lowQualScore : 1111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 11 7777777777 22 1 1 1 22222 4444444444444444 222222222 777777777777777777777777777777777777777 3333333333333333 11 22222222222222222 444444444444444 2 111 2222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111 333333 333333333 44444444444444444444444444444 333
lowQualScore : 22 5555555555 6 11 6 6 6 4 6 5 6 0 1 77777 5555555555555555 6 111111111 99 888888888888888888888888888888888888888 1 1 9999999999999999 0 5 66 0 3 44444444444444444 1 888888888888888 4 4 0 777 6 0000000 000000000000000000000000000000000000000000000000000000000000000000000000000000000 1 4 5 4 333333 1 5 777777777 66666666666666666666666666666 6 111
lowQualScore : .. .......... . .. . . . . . . . . . ..... ................ . ......... .. ....................................... . . ................ . . .. . . ................. . ............... . . . ... . ....... ................................................................................. . . . . ...... . . ......... ............................. . ...
lowQualScore : 00 0000000000 0 00 0 0 0 0 0 5 0 5 2 22222 5555555555555555 7 888888888 22 444444444444444444444444444444444444444 1 7 6666666666666666 4 0 99 9 0 22222222222222222 9 333333333333333 0 0 0 222 6 0000000 999999999999999999999999999999999999999999999999999999999999999999999999999999999 4 4 7 3 666666 3 1 333333333 00000000000000000000000000000 5 333
consensus : NAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATNGTTGAATGCAANGACTCGAGAAAAT-NTAACAAA------N-TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG------A--TA--CAC--AGTAC---TGTGA-ATTA-TTTTTGCGTTGCCTTCCGCTATC--AAAC-ATCAGANATTTAGTCTAAT--AACTCGC-GT-T-TTTGGTACTA-GTCCG-AGTAGGATA-T-TCGCT-T-GCAACATTCTGA-A--AAAT-ATCTT-AAATCANGCAGATN--TTTTTNTATC--AGAA-TGAATC--ATC-----NTTANCCA--TCAGTTAAATTTG-TACACAAG-AGTTGCCNAAGT-G-AAGCATAATTTTCGTAA-CTTCTTTTTCTG----AAGAGNTC-CA-ACATTA-TT---TAGTTCCGATA-CTCCGTA
Reference ( gi|1 ) : AAAATGTGATTAT----------CACTGAATAGTGGTTGGTTGTTTAATACGACAACTTGAGAAA-T-CCAACAAA------A-TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG------A--CA--CAC--CGTCC---TGTGA-ATTA-GATTTGTGTTGCCTCCCACTATA--AGAC-ATCAGAAATCTAATTTAAT--AACTTGT-GT-T-TTTGGTATTGGGTCTG-AGTAGGATA-T-T-GCT-A-GCAACTTTCAGA-A--AAATAATCTTCAAATCACACAAATG--TTTTTAAATC--AAAA--GAATT--GTC-----ATGAGCCA--TCAG--AAATTTG-TACACAAG-AGTTGCCCAAAT-T-AACCATAATTTTCATAA-CTTATTTTTCT-----AAAATATC-CA-A-ATTA-TT---TAGTTCCGATA-C-CCGTATG
gi|5 : AAATGTAGTTATTTACAACACCCATTACATAGCGATTGATAGTTAAATGCAAGAACATGAGAAAAT-GTAACAAA------T-AA------AGTAAATA-CCCACATA-----T---GG--TAGCGGATATATA--TA--TAC--TGATC---TGTTA-ATTA-TTTTTGAGTTGCCTT--------------------AAATC-----CAAT--AACTCAT-GTAT-TTTGGTACTACAT-----GTAGGATA-T-T-CAC-ATGCAACTTTCTGA-A--AA
gi|2 : TGTTGAA-ACAATGACTCGAAAAAAT-CTAACAAACGGAGAACTG------AGTCAATA-TCCACACC-----C---GG--TAGAGGAA----A--TA--CAC--AGTAC----------------TTTGCGTTGC--CCTACTCTACCAAAC-ATCAAACATTCAATCTAAT--AACTCAT-TT-TGTTTGGTAC-----------TAAGATA-CAC-GCT-T-GCAAATTTT-------GAATTAT----AAATC--------G--TTTTTA-------------------GTC-----ATG--------CAG--AAA------ACG--------TACCCATGT-G-AAGCATAAATTTCGTTA-TT--TCTTTCTG----AAGAGTTC-CA-ACATTG-TTA--AAGTTTCAATA-CTCTGTA
gi|17 : ACTAGAGAAAAT-TTAACAAA------G-TG------AGTAAATA-TACACATA-----T---GG--GAGACG------A--AA--TAC--
gi|4 : tgTTGAGAAA-CATCAACAAA--------CG------ACTTAATACTCCACATA-----T---AG--TAGAGG------AAGTA--CAC--AATAC---CGTGA-ATTACGTTTTGCGTTGCCTTCCGC--------AC-ATCAAACATC-AGTTGA-----------------TTTGGTACGTAGTCTGCAGT-GAATA-T-TCGCT-T-GCAGATGTCAAATA--AAGT-ATCTT------AC----ATT--TTTTTATATC--AAAA--TGATC--ATCTTTTAAT-ATCCA--TC-GTTATCTTTGTTACACAAACGGTTGCCAAAGT-tcagtacctt
gi|9 : gtttacaatggctAAA-T-ATAACAAA------A-TG------AGTAAATT-TTCAAATA-----TTAAGGAATAGAAA------A--TA--CACAGCATTG---TATGCCATTT-TTTTTGTGTCCCTTTCTGTTATC--AAAC-ATCAGATATTTAATCTAAT--AACTCGCAGC-T-GTTGGTACT-------------AATATT-T-GCT-T-GCAACATTCTGA-A--AA
gi|13 : AA-T-CTAATAAA------C-TGTGAGAGAGTAATTA-TCCACATATGGACT---GG--TAGAAG------A--AATGCAC--AGTACTAGTGTGA-ATTA----TTGTGTTGC
gi|10 : TTTGTGTTGCTTTTCTCTACC--AAAC-ATTAGAAATTTAGTCTAG-----CTCGC-AT-T-TATGGTACTGGTTTTA-AGCAGGGTA-T-TTGCT-T-GCTAATTTCTGA-A--AAATGATCTTCAAATCAGGC--ATA--TTTTTGTATCGGAAAT--GAATC--GTC-----A------A--TCAGC-AAACTT
gi|3 : TTTGCGTTGGCTTCCACTACC--AATT-ATCAGAAATTGAATCTAAT---ACAAGT-GC-C-TT--ATGTTGCTTGCA-ACTCTGATA-T-TCGCT-T-GAAACATTCCTA-A--TAATAGTCTTTAAATCAAGCAGATATTTTTTTTTATC--AGAA--ATATTTAATC-----CTCAGCTACTTC----TAATTTG-TATTCAAG-ACGTGCCAAAGTGT-CA-CATAATTTCC-TAA-CTTCTTTTTCTG----AAGAGGTCAAA-A-ATTT-TA---TAGAT-CGATAGT-CCGTA
gi|6 : CTTCTAC-ATG--AAANTATCAAACAT-TAGTTTAATCTAACTCAC-GA-T-TT-GGTACTATGTCTG-AGTAGGATA-T-TCGCT-T-GCAACATTCAGA-GATAAAT-ATCTT--AATTATTT---TT--TTTTTTTATC--AGAAATGAATC--ATC-----TTTATCCA--TC-GTTATCTTTG-TACACAAG-GGTTGCCAAAGT-G-AGGCAGAAT
gi|12 : TTGT--T-T-TTTGGTAC----TCCG--GT---ATA-A-T-CCT-A--CAAAATTCTG-----AAAT--------AATCAGGCAGATA--TTTTCCCATC--AGAGGTGAATC--ATC-----TTTAGCCA--TCAC--TAATATG---CATAAG-AGTTGTCGAAGT-
gi|7 : -TTTGGTACTAGGTCTG-AGTAGGATA-T-TCGCT-T-GCAGCATTCAGA-GATAAAT-ATCTT--AAT--------TT--TTTTTATATC--AGAAATGAATC--ATCTTTTAATTATCCA--TC-GTTATCTTTG-TACACAAA-GGTTGCCAAAGT-G-AGGCAGAA--TTCAAAAGC------TTCTACATGAAANTATC-AA-ACATTAGTT---TA
gi|8 : ATA-T-T-CCTTA-ACACCATTCTGA-A--AAATAAACTTGAAATCAAGCAGATA--TTTTTGAATCGGAAAT--GAATC--ATC-----TTTAGCCA--TCAG-----T-----------G-AGTTGCCCAAGT-G-A----------TC-----CT--TTTTTCT-----AAAGAGTT-CG-A-A-TA-TTCTATAGTTCCAATA-a
gi|14 : gttctttttgtaatcctaatAATTTG-CATACAAG-AGTTG-CTAAAT-TGAAGCATAATTTTTGTAA-CTTCATTTTCT-----GAAAttctgcatt
gi|16 : ct-AGTTGCTCAAGT-G-AAGCATAATTTTCGTAC-CTTCTTTTTCTG----AAGAGTTC-CACA-ACT--TT---TTGTACCGATagctccattttttttgtagctt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TAATTATTAATTTTTGCCAAATCAGGCATACATTTTTTTTTTTGGTATCAGAAATGAATCAAGGGCCTTCGTTTCACAAGCGTTGCCCAATTGACGCATCTTCGTTACCTCTTTTTCTGAAGAGTTCCAATTT
Unaligned ( gi|15 ): AGTGACACATAATTTCCTAACCTCTGTTTCAGAAGAGTTCCATACTTTTAAATTCTGAAACCCCATATTCATTTA
Unaligned ( gi|18 ): ATATCTTTGCATTAGATACTAATCATCGTTAGCCATCTACAAGTCTTAGAGTTGCCCAAGTG
Alignments
lowQualScore : 4444444444 11 3333333333333333 111111111 22222 222222222222222222222 11 33333333333 1111 11111 1 111111111 1 11111111111111 4444444444444444444 1 11
lowQualScore : 0000000000 2 1 3 55 1 22 5 11 0000000000000000 5 777777777 77 22222 5 999999999999999999999 1 3 666 22 1 9 2 0 5 77777 3 3 3 55555555555 2 3 3 33 3 1 3 2222 55 44444 6 4 3 99 1 888888888 2 7 88 2 44444444444444 3 4444444444444444444 3 1 6 3 0 4 4 1 8 66 5 1 3
lowQualScore : .......... . . . .. . .. . .. ................ . ......... .. ..... . ..................... . . ... .. . . . . . ..... . . . ........... . . . .. . . . .... .. ..... . . . .. . ......... . . .. . .............. . ................... . . . . . . . . . .. . . .
lowQualScore : 5555555555 5 0 7 22 0 66 7 11 0000000000000000 7 444444444 99 44444 7 222222222222222222222 1 0 111 55 9 4 0 1 0 44444 6 6 6 88888888888 8 6 6 00 6 8 6 7777 00 11111 0 7 8 77 0 777777777 0 3 55 3 88888888888888 6 3333333333333333333 3 0 1 3 2 4 4 0 9 77 7 0 8
consensus : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAGA-ATTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAA-CTTCTTTTTC-TGAAGAGTTCCAANATTN-TT-TAGTTCCGATACTCCGTA
Reference ( family-2883 ) : NAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATNGTTGAATGCAANGACTC-GAGAAA-ATNTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TATCAAACATCAGANATTTAGTCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCTGA-A----A--AAT-A-T-CTT-AAATCANGCAGATNTTTTTNT-------ATCAG-A-A-TGAATCATCNT----T-----AN--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGAAGCATAATTTTCGTAA-CTTCTTTTTC-TGAAGAGNTCCAACATTA-TT-TAGTTCCGATACTCCGTA
gi|1 : AAATGTGATTAT----------CACTGAATAGTGGTTGGTTGTTTAATACGACAACTT-GAGAAA--TCCAACAAAA-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--CACACC-GTCC---TG---TG---AATTAG-ATTTGTGTTGCCTCCCAC-TATAAGACATCAGAAATCTAATTTAATAACTTGT-GT-T-TT-TGGTAT-TGG-G-TCTG-AGTAGGATATT-GCTAG-C-AACTT-TCAGA-A----A--AATAA-T-CTTCAAATCACACAAATGTTTTTAA-------ATCAA-A-A--GAATTGTCAT----G-----AG--CCAT-CAG--A-----AATTTG-TACACAAG-AGTTGCCCAAATTAACCATAATTTTCATAA-CTTATTTTTC-T-AAAATATCCAA-ATTA-TT-TAGTTCCGATAC-CCGTA
gi|10 : aTTTGTGTTGCTTTTCTC-TACCAAACATTAGAAATTTAGTC---TAGCTCGC-AT-T-TA-TGGTAC-T-G-GTTTTA-AGCAGGGTATTTGCTTG-CTAAT-T-TCTGA-A----A--AATGA-T-CTTCAAATCAGGC--ATATTTTTGT-------ATCGGAA-A-TGAATCGTCA-----------------AT-CAG-CA-----AACTTtg
gi|11 : -AAATCAGGCATACATTTTTTTTTTTGGTATCAG-A-AATGAATCA--------------AGGGCCTT-CG-----------TTT----CACAAG-CGTTGCCCAATTGACGCAT---CTTCGTTA-CCTCTTTTTC-TGAAGAGTTCCAA
gi|12 : taattattaatttttgccT-T-TT-TGGTAC-T------CCG--GTATAAT-----CCTA-C-AAAAT-TCTGA-A----A------------T-AA-TCAGGCAGATATTTTCCC-------ATCAG-AGG-TGAATCATCTT----T-----AG--CCAT-CA-CTA-----A---TA-TGCATAAG-AGTTGTCGAAGTttt
gi|13 : ttgtA-ATCTAATAAAC-------TGTGAGAGAGTAATTA-TCCACATATGGACT---GG--TAGAAGAAA--TGCACA-GTACTAGTG---TG---AATTA----TTGTGTTGC
gi|14 : -----AATTTG-CATACAAG-AGTTGCTAAATTGAAGCATAATTTTTGTAA-CTTCATTTTC-TGAAAAGCTCCA
gi|15 : ctAGTGACACATAATTTCC-TAA-CCTCTGTTTC-AGAAGAGTTCC-ATACTT-TT-AAATTCTGAAACCCCATAttttttttgtagctt
gi|16 : -AGTTGCTCAAGTGAAGCATAATTTTCGTAC-CTTCTTTTTC-TGAAGAGTTCCACAACT--TT-TTGTACCGATttcattta
gi|17 : GACTA-GAGAAA-ATTTAACAAAG-------TG------AGTAAATA-TACACATA-----T---GG--GAGACGAAA--TACTCA-GTAC---
gi|18 : tATATCTTTGC-------ATTAG-ATA-CTAATCATCGT----T-----AG--CCAT-C---TAC----AAGTCT-T-----AG-AGTTGCCCAAGTGctt
gi|2 : GTTGAA-ACAATGACTC-GAAAAA-ATCTAACAAACGGAGAACTG------AGTCAATA-TCCACACC-----C---GG--TAGAGG--AAATACACA-GTAC---T------------------TTGCGTTGCCCTACTC-TACCAAACATCAAACATTCAATCTAATAACTCAT-TT-TGTT-TGGTAC--------------TAAGATACACGCTTG-C-AA-AT-TTTGA-ATTATA--AATCG-T-TTT-TAGTCATGCAGA
gi|2 : t-A-TAAATCGTTTT----T-----AG--TCATGCAG--A-----AA--------ACG------TACCCATGTGAAGCATAAATTTCGTTA-TTTCTTT--C-TGAAGAGTTCCAACATTG-TTAAAGTTTCAATACTCTGTAaaacgtacccatgtgaagcataaatttcgttatttctttctgaagagttccaacattgttaaagtttcaatactctgta
gi|3 : tgttgaaacaatgactcgaaaaaatctaacaaacggagaactgagtcaatatccacacccggtagaggaaatacacagtactttgcgttgccctactctaccaaacatcaaacattcaatctaataactcattttgtttggtactaagatacacgcttgcaaattttgaattTTTGCGTTGGCTTCCAC-TACCAATTATCAGAAATTGAATCTAATA-CAAGT-GC-C-TTATGTTGC-T-----TGCA-ACTCTGATATTCGCTTG-A-AACAT-TCCTA-A----T--AAT-AGT-CTTTAAATCAAGCAGATATTTTTTTTT-----ATCAG-A-A-------ATATT----T-----AA--TCCT-CAGCTACTTCTAATTTG-TATTCAAG-ACGTGCCAAAGTGTCACATAATTTCC-TAA-CTTCTTTTTC-TGAAGAGGTCAAAAATTT-TA-TAGAT-CGATAGTCCGTA
gi|4 : TACAATGGCTTTGAGAAACATC-AACAAAC--------G------ACTTAATACTCCACATA-----T---AG--TAGAGG--AAGTACACA-ATAC---CG---TG---AATTACGTTTTGCGTTGCCTTCCGCACATCAAACATCAG---TTGA--------------------TT-TGGTACGT-A-G-TCTGCAGT-GAATATTCGCTTG-C-AG-ATGTCAAATA----A--AGT-A-T-CTT-A---C------ATTTTTTTAT-------ATCAA-A-A-TG-ATCATCTTTTAAT-----AT--CCAT-C-GTTA-----TCTTTGTTACACAAACGGTTGCCAAAGT
gi|5 : gttAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATAGTTAAATGCAAGAACAT-GAGAAA-ATGTAACAAAT-------AA------AGTAAATA-CCCACATA-----T---GG--TAGCGG--A--TATATATATAC---TGATCTGTT-AATTAT-TTTTGAGTTGCCTT---------AAA--------------TCCAATAACTCAT-GTAT-TT-TGGTAC-T-A-----CA-TGTAGGATATTCACATG-C-AACTT-TCTGA-A----A--A
gi|6 : -TATCAAACATTAG---TTTAATCTAA---CTCAC-GA-T-TT--GGTAC-T-ATG-TCTG-AGTAGGATATTCGCTTG-C-AACAT-TCAGA-GAT--A--AAT-A-T-CTT--AATTATTT---TTTTTTTTT-------ATCAGAA-A-TGAATCATCTT----T-----AT--CCAT-C-GTTA-----TCTTTG-TACACAAG-GGTTGCCAAAGTGAGGCAGAAT
gi|7 : cttctacatgaaan-TT-TGGTAC-T-A-GGTCTG-AGTAGGATATTCGCTTG-C-AGCAT-TCAGA-G----ATAAAT-A-T-CTT-AA-T--------TTTTTTTAT-------ATCAG-A-AATGAATCATCTT----TTAATTAT--CCAT-C-GTTA-----TCTTTG-TACACAAA-GGTTGCCAAAGTGAGGCAGAA--TTCAAAAGCTTC---TACATGAAANTATCAAACATTAGTT-TA
gi|8 : T-T-TT-TG-----T-A-A-TCCT-AATA---TATTC-CTTAAC-ACCAT-TCTGA-A----A--AAT-A-AACTTGAAATCAAGCAGATATTTTTGA-------ATCGGAA-A-TGAATCATCTT----T-----AG--CCAT-CAGT---------------------G-AGTTGCCCAAGTGA----------TC-----CT--TTTTTC-TAAAGAGTTCGAATATTC-TA-TAGTTCCAATATTCTGCAa
gi|9 : gttcAA-ATATAACAAAA-------TG------AGTAAATT-TTCAAATA-----TTAAGGAATAGAAA--A--TACACA-GCAT---TG---TATGCCATTTT-TTTTGTGTCCCTTTCTGT-TATCAAACATCAGATATTTAATCTAATAACTCGCAGC-T-GT-TGGTAC-T-A--------------ATATTTGCTTG-C-AACAT-TCTGA-A----A--Att
Alignments
lowQualScore : 4444444444 3333333333333333 111111111 22222 222222222222222222222 33333 33333333333 1111 11111 1 111111 111111111 11 1111111111 4444444444444444444 1
lowQualScore : 0000000000 1 1 1 3 4 8 5 0 0000000000000000 5 777777777 77 22222 5 999999999999999999999 1 0 666 4 11111 2 0 5 77777 3 3 3 55555555555 2 3 3 33 3 1 3 2222 55 44444 6 000000 888888888 8 3 55 4444444444 55 4 8888888888888888888 3 1 4 0 0 888 1 5 1 3
lowQualScore : .......... . . . . . . . . ................ . ......... .. ..... . ..................... . . ... . ..... . . . ..... . . . ........... . . . .. . . . .... .. ..... . ...... ......... . . .. .......... .. . ................... . . . . . ... . . . .
lowQualScore : 5555555555 0 0 0 2 2 0 7 1 0000000000000000 7 444444444 99 44444 7 222222222222222222222 1 1 111 2 22222 0 1 0 44444 6 6 6 88888888888 8 6 6 00 6 0 6 7777 00 11111 0 000000 777777777 0 6 88 3333333333 55 0 6666666666666666666 3 0 9 8 5 888 0 7 0 8
consensus : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
Reference ( family-2883 ) : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTNTT-TAGTTCCGATACTCCGTA
gi|1 : AAATGTGATTAT----------CACTGAATAGTGGTTGGTTGTTTAATACGACAACTT-GAGAAA--TCCAACAAAA-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--CACACC-GTCC---TG---TG---AATTAG-ATTTGTGTTGCCTCCCAC-TATAAGACATCAGAA-A-TCTAATTTAATAACTTGT-GT-T-TT-TGGTAT-TGG-G-TCTG-AGTAGGATATT-GCTAG-C-AACTT-TCAGA-A----A--AATAA-T-CTTCAAATCACACAAATGTTTTTAA-------ATCAA-A-A--GAATTGTCAT----G-----AG--CCAT-CAG--A-----AATTTG-TACACAAG-AGTTGCCCAAATTAACCATAATTTTCATAACTTATTTTTCT-AAAATATCCAA-ATTATT-TAGTTCCGATAC-CCGTA
gi|10 : aTTTGTGTTGCTTTTCTC-TACCAAACATTAGAA-A-TTTAGTC---TAGCTCGC-AT-T-TA-TGGTAC-T-G-GTTTTA-AGCAGGGTATTTGCTTG-CTAAT-T-TCTGA-A----A--AATGA-T-CTTCAAATCAGGC--ATATTTTTGT-------ATCGGAA-A-TGAATCGTCtg
gi|11 : -AAATCAGGCATACATTTTTTTTTTTGGTATCAG-A-AATGAATCA--------------AGGGCCTT-CG-----------TTT----CACAAG-CGTTGCCCAATTGACGCAT---CTTCGTTACCTCTTTTTCTGAAGAGTTCCAAaatcagcaaactt
gi|12 : taattattaatttttgccT-T-TT-TGGTAC-T------CCG--GTATAAT-----CCTA-C-AAAAT-TCTGA-A----A------------T-AA-TCAGGCAGATATTTTCCC-------ATCAG-A-GGTGAATCATCTT----T-----AG--CCAT-CA-CTA-----A---TA-TGCATAAG-AGTTGTCGAAGTttt
gi|13 : ttgtA-ATCTAATAAAC-------TGTGAGAGAGTAATTA-TCCACATATGGACT---GG--TAGAAGAAA--TGCACA-GTACTAGTG---TG---AATTA----TTGTGTTGC
gi|14 : -----AATTTG-CATACAAG-AGTTGCTAAATTGAAGCATAATTTTTGTAACTTCATTTTCTGAAAAGCTCC---ATTTTT-T
gi|15 : ctAGTGACACATAATTTCC-TAACCTCTGTTTCAGAAGAGTTCC-ATACTTTT-AAATTCTGAAACCCCATAttgtagctt
gi|16 : -AGTTGCTCAAGTGAAGCATAATTTTCGTACCTTCTTTTTCTGAAGAGTTCCACAACTTTT-T-GTACCGATttcattta
gi|17 : GACTA-GAGAAA-ATTTAACAAAG-------TG------AGTAAATA-TACACATA-----T---GG--GAGACGAAA--TACTCA-GTAC---
gi|18 : tATATCTTTGC-------ATTAG-ATA-CTAATCATCGT----T-----AG--CCAT-C---TAC----AAGTCT-T-----AG-AGTTGCCCAAGTGctt
gi|2 : GTTGAA-ACAATGACTC-GAAAAA-ATCTAACAAACGGAGAACTG------AGTCAATA-TCCACACC-----C---GG--TAGAGG--AAATACACA-GTAC---T------------------TTGCGTTGCCCTACTC-TACCAAACATCAA-ACA-TTCAATCTAATAACTCAT-TT-TGTT-TGGTAC--------------TAAGATACACGCTTG-C-AA-AT-TTTGA-ATTATA--AATCG-T-TTT-TAGTCATGCAGA
gi|2 : t-A-TAAATCGTTTT----T-----AG--TCATGCAG--A-----AA--------ACG------TACCCATGTGAAGCATAAATTTCGTTATTTCTTT--CTGAAGAGTTCCAACATTGTTAAAGTTTCAATACTCTGTAaaacgtacccatgtgaagcataaatttcgttatttctttctgaagagttccaacattgttaaagtttcaatactctgta
gi|3 : tgttgaaacaatgactcgaaaaaatctaacaaacggagaactgagtcaatatccacacccggtagaggaaatacacagtactttgcgttgccctactctaccaaacatcaaacattcaatctaataactcattttgtttggtactaagatacacgcttgcaaattttgaattTTTGCGTTGGCTTCCAC-TACCAATTATCAG-A-AATTGAATCTAATA-CAAGT-GC-C-TTATGTTGC-T-----TGCA-ACTCTGATATTCGCTTG-A-AACAT-TCCTA-A----T--AAT-AGT-CTTTAAATCAAGCAGATATTTTTTTTT-----ATCAG-A-A-------ATATT----T-----AA--TCCT-CAGCTACTTCTAATTTG-TATTCAAG-ACGTGCCAAAGTGTCACATAATTTCC-TAACTTCTTTTTCTGAAGAGGTCAAAAATTTTA-TAGAT-CGATAGTCCGTA
gi|4 : TACAATGGCTTTGAGAAACATC-AACAAAC--------G------ACTTAATACTCCACATA-----T---AG--TAGAGG--AAGTACACA-ATAC---CG---TG---AATTACGTTTTGCGTTGCCTTCCGCACATCAAACATCAG------TTGA-------------------TT-TGGTACGT-A-G-TCTGCAGT-GAATATTCGCTTG-C-AG-ATGTCAAATA----A--AGT-A-T-CTT-ACATT---------TTTTTAT-------ATCAA-A-A-TG-ATCATCTTTTAAT-----AT--CCAT-C-GTTA-----TCTTTGTTACACAAACGGTTGCCAAAGT
gi|5 : gttAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATAGTTAAATGCAAGAACAT-GAGAAA-ATGTAACAAAT-------AA------AGTAAATA-CCCACATA-----T---GG--TAGCGG--A--TATATATATAC---TGATCTGTT-AATTAT-TTTTGAGTTGCCT------TA-------------------AATCCAATAACTCAT-GTAT-TT-TGGTAC-T-A-----CA-TGTAGGATATTCACATG-C-AACTT-TCTGA-A----A--A
gi|6 : -TATCAAACATTAG-----TTTAATCTAA---CTCAC-GA-T-TT--GGTAC-T-ATG-TCTG-AGTAGGATATTCGCTTG-C-AACAT-TCAGA-GAT--A--AAT-A-T-CTT--AATTATTT---TTTTTTTTT-------ATCAGAA-A-TGAATCATCTT----T-----AT--CCAT-C-GTTA-----TCTTTG-TACACAAG-GGTTGCCAAAGTGAGGCAGAAT
gi|7 : cttctacatgaaan-TT-TGGTAC-T-A-GGTCTG-AGTAGGATATTCGCTTG-C-AGCAT-TCAGA-G----ATAAAT-A-T-CTT-AATTT---------TTTTTAT-------ATCAG-A-AATGAATCATCTT----TTAATTAT--CCAT-C-GTTA-----TCTTTG-TACACAAA-GGTTGCCAAAGTGAGGCAGAATT
gi|8 : T-T-TT-TG-----T-A-A-TCCT-AATA---TATTC-CTTAAC-ACCAT-TCTGA-A----A--AAT-A-AACTTGAAATCAAGCAGATATTTTTGA-------ATCGG-A-AATGAATCATCTT----T-----AG--CCAT-CAGT---------------------G-AGTTGCCCAAGTGA----------TC----CT--TTTTTCTAAAGAGTTCGAATATTCTA-TAGTTCCAATATTCTGCAcaaaagcttctacatgaaantatcaaacattagtttaa
gi|9 : gttcAA-ATATAACAAAA-------TG------AGTAAATT-TTCAAATA-----TTAAGGAATAGAAA--A--TACACA-GCAT---TG---TATGCCATTTT-TTTTGTGTCCCTTTCTGT-TATCAAACATCAG-ATA-TTTAATCTAATAACTCGCAGC-T-GT-TGGTAC-T-A--------------ATATTTGCTTG-C-AACAT-TCTGA-A----A--Att
Alignments
lowQualScore : 4444444444 3333333333333333 111111111 22222 222222222222222222222 33333 33333333333 1111 11111 1 111111 111111111 11 1111111111 4444444444444444444 1
lowQualScore : 0000000000 1 1 1 3 4 8 5 0 0000000000000000 5 777777777 77 22222 5 999999999999999999999 1 0 666 4 11111 2 0 5 77777 3 3 3 55555555555 2 3 3 33 3 1 3 2222 55 44444 6 000000 888888888 8 3 55 4444444444 55 4 8888888888888888888 3 1 4 0 0 888 0 5 1 3
lowQualScore : .......... . . . . . . . . ................ . ......... .. ..... . ..................... . . ... . ..... . . . ..... . . . ........... . . . .. . . . .... .. ..... . ...... ......... . . .. .......... .. . ................... . . . . . ... . . . .
lowQualScore : 5555555555 0 0 0 2 2 0 7 1 0000000000000000 7 444444444 99 44444 7 222222222222222222222 1 1 111 2 22222 0 1 0 44444 6 6 6 88888888888 8 6 6 00 6 0 6 7777 00 11111 0 000000 777777777 0 6 88 3333333333 55 0 6666666666666666666 3 0 9 8 5 888 3 7 0 8
consensus : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
Reference ( family-2883 ) : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
gi|1 : AAATGTGATTAT----------CACTGAATAGTGGTTGGTTGTTTAATACGACAACTT-GAGAAA--TCCAACAAAA-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--CACACC-GTCC---TG---TG---AATTAG-ATTTGTGTTGCCTCCCAC-TATAAGACATCAGAA-A-TCTAATTTAATAACTTGT-GT-T-TT-TGGTAT-TGG-G-TCTG-AGTAGGATATT-GCTAG-C-AACTT-TCAGA-A----A--AATAA-T-CTTCAAATCACACAAATGTTTTTAA-------ATCAA-A-A--GAATTGTCAT----G-----AG--CCAT-CAG--A-----AATTTG-TACACAAG-AGTTGCCCAAATTAACCATAATTTTCATAACTTATTTTTCT-AAAATATCCAA-ATTATT-TAGTTCCGATAC-CCGTA
gi|10 : aTTTGTGTTGCTTTTCTC-TACCAAACATTAGAA-A-TTTAGTC---TAGCTCGC-AT-T-TA-TGGTAC-T-G-GTTTTA-AGCAGGGTATTTGCTTG-CTAAT-T-TCTGA-A----A--AATGA-T-CTTCAAATCAGGC--ATATTTTTGT-------ATCGGAA-A-TGAATCGTCtg
gi|11 : -AAATCAGGCATACATTTTTTTTTTTGGTATCAG-A-AATGAATCA--------------AGGGCCTT-CG-----------TTT----CACAAG-CGTTGCCCAATTGACGCAT---CTTCGTTACCTCTTTTTCTGAAGAGTTCCAAaatcagcaaactt
gi|12 : taattattaatttttgccT-T-TT-TGGTAC-T------CCG--GTATAAT-----CCTA-C-AAAAT-TCTGA-A----A------------T-AA-TCAGGCAGATATTTTCCC-------ATCAG-A-GGTGAATCATCTT----T-----AG--CCAT-CA-CTA-----A---TA-TGCATAAG-AGTTGTCGAAGTttt
gi|13 : ttgtA-ATCTAATAAAC-------TGTGAGAGAGTAATTA-TCCACATATGGACT---GG--TAGAAGAAA--TGCACA-GTACTAGTG---TG---AATTA----TTGTGTTGC
gi|14 : -----AATTTG-CATACAAG-AGTTGCTAAATTGAAGCATAATTTTTGTAACTTCATTTTCTGAAAAGCTCC---ATTTTT-T
gi|15 : ctAGTGACACATAATTTCC-TAACCTCTGTTTCAGAAGAGTTCC-ATACTTTT-AAATTCTGAAACCCCATAttgtagctt
gi|16 : -AGTTGCTCAAGTGAAGCATAATTTTCGTACCTTCTTTTTCTGAAGAGTTCCACAACTTTT-T-GTACCGATttcattta
gi|17 : GACTA-GAGAAA-ATTTAACAAAG-------TG------AGTAAATA-TACACATA-----T---GG--GAGACGAAA--TACTCA-GTAC---
gi|18 : tATATCTTTGC-------ATTAG-ATA-CTAATCATCGT----T-----AG--CCAT-C---TAC----AAGTCT-T-----AG-AGTTGCCCAAGTGctt
gi|2 : GTTGAA-ACAATGACTC-GAAAAA-ATCTAACAAACGGAGAACTG------AGTCAATA-TCCACACC-----C---GG--TAGAGG--AAATACACA-GTAC---T------------------TTGCGTTGCCCTACTC-TACCAAACATCAA-ACA-TTCAATCTAATAACTCAT-TT-TGTT-TGGTAC--------------TAAGATACACGCTTG-C-AA-AT-TTTGA-ATTATA--AATCG-T-TTT-TAGTCATGCAGA
gi|2 : t-A-TAAATCGTTTT----T-----AG--TCATGCAG--A-----AA--------ACG------TACCCATGTGAAGCATAAATTTCGTTATTTCTTT--CTGAAGAGTTCCAACATTGTTAAAGTTTCAATACTCTGTAaaacgtacccatgtgaagcataaatttcgttatttctttctgaagagttccaacattgttaaagtttcaatactctgta
gi|3 : tgttgaaacaatgactcgaaaaaatctaacaaacggagaactgagtcaatatccacacccggtagaggaaatacacagtactttgcgttgccctactctaccaaacatcaaacattcaatctaataactcattttgtttggtactaagatacacgcttgcaaattttgaattTTTGCGTTGGCTTCCAC-TACCAATTATCAG-A-AATTGAATCTAATA-CAAGT-GC-C-TTATGTTGC-T-----TGCA-ACTCTGATATTCGCTTG-A-AACAT-TCCTA-A----T--AAT-AGT-CTTTAAATCAAGCAGATATTTTTTTTT-----ATCAG-A-A-------ATATT----T-----AA--TCCT-CAGCTACTTCTAATTTG-TATTCAAG-ACGTGCCAAAGTGTCACATAATTTCC-TAACTTCTTTTTCTGAAGAGGTCAAAAATTTTA-TAGAT-CGATAGTCCGTA
gi|4 : TACAATGGCTTTGAGAAACATC-AACAAAC--------G------ACTTAATACTCCACATA-----T---AG--TAGAGG--AAGTACACA-ATAC---CG---TG---AATTACGTTTTGCGTTGCCTTCCGCACATCAAACATCAG------TTGA-------------------TT-TGGTACGT-A-G-TCTGCAGT-GAATATTCGCTTG-C-AG-ATGTCAAATA----A--AGT-A-T-CTT-ACATT---------TTTTTAT-------ATCAA-A-A-TG-ATCATCTTTTAAT-----AT--CCAT-C-GTTA-----TCTTTGTTACACAAACGGTTGCCAAAGT
gi|5 : gttAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATAGTTAAATGCAAGAACAT-GAGAAA-ATGTAACAAAT-------AA------AGTAAATA-CCCACATA-----T---GG--TAGCGG--A--TATATATATAC---TGATCTGTT-AATTAT-TTTTGAGTTGCCT------TA-------------------AATCCAATAACTCAT-GTAT-TT-TGGTAC-T-A-----CA-TGTAGGATATTCACATG-C-AACTT-TCTGA-A----A--A
gi|6 : -TATCAAACATTAG-----TTTAATCTAA---CTCAC-GA-T-TT--GGTAC-T-ATG-TCTG-AGTAGGATATTCGCTTG-C-AACAT-TCAGA-GAT--A--AAT-A-T-CTT--AATTATTT---TTTTTTTTT-------ATCAGAA-A-TGAATCATCTT----T-----AT--CCAT-C-GTTA-----TCTTTG-TACACAAG-GGTTGCCAAAGTGAGGCAGAAT
gi|7 : cttctacatgaaan-TT-TGGTAC-T-A-GGTCTG-AGTAGGATATTCGCTTG-C-AGCAT-TCAGA-G----ATAAAT-A-T-CTT-AATTT---------TTTTTAT-------ATCAG-A-AATGAATCATCTT----TTAATTAT--CCAT-C-GTTA-----TCTTTG-TACACAAA-GGTTGCCAAAGTGAGGCAGAATT
gi|8 : T-T-TT-TG-----T-A-A-TCCT-AATA---TATTC-CTTAAC-ACCAT-TCTGA-A----A--AAT-A-AACTTGAAATCAAGCAGATATTTTTGA-------ATCGG-A-AATGAATCATCTT----T-----AG--CCAT-CAGT---------------------G-AGTTGCCCAAGTGA----------TC----CT--TTTTTCTAAAGAGTTCGAATATTCTA-TAGTTCCAATATTCTGCAcaaaagcttctacatgaaantatcaaacattagtttaa
gi|9 : gttcAA-ATATAACAAAA-------TG------AGTAAATT-TTCAAATA-----TTAAGGAATAGAAA--A--TACACA-GCAT---TG---TATGCCATTTT-TTTTGTGTCCCTTTCTGT-TATCAAACATCAG-ATA-TTTAATCTAATAACTCGCAGC-T-GT-TGGTAC-T-A--------------ATATTTGCTTG-C-AACAT-TCTGA-A----A--Att
blockSeqs : TTACAACACC C A G T T T C CGGAGAACTG C TGGACT AA AAA T TGATCTGTTAATTATT T GCA C AAA T G TGTA G A G GGTTTTAA G A T AA G T T TTAT TA GAT C AGGCAT TTTTTTGGT A T AT TTAATT GG G AGCTACTTCTAATTTGTA C C C G ACA A C C
blockSeqs : A T T . . CTGTGAGAG . TTAA . AAA . TGTATGCCATTTTT T TC C ACA T A CAGC . . . AGTCTGCA T . . CA . T . AT . CGT T AGGCAG TTTT A . GT TTAAT . . GTTATCTTTGTTA . G A G AAC . C T
blockSeqs : . G . . GTG . T . AAA . TAGTGTGAATTA C TC C AAA C A CAT . . . ATGTCTGA A . . CT . T . . . AGT G ATGCAG GT . . AT T . . GTTATCTTTGTA . A C G AAA . T T
blockSeqs : . . TAA . C . AAG . CGTGAATTACGT C AC T ATA T A TTT . . . AGGTCTGA T . . CA . C . . . AAA . AAGCAG CC . . AT T . . GTTATCTTTGTA . C A G AAT . C T
blockSeqs : . ATG . T . A . T C GT T . T . TGC . . . AATCCTA G . . CA . A . . . AT . AAGCAG GC . . T T . . TACAAGTCTT . C A . AT . .
blockSeqs : . CG . T . A . A . T . . . CGA . . . TGCAA G . . CA . T . . . AT . AGGC AT . . C T . . ACTAATATG . C C . . .
blockSeqs : T . . . . . . . . ACAT G . . CA . A . . . AT . ATTT TT . . T T . . AGAAA . A G .
blockSeqs : . . . CCG G . . T . A . . . . . . AT . . T T . . GTTT . A G
blockSeqs : . . . A . . . A . T . . . . . GA . . T . . . AGT . A .
blockSeqs : . . . . . . . A . T . . . . . . A
blockSeqs : . C
blockSeqCons : AAA** CGTGTGAATTACT******** T* GTTATCTTTGTA******* AAN
originalCons : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGG--A--TACACA-GTAC---TG---TG---AATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCAT-CAGTTA-----AATTTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
finalCons : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATA-----T---GG--TAGAGGAAA--TACACA-GTACCGTGTGAATTACT--------TTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-T-A-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-AT-GAATCATCTT----T-----AG--CCAT-CGTTATCTTTGTA-------CACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
Alignments
lowQualScore : 4444444444 3333333333333333 111 11111 3333333333333333333 33333 3333333333 1111 11111 1 111111 111111111 1 11 1111111111 444444444444444444444 1
lowQualScore : 0000000000 1 1 1 3 4 8 5 0 0000000000000000 5 000 44444 1 3333333333333333333 1 0 666 4 11111 2 0 5 77777 3 3 3 5555555555 2 3 3 33 3 1 3 2222 55 44444 6 000000 888888888 2 3 22 4444444444 55 999999999999999999999 3 1 4 0 0 0 888 0 5 1 3
lowQualScore : .......... . . . . . . . . ................ . ... ..... . ................... . . ... . ..... . . . ..... . . . .......... . . . .. . . . .... .. ..... . ...... ......... . . .. .......... .. ..................... . . . . . . ... . . . .
lowQualScore : 5555555555 0 0 0 2 2 0 7 1 0000000000000000 7 000 33333 7 4444444444444444444 1 1 111 2 22222 0 1 0 44444 6 6 6 8888888888 8 6 6 00 6 0 6 7777 00 11111 0 000000 777777777 0 6 22 3333333333 55 999999999999999999999 3 0 9 8 5 4 888 3 7 0 8
consensus : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATAT---GG-----TAGAGGAAATACACAGTACC-G---TGTGA-ATTAT-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-TA-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCATC-GTTA----TCT---TTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
Reference ( family-2883 ) : NAAATGTGGTTATTTACAACACCCACTGNATAGCGGTTGGTNGTTNAATACAACGACTT-GAGAAA-ATCTAACAAAN-------TG------AGTAAATA-TCCACATAT---GG-----TAGAGGAAATACACAGTACC-G---TGTGA-ATTAC-TTTTGCGTTGCCTTCCGC-TACCAAACATCAG-A-A-TTTAATCTAATAACTCGC-GT-T-TT-TGGTAC-TA-G-TCCG-AGTAGGATATTCGCTTG-C-AACAT-TCNGA-A----A--AAT-A-T-CTT-AAATCANGCAGATATTTTTNT-------ATCAG-A-A-TGAATCATCTT----T-----AG--CCATC-GTTA----TCT---TTG-TACACAAG-AGTTGCCNAAGTGANGCATAATTTTCGTAACTTCTTTTTCTGAAGAGTTCCAANATTTTT-TAGTTCCGATACTCCGTA
gi|1 : AAATGTGATTAT----------CACTGAATAGTGGTTGGTTGTTTAATACGACAACTT-GAGAAA--TCCAACAAAA-------TG------AGTAAATA-TCCACATAT---GG-----TAGAGGA--CACACCGT-CC-----TGTGA-ATTAG-ATTTGTGTTGCCTCCCAC-TATAAGACATCAG-A-AATCTAATTTAATAACTTGT-GT-T-TT-TGGTAT-TG-GGTCTG-AGTAGGATATT-GCTAG-C-AACTT-TCAGA-A----A--AAT-AAT-CTTCAAATCACACAAATGTTTTTAA-------ATCAA-A-A--GAATTGTCAT----G-----AG--CCATCAG--A----AAT---TTG-TACACAAG-AGTTGCCCAAATTAACCATAATTTTCATAACTTATTTTTCT-AAAATATCCAA-ATTATT-TAGTTCCGATAC-CCGTA
gi|10 : aTTTGTGTTGCTTTTCTC-TACCAAACATTAGAA-A-TTTAGTC---TAGCTCGC-AT-T-TA-TGGTAC-TG-GTTTTA-AGCAGGGTATTTGCTTG-CTAAT-T-TCTGA-A----A--AATGA-T-CTTCAAATCAGGC--ATATTTTTGT-------ATCGGAA-A-TGAATCGTCtg
gi|11 : -AAATCAGGCATACATTTTTTTTTTTGGTATCAG-A-AATGAATCA--------------AGGGCCTTC-GTT---------------T-CACAAG-CGTTGCCCAATTGACGCAT---CTTCGTTACCTCTTTTTCTGAAGAGTTCCAAaatcagcaaactt
gi|12 : taattattaatttttgccT-T-TT-TGGTAC-T-----CCG--GTATAAT-----CCTA-C-AAAAT-TCTGA-A----A------------T-AA-TCAGGCAGATATTTTCCC-------ATCAG-A-GGTGAATCATCTT----T-----AG--CCATC-ACTA----------ATA-TGCATAAG-AGTTGTCGAAGTttt
gi|13 : ttgtA-ATCTAATAAAC-------TGTGAGAGAGTAATTA-TCCACATAT---GGACTGGTAGAAGAAATGCACAGTACTAG---TGTGA-ATTA----TTGTGTTGC
gi|14 : T---TTG-CATACAAG-AGTTGCTAAATTGAAGCATAATTTTTGTAACTTCATTTTCTGAAAAGCTCC---ATTTTT-T
gi|15 : ctaaAGTGACACATAATTTCC-TAACCTCTGTTTCAGAAGAGTTCC-ATACTTTT-AAATTCTGAAACCCCATAttgtagctt
gi|16 : -AGTTGCTCAAGTGAAGCATAATTTTCGTACCTTCTTTTTCTGAAGAGTTCCACAACTTTT-T-GTACCGATttcattta
gi|17 : GACTA-GAGAAA-ATTTAACAAAG-------TG------AGTAAATA-TACACATAT---GG-----GAGACGAAATACTCAGTACC-
gi|18 : tATATCTTTGC-------ATTAG-ATA-CTAATCATCGT----T-----AG--CCATC---TACAAGTCT---T---------AG-AGTTGCCCAAGTGtt
gi|2 : GTTGAA-ACAATGACTC-GAAAAA-ATCTAACAAACGGAGAACTG------AGTCAATA-TCCACACCC---GG-----TAGAGGAAATACACAGTAC-------------------TTTGCGTTGCCCTACTC-TACCAAACATCAA-ACA-TTCAATCTAATAACTCAT-TT-TGTT-TGGTAC-------------TAAGATACACGCTTG-C-AA-AT-TTTGA-ATTATA--AATCG-T-TTT-TAGTCATGCAGA
gi|2 : t-A-TAAATCGTTTT----T-----AG--TCAT---------------------GCAGAAA-ACGTACCCATGTGAAGCATAAATTTCGTTATTTC--TTTCTGAAGAGTTCCAACATTGTTAAAGTTTCAATACTCTGTAaaacgtacccatgtgaagcataaatttcgttatttctttctgaagagttccaacattgttaaagtttcaatactctgta
gi|3 : tgttgaaacaatgactcgaaaaaatctaacaaacggagaactgagtcaatatccacacccggtagaggaaatacacagtactttgcgttgccctactctaccaaacatcaaacattcaatctaataactcattttgtttggtactaagatacacgcttgcaaattttgaattTTTGCGTTGGCTTCCAC-TACCAATTATCAG-A-AATTGAATCTAATA-CAAGT-GC-C-TTATGTTGC-T----TGCA-ACTCTGATATTCGCTTG-A-AACAT-TCCTA-A----T--AAT-AGT-CTTTAAATCAAGCAGATATTTTTTTTT-----ATCAG-A-A-------ATATT----T-----AA--TCCTCAGCTACT--TCTAATTTG-TATTCAAG-ACGTGCCAAAGTGTCACATAATTTCC-TAACTTCTTTTTCTGAAGAGGTCAAAAATTTTA-TAGAT-CGATAGTCCGTA
gi|4 : TACAATGGCTTTGAGAAACATC-AACAAAC--------G------ACTTAATACTCCACATAT---AG-----TAGAGGAAGTACACAATACC-G---TG--A-ATTACGTTTTGCGTTGCCTTCCGCACATCAAACATCAG------TTGA-------------------TT-TGGTACGTA-G-TCTGCAGT-GAATATTCGCTTG-C-AG-ATGTCAAATA----A--AGT-A-T-CTT-ACATT---------TTTTTAT-------ATCAA-A-A-TG-ATCATCTTTTAAT-----AT--CCATC-GTTA----TCT---TTGTTACACAAACGGTTGCCAAAGT
gi|5 : gttAAATGTAGTTATTTACAACACCCATTACATAGCGATTGATAGTTAAATGCAAGAACAT-GAGAAA-ATGTAACAAAT-------AA------AGTAAATA-CCCACATAT---GG-----TAGCGGATATATATA-TACT-GATCTGTTA-ATTAT-TTTTGAGTTGCCT------TA-------------------AATCCAATAACTCAT-GTAT-TT-TGGTAC-TA-----CA-TGTAGGATATTCACATG-C-AACTT-TCTGA-A----A--A
gi|6 : -TATCAAACATTAG-----TTTAATCTAA---CTCAC-GA-T-TT--GGTAC-TATG-TCTG-AGTAGGATATTCGCTTG-C-AACAT-TCAGA-GAT--A--AAT-A-T-CTT--AATTATTT---TTTTTTTTT-------ATCAGAA-A-TGAATCATCTT----T-----AT--CCATC-GTTA----TCT---TTG-TACACAAG-GGTTGCCAAAGTGAGGCAGAAT
gi|7 : cttctacatgaaan-TT-TGGTAC-TA-GGTCTG-AGTAGGATATTCGCTTG-C-AGCAT-TCAGA-G----ATAAAT-A-T-CTT-AATTT---------TTTTTAT-------ATCAG-A-AATGAATCATCTT----TTAATTAT--CCATC-GTTA----TCT---TTG-TACACAAA-GGTTGCCAAAGTGAGGCAGAATT
gi|8 : T-T-TT-TG-----TA-A-TCCT-AATA---TATTC-CTTAAC-ACCAT-TCTGA-A----A--AAT-A-AACTTGAAATCAAGCAGATATTTTTGA-------ATCGGAA-A-TGAATCATCTT----T-----AG--CCATC-A---------------G-T------G-AGTTGCCCAAGTGA----------TC----CT--TTTTTCTAAAGAGTTCGAATATTCTA-TAGTTCCAATATTCTGCAcaaaagcttctacatgaaantatcaaacattagtttaa
gi|9 : gttcAA-ATATAACAAAA-------TG------AGTAAATT-TTCAAATATTAAGG-----AATAGAAAATACACAGCATT-G---TATGCCATTTT-TTTTGTGTCCCTTTCTGT-TATCAAACATCAG-ATA-TTTAATCTAATAACTCGCAGC-T-GT-TGGTAC-TA--------------ATATTTGCTTG-C-AACAT-TCTGA-A----A--Att