lowQualScore : 1111111111111111111111111111111111111111111111111111111111
lowQualScore : 44 44444444 1 1 111 111 3333333 1 11111 11 1 55555555555555555555555555555555555555555555555555 11 111 2222222 222222222222222222 66666666666666666666666 1 11 33333 22 1 44444 1 111 3333333333333333333333333333333333333333333333333333333333 1 3333333333 11 1111 11111 4444444444444444444444 111 22222222 111 22222222 6666666666666666666666666666 11111 1111 1111 2222 2222222 1111 11111111 66666666666666666666666666666666666666666666666666666666666 111 777777777777777777777777777777777777777777777 1111 1111 222222222 1111111 11111 22222222 222 11 1 1
lowQualScore : 66 66666666 0 4 2 55 0 333 666 3 2222222 2 2 0 22222 11 8 0 77777777777777777777777777777777777777777777777777 77 444 5555555 3 6 8 888888888888888888 8 11111111111111111111111 8 2 0 33 00000 0 99 0 3 3 66666 0 444 888 6 7777777777777777777777777777777777777777777777777777777777 6 6 7777 1 66 5555555555 4 999 4 00 4 777 66 4 3333 5 44444 2222222222222222222222 9999 5 77 000 0 00000000 5 77 5 5 555 77 00000000 5 5 3 4444444444444444444444444444 5 22222 5 0000 66 888 66 7777 0 0000 8 4 4 55 8 4 4 4 55 4 4 4 7777777 4 4 66 66 5555 4 66 4 4 4 777 4 2 00000000 4 99999999999999999999999999999999999999999999999999999999999 4 000 222222222222222222222222222222222222222222222 0 0000 5 66 0000 000000000 6666666 888 4 00000 44 4 00 5 66 4 44444444 222 44 0 5 6 1 5 7 2 8 4
lowQualScore : .. ........ . . . .. . ... ... . ....... . . . ..... .. . . .................................................. .. ... ....... . . . .................. . ....................... . . . .. ..... . .. . . . ..... . ... ... . .......................................................... . . .... . .. .......... . ... . .. . ... .. . .... . ..... ...................... .... . .. ... . ........ . .. . . ... .. ........ . . . ............................ . ..... . .... .. ... .. .... . .... . . . .. . . . . .. . . . ....... . . .. .. .... . .. . . . ... . . ........ . ........................................................... . ... ............................................. . .... . .. .... ......... ....... ... . ..... .. . .. . .. . ........ ... .. . . . . . . . . .
lowQualScore : 00 33333333 0 2 5 22 0 888 000 0 5555555 0 0 0 88888 00 0 6 44444444444444444444444444444444444444444444444444 00 000 2222222 8 0 0 000000000000000000 0 66666666666666666666666 0 5 0 88 88888 2 88 0 2 2 55555 0 000 333 7 0000000000000000000000000000000000000000000000000000000000 7 7 8888 4 44 9999999999 4 888 4 66 4 888 33 4 9999 0 33333 4444444444444444444444 1111 7 99 000 1 77777777 7 99 7 7 777 99 00000000 1 7 2 0000000000000000000000000000 0 55555 0 6666 99 888 99 5555 1 4444 9 4 4 55 0 0 0 0 55 4 4 4 8888888 4 4 11 11 3333 4 11 4 4 4 888 4 7 11111111 4 66666666666666666666666666666666666666666666666666666666666 4 999 555555555555555555555555555555555555555555555 4 6666 7 99 6666 000000000 2222222 888 5 88888 77 4 44 0 11 4 22222222 333 99 2 0 7 0 0 0 2 0 0
consensus : TATCATATGTATATC-TG----CTCTT-TCGTTCANTTAC-C-CTTTTTCTA-GACTNT-------GAGTAA-TCTGTATG-TTNGA--T-AGAAATACA-TTACAA--------GAA-ATGT---AT-----T-TT-----A-TG----TTTTTTTTAACAT---AAAA---A-TTTTATTGTCATAA-TC----AA-A-T---A----TT-TATT--GAGCC--ATTAA-TGT-T--TTGGTAA-AANAATA-CCTAAGTAA-A---TTAGTAAATGAT-AAATGATTC-T--GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCCAAAAG-------------------------T----------------------A---------A-A-TG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTGA--TCCA--ACATC-A--TTTG---GAGG--------AT-CAT--A-C-AA---A--TGGATAT-------GATGTCA-GAATAAC--NAAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGTA--N-ATT-CA-A-TA--A-TG-A-T-T--AATAT-GAG-ATC-GTAATC--C--C-A-AT--ATT--TTT-T-GT-A--GAGG-AA-ACTCG-GGAT---G-ACAAC-NCAC-GTG-AC--C-----------CNT--------------CACAC-G---CGC--------------TATAT-TTAGA--TCTA---------GGCCT-ACTACATGGAA-TATCTATGC----TTTCTGCA----TCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-ATG---N-T--AGAGCTACTT-TTTTTTTTA-TGTCGG-ACAAGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTNGCCG
Reference ( gi|3 ) : TATC-CATGTATATC-TG----CTCTT-TCGTTCATTTAC-C-CTTTTTCTA-GACTTT-------GGGTGA-TCTGTATG-TCAGA--T-AGAAATACA-TTACAA--------GAA-ATGT---AT-----T-TT-----A-TG----TTTTTTTCAACAT---AAAA---A-TGTTATTGTCATAA-TC----AA-A-T---A----TT-TAT---GAGCC--ATTA--TGT-T--TTGGTAA-AACAATA-CCCAAGTAA-A---TTAGTAAA-GAT-AAATGATTCGT--GGGAATTTTAG-ATATCCCACCAAA-A-CAT-AACCCAAAAG-------------------------T----------------------A---------A-A-TG-AG-GTACGA-TCCGCTCCCC-GTTCCC---GCGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--ATGA--TCCA--ACATC-A--TTTG---GAGG--------AT-CAT--A-C-AA---A--TGGATAT-------GATGTCA-GAATAAC-TCAAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGTA--A-ATT-CA-A-TA--A-TG-A-T-T--AATAT-GAG-ATC-GTAATT--T--C-A-AT--ATT--TTC-T-GT-A--GAGG-AA-ACTCG-GGAT---G-ATAAC-CCAT-GTG-AT--T-----------CTT--------------CACAC-T---CGC--------------TATAT-TTAGG--TCTA---------TGCCT-ACTACATGGAA-TATCTATGC----TTTCCGTA----TCGAAAATT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-ATG---A-T--AGAGCTACTTATTTTTTTTT-TGTCGG-ACAAGTA-GACCGGCTATTACTGATCTTTTGTCAGACA-TTTTCAATTTTAGCCGTTGTGACCCGCTGCTGAAAATTGAAAATCTAGCCAGCCATGTACGTTATTGAAA
gi|1 : TATCATATGTATAG--TG----CTCTT-TTGTTCATTTAC-C--TTTTCCTA-CACTTT-------GAGTAA-TCTGTATG-TTAGAACTGAAAAATACAATCACAG--------AAA-ATGT---AT-----G-TG-----GGTT----TTTTTTTTAAAAT---AAAA---A--ATCA--AATATAA-TC----AGGA-TGGAA----TT-TAT---GAGCAGGATAA--TG--------GTAA-AAGAATA-CT-AAGTAA-----TGAATAA--GAT-TA-TG--TC-T--AGGTAATTTAT-GTATCCGCTCAGA-A-CA--ATCCCAAAAGTGGATATGCATTCAGTGATTGATAAT----------------------A---------ATA-TG-AATGTACGAATCCGCTCCC--GTTCC----ACG---TTAGTA-T-CAACGTCAG-AAA-GGC-A----TG--G-C-AAGCG----CT-TGT-----TTTAA------TACCAAA--GTGA--TCCA--A--TC-AATTCTG---AGGG--------AT-CAT--AGC-AA---A--TGGATAT-------GATG-CA-GAATAAC-ATAAGT-A---AGAC-----AT---A-TAAATG-CT------GATAATTAATG----A--TAGGC---A--GTG----CG-GTA--T-ATT-CA-A-TA--A-TA-A-T-T--AATTC-GAG-ATCTGTAATC--C--CCA-AT--ATT--TTTGT-GT-A--GAGG-AATACTCG-GGAT---G-ACAAC-AC-T-TCG-AC--C-----------ACT--------------CACA--T---CGCGCC-----------TATAT-TTAGA--TCTA---------GGCCTTACTAC-TGGA--CATCTATGA--------AATAATGCTCAAAAACT-AATT--TACG------AT---------TTGC-------A---ATCCT----AGA-G-ATTATTCAACCCTTAC-AGAG--AAG-ATGTTTA-T---GAGCTACTTTTTTTTTTTA-TGGTGATACAAG
gi|4 : tgttttcaaaaccttaagtttctgccagtgcatttagccgcaagttcccactttgtaggtcatttcaaaattttttaagtccaatcatcaacaaagtatatcgtttcacggtatgcgcattttattggtgttatttataATGTATATCCTGTATTCTCTTATCGTTCAAATGC-C-CCTTTTCTA-GTCTGT-------GAGTAAATCTGTATGGCCAGA--T-AGAA---CA-TTACAATGAATCAAGAACATGT---AT-----T-TT-----A-TTATTTTTTTTTTCAACAT---AAAA---ACTTTTATTGTCATAAATCCATAAA-A-T---A----TTATATT--GAGCC--ATTAAATGT-T--TTAGTAACAAGAATAACTC--GTAA-AGATTTATTAAATGAG-AAATGATTTACTGGGGAATATTAG-ATATACAATGAAA-AGCATCAACCCAAAAG-------------------------T----------------------A---------A-AATGCAG-GTAGGA-TCCGCTCCCCGGTTCCCCTGACGATCTTAG-A-T-CAACGTCGG-GAATAGC-A---ATG-------AGCG-----TATGT-----TCTAA------CAC-CAA--GTG----CCATTTCA-C-A--TT-----GAAG--------AT-TAT--A-C-AACTCAATTGGAGATAGAGCTGGAT---A-GGAT--C-TAGAAT-A------------AC---A-TAA--G-TTT-----ATTAATTA-TG----AGGTAGGG---A--GTGCA--CTTGTAATA-ATTCCA-ATTAACA-TG-A-TAT--AATA--GAG-ATC-GTAAATCCC--C-A-AT--ATTTATTC-TGGTAA--GAGGAAA-ACTGGAGGAT---G-ACAAC-CCAT-GTT-AT--T-----------CTT--------------AAAAC-T---
gi|2 : agtgtttccattgcgaaacacacttaaaaattatctgccagtcatttggcctgcagatatctcacgttgtggtaggtcattttcaaatgtggcgtcataatcaagcaaactcgtttctacaaccattgttactaatgtgttatacatcttATATATATC-AT----TTATC-TGACTCAATTAC-CACTTTTTCTA-GACTTTTTGCGGCAGGTAA-TCTGTATA-TTCAA--T-AGAAATACA-T--------------AA-ATGT---ATAAACATGTTGGAAAA-TG----TTTTTT-AAATATTTGAAAATACA-TAATACTG--AAAA-TC----AG-A-T---GGATTTT-TATTGTGAGTC--A--G--GGA-TAATTGGTAA-AAtccaactcttcacacgctgcaagtattatagaatc
gi|6 : tcattgtgatttctcccatatcatatatt-TTGTT--TCTACAC-CATTTTCTATG--TGT-------AAGTGT-TATACATT-TATGA--T-AGAGATACA-ATACAA--------GAA-ATGT---AT-----T-TT-----A-TG----TTTTTT--AACAT---AAAC---A-TTTTATTGTCATAA-TC----AA-A-T---A----TT-TAT---G--------------T-T--TTGGTAA-AACAATA-CCTAAGTAATA---TTTGTTAATGAT-AAATGATTC-T--GGGAATTTTAGGATATCCATCAAAA-A-CAT-AACCCCAAAG-------------------------T----------------------A---------A-A-TG-AG-GTACGAATCCGCTCTCC-GTTCCC---AGGA--TTAG-A-T-CATCGTCGG-AA--GGC-A---ATGTTG-CTAAGCG-C--CT-TGT-----TTTA----------------------TCAA--ACATCTA--TTTA---G-GG--------ATGCAT--A-C-AAT--A--TGGATAT-------GATGTCAAGAATAAA--CAAGT-ACGAA-ACCTAAAACTCTA-TAAATGCTTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGTAT-A-GTT-CA-A-TA--A-TG-A-T-T--GATAT-GAG-A-C-GTACTG--TGGC-GCATCCATT--TTT-T-GT-A--GATG-AA-ACTCG-GGAT---G-ACAAA-CCAT-GTG-AT--TTTAACTTCGACCTT--------------CACAC-G---CGC--------------TATAT-TTAGA--TCTAGGCCATCTATGCTT---------------TCT-------------GTA----TCGAAAATT-GATTTATACGT----GAA---------TTGCAATGATGA---ATCCT----AGT-ATATTATggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|5 : agtgtttgcgaaacttaaaaatttctgccaggcattttggcctgcaagttctccattttgtaggtcattttcaaaatgtgttagtcatcaacaagcaa--T-AGAA-TACA-T--------------AA-CTGTCACAA-----T-TC-----A-TG----TTTTTTTTAACAT---AAAA---A-TTTTATTGTCATAA-TC----AA-AAT---A----TT-TAT---GAGCC--ATTAA-TATGT--TTGGTAA-AACAATA-CCTAAGTAA-A---TTAGTAAT-GATAAAATGATTC-T---GGAATTTTAG-ATATCCCATCAAACC-CAT-AACCCCAAAG-------------------------T----------------------A---------A-A-TG-AG-GTACGA-TCCGCTCCCC-GTTCCC----CGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAG--ATGA--TCCA--A-ATC-A--TTTG---GAGG--------AT-CAT--A-C-AA---A---GGATA--------GATGTCA-GAATAAC-ATAAGT-----A-AC-----AT---A-TAAATG-TTT-----AATCATTA-T-----A--TAGGG---A--GTG----CCTGTA--T-ATT-CA-A-TA--A-TGAA-T-T--AATAT-GAGTATC-ATAATC--C--C-A-AT--ATT--TTT----T-A--GAGG-AA-ACTCG-GGAC---G-ACAAC-CCAT-GTGAAT--T-----------TTTTAACTTCGACCTTACACAT-G---CGC--------------TATAT-TTAGA--TCTA---------GGC----------------ATCTATGC----TTTCTGTA----TCGAAAATT-GATT--AACGT----GAC---------TTGC-------AATGATGAT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-ATG---A-TTAAGAGCTAC---TTTTTTTTA-TGTCGG-ACAAGTAGGACC-GCTATGACTGAACTTTTGTCGGACATTTTTCAATTTTAGCCGa
gi|16 : tgtaaatttacctgctgactttaatcttattgaaaaccctgCCCTTCAGA-A-CAT-AACCCAAAAG-------------------------TGGTATGATCAGTGATTGATAATA---------A-A-TG-AC-ATACGA-TCCGCTCCCA-GTTCCC---GCGG--CTAG-A-T-CAATGTCAG-AA--GGC-A---ATGT-G-CTAAGgtaaatcgacagaaccgacaagtttcgcaaacactg
gi|8 : AGA-A-CAT-AACCCAAAAG-------------------------T----------------------GGGTATGATCA-A-TG-GT-GTACGA-TCCGCTCCCC-GTTCCC---ACT---TTAG-AATGCAACATCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TT-AA------TAC-AGG---TGA--TCCA--ACATT-A--TTTG---GAGG--------AT-CAT--A-C-AA---A--TGGATAT-------GATGTCA-GAATAAC-----------------------------AAATG-TTT-----AATAATTA-TG----A--TAGGA---A--GTG----CCTG-A--T-ATT-CA-A-TA--A-TA-A-T-T--AATAT-GAG-ATC-GTAA-T--C--C-A-AT--ATT--TT--T-GT-A--GAGG-AA-ACTCG-GGAT---G-ACAA---CAC-TTG-A---C-----------CAT--------------CACAC-G---CGT--------------TATAT-TT
gi|7 : A-TCCGCTCCCT-GTT-----------------A----AACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAT------TA----------A--TCAA--ATGTC-A--GTTG---GAAG--------AT-CAT--A-C-AA---A--TGAATAT-------GATGTCA-GATTAAC-TTAAGT-A---A-AC-----AT---A-TAAATC-CTT-----GATAATTA-TG----A--TACGA---A--GTG----CCTGCA--T-ATT-CA-G-TA--A-TG-A-T-T--AATAT-GAG-ATC-GTAACC--C--C-A-AT--A-T--TTC-T-GT-A--GAGG-AG-ACTCG-GGATCGGG-ATGACAACAC-ATT-AT--TTCGAC------CTT--------------CACTT-G---CGC--------------TATAT-TTAGA--TCTA---------GGCCT-AGTACATGGAA-TATCTATGC----TTTCTGCA----TCGAga
gi|2 : tatgcatcctcgtcagttcaaggtgatgagctctttgaatcgctaataaaatgttaaGCTACCC-ATTCC----ACTG--TTAG-A-TGTAACATCGGGAA--GGC-A---ATGT-GGTTAAGCGGTGACT-TATGTTTTTTTAAAATTTATAC-AAATTGTGAGTCCCA--ACATC-A--TTTGGCTGAGGTGAAAGGAAT-CATTGA-CAAA---A--TTAATTG-------GATGACA-AAAT-------------------------T---A-TAAATG-TTC-----ATAAATTA--GACATA--TAGGGTAAA--G---------GTA--ACATTATA-A-TA--A-TG-G-T-T--
gi|25 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccgTAG-A-T-CAACGTCAG-AA--GGCTATATATGT-G-CTAAGCGGC--CT-Tttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|10 : AATAACATAAAGTTA---A-AT-----AC---GGTACATT-TTTTTTTTAATAATTG-TG----A--TTGGG---ACAGTGGCCCCCTGTA--T-ATT-CA-A-TA--AGTG-A-T-T--ACTATAGAG-ATC-GTAATCC-T--C-G-AT--ATT--TTT-T-AT-A--GAGG-AA-ACTCG-AGAT---GAACAAC-AAAC-GTG-A
gi|2 : TG--A-ATT-CATA-TA--GGTA-AAT-TGAAATAT--AG-ATC-GTAATC-----C-A-AT--AGT--CTT-T-GT-AAAGGGG-AA-ACTCG-GGAT---T--TAAG-CACTGGTG-ACGAC-----------CAT--------------CACACGTGGGCGCATGCTTGGAAGGGATATATCTTAGGAATCTA---------CAC----TTACATGGAATTATCTATGCAAAATCT-GGCA----TCAAAAACTAGATT--TACGTTGGAGATTTTGAAGTGTTAC-------A---CTTCTATAAAAT-A-GTTAT---A-TGTTATTAGGA--GAGCAT----A-T--A---TTACTCCTTTTTTTTA-TGattaaattttgtaacactg
gi|9 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataaA--A-TA-A-T-T--A---T-GAG-ATC-GTAATC--C--C-A-AT--ATA--TT--T-GT-A--GAGG-AA-ACTCG-GGAT---G-ACAAC-AC-T-TCG-AC--------------CAT--------------CGCAT-G---CGC--------------TATAT-TTAGA--TCTA---------GGCCT-ACTACATGGAA-TA---AT---------CTGCA----TCAAAAACT-AATT--TACGT----GAT---------TTGC-------A---ATCCT----AGG-A-ATTATTCAA-CCTTACTAGAA--AAA-ATG---T-A--AGAGCTACTT-TTTTTTgtgaggac
gi|11 : GT--------------TATAT-TTAGA--TCTA---------GGCCT-ACTGCATG------------C----TTTCTGCA----TCAAGAATT-AATT--TATAT----GAT---------GTGC-------A---AAGCT-----GTAA-ATTATTTAA-TTTT-TTAGAAAGAAA-ATG---GTT--AGTGCCACTTaatgtataatgtgagacaactcacaagtagtagaccgtttatc
gi|12 : gacaagttaaccaagacatggC--------------TAAAT-TTAGA--TTTA---------GGTCT-ACTACAT--CA-TATCTATGCAA--AATCTGCA----TCAAAAACT-AATT--TATGT----GAT---------TTGG-------A---AT------------------------CTTACTAGAA--GAA-ATG---T-T--AGAGCTAC----TTTTTTTA-AGTGAG-ACTAGTA-GACCG
gi|15 : TT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTTAA-CCATACTAGAA--GAA-ATA---T-C--ATAGCTACTTTTTTTTTTCA-TGTCGG-ACAATTA-GACCGGCTATGACTGAACTTTTGTCGGAt
gi|26 : -A-ATTATTCAA-CCTTACTAGAA--GAA-ATGAT-A-T--AGAGCTA
gi|24 : TAGAA--GAA-ATG---T-T--AGAGCTACT--TTTTTTTAA-TGTGAG-ACAAGT
gi|17 : TACTTTTTTATATGTCAG-ACAAGTA-AACCAGCTATGACTGAACTTTTGTCAAACA-TTTTAAATTTTTGCCG
gi|20 : TTTTTTTTT-TGTTGG-ACAAGGA-AACCGGCTATGACCAAACTTTTGTCAGACA-TCTTCAATTTTTGCgtaaatccgaaaagttttgcaaccactgt
gi|18 : t-TGTCAG-ACATGAA-GACCGACTAAGACTTAACTTTTGTTTCATA-TATTCAATTTT
gi|21 : taCA-TTTTCAATTTTAGCCGtacaggcaaatctgataaaacagacaagtttcgcaaacact
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|13 ): TGTTTGCGAAACTTAAAAATTTCTGCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTTGTAGGTCATTTTCAAAATGTGTCAGTCATCAACAAGCAATCGTTTCTACACCATTTCTATGTGTTGTA
Unaligned ( gi|14 ): TGTTTGCGAAACTTAAAAATTTCTGCCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTCATAGGTCATTTTCAAAATGTGACAGTCATCAACAAGCAATCGTTTCTACGCCATTTTCTGT
Unaligned ( gi|19 ): GTGTTTGACGAAACTTTAAAAATTCCTGCCAGTCATTTTGGCTGCAAGTTCTCCACTTTTGATTGGTCATATT
Unaligned ( gi|22 ): AGAATTTGTCAGTCATCAACAAAGCATCGTTTCTACGCCAATTTCTAAGTG
Unaligned ( gi|23 ): TTTAGCCAGTAAATCCGACAGAACCGACAAATTTCGCAAACACTGAAAGA
Unaligned ( gi|27 ): AGTGTTTGCGAAACTTAAAAAATTCTGCC
Alignments
lowQualScore : 1 222222222 1 22222 2222222 111111111 22222222 111 1111 22222222 111 1111 1111 2222 11111111 222222222222222222222 111 22222 11 11 9999999999999999999999999999999999999999999999999999999999999 1 2222222222 11111 5555555555555555555555555555555555555 11111111 55555555555555555555555555 11111 1111 111111111 11111 111111 11 888888888888888888888888888888888888888 111111111 111111 1111 111111111 1111111 11111111 11111 111111 1111111111
lowQualScore : 9 0 777777777 0 55555 1 8 8 999 1 6666666 8 8 33 99 6 44 777777777 44444444 111 3333 44444444 111 2 4444 6 4444 3 6 0000 6 99999999 6 777777777777777777777 6 1 111 0 22222 6 66 8 0 0 11 8 11 8 22 555 5 5 8888888888888888888888888888888888888888888888888888888888888 5 5 0 44 1111111111 4 4 8 4 99 4 777 44 4 1 66 4 22222 1111111111111111111111111111111111111 66 66 5 66 888 88888888 5 66 5 5 3 0 77 44444444444444444444444444 4 4 11111 4 9999 66 777 66 5555 4 777 4 8 4 55 4 4 4 4 4 4 666666666 55 888 3 11111 4 55 4 4 111111 4 4 22 7777 333333333333333333333333333333333333333 1 4 888888 4 3 3 3 666666666 4 66 4 777 1 666666 6666 4 4 5 66 9999 777777777 4444444 777 2 9999 4 4 4 55 4 11111111 4 44444 111111 3 0 4 7777777777 5 2 8 1
lowQualScore : . . ......... . ..... . . . ... . ....... . . .. .. . .. ......... ........ ... .... ........ ... . .... . .... . . .... . ........ . ..................... . . ... . ..... . .. . . . .. . .. . .. ... . . ............................................................. . . . .. .......... . . . . .. . ... .. . . .. . ..... ..................................... .. .. . .. ... ........ . .. . . . . .. .......................... . . ..... . .... .. ... .. .... . ... . . . .. . . . . . . ......... .. ... . ..... . .. . . ...... . . .. .... ....................................... . . ...... . . . . ......... . .. . ... . ...... .... . . . .. .... ......... ....... ... . .... . . . .. . ........ . ..... ...... . . . .......... . . . .
lowQualScore : 8 0 555555555 0 00000 0 0 0 000 0 0000000 0 0 22 22 7 88 333333333 22222222 777 5555 22222222 777 5 2222 7 2222 2 7 8888 7 33333333 7 777777777777777777777 7 0 777 8 88888 0 44 0 8 8 00 0 22 0 00 999 7 7 3333333333333333333333333333333333333333333333333333333333333 7 7 0 66 6666666666 0 0 0 0 55 0 000 88 0 1 11 4 55555 6666666666666666666666666666666666666 99 55 0 99 888 11111111 0 99 0 0 2 1 55 22222222222222222222222222 4 4 11111 4 4444 11 888 11 6666 4 111 4 9 4 55 0 0 0 0 0 0 000000000 55 000 2 88888 0 55 0 0 555555 0 0 77 5555 111111111111111111111111111111111111111 0 4 999999 0 6 6 6 000000000 4 11 4 888 8 222222 9999 4 4 0 11 4444 888888888 4444444 888 9 4444 0 0 4 55 0 77777777 0 66666 555555 6 7 0 5555555555 0 2 0 0
consensus : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTAC-C-CTTTTTCTA-GACTTT-------GAGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTG---GAGG--------AT-CAT--A-CAA-ATGGATATGATGTC-AGAATAAC-N--AAGT---AA-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-A--TA-TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCA-C--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-AT-G--TT--A-GAGCTAC-T-T-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
Reference ( family-2936 ) : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTAC-C-CTTTTTCTA-GACTNT-------GAGT-AATCTGTAT-GTTNGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTG---GAGG--------AT-CAT--A-CAA-ATGGATATGATGTC-AGAATAAC-N--AAGT---AA-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-A--NA-TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACNCA-C--GT----------------G---------AC-----------CCNT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-AT-G--NT--A-GAGCTAC-T-T-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTNGCCG
gi|1 : TATCATATGT-ATAG--TG----CTCTT-TTGT-----TCATTTAC-C--TTTTCCTA-CACTTT-------GAGT-AATCTGTAT-GTTAGAACTGAAAAATACAATCACAG-AAA--------ATGT---ATGT-GGGTTTT--------TTTTTT---AAAATA----AAAA-ATC----AAAT---AT-AATC----AGGATGGAA----TT-TAT-G--AGCAGGA--T-AATG------GTAA-AAGA---ATAC-TAAGTAA-----TGAATAA--GAT-TA-TG--T--C-T-AGGTAATTTAT-GTATCCGCTCAGA-A-CA--ATCCCAAAAGTGGATATGCATTCAGT----------------------G---------ATTGATAATAATATG-AATGTACGAATCCGCTCCC--GTTCC----ACG---TTAGTA-T-CAACGTCAG-AAA-GGC-A----TG--G-C-AAGCG----CT-TGT-----TTTAA------TACCAAA--GTG-------------------A--TCCAA--TC-AATTCTG---AGGG--------AT-CAT--AGCAA-ATGGATATGATG-C-AGAATAAC-AT-AAGT---AAGAC-----AT---A-TAAATG-CT------GATAATTAATG----A--TAGGC---A--GTG----CG-GT-A--TA-TT-CAA-TA--A-TA-AT-TAATTC-GAG-ATCTGTA---------A--TCC-CCAATATTTTTGT---GT-A--GAGG-AATAC------TCG-GGATG-ACAAC--A-C--TTC---------------G---------AC-----------CACT-CACATC----GC-GCCTA-TATT-TAG---------ATC-TAGG--CCTTAC---TAC-TGGA--CATCTATGA--AATAAT-GC-TCAAAAACT-AATT--TACG------AT---------TTGC-------A---ATCCT----AGA-G-ATTATTCAACCCTTAC-AGAG--AAG-AT-GT-TT--ATGAGCTACTT-T-TTTTTT------TT-ATGGTGATACA----------AG
gi|10 : tgttttcaaaaccttaagtttctgccagtgcatttagccgcaagttcccactttgtaggtcatttcaaaattttttaagtccaatcatcaacaaagtatatcgtttcacggtatgcgcattttattggtgttatttataAATAAC-ATAAAGTT--AA-AT-----AC---GGTACATT-TTTTTTTTAATAATTG-TG----A--TTGGG---ACAGTGGCCCCCTGT-A--TA-TT-CAA-TA--AGTG-AT-TACTATAGAG-ATC-GTA---------A--TCCTC-GATATTTTT-T---AT-A--GAGG-AA-AC------TCG-AGATGAACAACAAA-C--GT----------------G---------A
gi|11 : ACA-T----GG-GT-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TGCATG------------C--TTTC-T-GCATCAAGAATT-AATT--TATAT----GAT---------GTGC-------A---AAGCT-----GTAA-ATTATTTAA-TTTT-TTAGAAAGAAA-ATGG--TT--A-GTGCCAC-T-T-attaaattttgtaacactg
gi|12 : gacaagttaaccaagC-TA-AATT-TAG---------ATT-TAGG--TCT-AC---TACAT--CA-TATCTATGCAAAATC-T-GCATCAAAAACT-AATT--TATGT----GAT---------TTGG-------A---AT------------------------CTTACTAGAA--GAA-AT-G--TT--A-GAGCTAC------TTTTT------TT-AAGTGAG-ACT----------AGTA-GACCG
gi|15 : TT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTTAA-CCATACTAGAA--GAA-AT-A--TC--A-TAGCTAC-T-T-TTTTTT------TTCATGTCGG-ACA----------ATTA-GACCGGCTATGACTGAACTTTTGTCGGAt
gi|16 : CCCTTCAGA-A-CAT-AACCC-AAA--------------AGTGGTATGATCAGTGATTGATAATA---------A-----------ATG-AC-ATACGA-TCCGCTCCCA-GTTCCC---GCGG--CTAG-A-T-CAATGTCAG-AA--GGC-A---ATG-TG-CTAAG
gi|17 : -TTTTTT------AT-ATGTCAG-ACA----------AGTA-AACCAGCTATGACTGAACTTTTGTCAAACA-TTTTAAATTTTTGCCG
gi|18 : tacT-ATGTCAG-ACA----------TGAA-GACCGACTAAGACTTAACTTTTGTTTCATA-TATTCAATTTTTACgtaaatccgaaaagttttgcaaccactgt
gi|2 : TATCATATATTATATA-TA-----TCAT-TTATCTGACTCAATTAC-CACTTTTTCTA-GACTTTTTGCGGCAGGT-AATCTGTAT-ATTCAA--T-AGAAATACA-T-------AA--------ATGT---ATAAACA-TGTTGGAAAATGTTTTTT---AA-ATATTTGAAAA-TACATAATACTG--AA-AATC----AG-AT---GGATTTT-TATTGTGAGTCAGGGAT-AAT-----TGGTAA-AAGGAATATACCTaggcaaatctgataaaacagacaagtttcgcaaacact
gi|2 : tcattgtgatttctcccaGCTACCC-ATTCC----ACTG--TTAG-A-TGTAACATCGGGAA--GGC-A---ATG-TGGTTAAGCGGTGACT-TATGTTTTTTTAAAATTTATAC-AAATTGTG-------------------AGTCCCAACATC-A--TTTGGCTGAGGTGAAAGGAAT-CATTGA-CAA-A---AT-TAAT-T---GGATGAC-A--AAAT--------------T---A-TAAATG-TTC-----ATAAATTA--GACATA--TAGGGTAAA--G---------GTAA--CA-TTATAA-TA--A-TG-GT-Tcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|2 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccgAATAT--AG-ATC-GTA---------A--TCC---AATAGTCTT-T---GT-AAAGGGG-AA-AC------TCG-GGATT--TAA-GCA-CTGGT----------------G---------ACGA---------CCAT-CACA-CGTGGGC-GC--A-TGCT-TGGAAGGGATATATCTTAGGAATCT-ACACTTACATGGAATTATCTATGCAAAATC-TGGCATCAAAAACTAGATT--TACGTTGGAGATTTTGAAGTGTTAC-------A---CTTCTATAAAAT-A-GTTAT---A-TGTTATTAGGA--GAGCAT----AT--A----TTAC-TCC-TTTTTT------TT-ATGttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|20 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattga-T-T-TTTTTT------TT--TGTTGG-ACA----------AGGA-AACCGGCTATGACCAAACTTTTGTCAGACA-TCTTCAATTTTTGCgtgaggac
gi|24 : TAGAA--GAA-AT-G--TT--A-GAGCTAC---T-TTTTTT------TA-ATGTGAG-ACA----------AGT
gi|25 : TAG-A-T-CAACGTCAG-AA--GGCTATATATG-TG-CTAAGCGGC--CT-T
gi|26 : -A-ATTATTCAA-CCTTACTAGAA--GAA-AT-GATAT--A-GAGCTA
gi|3 : TATC-CATGT-ATATC-TG----CTCTT-TCGT-----TCATTTAC-C-CTTTTTCTA-GACTTT-------GGGT-GATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTC---AACATA----AAAA-TGT----TATTGTCAT-AATC----AA-AT---A----TT-TAT-G--AGCCAT---T-A-TGT-TTTGGTAA-AACA---ATACCCAAGTAA-A---TTAGTAAA-GAT-AAATGATT--CGT-GGGAATTTTAG-ATATCCCACCAAA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---GCGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--ATG-------------------A--TCCAACATC-A--TTTG---GAGG--------AT-CAT--A-CAA-ATGGATATGATGTC-AGAATAAC-TC-AAGT---AA-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-A--AA-TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TTT-C-AATATTTTC-T---GT-A--GAGG-AA-AC------TCG-GGATG-ATAACCCA-T--GT----------------G---------AT-----------TCTT-CACA-C----TC-GC-TA-TATT-TAG---------GTC-TATG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-C-GTATCGAAAATT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-AT-G--AT--A-GAGCTAC-T-TATTTTTT------TT-TTGTCGG-ACA----------AGTA-GACCGGCTATTACTGATCTTTTGTCAGACA-TTTTCAATTTTAGCCG
gi|4 : ATCTTATGT-ATATCCTGTATTCTCTTATCGT-----TCAAATGC-C-CCTTTTCTA-GTCTGT-------GAGTAAATCTGTATGGCCAGA--T-AGA---ACA-TTACAATGAATCAAGAACATGT---ATTT-TATTATT--------TTTTTTTTCAACATA----AAAACTTT----TATTGTCATAAATCCATAAA-AT---A----TTATATTG--AGCCAT---TAAATGT-TTTAGTAACAAGA---ATAACT-CGTAA-AGATTTATTAAATGAG-AAATGATTTAC-TGGGGAATATTAG-ATATACAATGAAA-AGCATCAACCC-AAA--------------AGTA---------------------A---------A-----------ATGCAG-GTAGGA-TCCGCTCCCCGGTTCCCCTGACGATCTTAG-A-T-CAACGTCGG-GAATAGC-A---ATG-------AGCG-----TATGT-----TCTAA------CAC-CAA--GTGCCATTTCACATTGAAGATTA--TACAAC-TC-A--ATTG---GAG-------------AT--A-GAG-CTGGATAGGATCT--AGAATA-----------------------AC---A-TAA--G-TTT-----ATTAATTA-TG----AGGTAGGG---A--GTGCA--CTTGT-AATAA-TTCCAATTAACA-TG-ATATAATA--GAG-ATC-GTA---------AATCCC-C-AATATTTAT-TCTGGTAA--GAGGAAA-AC------TGGAGGATG-ACAACCCA-T--GTTATTCTTAAAACTTCCA---------AC-----------TCTT-CACA-C----GCTGC-AAGTATTATAG---------Attgtgacccgctgctgaaaattgaaaatctagccagccatgtacgttattgaaa
gi|5 : agtgtttccattgcgaaacacacttaaaaattatctgccagtcatttggcctgcagatatctcacgttgtggtaggtcattttcaaatgtggcgtcataatcaagcaaactcgtttctacaaccattgttactaatgtgttatac--T-AGAA-TACA-T-------AA--------CTGTCACAATT-CA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATCA---AA-AT---A----TT-TA-TG--AGCCAT---T-AATATGTTTGGTAA-AACA---ATACCTAAGTAA-A---TTAGT-AATGATAAAATGATT--C-T--GGAATTTTAG-ATATCCCATCAAACC-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC----CGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAG--ATG-------------------A--TCCAA-ATC-A--TTTG---GAGG--------AT-CAT--A-CAA-A-GGATA-GATGTC-AGAATAACAT--AAGT----A-AC-----AT---A-TAAATG-TTT-----AATCATTA-T-----A--TAGGG---A--GTG----CCTGT-A--TA-TT-CAA-TA--A-TGAAT-TAATAT-GAGTATC-ATA---------A--TCC-C-AATATTTTT------T-A--GAGG-AA-AC------TCG-GGACG-ACAACCCA-T--GT----------------GAATTTTTTAACTTCGA------CCTTACACA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--C-------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATT--AACGT----GAC---------TTGC-------AATGATGAT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA-AT-G--ATTAA-GAGCTAC-----TTTTTT------TT-ATGTCGG-ACA----------AGTAGGACC-GCTATGACTGAACTTTTGTCGGACATTTTTCAATTTTAGCCGatc
gi|6 : tgtaaatttacctgctgactttaatcttattgaaaaccctgTACAC-CATTTTCTATG--TGT-------AAGT-GTTATACAT-TTATGA--T-AGAGATACA-ATACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTT-----AACATA----AACA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TAT------------------GT-TTTGGTAA-AACA---ATACCTAAGTAATA---TTTGTTAATGAT-AAATGATT--C-T-GGGAATTTTAGGATATCCATCAAAA-A-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGAATCCGCTCTCC-GTTCCC---AGGA--TTAG-A-T-CATCGTCGG-AA--GGC-A---ATGTTG-CTAAGC-GC--CT-TGT-----TTT---------------------------------------A--TCAAACATCTA--TTTA---G-GG--------ATGCAT--A-CAATATGGATATGATGTCAAGAATAAA-C--AAGTACGAA-ACCTAAAACTCTA-TAAATGCTTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-A--TAGTT-CAA-TA--A-TG-AT-TGATAT-GAG-A-C-GTACTGTGGCGCA--TCC------ATTTTT-T---GT-A--GATG-AA-AC------TCG-GGATG-ACAAACCA-T--GT----------------G---------ATTTTAACTTCGACCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CC------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATTTATACGT----GAA---------TTGCAATGATGA---ATCCT----AGT-ATATTATgtaaatcgacagaaccgacaagtttcgcaaacactg
gi|7 : agtgtttgcgaaacttaaaaatttctgccaggcattttggcctgcaagttctccattttgtaggtcattttcaaaatgtgttagtcatcaacaagcaattgtttcA-TCCGCTCCCT-GTT-----------------A----AACGTCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TTTAT------TA-----------------------------A--TCAAATGTC-A--GTTG---GAAG--------AT-CAT--A-CAA-ATGAATATGATGTC-AGATTAAC-TT-AAGT---AA-AC-----AT---A-TAAATC-CTT-----GATAATTA-TG----A--TACGA---A--GTG----CCTGC-A--TA-TT-CAG-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--CCC-C-AATA-TTTC-T---GT-A--GAGG-AG-ACTCGGGATCG-GGATG-ACAACACATT--ATTTC-------------G---------A------------CCTT-CACT-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AG---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAa
gi|8 : tatgcatcctcgtcagttcaaggtgatgagctctttgaatcgctaataaaatgttaaAGA-A-CAT-AACCC-AAA--------------AGT----------------------GGGTATGATCA-----------ATG-GT-GTACGA-TCCGCTCCCC-GTTCCC---ACT---TTAG-AATGCAACATCGG-AA--GGC-A---ATG-TG-CTAAGCGGC--CT-TGT-----TT-AA------TAC-AG---GTG-------------------A--TCCAACATT-A--TTTG---GAGG--------AT-CAT--A-CAA-ATGGATATGATGTC-AGAATAAC-----------------------------AAATG-TTT-----AATAATTA-TG----A--TAGGA---A--GTG----CCTG--A--TA-TT-CAA-TA--A-TA-AT-TAATAT-GAG-ATC-GTA---------A--T-C-C-AATA-TTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAA--CA-C--TT----------------G---------A------------CCAT-CACA-C----GC-GT-TA-TATT-T
gi|9 : A--A-TA-AT-TA---T-GAG-ATC-GTA---------A--TCC-C-AATATATTT-----GT-A--GAGG-AA-AC------TCG-GGATG-ACAAC--A-C--TTC---------------G---------AC-----------C-AT-CGCA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TA---AT-------C-T-GCATCAAAAACT-AATT--TACGT----GAT---------TTGC-------A---ATCCT----AGG-A-ATTATTCAA-CCTTACTAGAA--AAA-AT-G--TA--A-GAGCTAC-T-T-TTTTTTAATGTATA-ATGTGAG-ACAACTCACAAGTAGTA-GACCGTTTATga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTTTGCGAAACTTAAAAATTTCTGCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTTGTAGGTCATTTTCAAAATGTGTCAGTCATCAACAAGCAATCGTTTCTACACCATTTCTATGTGTTGTA
Unaligned ( gi|14 ): TGTTTGCGAAACTTAAAAATTTCTGCCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTCATAGGTCATTTTCAAAATGTGACAGTCATCAACAAGCAATCGTTTCTACGCCATTTTCTGT
Unaligned ( gi|19 ): GTGTTTGACGAAACTTTAAAAATTCCTGCCAGTCATTTTGGCTGCAAGTTCTCCACTTTTGATTGGTCATATT
Unaligned ( gi|21 ): CATTTTCAATTTTAGCCGGTAAATCCCACAGAACCGACAAGTTTCACAAACACTGTATA
Unaligned ( gi|22 ): AGAATTTGTCAGTCATCAACAAAGCATCGTTTCTACGCCAATTTCTAAGTG
Unaligned ( gi|23 ): TTTAGCCAGTAAATCCGACAGAACCGACAAATTTCGCAAACACTGAAAGA
Unaligned ( gi|27 ): AGTGTTTGCGAAACTTAAAAAATTCTGCC
Alignments
lowQualScore : 1 222222222 1 22222 11 3333333 1 1 111111111 22222222 111 1111 22222222 111 1111 1111 2222 11111111 222222222222222222222 111 22222 11 11 9999999999999999999999999999999999999999999999999999999999999 1 2222222222 1111 11111 55555555555555555555555555555555555555555 2222222222 555555555555555555555555555 11111 1111 11 111111111 11111 111111 11 888888888888888888888888888888888888888 111111111 111111 1111 111111111 1111111 1 111111 1111111111
lowQualScore : 9 0 777777777 0 55555 1 22 2222222 0 0 99 6 44 777777777 44444444 111 3333 44444444 111 2 4444 6 4444 3 6 0000 6 99999999 6 777777777777777777777 6 1 111 0 22222 6 66 8 0 0 11 8 11 8 22 555 5 5 8888888888888888888888888888888888888888888888888888888888888 5 5 0 44 1111111111 4 4 8 4 99 4 777 44 4 0000 4 22222 22222222222222222222222222222222222222222 66 5 66 1111111111 5 5 66 5 5 3 0 2 5 444444444444444444444444444 4 4 11111 4 9999 66 777 66 5555 8 00 4 4 55 4 4 4 4 4 4 666666666 55 888 3 11111 4 55 4 4 111111 4 4 77 55 222222222222222222222222222222222222222 1 4 888888 4 3 3 3 666666666 4 66 4 777 1 666666 6666 4 4 5 66 9999 777777777 4444444 777 2 9999 4 4 4 55 777 4 2 4 4 4 99 3 111111 4 0 4 7777777777 5 2 8 1
lowQualScore : . . ......... . ..... . .. ....... . . .. . .. ......... ........ ... .... ........ ... . .... . .... . . .... . ........ . ..................... . . ... . ..... . .. . . . .. . .. . .. ... . . ............................................................. . . . .. .......... . . . . .. . ... .. . .... . ..... ......................................... .. . .. .......... . . .. . . . . . . ........................... . . ..... . .... .. ... .. .... . .. . . .. . . . . . . ......... .. ... . ..... . .. . . ...... . . .. .. ....................................... . . ...... . . . . ......... . .. . ... . ...... .... . . . .. .... ......... ....... ... . .... . . . .. ... . . . . . .. . ...... . . . .......... . . . .
lowQualScore : 8 0 555555555 0 00000 0 55 5555555 0 0 22 7 88 333333333 22222222 777 5555 22222222 777 5 2222 7 2222 2 7 8888 7 33333333 7 777777777777777777777 7 0 777 8 88888 0 44 0 8 8 00 0 22 0 00 999 7 7 3333333333333333333333333333333333333333333333333333333333333 7 7 0 66 6666666666 0 0 0 0 55 0 000 88 0 1111 4 55555 99999999999999999999999999999999999999999 55 0 99 9999999999 0 0 99 0 0 2 1 5 0 222222222222222222222222222 4 4 11111 4 4444 11 888 11 6666 9 66 4 4 55 0 0 0 0 0 0 000000000 55 000 2 88888 0 55 0 0 555555 0 0 55 55 000000000000000000000000000000000000000 0 4 999999 0 6 6 6 000000000 4 11 4 888 8 222222 9999 4 4 0 11 4444 888888888 4444444 888 9 4444 0 0 4 55 000 0 0 0 0 0 77 6 555555 0 7 0 5555555555 0 2 0 4
consensus : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-N--AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
Reference ( family-2936 ) : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GAGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-N--AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
gi|1 : TATCATATGT-ATAG--TG----CTCTT-TTGT-----TCATTTACC--TTTTCCTACACTTT-------GAGT-AATCTGTAT-GTTAGAACTGAAAAATACAATCACAG-AAA--------ATGT---ATGT-GGGTTTT--------TTTTTT---AAAATA----AAAA-ATC----AAAT---AT-AATC----AGGATGGAA----TT-TAT-G--AGCAGGA--T-AATG------GTAA-AAGA---ATAC-TAAGTAA-----TGAATAA--GAT-TA-TG--T--C-T-AGGTAATTTAT-GTATCCGCTCAGA-A-CA--ATCCCAAAAGTGGATATGCATTCAGT----------------------G---------ATTGATAATAATATG-AATGTACGAATCCGCTCCC--GTTCC----ACG---TTAGTA-T-CAACGTCAG-AAA-GGC-A----TG--G-C-AAGCG----CT-TGT-----TTTAA------TACCAAA--GTG-------------------A--TCCAA--TC-AATTCTGA----------GGGA-T-CAT--AGCAA-ATGGATATGATG-CA-GAATAAC-AT-AAGT-A---AGAC-----AT---A-TAAATG-CT------GATAATTAATG----A--TAGGC---A--GTG----CG-GT-ATA--TT-CAA-TA--A-TA-AT-TAATTC-GAG-ATCTGTA---------A--TCC-CCAATATTTTTGT---GT-A--GAGG-AATAC------TCG-GGATG-ACAAC--AC--TTC---------------G---------AC-----------CACT-CACATC----GC-GCCTA-TATT-TAG---------ATC-TAGG--CCTTAC---TAC-TGGA--CATCTATGA--AATAAT-GC-TCAAAAACT-AATT--TACG------AT---------TTGC-------A---ATCCT----AGA-G-ATTATTCAACCCTTAC-AGAG--AAG---AT-GTT-T-ATGAGCTACTTT-TTTTTT------TT-ATGGTGATACA----------AG
gi|10 : tgttttcaaaaccttaagtttctgccagtgcatttagccgcaagttcccactttgtaggtcatttcaaaattttttaagtccaatcatcaacaaagtatatcgtttcacggtatgcgcattttattggtgttatttataAATAAC-ATAAAGTTA---A-AT-----AC---GGTACATT-TTTTTTTTAATAATTG-TG----A--TTGGG---ACAGTGGCCCCCTGT-ATA--TT-CAA-TA--AGTG-AT-TACTATAGAG-ATC-GTA---------A--TCCTC-GATATTTTT-T---AT-A--GAGG-AA-AC------TCG-AGATGAACAACAAAC--GT----------------G---------A
gi|11 : ACA-T----GG-GT-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TGCATG------------C--TTTC-T-GCATCAAGAATT-AATT--TATAT----GAT---------GTGC-------A---AAGCT-----GTAA-ATTATTTAA-TTTT-TTAGAAAGAAA---ATGG-T-T-A-GTGCCAC-TT-attaaattttgtaacactg
gi|12 : gacaagttaaccaagC-TA-AATT-TAG---------ATT-TAGG--TCT-AC---TACAT--CA-TATCTATGCAAAATC-T-GCATCAAAAACT-AATT--TATGT----GAT---------TTGG-------A---AT------------------------CTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-----TTTTT------TT-AAGTGAG-ACT----------AGTA-GACCG
gi|15 : TT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTTAA-CCATACTAGAA--GAA---AT-A-T-C-A-TAGCTAC-TT-TTTTTT------TTCATGTCGG-ACA----------ATTA-GACCGGCTATGACTGAACTTTTGTCGGAt
gi|16 : CCCTTCAGA-A-CAT-AACCC-AAA--------------AGTGGTATGATCAGTGATTGATAATA---------A-----------ATG-AC-ATACGA-TCCGCTCCCA-GTTCCC---GCGG--CTAG-A-T-CAATGTCAG-AA--GGC-A---ATGT-G-CTAAG
gi|17 : -TTTTTT------AT-ATGTCAG-ACA----------AGTA-AACCAGCTATGACTGAACTTTTGTCAAACA-TTTTAAATTTTTGCCG
gi|18 : tacT-ATGTCAG-ACA----------TGAA-GACCGACTAAGACTTAACTTTTGTTTCATA-TATTCAATTTTTACgtaaatccgaaaagttttgcaaccactgt
gi|2 : TATCATATATTATATA-TA-----TCAT-TTATCTGACTCAATTACCACTTTTTCTAGACTTTTTGCGGCAGGT-AATCTGTAT-ATTCAA--T-AGAAATACA-T-------AA--------ATGT---ATAAACA-TGTTGGAAAATGTTTTTT---AA-ATATTTGAAAA-TACATAATACTG--AA-AATC----AG-AT---GGATTTT-TATTGTGAGTCAGGGAT-AAT-----TGGTAA-AAGGAATATACCTaggcaaatctgataaaacagacaagtttcgcaaacact
gi|2 : tcattgtgatttctcccaGCTACCC-ATTCC----ACTG--TTAG-A-TGTAACATCGGGAA--GGC-A---ATGT-GGTTAAGCGGTGACT-TATGTTTTTTTAAAATTTATAC-AAATTGTG-------------------AGTCCCAACATC-A--TTTGGCTGAGGTGAAAGGAAT-CATTGA-CAA-A---AT-TAAT-T---GGATGAC-A--AAAT---------------T---A-TAAATG-TTC-----ATAAATTA--GACATA--TAGGGTAAA--G---------GTAACA--TTATAA-TA--A-TG-GT-Tcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|2 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccgAATAT--AG-ATC-GTA---------A--TCC---AATAGTCTT-T---GT-AAAGGGG-AA-AC------TCG-GGATT--TAA-GCACTGGT----------------G---------ACGA---------CCAT-CACA-CGTGGGC-GC--A-TGCT-TGGAAGGGATATATCTTAGGAATCT-ACACTTACATGGAATTATCTATGCAAAATC-TGGCATCAAAAACTAGATT--TACGTTGGAGATTTTGAAGTGTTAC-------A---CTTCTATAAAAT-A-GTTAT---A-TGTTATTAGGA--GAGCATAT-A-T-T-A----CTCC-TT-TTTTTT------ttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|20 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattga-TT-TTTTTT------TT--TGTTGG-ACA----------AGGA-AACCGGCTATGACCAAACTTTTGTCAGACA-TCTTCAATTTTTGCatggtgaggac
gi|24 : TAGAA--GAA---AT-G-T-T-A-GAGCTAC--T-TTTTTT------TA-ATGTGAG-ACA----------AGT
gi|25 : TAG-A-T-CAACGTCAG-AA--GGCTATATATGT-G-CTAAGCGGC--CT-T
gi|26 : -A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GATAT-A-GAGCTA
gi|3 : TATC-CATGT-ATATC-TG----CTCTT-TCGT-----TCATTTACC-CTTTTTCTAGACTTT-------GGGT-GATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTC---AACATA----AAAA-TGT----TATTGTCAT-AATC----AA-AT---A----TT-TAT-G--AGCCAT---T-A-TGT-TTTGGTAA-AACA---ATACCCAAGTAA-A---TTAGTAAA-GAT-AAATGATT--CGT-GGGAATTTTAG-ATATCCCACCAAA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---GCGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--ATG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-TC-AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-AAA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TTT-C-AATATTTTC-T---GT-A--GAGG-AA-AC------TCG-GGATG-ATAACCCAT--GT----------------G---------AT-----------TCTT-CACA-C----TC-GC-TA-TATT-TAG---------GTC-TATG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-C-GTATCGAAAATT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-A-T-A-GAGCTAC-TTATTTTTT------TT-TTGTCGG-ACA----------AGTA-GACCGGCTATTACTGATCTTTTGTCAGACA-TTTTCAATTTTAGCCG
gi|4 : ATCTTATGT-ATATCCTGTATTCTCTTATCGT-----TCAAATGCC-CCTTTTCTAGTCTGT-------GAGTAAATCTGTATGGCCAGA--T-AGA---ACA-TTACAATGAATCAAGAACATGT---ATTT-TATTATT--------TTTTTTTTCAACATA----AAAACTTT----TATTGTCATAAATCCATAAA-AT---A----TTATATTG--AGCCAT---TAAATGT-TTTAGTAACAAGA---ATAACT-CGTAA-AGATTTATTAAATGAG-AAATGATTTAC-TGGGGAATATTAG-ATATACAATGAAA-AGCATCAACCC-AAA--------------AGTA---------------------A---------A-----------ATGCAG-GTAGGA-TCCGCTCCCCGGTTCCCCTGACGATCTTAG-A-T-CAACGTCGG-GAATAGC-A---ATG-------AGCG-----TATGT-----TCTAA------CAC-CAA--GTGCCATTTCACATTGAAGATTA--TACAAC-TC-A--ATTGG----------AG------AT--A-GAG-CTGGATAGGATCT-A-GAATA------------------------AC---A-TAA--G-TTT-----ATTAATTA-TG----AGGTAGGG---A--GTGCA--CTTGTAATAATTC-CAATTAACA-TG-ATATAATA--GAG-ATC-GTA---------AATCCC-C-AATATTTAT-TCTGGTAA--GAGGAAA-AC------TGGAGGATG-ACAACCCAT--GTTATTCTTAAAACTTCCA---------AC-----------TCTT-CACA-C----GCTGC-AAGTATTATAG---------Attgtgacccgctgctgaaaattgaaaatctagccagccatgtacgttattgaaa
gi|5 : agtgtttccattgcgaaacacacttaaaaattatctgccagtcatttggcctgcagatatctcacgttgtggtaggtcattttcaaatgtggcgtcataatcaagcaaactcgtttctacaaccattgttactaatgtgttatac--T-AGAA-TACA-T-------AA--------CTGTCACAATT-CA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATCA---AA-AT---A----TT-TA-TG--AGCCAT---T-AATATGTTTGGTAA-AACA---ATACCTAAGTAA-A---TTAGT-AATGATAAAATGATT--C-T--GGAATTTTAG-ATATCCCATCAAACC-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC----CGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAG--ATG-------------------A--TCCAA-ATC-A--TTTGG----------AGGA-T-CAT--A-CAA-A-GGATA-GATGTCA-GAATAACAT--AAGT-----A-AC-----AT---A-TAAATG-TTT-----AATCATTA-T-----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TGAAT-TAATAT-GAGTATC-ATA---------A--TCC-C-AATATTTTT------T-A--GAGG-AA-AC------TCG-GGACG-ACAACCCAT--GT----------------GAATTTTTTAACTTCGA------CCTTACACA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--C-------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATT--AACGT----GAC---------TTGC-------AATGATGAT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GAT-TAA-GAGCTAC----TTTTTT------TT-ATGTCGG-ACA----------AGTAGGACC-GCTATGACTGAACTTTTGTCGGACATTTTTCAATTTTAGCCGatc
gi|6 : tgtaaatttacctgctgactttaatcttattgaaaaccctgGA--T-AGAGATACA-ATACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTT-----AACATA----AACA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TAT------------------GT-TTTGGTAA-AACA---ATACCTAAGTAATA---TTTGTTAATGAT-AAATGATT--C-T-GGGAATTTTAGGATATCCATCAAAA-A-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGAATCCGCTCTCC-GTTCCC---AGGA--TTAG-A-T-CATCGTCGG-AA--GGC-A---ATGTTG-CTAAGCG-C--CT-TGT-----TTTA-----------------------------------------TCAAACATCTA--TTTAG-----------GGA-TGCAT--A-CAATATGGATATGATGTCAAGAATAAA-C--AAGT-ACGAA-ACCTAAAACTCTA-TAAATGCTTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATAG-TT-CAA-TA--A-TG-AT-TGATAT-GAG-A-C-GTACTGTGGCGCA--TCC------ATTTTT-T---GT-A--GATG-AA-AC------TCG-GGATG-ACAAACCAT--GT----------------G---------ATTTTAACTTCGACCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CC------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATTTATACGT----GAA---------TTGCAATGATGA---ATCCT----AGT-ATATTATgtaaatcgacagaaccgacaagtttcgcaaacactg
gi|7 : agtgtttgcgaaacttaaaaatttctgccaggcattttggcctgcaagttctccattttgtaggtcattttcaaaatgtgttagtcatcaacaagcaattgtttctacaccattttctatgtgtaagtgttatacatttatA-TCCGCTCCCT-GTT-----------------A----AACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAT------TA-----------------------------A--TCAAATGTC-A--GTTGG----------AAGA-T-CAT--A-CAA-ATGAATATGATGTCA-GATTAAC-TT-AAGT-A---A-AC-----AT---A-TAAATC-CTT-----GATAATTA-TG----A--TACGA---A--GTG----CCTGC-ATA--TT-CAG-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--CCC-C-AATA-TTTC-T---GT-A--GAGG-AG-ACTCGGGATCG-GGATG-ACAA--CAC--ATTATTTC----------G---------A------------CCTT-CACT-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AG---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAa
gi|8 : tatgcatcctcgtcagttcaaggtgatgagctctttgaatcgctaataaaatgttaaAGA-A-CAT-AACCC-AAA--------------AGT----------------------GGGTATGATCA-----------ATG-GT-GTACGA-TCCGCTCCCC-GTTCCC---ACT---TTAG-AATGCAACATCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TT-AA------TAC-AG---GTG-------------------A--TCCAACATT-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC------------------------------AAATG-TTT-----AATAATTA-TG----A--TAGGA---A--GTG----CCTG--ATA--TT-CAA-TA--A-TA-AT-TAATAT-GAG-ATC-GTA---------A--T-C-C-AATA-TTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAA--CAC--TT----------------G---------AC-----------CA-T-CACA-C----GC-GT-TA-TATT-T
gi|9 : A--A-TA-AT-TA---T-GAG-ATC-GTA---------A--TCC-C-AATATATTT-----GT-A--GAGG-AA-AC------TCG-GGATG-ACAAC--AC--TTC---------------G---------AC-----------CAT--CGCA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TA---AT-------C-T-GCATCAAAAACT-AATT--TACGT----GAT---------TTGC-------A---ATCCT----AGG-A-ATTATTCAA-CCTTACTAGAA--AAA---AT-G-T-A-A-GAGCTAC-TT-TTTTTTAATGTATA-ATGTGAG-ACAACTCACAAGTAGTA-GACCGTTTATga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTTTGCGAAACTTAAAAATTTCTGCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTTGTAGGTCATTTTCAAAATGTGTCAGTCATCAACAAGCAATCGTTTCTACACCATTTCTATGTGTTGTA
Unaligned ( gi|14 ): TGTTTGCGAAACTTAAAAATTTCTGCCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTCATAGGTCATTTTCAAAATGTGACAGTCATCAACAAGCAATCGTTTCTACGCCATTTTCTGT
Unaligned ( gi|19 ): GTGTTTGACGAAACTTTAAAAATTCCTGCCAGTCATTTTGGCTGCAAGTTCTCCACTTTTGATTGGTCATATT
Unaligned ( gi|21 ): CATTTTCAATTTTAGCCGGTAAATCCCACAGAACCGACAAGTTTCACAAACACTGTATA
Unaligned ( gi|22 ): AGAATTTGTCAGTCATCAACAAAGCATCGTTTCTACGCCAATTTCTAAGTG
Unaligned ( gi|23 ): TTTAGCCAGTAAATCCGACAGAACCGACAAATTTCGCAAACACTGAAAGA
Unaligned ( gi|27 ): AGTGTTTGCGAAACTTAAAAAATTCTGCC
Alignments
lowQualScore : 1 222222222 1 22222 11 3333333 1 1 111111111 22222222 111 1111 22222222 111 1111 1111 2222 11111111 222222222222222222222 111 22222 11 11 9999999999999999999999999999999999999999999999999999999999999 1 2222222222 1111 11111 55555555555555555555555555555555555555555 2222222222 555555555555555555555555555 11111 1111 11 111111111 11111 111111 11 888888888888888888888888888888888888888 111111111 111111 1111 111111111 1111111 1 111111 1111111111
lowQualScore : 9 0 777777777 0 55555 1 22 2222222 0 0 99 6 44 777777777 44444444 111 3333 44444444 111 2 4444 6 4444 3 6 0000 6 99999999 6 777777777777777777777 6 1 111 0 22222 6 66 8 0 0 11 8 11 8 22 555 5 5 8888888888888888888888888888888888888888888888888888888888888 5 5 0 44 1111111111 4 4 8 4 99 4 777 44 4 0000 4 22222 22222222222222222222222222222222222222222 66 5 66 1111111111 5 5 66 5 5 3 0 2 5 444444444444444444444444444 4 4 11111 4 9999 66 777 66 5555 8 00 4 4 55 4 4 4 4 4 4 666666666 55 888 3 11111 4 55 4 4 111111 4 4 77 55 222222222222222222222222222222222222222 1 4 888888 4 3 3 3 666666666 4 66 4 777 1 666666 6666 4 4 5 66 9999 777777777 4444444 777 2 9999 4 4 4 55 777 4 2 4 4 4 99 3 111111 4 0 4 7777777777 5 2 8 1
lowQualScore : . . ......... . ..... . .. ....... . . .. . .. ......... ........ ... .... ........ ... . .... . .... . . .... . ........ . ..................... . . ... . ..... . .. . . . .. . .. . .. ... . . ............................................................. . . . .. .......... . . . . .. . ... .. . .... . ..... ......................................... .. . .. .......... . . .. . . . . . . ........................... . . ..... . .... .. ... .. .... . .. . . .. . . . . . . ......... .. ... . ..... . .. . . ...... . . .. .. ....................................... . . ...... . . . . ......... . .. . ... . ...... .... . . . .. .... ......... ....... ... . .... . . . .. ... . . . . . .. . ...... . . . .......... . . . .
lowQualScore : 8 0 555555555 0 00000 0 55 5555555 0 0 22 7 88 333333333 22222222 777 5555 22222222 777 5 2222 7 2222 2 7 8888 7 33333333 7 777777777777777777777 7 0 777 8 88888 0 44 0 8 8 00 0 22 0 00 999 7 7 3333333333333333333333333333333333333333333333333333333333333 7 7 0 66 6666666666 0 0 0 0 55 0 000 88 0 1111 4 55555 99999999999999999999999999999999999999999 55 0 99 9999999999 0 0 99 0 0 2 1 5 0 222222222222222222222222222 4 4 11111 4 4444 11 888 11 6666 9 66 4 4 55 0 0 0 0 0 0 000000000 55 000 2 88888 0 55 0 0 555555 0 0 55 55 000000000000000000000000000000000000000 0 4 999999 0 6 6 6 000000000 4 11 4 888 8 222222 9999 4 4 0 11 4444 888888888 4444444 888 9 4444 0 0 4 55 000 0 0 0 0 0 77 6 555555 0 7 0 5555555555 0 2 0 4
consensus : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-N--AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
Reference ( family-2936 ) : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-N--AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
gi|1 : TATCATATGT-ATAG--TG----CTCTT-TTGT-----TCATTTACC--TTTTCCTACACTTT-------GAGT-AATCTGTAT-GTTAGAACTGAAAAATACAATCACAG-AAA--------ATGT---ATGT-GGGTTTT--------TTTTTT---AAAATA----AAAA-ATC----AAAT---AT-AATC----AGGATGGAA----TT-TAT-G--AGCAGGA--T-AATG------GTAA-AAGA---ATAC-TAAGTAA-----TGAATAA--GAT-TA-TG--T--C-T-AGGTAATTTAT-GTATCCGCTCAGA-A-CA--ATCCCAAAAGTGGATATGCATTCAGT----------------------G---------ATTGATAATAATATG-AATGTACGAATCCGCTCCC--GTTCC----ACG---TTAGTA-T-CAACGTCAG-AAA-GGC-A----TG--G-C-AAGCG----CT-TGT-----TTTAA------TACCAAA--GTG-------------------A--TCCAA--TC-AATTCTGA----------GGGA-T-CAT--AGCAA-ATGGATATGATG-CA-GAATAAC-AT-AAGT-A---AGAC-----AT---A-TAAATG-CT------GATAATTAATG----A--TAGGC---A--GTG----CG-GT-ATA--TT-CAA-TA--A-TA-AT-TAATTC-GAG-ATCTGTA---------A--TCC-CCAATATTTTTGT---GT-A--GAGG-AATAC------TCG-GGATG-ACAAC--AC--TTC---------------G---------AC-----------CACT-CACATC----GC-GCCTA-TATT-TAG---------ATC-TAGG--CCTTAC---TAC-TGGA--CATCTATGA--AATAAT-GC-TCAAAAACT-AATT--TACG------AT---------TTGC-------A---ATCCT----AGA-G-ATTATTCAACCCTTAC-AGAG--AAG---AT-GTT-T-ATGAGCTACTTT-TTTTTT------TT-ATGGTGATACA----------AG
gi|10 : tgttttcaaaaccttaagtttctgccagtgcatttagccgcaagttcccactttgtaggtcatttcaaaattttttaagtccaatcatcaacaaagtatatcgtttcacggtatgcgcattttattggtgttatttataAATAAC-ATAAAGTTA---A-AT-----AC---GGTACATT-TTTTTTTTAATAATTG-TG----A--TTGGG---ACAGTGGCCCCCTGT-ATA--TT-CAA-TA--AGTG-AT-TACTATAGAG-ATC-GTA---------A--TCCTC-GATATTTTT-T---AT-A--GAGG-AA-AC------TCG-AGATGAACAACAAAC--GT----------------G---------A
gi|11 : ACA-T----GG-GT-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TGCATG------------C--TTTC-T-GCATCAAGAATT-AATT--TATAT----GAT---------GTGC-------A---AAGCT-----GTAA-ATTATTTAA-TTTT-TTAGAAAGAAA---ATGG-T-T-A-GTGCCAC-TT-attaaattttgtaacactg
gi|12 : gacaagttaaccaagC-TA-AATT-TAG---------ATT-TAGG--TCT-AC---TACAT--CA-TATCTATGCAAAATC-T-GCATCAAAAACT-AATT--TATGT----GAT---------TTGG-------A---AT------------------------CTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-----TTTTT------TT-AAGTGAG-ACT----------AGTA-GACCG
gi|15 : TT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTTAA-CCATACTAGAA--GAA---AT-A-T-C-A-TAGCTAC-TT-TTTTTT------TTCATGTCGG-ACA----------ATTA-GACCGGCTATGACTGAACTTTTGTCGGAt
gi|16 : CCCTTCAGA-A-CAT-AACCC-AAA--------------AGTGGTATGATCAGTGATTGATAATA---------A-----------ATG-AC-ATACGA-TCCGCTCCCA-GTTCCC---GCGG--CTAG-A-T-CAATGTCAG-AA--GGC-A---ATGT-G-CTAAG
gi|17 : -TTTTTT------AT-ATGTCAG-ACA----------AGTA-AACCAGCTATGACTGAACTTTTGTCAAACA-TTTTAAATTTTTGCCG
gi|18 : tacT-ATGTCAG-ACA----------TGAA-GACCGACTAAGACTTAACTTTTGTTTCATA-TATTCAATTTTTACgtaaatccgaaaagttttgcaaccactgt
gi|2 : TATCATATATTATATA-TA-----TCAT-TTATCTGACTCAATTACCACTTTTTCTAGACTTTTTGCGGCAGGT-AATCTGTAT-ATTCAA--T-AGAAATACA-T-------AA--------ATGT---ATAAACA-TGTTGGAAAATGTTTTTT---AA-ATATTTGAAAA-TACATAATACTG--AA-AATC----AG-AT---GGATTTT-TATTGTGAGTCAGGGAT-AAT-----TGGTAA-AAGGAATATACCTaggcaaatctgataaaacagacaagtttcgcaaacact
gi|2 : tcattgtgatttctcccaGCTACCC-ATTCC----ACTG--TTAG-A-TGTAACATCGGGAA--GGC-A---ATGT-GGTTAAGCGGTGACT-TATGTTTTTTTAAAATTTATAC-AAATTGTG-------------------AGTCCCAACATC-A--TTTGGCTGAGGTGAAAGGAAT-CATTGA-CAA-A---AT-TAAT-T---GGATGAC-A--AAAT---------------T---A-TAAATG-TTC-----ATAAATTA--GACATA--TAGGGTAAA--G---------GTAACA--TTATAA-TA--A-TG-GT-Tcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|2 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccgAATAT--AG-ATC-GTA---------A--TCC---AATAGTCTT-T---GT-AAAGGGG-AA-AC------TCG-GGATT--TAA-GCACTGGT----------------G---------ACGA---------CCAT-CACA-CGTGGGC-GC--A-TGCT-TGGAAGGGATATATCTTAGGAATCT-ACACTTACATGGAATTATCTATGCAAAATC-TGGCATCAAAAACTAGATT--TACGTTGGAGATTTTGAAGTGTTAC-------A---CTTCTATAAAAT-A-GTTAT---A-TGTTATTAGGA--GAGCATAT-A-T-T-A----CTCC-TT-TTTTTT------ttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|20 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattga-TT-TTTTTT------TT--TGTTGG-ACA----------AGGA-AACCGGCTATGACCAAACTTTTGTCAGACA-TCTTCAATTTTTGCatggtgaggac
gi|24 : TAGAA--GAA---AT-G-T-T-A-GAGCTAC--T-TTTTTT------TA-ATGTGAG-ACA----------AGT
gi|25 : TAG-A-T-CAACGTCAG-AA--GGCTATATATGT-G-CTAAGCGGC--CT-T
gi|26 : -A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GATAT-A-GAGCTA
gi|3 : TATC-CATGT-ATATC-TG----CTCTT-TCGT-----TCATTTACC-CTTTTTCTAGACTTT-------GGGT-GATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTC---AACATA----AAAA-TGT----TATTGTCAT-AATC----AA-AT---A----TT-TAT-G--AGCCAT---T-A-TGT-TTTGGTAA-AACA---ATACCCAAGTAA-A---TTAGTAAA-GAT-AAATGATT--CGT-GGGAATTTTAG-ATATCCCACCAAA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---GCGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--ATG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-TC-AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-AAA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TTT-C-AATATTTTC-T---GT-A--GAGG-AA-AC------TCG-GGATG-ATAACCCAT--GT----------------G---------AT-----------TCTT-CACA-C----TC-GC-TA-TATT-TAG---------GTC-TATG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-C-GTATCGAAAATT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-A-T-A-GAGCTAC-TTATTTTTT------TT-TTGTCGG-ACA----------AGTA-GACCGGCTATTACTGATCTTTTGTCAGACA-TTTTCAATTTTAGCCG
gi|4 : ATCTTATGT-ATATCCTGTATTCTCTTATCGT-----TCAAATGCC-CCTTTTCTAGTCTGT-------GAGTAAATCTGTATGGCCAGA--T-AGA---ACA-TTACAATGAATCAAGAACATGT---ATTT-TATTATT--------TTTTTTTTCAACATA----AAAACTTT----TATTGTCATAAATCCATAAA-AT---A----TTATATTG--AGCCAT---TAAATGT-TTTAGTAACAAGA---ATAACT-CGTAA-AGATTTATTAAATGAG-AAATGATTTAC-TGGGGAATATTAG-ATATACAATGAAA-AGCATCAACCC-AAA--------------AGTA---------------------A---------A-----------ATGCAG-GTAGGA-TCCGCTCCCCGGTTCCCCTGACGATCTTAG-A-T-CAACGTCGG-GAATAGC-A---ATG-------AGCG-----TATGT-----TCTAA------CAC-CAA--GTGCCATTTCACATTGAAGATTA--TACAAC-TC-A--ATTGG----------AG------AT--A-GAG-CTGGATAGGATCT-A-GAATA------------------------AC---A-TAA--G-TTT-----ATTAATTA-TG----AGGTAGGG---A--GTGCA--CTTGTAATAATTC-CAATTAACA-TG-ATATAATA--GAG-ATC-GTA---------AATCCC-C-AATATTTAT-TCTGGTAA--GAGGAAA-AC------TGGAGGATG-ACAACCCAT--GTTATTCTTAAAACTTCCA---------AC-----------TCTT-CACA-C----GCTGC-AAGTATTATAG---------Attgtgacccgctgctgaaaattgaaaatctagccagccatgtacgttattgaaa
gi|5 : agtgtttccattgcgaaacacacttaaaaattatctgccagtcatttggcctgcagatatctcacgttgtggtaggtcattttcaaatgtggcgtcataatcaagcaaactcgtttctacaaccattgttactaatgtgttatac--T-AGAA-TACA-T-------AA--------CTGTCACAATT-CA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATCA---AA-AT---A----TT-TA-TG--AGCCAT---T-AATATGTTTGGTAA-AACA---ATACCTAAGTAA-A---TTAGT-AATGATAAAATGATT--C-T--GGAATTTTAG-ATATCCCATCAAACC-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC----CGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAG--ATG-------------------A--TCCAA-ATC-A--TTTGG----------AGGA-T-CAT--A-CAA-A-GGATA-GATGTCA-GAATAACAT--AAGT-----A-AC-----AT---A-TAAATG-TTT-----AATCATTA-T-----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TGAAT-TAATAT-GAGTATC-ATA---------A--TCC-C-AATATTTTT------T-A--GAGG-AA-AC------TCG-GGACG-ACAACCCAT--GT----------------GAATTTTTTAACTTCGA------CCTTACACA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--C-------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATT--AACGT----GAC---------TTGC-------AATGATGAT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GAT-TAA-GAGCTAC----TTTTTT------TT-ATGTCGG-ACA----------AGTAGGACC-GCTATGACTGAACTTTTGTCGGACATTTTTCAATTTTAGCCGatc
gi|6 : tgtaaatttacctgctgactttaatcttattgaaaaccctgGA--T-AGAGATACA-ATACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTT-----AACATA----AACA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TAT------------------GT-TTTGGTAA-AACA---ATACCTAAGTAATA---TTTGTTAATGAT-AAATGATT--C-T-GGGAATTTTAGGATATCCATCAAAA-A-CAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGAATCCGCTCTCC-GTTCCC---AGGA--TTAG-A-T-CATCGTCGG-AA--GGC-A---ATGTTG-CTAAGCG-C--CT-TGT-----TTTA-----------------------------------------TCAAACATCTA--TTTAG-----------GGA-TGCAT--A-CAATATGGATATGATGTCAAGAATAAA-C--AAGT-ACGAA-ACCTAAAACTCTA-TAAATGCTTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATAG-TT-CAA-TA--A-TG-AT-TGATAT-GAG-A-C-GTACTGTGGCGCA--TCC------ATTTTT-T---GT-A--GATG-AA-AC------TCG-GGATG-ACAAACCAT--GT----------------G---------ATTTTAACTTCGACCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CC------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATTTATACGT----GAA---------TTGCAATGATGA---ATCCT----AGT-ATATTATgtaaatcgacagaaccgacaagtttcgcaaacactg
gi|7 : agtgtttgcgaaacttaaaaatttctgccaggcattttggcctgcaagttctccattttgtaggtcattttcaaaatgtgttagtcatcaacaagcaattgtttctacaccattttctatgtgtaagtgttatacatttatA-TCCGCTCCCT-GTT-----------------A----AACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAT------TA-----------------------------A--TCAAATGTC-A--GTTGG----------AAGA-T-CAT--A-CAA-ATGAATATGATGTCA-GATTAAC-TT-AAGT-A---A-AC-----AT---A-TAAATC-CTT-----GATAATTA-TG----A--TACGA---A--GTG----CCTGC-ATA--TT-CAG-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--CCC-C-AATA-TTTC-T---GT-A--GAGG-AG-ACTCGGGATCG-GGATG-ACAA--CAC--ATTATTTC----------G---------A------------CCTT-CACT-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AG---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAa
gi|8 : tatgcatcctcgtcagttcaaggtgatgagctctttgaatcgctaataaaatgttaaAGA-A-CAT-AACCC-AAA--------------AGT----------------------GGGTATGATCA-----------ATG-GT-GTACGA-TCCGCTCCCC-GTTCCC---ACT---TTAG-AATGCAACATCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TT-AA------TAC-AG---GTG-------------------A--TCCAACATT-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC------------------------------AAATG-TTT-----AATAATTA-TG----A--TAGGA---A--GTG----CCTG--ATA--TT-CAA-TA--A-TA-AT-TAATAT-GAG-ATC-GTA---------A--T-C-C-AATA-TTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAA--CAC--TT----------------G---------AC-----------CA-T-CACA-C----GC-GT-TA-TATT-T
gi|9 : A--A-TA-AT-TA---T-GAG-ATC-GTA---------A--TCC-C-AATATATTT-----GT-A--GAGG-AA-AC------TCG-GGATG-ACAAC--AC--TTC---------------G---------AC-----------CAT--CGCA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TA---AT-------C-T-GCATCAAAAACT-AATT--TACGT----GAT---------TTGC-------A---ATCCT----AGG-A-ATTATTCAA-CCTTACTAGAA--AAA---AT-G-T-A-A-GAGCTAC-TT-TTTTTTAATGTATA-ATGTGAG-ACAACTCACAAGTAGTA-GACCGTTTATga
blockSeqs : A T CCTGTATTC A CTGAC A AC TTGCGGC A G . . AA TTACAATG TCAAGAAC CAC ACA GGAAAATG TTC C TTTG C ATAA T A CATA . GGATT A TGTGAGTCAGGGATAAT C G AAT AGAT A AT A TA G GG G CT AG C . AGTGGTATGATCAGTGATTGATAATAA C . A CG CCTGACGATC . A G G AT T TAT TT G GTGA A GTTTT ACACCAAGTGCCATTTCACATTGAAGATTA CA T . CTGAGGTGAA A G TG . T T C A CAAGTACGAAACCTAAAACTCT G C TTTTT . ACAT GG TAA CA GCCC A AT A T AC G A A A T . CTGTGGCGC AT TC T TCTG A AA A . TCGGGA A A CA TG TATTCTTAAAACTTCCAAC A A CGTGG T . G A AAGGGATAT T AA . ACT A GGAATT AAAA . G A TA TGGA TTTGAAGTG AATGATG ATG G ATAA A T . AG CAT G A A A . T A AATGTA C . ACTCACAAGT G A T T
blockSeqs : T . CTGC . . T C . . . . . AA TTACAAG . . TAT . . C . . . T . A . A . TGAGCCATTAAATGT . C . TA A AT . . . G . CA CC . . AGTGGGTATGATCA . . . A CGCGG . . G . . . . T . GC . . AAATTTATACAAATTGTGAGT CA . . . . . . . . T C . ATAAAGTTAAATAC . . . . . . . . CA A G . . . . . . . . . . . C G T . . . . . . . CC . GAATTTTTTAACTTCGA T . T . . . . . . . . . A GGAAT AAAA . . . . . . . . C . . . . . . . A . . . T . . . . . . T . T
blockSeqs : . . ATA . . A C . . . . . GA ATACAAG . . TA . . C . . . T . . . A . TGAGCCATTAATATG . G . A T AT . . . G . AA A . . AGTAAA . . . C CGCGG . . . . . . . T . GC . . ATACAAAATGA CA . . . . . . . . T C . TCAAGTAAACAC . . . . . . . . . . . . . . . . . . . . . . C T T . . . . . . . CC . GATTTTAACTTCGA T . C . . . . . . . . . A GGAAT TT . . . . . . . . T . . . . . . . . . . . T . . . . . . A . A
blockSeqs : . . A T . . CA . . C . . . T . . . A . GAGCCATTATGT . C . A . A . . . . . CA A . . AGTAA . . . C CAGGA . . . . . . . T . GC . . ATACAAGATGA TG . . . . . . . . T C . TTAAGTAAACAT . . . . . . . . . . . . . . . . . . . . . . C T T . . . . . . . CC . TATTTCGA T . C . . . . . . . . . A GGAAT TT . . . . . . . . C . . . . . . . . . . . T . . . . . . A . A
blockSeqs : . . . T . . TA . . . . . . . . . . A . GT . C . AT A . . AGTAA . . . C ACTG . . . . . . . T . GC . . ATACAGGTGA CA . . . . . . . . T C . ATAAGTAACAT . . . . . . . . . . . . . . . . . . . . . . C T T . . . . . . . AC . GACGA T . T . . . . . . . . . A CAT TT . . . . . . . . G . . . . . . . . . . . T . . . . . . G
blockSeqs : A . . AGTAA . . . C CCGG . . . . . . . T . GC . . TTAA C . . . . . . . . . . . AAAATT . . . . . . . . . . . . . . . . . . . . . . C T T . . . . . . . G . CGAC T . C . . . . . . . . . A G TT . . . . . . . . C . . . . . . . . . . . T . . . . . .
blockSeqs : . T CACT . . . . . . . T . C . . . A . . . . . . . . . . . AC . . . . . . . . . . . . . . . . . . . . . . C T T . . . . . . . C . GAT T . T . . . . . . . . . . . TT . . . . . . . . C . . . . . . . . . . . . . . . . . .
blockSeqs : C . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GAC . . C . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . .
blockSeqCons : ** TTACAAG** TA** A******* TGAGCCATTAATGT******* A**** AT C* CACGG***** ** T* GC** ATACAAGATGA****************************** CA ** AAGTAAACAC***************** C** T**** CC GATTCGA******************************** C***** GGAAT* T*
originalCons : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AT---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-AAA--GTG-------------------A--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAAC-N--AAGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GT----------------G---------AC-----------CCTT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
finalCons : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACATTACAAG--AA--------ATGT---ATTTTA--TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-ATA-------TT-TATTGAGCCATTAATGT-------TTTGGTAA-AANA---ATACCTAAGTAAA----TTAGTAAATGAT-AAATGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGA-A-CAT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCCACGG-----TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAATACAAGATGA------------------------------TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAACAAGTAAACAC-----------------A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TG-AT-TAATAT-GAG-ATC-GTA---------A--TCCC--AATATTTTTT----GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GTGATTCGA--------------------------------CCTT-CACAC-----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAAT-ATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------A---ATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTACT-T-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTTTGCGAAACTTAAAAATTTCTGCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTTGTAGGTCATTTTCAAAATGTGTCAGTCATCAACAAGCAATCGTTTCTACACCATTTCTATGTGTTGTA
Unaligned ( gi|14 ): TGTTTGCGAAACTTAAAAATTTCTGCCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTCATAGGTCATTTTCAAAATGTGACAGTCATCAACAAGCAATCGTTTCTACGCCATTTTCTGT
Unaligned ( gi|19 ): GTGTTTGACGAAACTTTAAAAATTCCTGCCAGTCATTTTGGCTGCAAGTTCTCCACTTTTGATTGGTCATATT
Unaligned ( gi|21 ): CATTTTCAATTTTAGCCGGTAAATCCCACAGAACCGACAAGTTTCACAAACACTGTATA
Unaligned ( gi|22 ): AGAATTTGTCAGTCATCAACAAAGCATCGTTTCTACGCCAATTTCTAAGTG
Unaligned ( gi|23 ): TTTAGCCAGTAAATCCGACAGAACCGACAAATTTCGCAAACACTGAAAGA
Unaligned ( gi|27 ): AGTGTTTGCGAAACTTAAAAAATTCTGCC
Alignments
lowQualScore : 1 222222222 1 22222 11 3333333 1 1 111111111 22222222 111 1111 22222222 111 1111 1111 1111 11111111 333333333333333333333 111 22222 11 11 9999999999999999999999999999999999999999999999999999999999999 1 2222222222 1111 11111 55555555555555555555555555555555555 2222222222 11 555555555555555555555555555 11111 1111 11 111111111 111111 44444444444444444444444444444444444 11111111 111111111 111111 1111 111111111 1111111 1111 1 111111 1111111111
lowQualScore : 9 0 777777777 0 55555 1 22 2222222 0 0 99 6 44 777777777 44444444 111 3333 44444444 111 2 4444 6 4444 3 6 4444 6 6 99999999 6 555555555555555555555 6 1 111 0 22222 66 88 0 11 8 8 8 22 5 5 5 5 8888888888888888888888888888888888888888888888888888888888888 5 5 0 44 1111111111 4 4 8 4 99 4 777 44 4 0000 4 22222 99999999999999999999999999999999999 66 66 5 66 1111111111 5 5 66 5 5 3 0 2 5 00 66 222222222222222222222222222 4 11111 4 9999 66 777 66 5555 8 00 4 4 55 4 4 4 4 4 4 666666666 55 888 3 4 777 4 55 4 4 111111 4 4 77777777777777777777777777777777777 66666666 55 4 888888 4 3 3 3 666666666 4 66 4 777 1 666666 6666 4 4 5 66 9999 777777777 4444444 2 7777 4 4 4 55 777 4 2 4 4 4 99 3 111111 4 0 4 7777777777 5 2 8 1
lowQualScore : . . ......... . ..... . .. ....... . . .. . .. ......... ........ ... .... ........ ... . .... . .... . . .... . . ........ . ..................... . . ... . ..... .. .. . .. . . . .. . . . . ............................................................. . . . .. .......... . . . . .. . ... .. . .... . ..... ................................... .. .. . .. .......... . . .. . . . . . . .. .. ........................... . ..... . .... .. ... .. .... . .. . . .. . . . . . . ......... .. ... . . ... . .. . . ...... . . ................................... ........ .. . ...... . . . . ......... . .. . ... . ...... .... . . . .. .... ......... ....... . .... . . . .. ... . . . . . .. . ...... . . . .......... . . . .
lowQualScore : 8 0 555555555 0 00000 0 55 5555555 0 0 22 7 88 333333333 22222222 777 5555 22222222 777 5 2222 7 2222 2 7 2222 7 7 33333333 7 888888888888888888888 7 0 777 8 88888 22 88 8 00 0 0 0 00 7 7 7 7 3333333333333333333333333333333333333333333333333333333333333 7 7 0 66 6666666666 0 0 0 0 55 0 000 88 0 1111 4 55555 66666666666666666666666666666666666 99 55 0 99 9999999999 0 0 99 0 0 2 1 5 0 66 11 888888888888888888888888888 4 11111 4 4444 11 888 11 6666 9 66 4 4 55 0 0 0 0 0 0 000000000 55 000 2 0 000 0 55 0 0 555555 0 0 99999999999999999999999999999999999 11111111 88 4 999999 0 6 6 6 000000000 4 11 4 888 8 222222 9999 4 4 0 11 4444 888888888 4444444 9 2222 0 0 4 55 000 0 0 0 0 0 77 6 555555 0 7 0 5555555555 0 2 0 4
consensus : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-A-T---A----TT-TAT-G--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGATAAA-TGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGAA-C-AT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-------------------AAG--ATGA--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAA--C--A---AGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TGA-T-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GTGA----------TT-------C----GAC--------C-TT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------AATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
Reference ( family-2936 ) : TATCATATGT-ATATC-TG----CTCTT-TCGT-----TCANTTACC-CTTTTTCTAGACTTT-------GGGT-AATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-A-T---A----TT-TATTG--AGCCAT---T-AATGT-TTTGGTAA-AANA---ATACCTAAGTAA-A---TTAGTAAATGATAAA-TGATT--C-T-GGGAATTTTAG-ATATCCNNTCAGAA-C-AT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---ACGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-------------------AAG--ATGA--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAA--C--A---AGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TGA-T-TAATAT-GAG-ATC-GTA---------A--TCC-C-AATATTTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAACCCAC--GTGA----------TT-------C----GAC--------C-TT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAAAACT-GATT--TACGT----GAT---------TTGC-------AATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-TT-TTTTTT------TT-ATGTCGG-ACA----------AGTA-GACCGGCTATGACTGAACTTTTGTCGGACA-TTTTCAATTTTTGCCG
gi|1 : TATCATATGT-ATAG--TG----CTCTT-TTGT-----TCATTTACC--TTTTCCTACACTTT-------GAGT-AATCTGTAT-GTTAGAACTGAAAAATACAATCACAG-AAA--------ATGT---ATGT-GGGTTTT--------TTTTTT---AAAATA----AAAA-ATC----AAAT---AT-AATC----AGGA-TGGAA----TT-TAT-G--AGCAGGA--T-AATG------GTAA-AAGA---ATAC-TAAGTAA-----TGAATAA--GATTA--TG--T--C-T-AGGTAATTTAT-GTATCCGCTCAGAA-C-A--ATCCCAAAAGTGGATATGCATTCAGT----------------------G---------ATTGATAATAATATG-AATGTACGAATCCGCTCCC--GTTCC----ACG---TTAGTA-T-CAACGTCAG-AAA-GGC-A----TG--G-C-AAGCG----CT-TGT-----TTTAA------TACC------------------AAA--GTGA--TCCAA--TC-AATTCTGA----------GGGA-T-CAT--AGCAA-ATGGATATGATG-CA-GAATAA--C--ATA-AGT-A---AGAC-----AT---A-TAAATG-CT------GATAATTAATG----A--TAGGC---A--GTG----CG-GT-ATA--TT-CAA-TA--A-TAA-T-TAATTC-GAG-ATCTGTA---------A--TCC-CCAATATTTTTGT---GT-A--GAGG-AATAC------TCG-GGATG-ACAAC--AC----------------TT-------C----GAC--------CACT-CACATC----GC-GCCTA-TATT-TAG---------ATC-TAGG--CCTTAC---TAC-TGGA--CATCTATGA--AATAAT-GC-TCAAAAACT-AATT--TACG------AT---------TTGC-------AATCCT----AGA-G-ATTATTCAACCCTTAC-AGAG--AAG---AT-GTT-T-ATGAGCTACTTT-TTTTTT------TT-ATGGTGATACA----------AG
gi|10 : tgttttcaaaaccttaagtttctgccagtgcatttagccgcaagttcccactttgtaggtcatttcaaaattttttaagtccaatcatcaacaaagtatatcgtttcacggtatgcgcattttattggtgttatttataAATAA--C--ATAAAGTTA---A-AT-----AC---GGTACATT-TTTTTTTTAATAATTG-TG----A--TTGGG---ACAGTGGCCCCCTGT-ATA--TT-CAA-TA--AGTGA-T-TACTATAGAG-ATC-GTA---------A--TCCTC-GATATTTTT-T---AT-A--GAGG-AA-AC------TCG-AGATGAACAACAAAC--GTGA----------
gi|11 : ACA-T----GG-GT-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TGCATG------------C--TTTC-T-GCATCAAGAATT-AATT--TATAT----GAT---------GTGC-------AAAGCT-----GTAA-ATTATTTAA-TTTT-TTAGAAAGAAA---ATGG-T-T-A-GTGCCAC-TT-attaaattttgtaacactg
gi|12 : gacaagttaaccaagC-TA-AATT-TAG---------ATT-TAGG--TCT-AC---TACAT--CA-TATCTATGCAAAATC-T-GCATCAAAAACT-AATT--TATGT----GAT---------TTGG-------AAT------------------------CTTACTAGAA--GAA---AT-G-T-T-A-GAGCTAC-----TTTTT------TT-AAGTGAG-ACT----------AGTA-GACCG
gi|15 : TT--TACGT----GAT---------TTGC-------AATCCT----AGT-A-ATTATTTAA-CCATACTAGAA--GAA---AT-A-T-C-A-TAGCTAC-TT-TTTTTT------TTCATGTCGG-ACA----------ATTA-GACCGGCTATGACTGAACTTTTGTCGGAt
gi|16 : CCCTTCAGAA-C-AT-AACCC-AAA--------------AGTGGTATGATCAGTGATTGATAATA---------A-----------ATG-AC-ATACGA-TCCGCTCCCA-GTTCCC---GCGG--CTAG-A-T-CAATGTCAG-AA--GGC-A---ATGT-G-CTAAG
gi|17 : -TTTTTT------AT-ATGTCAG-ACA----------AGTA-AACCAGCTATGACTGAACTTTTGTCAAACA-TTTTAAATTTTTGCCG
gi|18 : tacT-ATGTCAG-ACA----------TGAA-GACCGACTAAGACTTAACTTTTGTTTCATA-TATTCAATTTTTACgtaaatccgaaaagttttgcaaccactgt
gi|2 : TATCATATATTATATA-TA-----TCAT-TTATCTGACTCAATTACCACTTTTTCTAGACTTTTTGCGGCAGGT-AATCTGTAT-ATTCAA--T-AGAAATACA-T-------AA--------ATGT---ATAAACA-TGTTGGAAAATGTTTTTT---AA-ATATTTGAAAA-TACATAATACTG--AA-AATC----AG-A-T---GGATTTT-TATTGTGAGTCAGGGAT-AAT-----TGGTAA-AAGGAATATACCTaggcaaatctgataaaacagacaagtttcgcaaacact
gi|2 : tcattgtgatttctcccaGCTACCC-ATTCC----ACTG--TTAG-A-TGTAACATCGGGAA--GGC-A---ATGT-GGTTAAGCGGTGACT-TATGTTTTTTTAAAATTTATAC-------------------AAATTGTGAGTCCCAACATC-A--TTTGGCTGAGGTGAAAGGAAT-CATTGA-CAA-A---AT-TAAT-T---GGATGA--C--A---A-------A-AT------T---A-TAAATG-TTC-----ATAAATTA--GACATA--TAGGGTAAA--G---------GTAACA--TTATAA-TA--A-TGG-T-Tcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|2 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccgAATAT--AG-ATC-GTA---------A--TCC---AATAGTCTT-T---GT-AAAGGGG-AA-AC------TCG-GGATT--TAA-GCACTGGTGA-------------------C----GAC--------C-AT-CACA-CGTGGGC-GC--A-TGCT-TGGAAGGGATATATCTTAGGAATCT-ACACTTACATGGAATTATCTATGCAAAATC-TGGCATCAAAAACTAGATT--TACGTTGGAGATTTTGAAGTGTTAC-------ACTTCTATAAAAT-A-GTTAT---A-TGTTATTAGGA--GAGCATAT-A-T-T-A----CTCC-TT-TTTTTT------ttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattgaaatatagatcgtaatccaatagtctttgtaaaggggaaactcgggatttaagcactggtgacgaccatcacacgtgggcgcatgcttggaagggatatatcttaggaatctacacttacatggaattatctatgcaaaatctggcatcaaaaactagatttacgttggagattttgaagtgttacacttctataaaatagttatatgttattaggagagcatatattactccttttttttatggtgaggac
gi|20 : tcattgtgatttctcccatatcatatattatatatatcatttatctgactcaattaccactttttctagactttttgcggcaggtaatctgtatattcaatagaaatacataaatgtataaacatgttggaaaatgttttttaaatatttgaaaatacataatactgaaaatcagatggatttttattgtgagtcagggataattggtaaaaggaatatacctcaaaaatacttgacttggccttatttgtatactcagtggacttgaccgttaccggctacccattccactgttagatgtaacatcgggaaggcaatgtggttaagcggtgacttatgtttttttaaaatttatacaaattgtgagtcccaacatcatttggctgaggtgaaaggaatcattgacaaaattaattggatgacaaaattataaatgttcataaattagacatatagggtaaaggtaacattataataatggttttagaataatttggagttaataagggaatgagattggccactagacataatgaattcatataggtaaattga-TT-TTTTTT------TT--TGTTGG-ACA----------AGGA-AACCGGCTATGACCAAACTTTTGTCAGACA-TCTTCAATTTTTGCatggtgaggac
gi|24 : TAGAA--GAA---AT-G-T-T-A-GAGCTAC--T-TTTTTT------TA-ATGTGAG-ACA----------AGT
gi|25 : TAG-A-T-CAACGTCAG-AA--GGCTATATATGT-G-CTAAGCGGC--CT-T
gi|26 : -A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GATAT-A-GAGCTA
gi|3 : TATC-CATGT-ATATC-TG----CTCTT-TCGT-----TCATTTACC-CTTTTTCTAGACTTT-------GGGT-GATCTGTAT-GTCAGA--T-AGAAATACA-TTACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTTTC---AACATA----AAAA-TGT----TATTGTCAT-AATC----AA-A-T---A----TT-TAT-G--AGCCAT---T-A-TGT-TTTGGTAA-AACA---ATACCCAAGTAA-A---TTAGTAAA-GATAAA-TGATT--CGT-GGGAATTTTAG-ATATCCCACCAAAA-C-AT-AACCC-AAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC---GCGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-------------------AAA--ATGA--TCCAACATC-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAACTC--A---AGT-A---A-AC-----AC---A-TAAATG-TTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-AAA--TT-CAA-TA--A-TGA-T-TAATAT-GAG-ATC-GTA---------A--TTT-C-AATATTTTC-T---GT-A--GAGG-AA-AC------TCG-GGATG-ATAACCCAT--GTGA----------TT-----------------------C-TT-CACA-C----TC-GC-TA-TATT-TAG---------GTC-TATG--CCT-AC---TACATGGAA-TATCTATGC--TTTC-C-GTATCGAAAATT-GATT--TACGT----GAT---------TTGC-------AATCCT----AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-G-A-T-A-GAGCTAC-TTATTTTTT------TT-TTGTCGG-ACA----------AGTA-GACCGGCTATTACTGATCTTTTGTCAGACA-TTTTCAATTTTAGCCG
gi|4 : ATCTTATGT-ATATCCTGTATTCTCTTATCGT-----TCAAATGCC-CCTTTTCTAGTCTGT-------GAGTAAATCTGTATGGCCAGA--T-AGA---ACA-TTACAATGAATCAAGAACATGT---ATTT-TATTATT--------TTTTTTTTCAACATA----AAAACTTT----TATTGTCATAAATCCATAAA-A-T---A----TTATATTG--AGCCAT---TAAATGT-TTTAGTAACAAGA---ATAACT-CGTAA-AGATTTATTAAATGAGAAA-TGATTTAC-TGGGGAATATTAG-ATATACAATGAAAAGC-ATCAACCC-AAA--------------AGTA---------------------A---------A-----------ATGCAG-GTAGGA-TCCGCTCCCCGGTTCCCCTGACGATCTTAG-A-T-CAACGTCGG-GAATAGC-A---ATG-------AGCG-----TATGT-----TCTAA------CACCAAGTGCCATTTCACATTGAAG--ATTA--TACAAC-TC-A--ATTGG----------AG------AT--A-GAG-CTGGATAGGATCT-A-GAATAA--C--A-----T-A---A--------------------G-TTT-----ATTAATTA-TG----AGGTAGGG---A--GTGCA--CTTGTAATAATTC-CAATTAACA-TGA-TATAATA--GAG-ATC-GTA---------AATCCC-C-AATATTTAT-TCTGGTAA--GAGGAAA-AC------TGGAGGATG-ACAACCCAT--GTTA----------TT-------CTTAAAACTTCCAACTC-TT-CACA-C----GCTGC-AAGTATTATAG---------Attgtgacccgctgctgaaaattgaaaatctagccagccatgtacgttattgaaa
gi|5 : agtgtttccattgcgaaacacacttaaaaattatctgccagtcatttggcctgcagatatctcacgttgtggtaggtcattttcaaatgtggcgtcataatcaagcaaactcgtttctacaaccattgttactaatgtgttatac--T-AGAA-TACA-T-------AA--------CTGTCACAATT-CA-TGTT--------TTTTTT---AACATA----AAAA-TTT----TATTGTCAT-AATC----AA-AAT---A----TT-TAT-G--AGCCAT---T-AATATGTTTGGTAA-AACA---ATACCTAAGTAA-A---TTAGTAA-TGATAAAATGATT--C-T-GG-AATTTTAG-ATATCCCATCAAAC-CCAT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGA-TCCGCTCCCC-GTTCCC----CGG--TTAG-A-T-CAACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAA------TAC-------------------AAG--ATGA--TCCAA-ATC-A--TTTGG----------AGGA-T-CAT--A-CAA-A-GGATA-GATGTCA-GAATAA--C--ATA-AGT-A---A--C-----AT---A-TAAATG-TTT-----AATCATTA-T-----A--TAGGG---A--GTG----CCTGT-ATA--TT-CAA-TA--A-TGAAT-TAATAT-GAGTATC-ATA---------A--TCC-C-AATATTTTT-T------A--GAGG-AA-AC------TCG-GGACG-ACAACCCAT--GTGAATTTTTTAACTT-------C----GAC--------C-TTACACA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--C-------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATT--AACGT----GAC---------TTGC-------AATGATGAT-AGT-A-ATTATTCAA-CCTTACTAGAA--GAA---AT-GAT-TAA-GAGCTAC----TTTTTT------TT-ATGTCGG-ACA----------AGTAGGACC-GCTATGACTGAACTTTTGTCGGACATTTTTCAATTTTAGCCGatc
gi|6 : tgtaaatttacctgctgactttaatcttattgaaaaccctgGA--T-AGAGATACA-ATACAA-GAA--------ATGT---ATTT-TA-TGTT--------TTTT-----AACATA----AACA-TTT----TATTGTCAT-AATC----AA-A-T---A----TT-TAT------------------GT-TTTGGTAA-AACA---ATACCTAAGTAATA---TTTGTTAATGATAAA-TGATT--C-T-GGGAATTTTAGGATATCCATCAAAAA-C-AT-AACCC-CAA--------------AGT----------------------A---------A-----------ATG-AG-GTACGAATCCGCTCTCC-GTTCCC---AGGA--TTAG-A-T-CATCGTCGG-AA--GGC-A---ATGTTG-CTAAGCG-C--CT-TGT-----TTTA----------------------------------------TCAAACATCTA--TTTAG-----------GGA-TGCAT--A-CAATATGGATATGATGTCAAGAATAAA-C--A---AGT-ACGAA-ACCTAAAACTCTA-TAAATGCTTT-----AATAATTA-TG----A--TAGGG---A--GTG----CCTGT-ATAG-TT-CAA-TA--A-TGA-T-TGATAT-GAG-A-C-GTACTGTGGCGCA--TCC------ATTTTT-T---GT-A--GATG-AA-AC------TCG-GGATG-ACAAACCAT--GTGA----------TTTTAACTTC----GAC--------C-TT-CACA-C----GC-GC-TA-TATT-TAG---------ATC-TAGG--CC------------------ATCTATGC--TTTC-T-GTATCGAAAATT-GATTTATACGT----GAA---------TTGCAATGATGAATCCT----AGT-ATATTATgtaaatcgacagaaccgacaagtttcgcaaacactg
gi|7 : agtgtttgcgaaacttaaaaatttctgccaggcattttggcctgcaagttctccattttgtaggtcattttcaaaatgtgttagtcatcaacaagcaattgtttctacaccattttctatgtgtaagtgttatacatttatA-TCCGCTCCCT-GTT-----------------A----AACGTCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TTTAT------TA----------------------------A--TCAAATGTC-A--GTTGG----------AAGA-T-CAT--A-CAA-ATGAATATGATGTCA-GATTAA--CTTA---AGT-A---A-AC-----AT---A-TAAATC-CTT-----GATAATTA-TG----A--TACGA---A--GTG----CCTGC-ATA--TT-CAG-TA--A-TGA-T-TAATAT-GAG-ATC-GTA---------A--CCC-C-AATA-TTTC-T---GT-A--GAGG-AG-ACTCGGGATCG-GGATG-ACAA--CAC--ATTAT---------TT-------C----GAC--------C-TT-CACT-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AG---TACATGGAA-TATCTATGC--TTTC-T-GCATCGAa
gi|8 : tatgcatcctcgtcagttcaaggtgatgagctctttgaatcgctaataaaatgttaaAGAA-C-AT-AACCC-AAA--------------AGT----------------------GGGTATGATCA-----------ATG-GT-GTACGA-TCCGCTCCCC-GTTCCC---ACT---TTAG-AATGCAACATCGG-AA--GGC-A---ATGT-G-CTAAGCGGC--CT-TGT-----TT-AA------TAC-------------------AGG---TGA--TCCAACATT-A--TTTGG----------AGGA-T-CAT--A-CAA-ATGGATATGATGTCA-GAATAA--C--A---A--------------------------ATG-TTT-----AATAATTA-TG----A--TAGGA---A--GTG----CCTG--ATA--TT-CAA-TA--A-TAA-T-TAATAT-GAG-ATC-GTA---------A--T-C-C-AATA-TTTT-T---GT-A--GAGG-AA-AC------TCG-GGATG-ACAAC---------A----------CT-------T----GAC--------C-AT-CACA-C----GC-GT-TA-TATT-T
gi|9 : A--A-TAA-T-TA---T-GAG-ATC-GTA---------A--TCC-C-AATATATTT-----GT-A--GAGG-AA-AC------TCG-GGATG-ACAAC--AC----------------TT-------C----GAC--------C-AT-CGCA-T----GC-GC-TA-TATT-TAG---------ATC-TAGG--CCT-AC---TACATGGAA-TA---AT-------C-T-GCATCAAAAACT-AATT--TACGT----GAT---------TTGC-------AATCCT----AGG-A-ATTATTCAA-CCTTACTAGAA--AAA---AT-G-T-A-A-GAGCTAC-TT-TTTTTTAATGTATA-ATGTGAG-ACAACTCACAAGTAGTA-GACCGTTTATga
7 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): TGTTTGCGAAACTTAAAAATTTCTGCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTTGTAGGTCATTTTCAAAATGTGTCAGTCATCAACAAGCAATCGTTTCTACACCATTTCTATGTGTTGTA
Unaligned ( gi|14 ): TGTTTGCGAAACTTAAAAATTTCTGCCCAGTCATTTTGGCCTGCAAGTTCTCCACTTTCATAGGTCATTTTCAAAATGTGACAGTCATCAACAAGCAATCGTTTCTACGCCATTTTCTGT
Unaligned ( gi|19 ): GTGTTTGACGAAACTTTAAAAATTCCTGCCAGTCATTTTGGCTGCAAGTTCTCCACTTTTGATTGGTCATATT
Unaligned ( gi|21 ): CATTTTCAATTTTAGCCGGTAAATCCCACAGAACCGACAAGTTTCACAAACACTGTATA
Unaligned ( gi|22 ): AGAATTTGTCAGTCATCAACAAAGCATCGTTTCTACGCCAATTTCTAAGTG
Unaligned ( gi|23 ): TTTAGCCAGTAAATCCGACAGAACCGACAAATTTCGCAAACACTGAAAGA
Unaligned ( gi|27 ): AGTGTTTGCGAAACTTAAAAAATTCTGCC