccccttcgttgtgccaagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CTCCT-AG-TTGCTTTTCGCTTTTGC------CCCCTT------GTGCCCTCTTT-G-GGTG---CC-GG-T-CG---CTCCCT--ACAAACTC--T-GGCTTTC-C-----GGCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAA---ACT-A--T-A-TTAG-TAA-G-AATCAAATAAC------ATTACGTAATa
gi|2 : gcgagcagctctggcctggcctctgttgtcgcatcaAGTAAAAATTGTTTA-GTGG-----ACC-ATAACAC-ATTACCTAAATTAAAT-GAT-GCCAATAACTGC-ATAACTTATGTTGTTGGAAGAA-TCAGAGGGTAACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-C--GTAGACA-GACTGCCAGGTCATGCTCTGACTG-TTTGGCGATACTCC-AATC-T-GAT----TTCCG-TTG--CCCTCAATTTTCT---CGCCTTACC-------CCCTTCGTATAGT-CCCCAATT-ATGGTGCTCCATGTAG-CGTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACT-ATATATCT-A-TTAG-CCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTTGCAAC---ACTATACA-AAAAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACG-ATTGTGAAAGGAGGGAAAAAAA
gi|20 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacacAAAAATCGCTGTTGCAGGG---AATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAACGA-TACCGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-CG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGAaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|21 : AGGTATCGCTTATGCTCAAACCCAAGGTACATT-CGGG-AAAAGCCTATA---TTGAAC-GTACACTAGATTATCGAC-T-GTCTGTTATATTCAAAAATCTACACAGCGTATTTAGA-AGATCAAGCTTA
gi|22 : cgtattttgattgcAAAGCCATATTTC-TACAGAGAATATTTTTTC-----T----TCATCTCAC-CAATTGCTGATTTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTTGAGAGGT-TCGCTTATGCT
gi|23 : ATTAAATGACT----TGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT-----A----TGA-CTGAC-CAGTTGCTGATTTTTTCCCCAACAGGAAGTTTCT
gi|3 : AAAAAAATGTT-A-ATGGTCAATGC--AAAAAAC-ATAACATAA--TAA-T-----GCAA-TAACTGC-ATA-CTTATGTTGTT-G--GAA-GTAGAGGGTGACTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTG-CCGGTAGAC-AGACTTGCAGGTCATGC-C-G-CTGATTTG--GGTACTCC-AATC-GAGATGTGCTTCCG-CTGACCCCTCAG-TTACT---CGCCTTA----------CCTTCGT-T-GT-GCCACATTAATGGTG---CA-GT-GCCG---TTTCCT--TCCGGCTC-CT-GGATATCTC-----GGTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA-T-A-A-A--T-ATTTAGCCCA-GAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTGG
gi|4 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaAGAAAAATGTT-A-GTGGCCAGT--C-AAAAA--CATTACCTAA--TAA-TGAGTTGCCA-TAACTGC-ATA-CTTATGTTGTTGG---AA-GTAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG--GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTTACC-------CCCTTCGT-T-GT-CCCCAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATATA--TTA-TTAG-CCA-GAAATCGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTGGCATA--ACTAT-AC-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGCAAGTCTGGC--TTTACGA---TTGAA--AGGGGAAAAAAAgt
gi|5 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGGAAA------CCCCGCTATCGGTGGAAAT-GAACCTTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--ACCT--C--AAA-----C--C--ACG-A-AG---TAAAACAG-------ACA-CT--AC-TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCAC-AAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGG--------aaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|5 : gTGG-ANACTGACGCAGGTAT---TCAC-AAACC--------------TA-AGTT--GACCCTTTTCATGGACCTTAGTTGGG-AT-TGTATGGC---CTGTAACATATGGGT----CTATTTTTTGGTA---AT--AATTACAT---------GC--A-------------TACTTA----CGTGATCTA-TCGGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGTGTA--T-----CCGAAAACA--TGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGCGACT-CAACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-A-AATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTTTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|6 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGGAAA------CCCCGCTATCGGTGGAAAT-GAACCCTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--AC----CTCAAACCTCTA--ACCACGAA--G---TAAAACAG-------ACA-CTAC---TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCACCAAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGGACCTTAGTTGGA-AT-TGTATGGC---C-GTAACATATGGGT----CTATTTTTTGGTA---AT--AATTACAT---------GC--A-------------TACTTA---GGTGA-TCTA-TCCGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGGGTA--C-----CCGAAAACA--TGCATAG-AAT-GTATTCTAACAAGATG-CTAACCCTGGCGACT-CAACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATA-TAT-A-AATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATAT-AAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTT-CTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTt
gi|7 : gGGAGGGAATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATAC-ACACAACCAAATTTATCT----ATG-ACTTCA-A-AGA-TAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGC------ACATCTACAC-TAGAT-ATGATAT------------ACTATGCCAAACTCCCGCATGTAT---ACA----------T-T-----TCATGCATTT--GAAGGTTTTGATTG---------GTA-AT-GTTATGGCAAGC-GTTACATAGGCCT------ATTTTTTG-------------TGC------------C--A--AAT-AAAAATTTACTTAAGAGCTTA-TCTA-TCGAGATAGAAAGTT-AAT-AT-----AAGGTTTGTTGC-CAA---ATTAA-CGTGTA--CATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTGCCGATTCCAACGGA-GCA----AACAGAACATGC-ACAATCGAATGGATATCAGTACGATTTC-TTGCCATCGACAGTTAAAATAATAT-A-T-TCTTGCTACAAT-ATCCTAAAATAt
gi|8 : ttgctCAG-TTACT---CGCCTTACC-------CTCTTCGT-T-GT-CCCCAATT-ATGGTT---CA-GT-G-CA---GTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATT-A--T-A-TTAG-CCA-GAAAACGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATA--ACTAT-AC-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTATGGC--TTTACGA---TTGAA--AGGGG---AAGATTACTGCTGTAGGG---AATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATCGA-TACCGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------TCTATGC-AAACTCCGGCATGTAT---ACAC-AAACC--AT-T-----TCGTGCATTT--GACGGTTTTCAT
gi|9 : TTTTTTGTTT----A--ATTGGTAACAT-ACTTA---GCTGATT-TA-TGAGGGTACCAAGTT-AACCCT-----ACTGCT-ATTCC-TAAGTAACTAA----GTAATCATGTACCCGACA-A--CCTATGA---------------AAAATGGCCAATCATG-------C--CGTACTCGTCAGAAC------TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAA--ATTTAAGATAATTCAAAGT-TTTTAC-TTAAAGGACT----TGATAAACCCATATGTA-TACGGAT-ACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGATATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTCGAGA--------------------------CACATTCCGGG-AAAAAC--ATAACCATGAACAGTA-------------ACGG-GTTTGCAGTGTT---AAATCTACtgggta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 1 11 3333333 11 333 22 11111 11 22 1111 2222222 11 11111 1111 1111111111 222222 1 11111 1111 11111111 111111 111 222 1111 1 111 111 111 2222 1 2222 11111111111 111 2222222 33333333333333 1111 33333333333333333 777777777 22 0000000000000000000000000000000000000000000000000000000000000 333 1 11111 2222 2 1 55555555555555555555 11111 2222 333333333333 11 11 1 2222222222222 111 11111 2222
lowQualScore : 111 6 0 9999 3 5 1 1 33 8888888 6 44 6 222 6 77 99 44 66666 6 6 6 3 6 99 7 66 6 6 44 7 6 888 4444 6 5 0 4 777 4 8888888 4 555 8 4 4 0 11 888 5 5 5 888 66 5 5 2 22222 5 5 0000 88 5 5555555555 5 5 5 3 3 888888 66 1 33333 5 0 5 0 7 6666 7 6 33333333 999999 7 0 555 111 99 8888 3 666 111 0 6 1 444 8888 4 11 1 6 5 5 77 0000 77 88888888888 77 000 3333333 5 5 5 4 88888888888888 5 11 1 1111 77 33333333333333333 0 77 33 0 111111111 8 999 66 8 1 6666666666666666666666666666666666666666666666666666666666666 111 6 6 6 5 1 66666 6 2 3 7 4444 0 0 99 7 1 1 99 1 1 6 3 2 44444444444444444444 55555 7 5 5 5 0 5 3 1 1 5 5 1111 3 44 0 0 4 555555555555 5 1 4 1 55 1 3 4 22 66 44 66 999999 5 7777777777777 111 1 888 44444 0000 5
lowQualScore : ... . . .... . . . . .. ....... . .. . ... . .. .. .. ..... . . . . . .. . .. . . .. . . ... .... . . . . ... . ....... . ... . . . . .. ... . . . ... .. . . . ..... . . .... .. . .......... . . . . . ...... .. . ..... . . . . . .... . . ........ ...... . . ... ... .. .... . ... ... . . . ... .... . .. . . . . .. .... .. ........... .. ... ....... . . . . .............. . .. . .... .. ................. . .. .. . ......... . ... .. . . ............................................................. ... . . . . . ..... . . . . .... . . .. . . . .. . . . . . .................... ..... . . . . . . . . . . . .... . .. . . . ............ . . . . .. . . . .. .. .. .. ...... . ............. ... . ... ..... .... .
lowQualScore : 000 5 8 5555 2 0 0 0 88 6666666 7 00 7 555 7 77 22 77 77777 7 7 7 5 7 22 3 00 7 7 77 3 7 333 2222 7 7 2 4 888 4 9999999 4 333 9 4 4 8 55 888 0 0 0 888 99 0 0 5 55555 0 0 6666 22 0 6666666666 0 0 0 2 6 888888 99 4 66666 7 7 7 3 5 7777 3 7 33333333 222222 3 7 888 555 22 1111 2 555 777 7 7 0 333 3333 0 44 4 3 7 7 99 0000 99 99999999999 11 000 4444444 0 7 7 3 77777777777777 7 77 3 0000 11 33333333333333333 7 99 77 7 444444444 0 222 66 0 4 8888888888888888888888888888888888888888888888888888888888888 888 7 7 7 5 0 77777 7 5 2 3 6666 4 6 22 3 0 0 22 0 3 7 2 5 77777777777777777777 88888 3 0 7 7 7 7 0 0 3 7 0 2222 2 66 7 1 6 333333333333 3 0 4 9 00 1 4 4 44 99 44 99 222222 0 5555555555555 111 0 888 33333 3333 7
consensus : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGG---AA-GTAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATTA-TGGTG---CA-GT-GC-G---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTATAACTATANA-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTGC-GGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
Reference ( family-2950 ) : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGG--GAA-GTAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATTA-TGGTG---CA-GT-GC-G---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTATANCTATAAA-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTGTNGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
gi|1 : AGAAAATAATGTT-ATGTGGCCAATTCCCAAAAAACCATAACATAA--TAA-TTAGTTGCCA-TAACTGA-ATA-CTTAT--TGTTGG--GAATGTAGAGGGTA-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTC--GTAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG---GTACTCCCAATTAT-GAT----TTCCGTCTG-CCCCTCAG-TTACT---CGCCTT-AC-------CTCCCTTCGT-T-GT-TC-CAACTTA-TGGTG---CA-GT-GC-G---TTTCCT--TCTGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-T-AG-CCA-GAAAACGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTAT-TTTAAAAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAAGTAAGTATGGC--TTTACGA---TTGAA--AGAGGAAAAAAATTGCTGCTGC--GGGTAATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAACAA-TACCGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-TAA---C----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCTCGCATGTAT---ACAC-AAACC--AT-T-----TCATGCATTT--GACGGTTTTCATGG---------GGA-AT-GTTATGGCA-GC-GTTACATATACCTATTTTTATTCTTTTTTATTTATTTATTTATA-TTTTTTTTTGCAAA--AATGAAAAAATTACTTAATAGCTT-A-TCTA-TCGAGATAGAAAG-TTAATCAT-----A-G---------ATAA---ATTAA-CGTGTA--CATGTGCCGCACACA--TGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-----CCC-AA---------CAGAA-----CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-A-TATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT-----A----TGAACTGAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATACTC-GACCC--GGCAAATTCCGGG--AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATA
gi|10 : TA--CATGTGTCGCACACA--TGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG-C-----------------CCAGCAGAA--CATGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-A-TATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT-----A----TAAACTGGC-CAATTGCTGATTTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-GACTC--AGCAAATTCCGGGAAAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCT
gi|11 : -GCCA-GTACTGCTGTA-GTTGTGTAGTTCG---AA-GTAGAGGTTAACTGGG-CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-CAACTG-C--TTAGAGAAGACTTGCATGTCATGT--TG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-GC-G---TTTGCT--TCTGGCTC-CT-GGATTTCTT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA-TAATT-G--TA-TTAG-CCA-GAAATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTGGTATAACTCTATA-AA---ATG-CGAGGAAATATT---AG---GCATTGT
gi|12 : a-GCCA-GTACTGCTGTA-GTTGTGTAGTTCG---AA-GTAGAGGTTAACTGG--CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-C--TTAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-GC-G---TTTGCT--TCTGGCTC-CT-GGATTT-TT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAATAA----ATA-A--TG-TTAG-CCA-G-AATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTGGTATAACTCTATA-AA---ATG-CGAGGAAATATT---AG---GCATTGT
gi|13 : aTAGATTCCA-ATGGACAAATATAAGAACTATGC--AAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTC-ACACACAGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC--AACC--ATATATAAATTATG-AGCTTAGATAGTTTT-ATGGT-------CGCACATGTTTATGGCACGC-GTTA-ATATACCTA-TT----------------ATTTATTTATATTTTTTTTTTGCT-AATAATGAAGAAATTACTTAA-AGCTT-ACTCTATTCGAGATAGAAAGTT--ATCATAGATAAAGTTTTGTTGCA
gi|14 : gTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTT------A----TGAACTAAC-CAATTGCTGAGGTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATacatagcgtttgtatatg
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTC------A----TGATCTCACACAATTGCTGATTTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATGCTC--ACCC--GGTAAATTCCGGG-AAAAGC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCTGTGTT---AAATATACA-----TATTTA-A-AGA-CAAGCTTCAATA
gi|17 : G-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-GC-CAAtgtg
gi|18 : -CTCCT-AG-TTGCTTTTCGCTTTTGC-------C-CCCTT-GT---GC-CCTC---TTT-GGGTG---CC-GG-TC-G---CTCCCT--ACAAACTC--T-GGCTTTC-C-----GGCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAA---ACT-A--TA-TTAG-TAA-G-AATCAAATAAC------ATTACGTAATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|2 : gcgagcagctctggcctggcctctgttgtcgcatcaAGTAAAAATTGTTTA-GTGG-----ACC-ATAACAC-ATTACCTAAATTAAAT-GAT-GCCAATAACTGC-ATAACTTATGTTGTTGGAAGAA-TCAGAGGGTAACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-C--GTAGACA-GACTGCCAGGTCATGCTCTGACTG-TTTGGCGATACTCC-AATC-T-GAT----TTCCG-TTG--CCCTCAATTTTCT---CGCCTT-AC-------C-CCCTTCGTATAGT-CC-CCAATTA-TGGTGCTCCATGTAGC-GTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACT-ATATATCTA-TTAG-CCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTTGCAACA-CTATACA-AAAAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACG-ATTGTGAAAGGAGGGAAAAAAA
gi|20 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacacAAAAATCGCTGTTGCAGGG--AATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAACGA-TACCGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-CG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGAaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|21 : AGGTATCGCTTATGCTCAAACCCAAGGTACATT-CGGG-AAAAGCCTATA---TTGAAC-GTACACTAGATTATCGAC-T-GTCTGTTATATTCAAAAATCTACACAGCGTATTTAGA-AGATCAAGCTTA
gi|22 : cgtattttgattgcAAAGCCATATTTC-TACAGAGAATATTTTTTC-----T----TCATCTCAC-CAATTGCTGATTTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTTGAGAGGT-TCGCTTATGCT
gi|23 : ATTAAATGACT----TGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT-----A----TGA-CTGAC-CAGTTGCTGATTTTTTCCCCAACAGGAAGTTTCT
gi|3 : AAAAAAATGTT-A-ATGGTCAATGC--AAAAAAC-ATAACATAA--TAA-T-----GCAA-TAACTGC-ATA-CTTATGTTGTTGG---AA-GTAGAGGGTGACTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTG-CCGGTAGACA-GACTTGCAGGTCATGC-C-G-CTGATTTG--GGTACTCC-AATC-GAGATGTGCTTCCG-CTGACCCCTCAG-TTACT---CGCCTT-AC-------C----TTCGT-T-GT-GC-CACATTAATGGTG---CA-GT-GCCG---TTTCCT--TCCGGCTC-CT-GGATATCTC-----GGTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA-T-A-A-A--TATTTAGCCCA-GAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTGG
gi|4 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaAGAAAAATGTT-A-GTGGCCAGT--C-AAAAA--CATTACCTAA--TAA-TGAGTTGCCA-TAACTGC-ATA-CTTATGTTGTTGG---AA-GTAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG--GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CCAATTA-TGGTG---CA-GT-GC-G---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATATAT-TA-TTAG-CCA-GAAATCGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTAT-AC-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGCAAGTCTGGC--TTTACGA---TTGAA--AGGGGAAAAAAAgt
gi|5 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCTTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--ACCT--C--AAA-----C--C--ACG-A-AG---TAAAACAG-------ACA-CT--AC-TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCAC-AAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGG--------aaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|5 : gTGG-ANACTGACGCAGGTAT---TCAC-AAACC--------------TA-AGTT--GACCCTTTTCATGGACCTTAGTTGGG-AT-TGTATGGC---CTGTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA----CGTGA-TCTA-TCGGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGTGTA--T-----CCGAAAACA--TGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-A-AATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTTTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|6 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCCTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--AC----CTCAAACCTCTA--ACCACGAA--G---TAAAACAG-------ACA-CTAC---TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCACCAAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGGACCTTAGTTGGA-AT-TGTATGGC---C-GTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA---GGTG-A-TCTA-TCCGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGGGTA--C-----CCGAAAACA--TGCATAG-AAT-GTATTCTAACAAGATG-CTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATA-TAT-A-AATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATAT-AAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTT-CTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTt
gi|7 : gGCTG--GAGGGAATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATAC-ACACAACCAAATTTATCT----ATG-ACTTCA-A-AGA-TAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGC------ACATCTACAC-TAGAT-ATGATAT------------ACTATGCCAAACTCCCGCATGTAT---ACA----------T-T-----TCATGCATTT--GAAGGTTTTGATTG---------GTA-AT-GTTATGGCAAGC-GTTACATAGGCCTA-TT-----TTTTG-------------TGC------------C--A--AAT-AAAAATTTACTTAAGAGCTT-A-TCTA-TCGAGATAGAAAGTT-AAT-AT-----AAGGTTTGTTGC-CAA---ATTAA-CGTGTA--CATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTG-CCGATTCCAACGGA-GCA----AACAGAACATGCA-CAATCGAATGGATATCAGTACGATTTCTT-GCCATCGACAGTTAAAATAATAT-A-T-TCTTGCTACAAT-ATCCTAAAATAt
gi|8 : ttCAG-TTACT---CGCCTT-AC-------C-CTCTTCGT-T-GT-CC-CCAATTA-TGGTT---CA-GT-GC-A---GTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATT-A--TA-TTAG-CCA-GAAAACGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTAT-AC-AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTATGGC--TTTACGA---TTGAA--AGGGG---AAGATTACTGCTGTA--GGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATCGA-TACCGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------TCTATGC-AAACTCCGGCATGTAT---ACAC-AAACC--AT-T-----TCGTGCATTT--GACGGTTTTCAT
gi|9 : TTTTTTGTTTA--ATTGGTAACAT-ACTTA---GCTG-A-TTTA-TGAGGGTACCAAGTT-AACCCT-----ACTGCT-ATTCC-TAAGTAACTAA----GTAATCATGTACCCGACA-A--CCTATGA---------------AAAATGGCCAATCATG-C---------CGTACTCGTCAGAAC------TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAA--ATTTAAGATAATTCAAAGT-TTTTAC-TTAAAGGACT----TGATAAACCCATATGTA-TACGGAT-ACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGATATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTCGAGA--------------------------CACATTCCGGG-AAAAAC--ATAACCATGAACAGTA-------------ACGG-GTTTGCAGTGTT---AAATCTACtgggta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 1 11 3333333 11 111 22 11111 11 22 1111 222222222 11 11111 1111 1111111111 222222 1 11111 1111 11111111 111111 111 222 1111 1 111 111 111 2222 1 2222 11111111111 111 2222222 33333333333333 1111 33333333333333333 777777777 22 0000000000000000000000000000000000000000000000000000000000000 333 1 11111 2222 2 1 55555555555555555555 11111 2222 333333333333 11 11 1 2222222222222 111 11111 2222
lowQualScore : 111 6 0 9999 3 5 1 1 33 8888888 6 44 6 99 111 77 99 44 66666 6 6 6 3 6 99 66 6 6 44 7 6 888 4444 6 5 0 4 777 4 999999999 555 8 4 4 0 11 888 5 5 5 888 66 5 5 2 22222 5 5 0000 88 5 5555555555 5 5 5 3 3 888888 66 1 33333 5 0 5 3 3 88 9999 6 33333333 999999 7 0 555 111 99 8888 3 555 6 111 0 6 1 444 8888 4 11 1 6 5 5 77 0000 77 88888888888 77 000 3333333 5 5 5 4 88888888888888 5 11 1 1111 77 33333333333333333 0 77 33 0 111111111 8 999 66 8 1 6666666666666666666666666666666666666666666666666666666666666 111 6 6 6 5 1 66666 6 2 3 7 4444 0 0 99 7 1 1 99 1 1 6 3 2 44444444444444444444 55555 7 5 5 5 0 5 3 1 1 5 5 1111 3 44 0 0 4 555555555555 5 1 4 1 55 1 3 4 22 66 44 66 999999 5 7777777777777 111 1 888 44444 0000 5
lowQualScore : ... . . .... . . . . .. ....... . .. . .. ... .. .. .. ..... . . . . . .. .. . . .. . . ... .... . . . . ... . ......... ... . . . . .. ... . . . ... .. . . . ..... . . .... .. . .......... . . . . . ...... .. . ..... . . . . . .. .... . ........ ...... . . ... ... .. .... . ... . ... . . . ... .... . .. . . . . .. .... .. ........... .. ... ....... . . . . .............. . .. . .... .. ................. . .. .. . ......... . ... .. . . ............................................................. ... . . . . . ..... . . . . .... . . .. . . . .. . . . . . .................... ..... . . . . . . . . . . . .... . .. . . . ............ . . . . .. . . . .. .. .. .. ...... . ............. ... . ... ..... .... .
lowQualScore : 000 5 8 5555 2 0 0 0 88 6666666 7 00 7 22 777 77 22 77 77777 7 7 7 5 7 22 00 7 7 77 3 7 333 2222 7 7 2 4 888 4 777777777 333 9 4 4 8 55 888 0 0 0 888 99 0 0 5 55555 0 0 6666 22 0 6666666666 0 0 0 2 6 888888 99 4 66666 7 7 7 2 3 33 0000 7 33333333 222222 3 7 888 555 22 1111 2 333 7 777 7 7 0 333 3333 0 44 4 3 7 7 99 0000 99 99999999999 11 000 4444444 0 7 7 3 77777777777777 7 77 3 0000 11 33333333333333333 7 99 77 7 444444444 0 222 66 0 4 8888888888888888888888888888888888888888888888888888888888888 888 7 7 7 5 0 77777 7 5 2 3 6666 4 6 22 3 0 0 22 0 3 7 2 5 77777777777777777777 88888 3 0 7 7 7 7 0 0 3 7 0 2222 2 66 7 1 6 333333333333 3 0 4 9 00 1 4 4 44 99 44 99 222222 0 5555555555555 111 0 888 33333 3333 7
consensus : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACAAA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTG-CGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
Reference ( family-2950 ) : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTATAACTATANAAA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTG-CGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
gi|1 : AGAAAATAATGTT-ATGTGGCCAATTCCCAAAAAACCATAACATAA--TAA-TTAGTTGCCA-TAACTGA-ATA-CTTAT--TGTTGGGAATG---TAGAGGGTA-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTC--GTAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG---GTACTCCCAATTAT-GAT----TTCCGTCTG-CCCCTCAG-TTACT---CGCCTT-AC-------CTCCCTTCGT-T-GT-TC-CAACTT-ATGGTG---CA-GT-G-CG---TTTCCT--TCTGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-T-AG-CCA-GAAAACGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTAT---TTTAAAAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAAGTAAGTATGGC--TTTACGA---TTGAA--AGAGGAAAAAAATTGCTGCTG-CGGGT-AATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAACAA-TACCGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-TAA---C----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCTCGCATGTAT---ACAC-AAACC--AT-T-----TCATGCATTT--GACGGTTTTCATGG---------GGA-AT-GTTATGGCA-GC-GTTACATATACCTATTTTTATTCTTTTTTATTTATTTATTTATA-TTTTTTTTTGCAAA--AATGAAAAAATTACTTAATAGCTT-A-TCTA-TCGAGATAGAAAG-TTAATCAT-----A-G---------ATAA---ATTAA-CGTGTA--CATGTGCCGCACACA--TGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-----CCC-AA---------CAGAA-----CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-A-TATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT-----A----TGAACTGAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATACTC-GACCC--GGCAAATTCCGGG--AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATA
gi|10 : TA--CATGTGTCGCACACA--TGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG-C-----------------CCAGCAGAA--CATGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-A-TATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT-----A----TAAACTGGC-CAATTGCTGATTTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-GACTC--AGCAAATTCCGGGAAAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCT
gi|11 : -GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGGG-CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-CAACTG-C--TTAGAGAAGACTTGCATGTCATGT--TG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTTCTT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA-TAATT-G--TA-TTAG-CCA-GAAATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|12 : a-GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGG--CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-C--TTAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTT-TT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAATAA----ATA-A--TG-TTAG-CCA-G-AATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|13 : aTAGATTCCA-ATGGACAAATATAAGAACTATGC--AAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTC-ACACACAGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC--AACC--ATATATAAATTATG-AGCTTAGATAGTTTT-ATGGT-------CGCACATGTTTATGGCACGC-GTTA-ATATACCTA-TT----------------ATTTATTTATATTTTTTTTTTGCT-AATAATGAAGAAATTACTTAA-AGCTT-ACTCTATTCGAGATAGAAAGTT--ATCATAGATAAAGTTTTGTTGCA
gi|14 : gTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTT------A----TGAACTAAC-CAATTGCTGAGGTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATacatagcgtttgtatatg
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTC------A----TGATCTCACACAATTGCTGATTTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATGCTC--ACCC--GGTAAATTCCGGG-AAAAGC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCTGTGTT---AAATATACA-----TATTTA-A-AGA-CAAGCTTCAATA
gi|17 : G-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-GC-CAAtgtg
gi|18 : -CTCCT-AG-TTGCTTTTCGCTTTTGC-------C-CCCTT-GT---GC-CCTC---TT-TGGGTG---CC-GG-T-CG---CTCCCT--ACAAACTC--T-GGCTTTC-C-----GGCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAA---ACT-A--TA-TTAG-TAA-G-AATCAAATAAC------ATTACGTAATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|2 : gcgagcagctctggcctggcctctgttgtcgcatcaAGTAAAAATTGTTTA-GTGG-----ACC-ATAACAC-ATTACCTAAATTAAAT-GAT-GCCAATAACTGC-ATAACTTATGTTGTTGGAA--GAATCAGAGGGTAACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-C--GTAGACA-GACTGCCAGGTCATGCTCTGACTG-TTTGGCGATACTCC-AATC-T-GAT----TTCCG-TTG--CCCTCAATTTTCT---CGCCTT-AC-------C-CCCTTCGTATAGT-CC-CCAATT-ATGGTGCTCCATGTAG-CGTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACT-ATATATCTA-TTAG-CCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTT-GCAACACTATACAAA---AAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACG-ATTGTGAAAGGAGGGAAAAAAA
gi|20 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacacAAAAATCGCTGTTG-CAGGG-AATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAACGA-TACCGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-CG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGAaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|21 : AGGTATCGCTTATGCTCAAACCCAAGGTACATT-CGGG-AAAAGCCTATA---TTGAAC-GTACACTAGATTATCGAC-T-GTCTGTTATATTCAAAAATCTACACAGCGTATTTAGA-AGATCAAGCTTA
gi|22 : cgtattttgattgcAAAGCCATATTTC-TACAGAGAATATTTTTTC-----T----TCATCTCAC-CAATTGCTGATTTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTTGAGAGGT-TCGCTTATGCT
gi|23 : ATTAAATGACT----TGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT-----A----TGA-CTGAC-CAGTTGCTGATTTTTTCCCCAACAGGAAGTTTCT
gi|3 : AAAAAAATGTT-A-ATGGTCAATGC--AAAAAAC-ATAACATAA--TAA-T-----GCAA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTGACTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTG-CCGGTAGAC-AGACTTGCAGGTCATGC-C-G-CTGATTTG--GGTACTCC-AATC-GAGATGTGCTTCCG-CTGACCCCTCAG-TTACT---CGCCTT-A-----------CCTTCGT-T-GT-GC-CACATTAATGGTG---CA-GT-GCCG---TTTCCT--TCCGGCTC-CT-GGATATCTC-----GGTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA-T-A-A-A--TATTTAGCCCA-GAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTGG
gi|4 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaAGAAAAATGTT-A-GTGGCCAGT--C-AAAAA--CATTACCTAA--TAA-TGAGTTGCCA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG--GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CCAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATATAT-TA-TTAG-CCA-GAAATCGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC-AA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGCAAGTCTGGC--TTTACGA---TTGAA--AGGGGAAAAAAAgt
gi|5 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCTTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--ACCT--C--AAA-----C--C--ACG-A-AG---TAAAACAG-------ACA-CT--AC-TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCAC-AAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGG--------aaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|5 : gTGG-ANACTGACGCAGGTAT---TCAC-AAACC--------------TA-AGTT--GACCCTTTTCATGGACCTTAGTTGGG-AT-TGTATGGC---CTGTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA----CGTGA-TCTA-TCGGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGTGTA--T-----CCGAAAACA--TGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-A-AATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTTTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|6 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCCTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--AC----CTCAAACCTCTA--ACCACGAA--G---TAAAACAG-------ACA-CTAC---TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCACCAAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGGACCTTAGTTGGA-AT-TGTATGGC---C-GTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA---GGTG-A-TCTA-TCCGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGGGTA--C-----CCGAAAACA--TGCATAG-AAT-GTATTCTAACAAGATG-CTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATA-TAT-A-AATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATAT-AAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTT-CTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTt
gi|7 : gGCTG--GAGGGAATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATAC-ACACAACCAAATTTATCT----ATG-ACTTCA-A-AGA-TAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGC------ACATCTACAC-TAGAT-ATGATAT------------ACTATGCCAAACTCCCGCATGTAT---ACA----------T-T-----TCATGCATTT--GAAGGTTTTGATTG---------GTA-AT-GTTATGGCAAGC-GTTACATAGGCCTA-TT-----TTTTG-------------TGC------------C--A--AAT-AAAAATTTACTTAAGAGCTT-A-TCTA-TCGAGATAGAAAGTT-AAT-AT-----AAGGTTTGTTGC-CAA---ATTAA-CGTGTA--CATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTG-CCGATTCCAACGGA-GCA----AACAGAACATGCA-CAATCGAATGGATATCAGTACGATTTCTT-GCCATCGACAGTTAAAATAATAT-A-T-TCTTGCTACAAT-ATCCTAAAATAt
gi|8 : ttCAG-TTACT---CGCCTT-AC-------C-CTCTTCGT-T-GT-CC-CCAATT-ATGGTT---CA-GT-G-CA---GTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATT-A--TA-TTAG-CCA-GAAAACGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC-AA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTATGGC--TTTACGA---TTGAA--AGGGG---AAGATTACTGCTG-T-AGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATCGA-TACCGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------TCTATGC-AAACTCCGGCATGTAT---ACAC-AAACC--AT-T-----TCGTGCATTT--GACGGTTTTCAT
gi|9 : TTTTTTGTTTA--ATTGGTAACAT-ACTTA---GCTG-A-TTTA-TGAGGGTACCAAGTT-AACCCT-----ACTGCT-ATTCC-TAAGTAACTAA----GTAATCATGTACCCGACA-A--CCTATGA---------------AAAATGGCCAATCATG-C---------CGTACTCGTCAGAAC------TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAA--ATTTAAGATAATTCAAAGT-TTTTAC-TTAAAGGACT----TGATAAACCCATATGTA-TACGGAT-ACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGATATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTCGAGA--------------------------CACATTCCGGG-AAAAAC--ATAACCATGAACAGTA-------------ACGG-GTTTGCAGTGTT---AAATCTACtgggta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 1 11 3333333 11 111 22 11111 11 22 1111 222222222 11 11111 1111 1111111111 222222 1 11111 1111 11111111 111111 111 222 1111 1 111 111 111 2222 1 2222 11111111111 111 2222222 33333333333333 1111 33333333333333333 777777777 22 0000000000000000000000000000000000000000000000000000000000000 333 1 11111 2222 2 1 55555555555555555555 11111 2222 333333333333 11 11 1 2222222222222 111 11111 2222
lowQualScore : 111 6 0 9999 3 5 1 1 33 8888888 6 44 6 99 111 77 99 44 66666 6 6 6 3 6 99 66 6 6 44 7 6 888 4444 6 5 0 4 777 4 999999999 555 8 4 4 0 11 888 5 5 5 888 66 5 5 2 22222 5 5 0000 88 5 5555555555 5 5 5 3 3 888888 66 1 33333 5 0 5 3 1 7 9999 6 33333333 999999 7 0 555 111 99 8888 3 555 6 111 0 6 1 444 8888 4 11 1 6 5 5 77 0000 77 88888888888 77 000 3333333 5 5 5 4 88888888888888 5 11 1 1111 77 33333333333333333 0 77 33 0 111111111 8 999 66 8 1 6666666666666666666666666666666666666666666666666666666666666 111 6 6 6 5 1 66666 6 2 3 7 4444 0 0 99 7 1 1 99 1 1 6 3 2 44444444444444444444 55555 7 5 5 5 0 5 3 1 1 5 5 1111 3 44 0 0 4 555555555555 5 1 4 1 55 1 3 4 22 66 44 66 999999 5 7777777777777 111 1 888 44444 0000 5
lowQualScore : ... . . .... . . . . .. ....... . .. . .. ... .. .. .. ..... . . . . . .. .. . . .. . . ... .... . . . . ... . ......... ... . . . . .. ... . . . ... .. . . . ..... . . .... .. . .......... . . . . . ...... .. . ..... . . . . . . .... . ........ ...... . . ... ... .. .... . ... . ... . . . ... .... . .. . . . . .. .... .. ........... .. ... ....... . . . . .............. . .. . .... .. ................. . .. .. . ......... . ... .. . . ............................................................. ... . . . . . ..... . . . . .... . . .. . . . .. . . . . . .................... ..... . . . . . . . . . . . .... . .. . . . ............ . . . . .. . . . .. .. .. .. ...... . ............. ... . ... ..... .... .
lowQualScore : 000 5 8 5555 2 0 0 0 88 6666666 7 00 7 22 777 77 22 77 77777 7 7 7 5 7 22 00 7 7 77 3 7 333 2222 7 7 2 4 888 4 777777777 333 9 4 4 8 55 888 0 0 0 888 99 0 0 5 55555 0 0 6666 22 0 6666666666 0 0 0 2 6 888888 99 4 66666 7 7 7 2 0 3 0000 7 33333333 222222 3 7 888 555 22 1111 2 333 7 777 7 7 0 333 3333 0 44 4 3 7 7 99 0000 99 99999999999 11 000 4444444 0 7 7 3 77777777777777 7 77 3 0000 11 33333333333333333 7 99 77 7 444444444 0 222 66 0 4 8888888888888888888888888888888888888888888888888888888888888 888 7 7 7 5 0 77777 7 5 2 3 6666 4 6 22 3 0 0 22 0 3 7 2 5 77777777777777777777 88888 3 0 7 7 7 7 0 0 3 7 0 2222 2 66 7 1 6 333333333333 3 0 4 9 00 1 4 4 44 99 44 99 222222 0 5555555555555 111 0 888 33333 3333 7
consensus : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACAAA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTG-CGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
Reference ( family-2950 ) : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACAAA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTG-CGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
gi|1 : AGAAAATAATGTT-ATGTGGCCAATTCCCAAAAAACCATAACATAA--TAA-TTAGTTGCCA-TAACTGA-ATA-CTTAT--TGTTGGGAATG---TAGAGGGTA-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTC--GTAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG---GTACTCCCAATTAT-GAT----TTCCGTCTG-CCCCTCAG-TTACT---CGCCTT-AC-------CTCCCTTCGT-T-GT-TC-CAACTT-ATGGTG---CA-GT-G-CG---TTTCCT--TCTGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-T-AG-CCA-GAAAACGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTAT---TTTAAAAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAAGTAAGTATGGC--TTTACGA---TTGAA--AGAGGAAAAAAATTGCTGCTG-CGGGT-AATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAACAA-TACCGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-TAA---C----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCTCGCATGTAT---ACAC-AAACC--AT-T-----TCATGCATTT--GACGGTTTTCATGG---------GGA-AT-GTTATGGCA-GC-GTTACATATACCTATTTTTATTCTTTTTTATTTATTTATTTATA-TTTTTTTTTGCAAA--AATGAAAAAATTACTTAATAGCTT-A-TCTA-TCGAGATAGAAAG-TTAATCAT-----A-G---------ATAA---ATTAA-CGTGTA--CATGTGCCGCACACA--TGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-----CCC-AA---------CAGAA-----CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-A-TATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT-----A----TGAACTGAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATACTC-GACCC--GGCAAATTCCGGG--AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATA
gi|10 : TA--CATGTGTCGCACACA--TGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG-C-----------------CCAGCAGAA--CATGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-A-TATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT-----A----TAAACTGGC-CAATTGCTGATTTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-GACTC--AGCAAATTCCGGGAAAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCT
gi|11 : -GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGGG-CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-CAACTG-C--TTAGAGAAGACTTGCATGTCATGT--TG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTTCTT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA-TAATT-G--TA-TTAG-CCA-GAAATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|12 : a-GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGG--CAT--CCTTCAGGA-TAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-C--TTAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTT-TT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAATAA----ATA-A--TG-TTAG-CCA-G-AATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTGGTATAACTCTATAAA------ATG-CGAGGAAATATT---AG---GCATTGT
gi|13 : aTAGATTCCA-ATGGACAAATATAAGAACTATGC--AAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTC-ACACACAGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC--AACC--ATATATAAATTATG-AGCTTAGATAGTTTT-ATGGT-------CGCACATGTTTATGGCACGC-GTTA-ATATACCTA-TT----------------ATTTATTTATATTTTTTTTTTGCT-AATAATGAAGAAATTACTTAA-AGCTT-ACTCTATTCGAGATAGAAAGTT--ATCATAGATAAAGTTTTGTTGCA
gi|14 : gTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTT------A----TGAACTAAC-CAATTGCTGAGGTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTCAAATacatagcgtttgtatatg
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGACT----TGATAAAGCCATATTTC-TACAGAGAACATTTTTC------A----TGATCTCACACAATTGCTGATTTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATGCTC--ACCC--GGTAAATTCCGGG-AAAAGC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCTGTGTT---AAATATACA-----TATTTA-A-AGA-CAAGCTTCAATA
gi|17 : G-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-GC-CAAtgtg
gi|18 : -CTCCT-AG-TTGCTTTTCGCTTTTGC-------C-CCCTT-GT---GC-CCTC---TT-TGGGTG---CC-GG-T-CG---CTCCCT--ACAAACTC--T-GGCTTTC-C-----GGCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAA---ACT-A--TA-TTAG-TAA-G-AATCAAATAAC------ATTACGTAATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|2 : gcgagcagctctggcctggcctctgttgtcgcatcaAGTAAAAATTGTTTA-GTGG-----ACC-ATAACAC-ATTACCTAAATTAAAT-GAT-GCCAATAACTGC-ATAACTTATGTTGTTGGAA--GAATCAGAGGGTAACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-C--GTAGACA-GACTGCCAGGTCATGCTCTGACTG-TTTGGCGATACTCC-AATC-T-GAT----TTCCG-TTG--CCCTCAATTTTCT---CGCCTT-AC-------C-CCCTTCGTATAGT-CC-CCAATT-ATGGTGCTCCATGTAG-CGTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACT-ATATATCTA-TTAG-CCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTT-GCAACACTATACAAA---AAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACG-ATTGTGAAAGGAGGGAAAAAAA
gi|20 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacacAAAAATCGCTGTTG-CAGGG-AATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAACGA-TACCGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-CG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGAaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|21 : AGGTATCGCTTATGCTCAAACCCAAGGTACATT-CGGG-AAAAGCCTATA---TTGAAC-GTACACTAGATTATCGAC-T-GTCTGTTATATTCAAAAATCTACACAGCGTATTTAGA-AGATCAAGCTTA
gi|22 : cgtattttgattgcAAAGCCATATTTC-TACAGAGAATATTTTTTC-----T----TCATCTCAC-CAATTGCTGATTTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTTGAGAGGT-TCGCTTATGCT
gi|23 : ATTAAATGACT----TGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT-----A----TGA-CTGAC-CAGTTGCTGATTTTTTCCCCAACAGGAAGTTTCT
gi|3 : AAAAAAATGTT-A-ATGGTCAATGC--AAAAAAC-ATAACATAA--TAA-T-----GCAA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTGACTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTG-CCGGTAGAC-AGACTTGCAGGTCATGC-C-G-CTGATTTG--GGTACTCC-AATC-GAGATGTGCTTCCG-CTGACCCCTCAG-TTACT---CGCCTT-A-----------CCTTCGT-T-GT-GC-CACATTAATGGTG---CA-GT-GCCG---TTTCCT--TCCGGCTC-CT-GGATATCTC-----GGTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA-T-A-A-A--TATTTAGCCCA-GAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTGG
gi|4 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaAGAAAAATGTT-A-GTGGCCAGT--C-AAAAA--CATTACCTAA--TAA-TGAGTTGCCA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG--GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CCAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATATAT-TA-TTAG-CCA-GAAATCGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC-AA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGCAAGTCTGGC--TTTACGA---TTGAA--AGGGGAAAAAAAgt
gi|5 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCTTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--ACCT--C--AAA-----C--C--ACG-A-AG---TAAAACAG-------ACA-CT--AC-TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCAC-AAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGG--------aaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|5 : gTGG-ANACTGACGCAGGTAT---TCAC-AAACC--------------TA-AGTT--GACCCTTTTCATGGACCTTAGTTGGG-AT-TGTATGGC---CTGTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA----CGTGA-TCTA-TCGGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGTGTA--T-----CCGAAAACA--TGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-A-AATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTTTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|6 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCCTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--AC----CTCAAACCTCTA--ACCACGAA--G---TAAAACAG-------ACA-CTAC---TAGAT-AT-ATGT------------A-TATGC-AAACTGACGCAGGTAT---TCACCAAACCTAAG-T-----TGATA-AGTT--GACCCTTTTCATGGACCTTAGTTGGA-AT-TGTATGGC---C-GTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACA-T--------GC--A-------------TACTTA---GGTG-A-TCTA-TCCGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA----CTAATCGGGTA--C-----CCGAAAACA--TGCATAG-AAT-GTATTCTAACAAGATG-CTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATA-TAT-A-AATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATAT-AAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACAT-----------AAGCGTGATATTAC-CAATTGCTGATGTTTTTC---------AGTT-CTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT--GCAGA-CAATCTTt
gi|7 : gGCTG--GAGGGAATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATAC-ACACAACCAAATTTATCT----ATG-ACTTCA-A-AGA-TAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGC------ACATCTACAC-TAGAT-ATGATAT------------ACTATGCCAAACTCCCGCATGTAT---ACA----------T-T-----TCATGCATTT--GAAGGTTTTGATTG---------GTA-AT-GTTATGGCAAGC-GTTACATAGGCCTA-TT-----TTTTG-------------TGC------------C--A--AAT-AAAAATTTACTTAAGAGCTT-A-TCTA-TCGAGATAGAAAGTT-AAT-AT-----AAGGTTTGTTGC-CAA---ATTAA-CGTGTA--CATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTG-CCGATTCCAACGGA-GCA----AACAGAACATGCA-CAATCGAATGGATATCAGTACGATTTCTT-GCCATCGACAGTTAAAATAATAT-A-T-TCTTGCTACAAT-ATCCTAAAATAt
gi|8 : ttCAG-TTACT---CGCCTT-AC-------C-CTCTTCGT-T-GT-CC-CCAATT-ATGGTT---CA-GT-G-CA---GTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATT-A--TA-TTAG-CCA-GAAAACGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC-AA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTATGGC--TTTACGA---TTGAA--AGGGG---AAGATTACTGCTG-T-AGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATCGA-TACCGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------TCTATGC-AAACTCCGGCATGTAT---ACAC-AAACC--AT-T-----TCGTGCATTT--GACGGTTTTCAT
gi|9 : TTTTTTGTTTA--ATTGGTAACAT-ACTTA---GCTG-A-TTTA-TGAGGGTACCAAGTT-AACCCT-----ACTGCT-ATTCC-TAAGTAACTAA----GTAATCATGTACCCGACA-A--CCTATGA---------------AAAATGGCCAATCATG-C---------CGTACTCGTCAGAAC------TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAA--ATTTAAGATAATTCAAAGT-TTTTAC-TTAAAGGACT----TGATAAACCCATATGTA-TACGGAT-ACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGATATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTCGAGA--------------------------CACATTCCGGG-AAAAAC--ATAACCATGAACAGTA-------------ACGG-GTTTGCAGTGTT---AAATCTACtgggta
blockSeqs : TA T ACC A C T C AT TGAGTT A TG A . AAT GA GC A AACCC G T T A . CG TC A A GC T . GA GTGC . A T TTT T AGTTTTGT ATA A T A AA CTC T A C TTT AC A C C GCCAA T T AATA TA A CTATATATC T C G A T CATCTA AC C ACAA C A A C A A A CAAATGGG TTTAAA A CTT ATT AG GAAA G TCG G ATC A T AAC GAAC G TT C T C A GA TATG TC CCTCTAACC CA GAT CTAACAG T A A G CGAGTAATGGAGGC C CT T AGGG CA ATATATAAATTATG TA AG ACCTTAGTT C GTT AC T T CCTATTATTTATTTATATTTTTTTTTTGCTAATAATGAAGAAA AGA G C T T A AGATA A T T A GTAA T AT A G C CA A T A A G GCGACTCAACGTACGCAC CAGAA A A C T G C A C G A ACTT A TA T TTTTTGCG A G A T CC C G A AA AA AA CT TAACCA T CACTAGATTATCG AT A CAA CAGCG AGA T
blockSeqs : A C GC A . A A . ATGAT . TG . . . G . A . . . . T . . T . . A T . T . . . . . . AGTTTTGT T A . A T . . . . . . . . C . . . . T . TATATAT . . . A T CATCTA . C AG . . A C A A . AG . A C ATT . GAAA A TCG G . . G AAT GAAC G AA C T . . . CT . AGAA C . CT T . . G AC . GA G T A TAAGTTGATA . CC ACCTTAGTT . TG AA . A GGTCTATTTTTTGGTAATAATTACATGCA AA . . . T C . C G T A A T . A G A . C G . A C GCGACTCAACGTACGCAC GAA A A . . . C A C . A ACTT A C T AAGCG A A . G CC G G . G . A . TAT T . AT A . . AA .
blockSeqs : A . C . . T C . T . A . . . A . C . . . . T . . C . . A T . T . . . . . . C T . . A A . . . . . . . . C . . . . T . TAATTG . . . A T . . . C . . C A A A . AG . A C ATT . G . CA G . . G ATT . A CA . C . . . . . AA A . CT T . . G TC . GA G T A TAAGTTGATA . CC TC . TG . . A GGTCTATTTTTTGGTAATAATTACATGCA . . . . . C . C G T A . . . A A A . C T . A C CCGATTCCAACGGAGCA CAG A A . . . G T C . A . A C T AAGCG T C . T CC G G . A . A . TAT A . GG A . . GC .
blockSeqs : . A . . . G . C . . . . T . . . . . . . . T . . . . . . C T . . C A . . . . . . . . C . . . . T . TATTA . . . A T . . . C . . A A . . . AT . . . . . . . G G . . C . . A CA . C . . . . . CC A . C T . . G A . GA G T A ATTTCGTGC . CC . . GT . . T CCTATTTTTTGTGCCAAATAAAAAT . . . . . A . A G T . . . . . . C . A . . . G CCGTACTCGT CAG . A . . . G T A . A . A C T ATA T C . T CC G A . A . A . TAT . . A T . . GC .
blockSeqs : . A . . . . . C . . . . . . . . . . . . . T . . . . . . C T . . A A . . . . . . . . C . . . . T . ATAA . . . A T . . . A . . A A . . . AT . . . . . . T . . . C . . A CT . T . . . . . AA A . . . . . . A . CC T A . TTTCATGC . GG . . . . . C . C G . . . . . G . T . . . . CC C . . . . . T T A . . . A C T TCT T G . T CA C A . A . A . TAT . . A T . . A .
blockSeqs : . . . . C T . . C . . . . . . . . . . . . . . . . ACTA . . . . A . . . A . . . TT . . . . . . . AA . . . . . . . . CC T A . TA . GG . . . . . A . . . . G . TTA T T . G C G T . . . . . . . . A T . . A .
blockSeqs : . . . C T . . C . . . . . . . . . . . . . . . . TAAA . . . . . . . . . A . TA C T . G . . . . . . . . . . . T T .
blockSeqs : . . . . . . . . A . CA . T . A . . .
blockSeqCons : ** C* T** C******** TATTA***** A*** ATT G*** TCG CT***** TAATTCATGC******* TC******* A* *** G*** CGACTCAACGTACGCGC*** CAG** A* GA**
originalCons : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGACTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATA-A--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACAAA---AATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGGAAAAAAATCGCCGCTG-CGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACC--AT-T-----TCATGCAGTT--GACGGTTTTCATGG--------CGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTAA-AGCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAA---ACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCACCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT--A-AGA-CAAGCTTAAATA
finalCons : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGGC-TCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATCT--GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-ACC--------CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAATATTA-----TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACAAAA---ATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGG---AAAATCGCCGCTGTCGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCT-----ACATCTACAC-TAGAT-ATGATAT------------ACTATGC-AAACTCNCGCATGTAT---NCAC-AAACCTAATTCATGC-------AGTT--GACGGTTTTCATGGTC-------GGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACA-TTTTTTTTTGC--A--AATGAAAAAATTACTTA---GCTT-A-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAAG---CTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTGCGACTCAACGTACGCGC---CAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGACT----TGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGATTTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGGA-AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTTGA--AGA-CAAGCTTAAATA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111
lowQualScore : 111 1111 1 11 3333333 11 111 11111 111 22 1111 222222222 11 11111 1111 222222 222222 1 11111 1111 11111111 111111 111 222 1111 1 222 111 111 2222 1 2222 11111111111 111 11111111 33333333333333 1111 3333333333333333 555555555 22 000000000000000000000000000000000000000000000000000000000000 1111111111 1 11111 22 1 1 5555555555555555555 11111 2222 33333333333333333 11 11 1 2222222222222 111 11111 11
lowQualScore : 111 6 0 9999 3 5 1 1 33 8888888 6 44 6 99 111 77 99 6 66666 6 6 6 3 6 99 222 6 6 44 7 6 888 4444 6 5 0 4 777 4 999999999 555 8 4 4 0 11 888 5 5 5 888 66 5 5 2 22222 5 5 0000 88 5 777 000000 5 5 5 3 3 888888 66 1 33333 5 0 5 3 1 9999 7 6 33333333 999999 7 0 555 111 99 6666 3 555 111 0 6 1 444 8888 4 11 1 6 5 5 77 0000 77 88888888888 77 000 44444444 5 5 5 4 88888888888888 5 11 1 1111 5 1 3333333333333333 0 77 33 0 5 555555555 8 999 66 8 1 555555555555555555555555555555555555555555555555555555555555 4444444444 3 6 6 5 1 66666 6 2 3 7 22 3 1 99 7 1 1 99 1 1 6 3 2 9999999999999999999 55555 7 5 0 5 5 0 5 3 1 1 5 5 1111 3 44 0 0 11111111111111111 5 1 4 8 2 3 3 4 22 66 44 66 999999 5 7777777777777 111 1 888 44444 99 5
lowQualScore : ... . . .... . . . . .. ....... . .. . .. ... .. .. . ..... . . . . . .. ... . . .. . . ... .... . . . . ... . ......... ... . . . . .. ... . . . ... .. . . . ..... . . .... .. . ... ...... . . . . . ...... .. . ..... . . . . . .... . . ........ ...... . . ... ... .. .... . ... ... . . . ... .... . .. . . . . .. .... .. ........... .. ... ........ . . . . .............. . .. . .... . . ................ . .. .. . . ......... . ... .. . . ............................................................ .......... . . . . . ..... . . . . .. . . .. . . . .. . . . . . ................... ..... . . . . . . . . . . . . .... . .. . . ................. . . . . . . . . .. .. .. .. ...... . ............. ... . ... ..... .. .
lowQualScore : 000 5 8 5555 2 0 0 0 88 6666666 7 00 7 22 777 77 22 7 77777 7 7 7 5 7 22 888 7 7 77 3 7 333 2222 7 7 2 4 888 4 777777777 333 9 4 4 8 55 888 0 0 0 888 99 0 0 5 55555 0 0 6666 22 0 111 444444 0 0 0 2 6 888888 99 4 66666 7 7 7 2 0 0000 3 7 33333333 222222 3 7 888 555 22 7777 2 888 777 7 7 0 333 3333 0 44 4 3 7 7 99 0000 99 99999999999 11 000 44444444 0 7 7 3 77777777777777 7 77 3 0000 7 4 7777777777777777 7 99 77 7 7 555555555 0 222 66 0 4 555555555555555555555555555555555555555555555555555555555555 5555555555 0 7 7 5 0 77777 7 5 2 3 88 6 0 22 3 0 0 22 0 3 7 2 5 8888888888888888888 88888 3 0 1 7 7 7 7 0 0 3 7 0 2222 2 66 7 1 11111111111111111 3 0 4 9 9 9 4 4 44 99 44 99 222222 0 5555555555555 111 0 888 33333 44 7
consensus : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-AT-TA--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACA---AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGG---AAAATCGCCGCTGC-GGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCTA-----CATC-TACACTAGATA-TGATAT------------ACTATGC-AAACTCNCGCATGTATN---CAC-AAACC-----TAA-TTCATGCAGTT--GACGGTTTTCAT-GG-------TCGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACATTTTTTTTT-GC--A-AATGAAAAAATTACT---T--A---GCTNA-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAAACTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCGCCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGAT-TTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT-GAAGA-CAAGCTTAAATA
Reference ( family-2950 ) : AGAAAAAAATGTT-A-GTGGCCAATNCC-AAAAAACCATNACNTAA--TAA-T-AGT-GCCA-TAACTGC-GTA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC-CTG-CTG-TTTGA-GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CAAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-AT-TA--TA-TTAG-CCA-GAAATCGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTNTACA---AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTACGGC--TTTACGAATTTTGAA--GGGGG---AAAATCGCCGCTGTCGGGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCGGAACGA-TACCGCTCAACCAAACTTTCCT----ATGGACNCCA-ACGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCTA-----CATC-TACACTAGATA-TGATAT------------ACTATGC-AAACTCNCGCATGTATN---CAC-AAACC-----TAA-TTCATGCAGTT--GACGGTTTTCAT-GG-------TCGGA-AT-TTTATGGCA-GC-GTTACATATGCCTA-TTCTATTTTTTGGTA---ATTTANTTACATTTTTTTTT-GC--A-AATGAAAAAATTACT---T--A---GCTTA-TCTA-TCGGGATAGAAAGTTTAATCNT-----ACGGCTTGTTGCATAAGCTAATCGTGTA--CATGTGCCGNACACA--TGNATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-C-GACTC-AACGTACGCGCCAGAACAG--CATGCAACAATCGAATAGATATAAGTACGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACANTTGAAATAAGTGAAAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACGGAGAACATTTTTTT-----A----TGANCTNAC-CAATTGCTGAT-TTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-GACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTNGCAGTGTT---AAATCTACA-----TATTT-GAAGA-CAAGCTTAAATA
gi|1 : AGAAAATAATGTT-ATGTGGCCAATTCCCAAAAAACCATAACATAA--TAA-TTAGTTGCCA-TAACTGA-ATA-CTTAT--TGTTGGGAATG---TAGAGGGTA-CTGGG-CAT--CCAACAGGGCTCAA-----C-CCTGTTGCCAA-CCG-CTACTGTC--GTAGACAA-ACTTGCAGGTCATGC-CTG-CTG-TTTG---GTACTCCCAATTAT-GAT----TTCCGTCTG-CCCCTCAG-TTACT---CGCCTT-AC-------CTCCCTTCGT-T-GT-TC-CAACTT-ATGGTG---CA-GT-G-CG---TTTCCT--TCTGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-AT-AA--TA--TAG-CCA-GAAAACGGATTGC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGTAT---TTTAAAAACAAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAAGTAAGTATGGC--TTTACGA---TTGAA--AGAGGAAAAAAATTGCTGCTGC--GGGTAATCGAACCCCG---GCCGTCTAGTTGCTAATCCAGAACAA-TACCGTTCAACAAAACTTTCCT----ATAGATTCCA-ATGGA-AAAT-T-A--AC----C--AAA-----A--A--AGGAA-AG---TAAAACAGCTA-----CATC-TACACTAGATA-TGATAT------------ACTATGC-AAACTCTCGCATGTATA---CAC-AAACC------AT-TTCATGCATTT--GACGGTTTTCAT-GG---------GGA-AT-GTTATGGCA-GC-GTTACATATACCTATTTTTATTCTTTTTTATTTATTTATTTATATTTTTTTTT-GCAAA-AATGAAAAAATTACTTAAT--A---GCTTA-TCTA-TCGAGATAGAAAG-TTAATCAT-----A-G---------ATAAATTAA-CGTGTA--CATGTGCCGCACACA--TGAATAATAAT-GTATTGTAACAAGATGGCTAACCCTG-----CCC-AA---------CAGAA-----CATGCAAAAATCGAATAGATATAAGTACGAAATCTTTGCCATCGACAGTTAAAATAATAT-A-TATGTTGATACAAC-ATCCTAAAACAATTGAAATAAGTGAAAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAAAATTTTTTT-----A----TGAACTGAC-CAATTGCTGAT-TTTTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATACTC-GACCC--GGCAAATTCCGGG--AAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--AAGA-CAAGCTCAAATA
gi|10 : TA--CATGTGTCGCACACA--TGAATAATAAT-GAATTGTAACAAGACGGCTAACCCTG-C-----------------CCAGCAGAA--CATGCAACAATCGAATAGATATAAATACGATTTCTTTGCCATCGACCGTTAAAATAATAT-A-TATGTTGCTGCAAT-ATCCTAAAACAATTGAAATAAGTGACAAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAAAA--ATAAT-----A----TAAACTGGC-CAATTGCTGAT-TTTTTCCCCAACAGGAAGTTTCTCGCTAGTGGTATTTGAGAGGT-TCGCTTATGCTC-GACTC--AGCAAATTCCGGGAAAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--AAGA-CAAGCT
gi|11 : -GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGGG-CAT--CCTTCAGG-ATAAA-----C-CCTGTTGCCAC-CTG-CAACTG-C--TTAGAGAAGACTTGCATGTCATG--TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTTCTT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAAGAAA-TAAT-TG--TA-TTAG-CCA-GAAATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACT-GAAAG-GTTGGTATAACTCTATA---AA---ATG-CGAGGAAATATT---AG---GCATTGT
gi|12 : a-GCCA-GTACTGCTGTA-GTTGTGTAGTTCGAA--G---TAGAGGTTAACTGG--CAT--CCTTCAGG-ATAAA-----C-CCTGTTGCCAC-CTG-C-ACTG-C--TTAGAGAAGACTTGCATGTCATGG-TTG-CTG-TGTGA-GA-ACTCC-AATC-T-GGT----TTCTG-CTG-CAACTTCG-TTACT---CGCCTT-ACAGTTTTGT-CCCCTCGT-T-GTACC-CAAGTT--TGGTG---CA-CT-G-CG---TTTGCT--TCTGGCTC-CT-GGATTT-TT-----GGCATG-G-TTC----GG-----TGAAGCAG-AAATAAA-T-A---A--TG-TTAG-CCA-G-AATCCGATTGCCATCTAACT--GCAATACATTAC---C-TACATAACG-AA-AG-GTTGGTATAACTCTATA---AA---ATG-CGAGGAAATATT---AG---GCATTGT
gi|13 : aTAGATTCCA-ATGGACAAATATAAGAACTATGC--AAA-----AGAA--AGGAACAGGATTAAAACAGCTAACAGACGTCACACAC-AGATAATGATATCGAGTAATGGAGGCTATGC-AATC-CTCGCATGTATAGGGCAC-AA-CCATATATAA-ATTATG-AGCTTAGATAGTTTT-AT-GG-------TCGCACATGTTTATGGCACGC-GTTA-ATATACCTA-TT----------------ATTTATTTATATTTTTTTTTTGCTAATAATGAAGAAATTACT---TAAA---GCTTACTCTATTCGAGATAGAAAGTT--ATCATAGATAAAGTTTTGTTGCA
gi|14 : gTAAGCAAGATTTCTTTGCCATCGACAGTTAAAATAATAT-A-TATCTTGCTACAAT-ATCCTAAAACCATTGAAATAAGTGACGAT-TTTTATATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAACATTTTTT------A----TGAACTAAC-CAATTGCTGAG-GTGTTCCCCAAGAGGAAGTTTCTCGGTAGTGGTATTCGAGAGGT-TCGCTTATGCTC-AACCC--GGCAAATTCCGGG-AAAAAC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCAGTGTT---AAATCTACA-----TATTT--AAGA-CAAGCTCAAATacatagcgtttgtatatg
gi|16 : taggtccTTGAAATAAGTGACAAT-TTTT-TATTAAATGAC----TTGATAAAGCCATATTTC-TACAGAGAACATTTTTC------A----TGATCTCACACAATTGCTGAT-TTTTTCCC-AAGAGGAAGTTTCTCGGTAGTGGTATTTGAGAGGT-TCGCTTATGCTC--ACCC--GGTAAATTCCGGG-AAAAGC--ATA---TTGAAC-GTA-------------AC-A-GTTAGCTGTGTT---AAATATACA-----TATTT-AAAGA-CAAGCTTCAATA
gi|17 : G-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-GC-CAAtgtg
gi|18 : -CTCCT-AG-TTGCTTTTCGCTTTTGC-------C-CCCTT-GT---GC-CCTC---TT-TGGGTG---CC-GG-T-CG---CTCCCT--ACAAACTC--T-GGCTTTC-C-----GGCATG-G-TCCAATAGAT-CAGTGAAGCAG-AAAGAAA---AC-TA--TA-TTAG-TAA-G-AATCAAATAAC------ATTACGTAATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaacaaacaggttggtattttaaaaaaaaaa
gi|2 : gcgagcagctctggcctggcctctgttgtcgcatcaAGTAAAAATTGTTTA-GTGG-----ACC-ATAACAC-ATTACCTAAATTAAAT-GAT-GCCAATAACTGC-ATAACTTATGTTGTTGGAA--GAATCAGAGGGTAACTGGGACATGCCTTACAGG-CTCAAAACCCCGCCTGTTGCCACTCCGTCTACTG-C--GTAGACA-GACTGCCAGGTCATGCTCTGACTG-TTTGGCGATACTCC-AATC-T-GAT----TTCCG-TTG--CCCTCAATTTTCT---CGCCTT-AC-------C-CCCTTCGTATAGT-CC-CCAATT-ATGGTGCTCCATGTAG-CGTTTTTTCCTACTCCGGCTCACTCGGATTT-TCGCCAAGGTATG-G-TTC----GATAGAATGAAGCAG-AAGAAAACT-ATATATCTA-TTAG-CCAGGAAATCGGATTAC------ATT--TTAAGC-ACTGCACAA-CACATAACACAACAGAGTT-GCAACACTATACA---AAAAT-TGATCAAGAAAAGGTCAAATGGGGCATTGTGTTTAAATTTAGGCAAGTCTGGCTTTTTACG-ATTGTGAAAGGAGGG---AAAA
gi|20 : gtctagcttgtgctaggtgatttattaaggcccgattcccttgccaacattgaaatgaaattataccataagactttcagcaaagaggtttccaaactggataacttggatgcataaaagagaaatctaacaattatttaatggttgaaaacatacaaagatggatcaaaataaaaggcaactcttaaaattaatttgataagtattagaacttacattatgtttgttttgttaatatgtgttctttttgtttttggacgcaaataatttgttatgaaactctccccagtctactggtagtcaataacgcgtggtcttttcagggcgatatggggcttcgtttgttatagaacagccctagcttaaattattcaatcaccccagtctctagatgggcacaagcgcattttctttgtcgaaaatactctctcgtcatagggccacgaaagtgaccaaaccgacac---AAAATCGCTGTTGC--AGGGAATCGAACCTCG---GCCAACTTGTTGCTAATCCAGAACGA-TACCGTTTGACCAAACTTTCCT----ATAGCAACCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGGAA-CG---TAAAACAGCTA-----CATC-TACACTAGATA-TGAaaaaaaaaccaaaagtaaaaaaaatcccacaaaaaaccagagaaaaattaccccctcaagattgctgttatgtgaaacacgcaat
gi|21 : aAGGTATCGCTTATGCTCAAACCCAAGGTACATT-CGGG-AAAAGCCTATA---TTGAAC-GTACACTAGATTATCGAC-T-GTCTGTTATATTCAAAAATCTACACAGCGTATTTAGAAGATCAAGCTTA
gi|22 : cgtattttgattgcAAAGCCATATTTC-TACAGAGAATATTTTTTC-----T----TCATCTCAC-CAATTGCTGAT-TTTTACCCCAAGAGGAAGTTTCTC-GTAGTGGTATTTGAGAGGT-TCGCTTATGCT
gi|23 : ATTAAATGAC----TTGATAAAGCCATATTTG-TACAGAGAAAATTTTTTT-----A----TGA-CTGAC-CAGTTGCTGAT-TTTTTCCCCAACAGGAAGTTTCT
gi|3 : AAAAAAATGTT-A-ATGGTCAATGC--AAAAAAC-ATAACATAA--TAA-T-----GCAA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTGACTGGA-CAT--CCAACAGG-CTCAA-----C-CCTGTTGCCAC-TCG-CTACTG-CCGGTAGAC-AGACTTGCAGGTCATGC-C-G-CTGATTTG--GGTACTCC-AATC-GAGATGTGCTTCCG-CTGACCCCTCAG-TTACT---CGCCTT-A-----------CCTTCGT-T-GT-GC-CACATTAATGGTG---CA-GT-GCCG---TTTCCT--TCCGGCTC-CT-GGATATCTC-----GGTATGTGTTTC----GGT-GAATGAAGCAGAAAAGAAA-T-A--AA--TATTTAGCCCA-GAAA-CGGATTAC------ATT--GTAATA-ACTGC---AGCACATAACA-AACAG-GTTGG
gi|4 : gtctagcttgtatggcagtggattttattaaagtcgtccctcttttccccttgcacacattgagtgaggaataagcagcaatcattttatattgtatagattgatgatagacgggagggtgcggcaggcagaaattaattttatatagctggggtaagtaaaaacacaagatgggtaaatattaaaggcaatatttgatatgagtgttatggataagatattttatgtagatgggactaaaaaatcgctaccatgctgtcgtttcttgtgagagcagagcgcatatggaagcgcagcttttaaatttagcgcccgcgtccctaagaaataaaattgtggttaggctattccggcgctaagattgcttcggagaatatatctttaatagttgtattataagcagcactcgcataactatgtgtcggaatcaccccagtcctctagaaggtagcacaagtgtattttctttagtcgaattttcccgacataggccacgcaagtgacacaacccaccaAGAAAAATGTT-A-GTGGCCAGT--C-AAAAA--CATTACCTAA--TAA-TGAGTTGCCA-TAACTGC-ATA-CTTATGTTGTTGGAA--G---TAGAGGGTAACTGGG-CAT--CCTACAGG-CTCAA-----C-CCTGTTGCCAC-CCG-CTACTG-C--GTAGACAAGACTTGCAGGTCATGC--TG-CTG-TTTG--GGTACTCC-AATC-T-GAT----TTCCG-CTG-CCCCTCAG-TTACT---CGCCTT-AC-------C-CCCTTCGT-T-GT-CC-CCAATT-ATGGTG---CA-GT-G-CG---TTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-ATATAT-TA-TTAG-CCA-GAAATCGGATTAC------ATT--TTAAGC-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC----AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGCAAGTCTGGC--TTTACGA---TTGAA--AGGGG---AAAAgt
gi|5 : gccctttcccttgccaacattgaatgaaataaccataagactttcaaagagtttggtaatgttgcataaagagaatttaaatttataatggttaaaaaatacaagatggataaaataaaggcaatataatatttgatagtatttagacttaattttttgtgtgttttttttgttttttggacgcaataatttttataaattgaagatccacaagtccctagcaacaactggtggctttccagggcgaggtctttagttgtataacagccctagctaattatcaatcaccccagtctctagagggcacaagcgcattttctttagtcgaaaattttcccgtcataggccacgcaagtgacacaaccgaccTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCTTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--ACCT--C--AAA-----C--C--ACG-A-AG---TAAAACAG--A-----CA-C-T--ACTAGATA-T-ATGT------------A-TATGC-AAACTGACGCAGGTATT---CAC-AAACC-----TAAGTTGATA-AGTT--GACCCTTTTCAT-GG-------aaaaaannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngatgtgtttgtgaaacacgaa
gi|5 : gTGG-ANACTGACGCAGGTATT---CAC-AAACC-----TAA---------GTT--GACCCTTTTCAT-GGACCTTAGTTGGG-AT-TGTATGGC---CTGTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACAT---------GC--A------------TACT---T--A---CGTGA-TCTA-TCGGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA-CTAATCGTGTA--T-----CCGAAAACA--TGCATATGAAT-GTATTCTAACAAGATGGCTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACATGATAT-A-AATCTTAATACAAA-ATATTAAAAGATTTGAAAGAAGTAAAAAC-GTTT-TATTAAATGACTACTTTG-TAAAGCCATATTTA-TACGGAGAACA------T-----AAGCGTGATATTAC-CAATTGCTGATGTTTTTC----------AGTTTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT-GCAGA-CAATCTTaccttagttgganactgacgcaggtattcacaaacctaagttgacccttttcatggaccttagttgggattgtatggcctgtaacatatgggtctattttttggtaataattacatgcatacttacgtgatctatcgggaaagaaagtttaatcctacggcttgttgcataactaatcgtgtatccgaaaacatgcatatgaatgtattctaacaagatggctaaccctggcgactcaacgtacgcaccagaacagcatgaaacaatcgagtagatataagtacgtttttttgctatcgacagttaacatgatataaatcttaatacaaaatattaaaagatttgaaagaagtaaaaacgttttattaaatgactactttgtaaagccatatttatacggagaacataagcgtgatattaccaattgctgatgtttttcagtttctcattagtggtgttcgagtgattcgcttatgctcaaccgggtaaattccgggaaaacatgaactataagatgtttgcagtgtcaaatctacatatttgcagacaatcttt
gi|6 : gtatatttaggtacacgattaagaattttgaaggggaaaccccgctatcggtggaaatgaaccttggtcgcccatttgctaagctgaaacgataccactgagccattcctgaacatgaacactacacgtgacatcaaacctcaaaccacgaagtaaaacagacactactagatatatgtatatgcaaactgacgcaggtattcacaaacctaagttgataagttgacccttttcatggaccttagtTATA------TTTAGGTA--CACGA----TTAAGAATTTTGAA--GGGG-----AAACC-CCGCTATCGGTGGAAATGAACCCTG---GTCGCCCATTTGCTAAGCTGAAACGA-TACCACTGAGCCA----TTCCTGAACATGAACACTACACGTG-ACAT-CAA--AC----CTCAAACCTCTA--ACCACGAA--G---TAAAACAG--A-----CA-C-TAC--TAGATA-T-ATGT------------A-TATGC-AAACTGACGCAGGTATT---CACCAAACC-----TAAGTTGATA-AGTT--GACCCTTTTCAT-GGACCTTAGTTGGA-AT-TGTATGGC---C-GTAACATATG---G-GTCTATTTTTTGGTA---AT--AATTACAT---------GC--A------------TACT---T--A---GGTGA-TCTA-TCCGGAAAGAAAGTTTAATCCT-----ACGGCTTGTTGCATAA-CTAATCGGGTA--C-----CCGAAAACA--TGCATAG-AAT-GTATTCTAACAAGATG-CTAACCCTGGC-GACTC-AACGTACGCACCAGAACAG--CATGAAACAATCGAGTAGATATAAGTACG-TTTTTTTGCTATCGACAGTTAACAT-ATAT-A-AATCTTAATACAAT-ATATTAAAAGATTTGAAAGAAGTAAAAACGTTTTATA-TAAATGACTACTTTG-TAAAGCCATATTTTATACGGAGAACA------T-----AAGCGTGATATTAC-CAATTGCTGATGTTTTTC----AG-------TTCTCATTAGTGGTGTTCGAGTGAT-TCGCTTATGCTC-AACCG--GGTAAATTCCGGG--AAAAC--A------TGAACTATA-------------AG-ATGTTTGCAGTGTC---AAATCTACA-----TATTT-GCAGA-CAATCTTt
gi|7 : gGCTG--GAGGGAATCGAACTCCGATCGTCGCCCAGTTGCTAATCCAGATCGAATAC-ACACAACCAAATTTATCT----ATG-ACTTCA-A-AGA-TAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGC-A-----CATC-TACACTAGATA-TGATAT------------ACTATGCCAAACTCCCGCATGTATA---CAT---------------TTCATGCATTT--GAAGGTTTTGATTGG-------T---A-AT-GTTATGGCAAGC-GTTACATAGGCCTA-TT-----TTTTG-------------TGC------------C--A-AAT-AAAAATTTACT---T--AAGAGCTTA-TCTA-TCGAGATAGAAAGTT-AAT-AT-----AAGGTTTGTTGC-CAAATTAA-CGTGTA--CATGTGCCGCACACACATGAATAATAATAGT-TTGTAACAAGATGGCTAACCCTG-CCGATTCCAACG---GAGC--AAACAGAACATGCA-CAATCGAATGGATATCAGTACGATTTCTT-GCCATCGACAGTTAAAATAATAT-A-T-TCTTGCTACAAT-ATCCTAAAATAt
gi|8 : ttCAG-TTACT---CGCCTT-AC-------C-CTCTTCGT-T-GT-CC-CCAATT-ATGGTT---CA-GT-G-CA---GTTCCT--TCCGGCTC-CT-GGATTTCTC-----GGTATG-G-TTC----GGT-GAATGAAGCAG-AAAGAAA-T-AT-TA--TA-TTAG-CCA-GAAAACGGATTAC------ATT--GTAATA-ACTGC---A-CACATAACA-AACAG-GTTGGCATAACTATAC----AAAATATG-CCAGGAAAAGGT---AT---GCATTGTG------TTTAGGTAAGTATGGC--TTTACGA---TTGAA--AGGGG---AAGATTACTGCTGT--AGGGAATCGAACCCCG---GTCGCCCAGTTGCTAATCCAGATCGA-TACCGCACAACCAATTTTATCT----ATGACTTCCA-ATGGA-AAAT-TAA--AC----C--AAA-----A--A--AGCAA-AG---TAAAACAGCTA-----CATC-TACACTAGATA-TGATAT------------TCTATGC-AAACTCCGGCATGTATA---CAC-AAACC------AT-TTCGTGCATTT--GACGGTTTTCAT-
gi|9 : TTTTTT-GTTTA-ATTGGTAACAT-ACT---T--A---GCTGA-TTTA-TGAGGGTACCAAGTT-AACCCT-----ACTGCT-ATTCC-TAAG-TAACTAAGTAATCATGTACCCGACA-A--CCTATGA---------------AAAATGGCCAATCATG-C---------CGTACTCGTCAGAAC------TACA-----C---TAAACCTAAGTACGATTTTTCTGCCATCGATAGCTAAAG-AATATCATTATTTTGCTAAAATGAACTTAAA--ATTTAAGATAATTCAAAGT-TTTTAC-TTAAAGGAC----TTGATAAACCCATATGTA-TACGGAT-ACTTTTTTTTTTTGCG----TGACCTTAA-CAATAGCTGAT-ATTTTTTCAAAGAGGAAG-TTCTCTGTCGTGGTATTCGAGA--------------------------CACATTCCGGG-AAAAAC--ATAACCATGAACAGTA-------------ACGG-GTTTGCAGTGTT---AAATCTACtgggta
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): GTTTAGCTTGTGCAGTGATTTATTAAGGCCCTTTCCCTTGCCAACGTTGAATGAGAATAACCATAAGACTTTAATGAGTTATGATAGTGATGCGTCAAGAGAATTTAAATTTATATGGGTCAAAAATACAAGATGGATAAAATAAAGGCCATATAATGTTTGATAGTATTTAAACTTAATTTTTTTTGACGAAATAGATTTTATAAATTAAAGATCCACAAGTCCCTAGAAAAAACTGGTTTGGCTTTT
Unaligned ( gi|19 ): ATTAAGGCCTTTCCCTTGCCGAACTTGAGTGAGAATAACCATAGCTTTAATGAGTTATGAATATGTGCATCAAGAGAATTTAAATTGATATGGGTAAAAATACAAGATGGATAAATAAGGCATTAATATAATGTTTGATAGTATATGCTTGCTCACTTTTTCT
Unaligned ( gi|24 ): TTGTATAACAGCCCTAGCTCATTATCAATCGCCCCAGTCTCT
Unaligned ( gi|25 ): ATCCACAAGTCCCTAGAAAAAACTGGTGGC