lowQualScore : 1111111111111111111111111111
lowQualScore : 11 2 2222222222 2 2222 1 4 3333 11 3333 111 2222222222222 1111 11 11111 1 1111111 33333333333333333333 222 11111 11 4444444 1 22222222 1111 4444 11 1111 22222222 3333333333333 111111111111 22222 333333 1111111111111 111 1 1111 4444444 111111 1111111 111 1 22222222 111 222 111 222 11 1 1 1 1111 111 11 11 55555555555 1 111 222 2222 11 1 2222 222 111 22222 333333333 11 11 33 1 1 111 1 111 33333333333333 7777777777777777777777777777777777777777777777777777777777777777 11 444444 22 1111 3333 111 2 111 222222 1111 111 22 11 1 1 11 1 22222 11 11111111 33 111 0000000000000000000000000000 1111 111111111 4444444444
lowQualScore : 4 66 66 4 22 4 4 4 55 4 99 4 99 8888888888 3 6 9 5 7777 1 0 0 5555 00 9 5 5 2 2222 555 7777777777777 0000 5 11 5 66 22222 1 2 888 4444444 4 55555555555555555555 7777 4 4 4 2 777 2 4 4 00000 00 4 4444444 8 4 66 4 4 1 33 2 4 44444444 0 99999 2222 2222 5 5 00 5 2222 77 33333333 6 6 6 1111111111111 5 222222222222 77 33333 6 6 333333 7777777777777 3 111 1 3 4444 4444444 0 111111 66 5 4 777 5555555 555 5 1 3 5 8888 11111111 6 666 5 000 000 8 777 0 33 0 0 0 4444 111 33 88 88888888888 3 666 333 7 8888 44 3 0000 777 55 111 55 88888 111111111 3 66 33 11 0 9 0 2 0 111 8 8 8 6 444 77777777777777 8 8 8 8 7777777777777777777777777777777777777777777777777777777777777777 0 22 2 9 2 888888 0 44 1 4444 3 7777 777 3 0 111 222222 5555 444 44 22 0 0 33 0 55555 33 3 8 8 66666666 1 6 44 555 8888 6666666666666666666666666666 5 5 77 2222 000000000 0000000000 8
lowQualScore : . .. .. . .. . . . .. . .. . .. .......... . . . . .... . . . .... .. . . . . .... ... ............. .... . .. . .. ..... . . ... ....... . .................... .... . . . . ... . . . ..... .. . ....... . . .. . . . .. . . ........ . ..... .... .... . . .. . .... .. ........ . . . ............. . ............ .. ..... . . ...... ............. . ... . . .... ....... . ...... .. . . ... ....... ... . . . . .... ........ . ... . ... ... . ... . .. . . . .... ... .. .. ........... . ... ... . .... .. . .... ... .. ... .. ..... ......... . .. .. .. . . . . . ... . . . . ... .............. . . . . ................................................................ . .. . . . ...... . .. . .... . .... ... . . ... ...... .... ... .. .. . . .. . ..... .. . . . ........ . . .. ... .... ............................ . . .. .... ......... .......... .
lowQualScore : 4 11 11 4 88 6 4 4 44 4 00 4 22 5555555555 2 0 7 0 2222 9 0 8 0000 99 6 0 0 0 6666 666 5555555555555 6666 0 11 0 99 55555 9 1 222 4444444 4 88888888888888888888 4444 4 4 4 7 999 4 4 4 99999 66 4 6666666 9 4 11 4 4 2 88 4 4 88888888 7 88888 1111 1111 7 7 44 7 1111 11 88888888 7 7 7 4444444444444 7 666666666666 99 77777 7 7 555555 2222222222222 2 777 7 3 2222 7777777 7 555555 99 0 5 666 1111111 111 1 4 0 7 0000 99999999 7 555 7 555 888 0 555 2 88 0 0 0 8888 000 88 33 77777777777 3 777 333 3 3333 33 3 8888 000 88 000 88 88888 888888888 2 55 22 00 0 8 0 5 8 888 0 0 0 0 000 88888888888888 0 0 0 0 8888888888888888888888888888888888888888888888888888888888888888 8 55 5 2 5 555555 2 00 2 8888 2 0000 000 2 0 000 555555 0000 555 88 55 0 0 22 0 00000 88 5 0 0 77777777 7 7 22 333 2222 5555555555555555555555555555 7 7 11 1111 555555555 2222222222 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTAT-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGA-TGTCC-NGGTCCCC-AT-CTACTCCTGAG--TAGGC---GAAAAAA-------------CGA----G-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATG---TGTTT---NGTTA-A-TATA-A-ATT-T-A-CATTTGCAGAG-GATTTGGTGA-GTG-AAAA---C-GATAG--AAGC-ATAGT--TCTTAT-TT-T--AAGG-AC-GGTGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATGCGG----ATCTGATGTACAACG-TACGGTACGG-ATGAC-AAGC-TTTT----A-AGTA-N--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-C----TGCT--TATTA-TG--TT-AAAAAA-TA--GA--AAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACT--GG-GGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTG-TGGA-CT-T--CA--T--AT-CAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GTCA--ATGA--C-CT-TG-CAT-A--GGCCAGACT-T-TTAAA--AAAAA--ATTGC---C---ACGAAT-AT-G-AAAAT---TAACAATA----TGA-CAAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTC-CG----TTATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TT-A-AC-G-AG--T-C-TAAGT-TA-CAANTA-T------GA----AAAATAATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCGGTC--A-TTTAAGAAT-TAAGGGCA--AGATTTTCTGATA-T-GACAGAAT--NTTAT-TATGGC-TACATT-AATTC-AC-ATAA-TAGTA-TTTTT-TA-----ACTA--TNC-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTT-A-ATATTC-ATCAG-ACACATCCAC-AT---AT-ACAT-GTATTTAGA-T-ATCAAT-AAAACAG----ATATC-AAATAGCTACT----G--CTAGATCCC-GTGTA
Reference ( gi|3 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTATATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGAT-TGTCC-TGGTCGCC-AT-CTACTCCTGAG--T-GGC---GAAAAAA-------------CGA----G-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATG--TTGTGT---AGTTA-A-TATA-A-ATT-T-A-CATTTGTAGAG-GACTTGGTGA-GTG-AAAA---T-GATAG--AAGC-ATAGT--AC--AT-TT-T--AAGG-AC-GGTGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATGCGG----ATCTGATGTA----G-TACGGTACGG-ATGAA-AAGC-TTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-C----TGCT--TATTATTG--TT-AAAAAA-TA--G---AAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGGGGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--A-CCTACAAGAATATTG-TGGA-CT-T--CA--T--AT-CAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GTC---ATGA--C-CT-TG-CAT-A--GGCCAGACT-T-TTAAA--AAAAA--ATTAC---C---AGAAAT-AT-G-AAAAT---TAACAATA----TGA-TAAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTC-TG----TTATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TT-A-AT-G-AG--T-C-TAAGT-TA-CAATTA-T------GA----AAAAT-ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGGTTTTCAGTC--A-TTTAAGAAT-TAGGGGCA--AGATTTTCT-ATA-T-GACAGAAT--TTTAT-CATGGC-TACATTAAATTC-AC-ATAA-TAGTA-TTTTT-TA-----ACTA--TAC-CCT-TT--A--TGAAGTTAA-TTTGATGAA--TT-A-ATATTC-ATCAG-ACACATCCACTAT---AT-ACAT-GTATTTAGA-T-ATCAAT-AAAACAG----ATTTC-AAATAGCTACT----G--CTAGATCCC-ATGTA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCA--CCTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAATTTTTTCGTGTGTCTGTGTGCA-TA-TCTT--GTTA-CAGGGAACATTTAAGA-TGTCT-CTGTCGCCAAT-CTACTCCTGAGT-T-AGC---GCAAACA-------------CGA----GTGTCAAA-CAATGCAG--GT-CT-----AATGT-AAC-ATCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATG--TGGTTT---ATTAA-A-TATA-A-TTTCT-ACCA--TGCAG-C-GACTTGGTGAGGTG-AAAA---TGGATAGA-AAGCAATAGTA-AC--CTATT-T--AAGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATAC---A-AGAATGCGG------CTGATGTA----G-TACGGTACGG-ATGAA-AAGCTTTTT----A-AATA-G--T---T-AA-ATG-------------GA-T--CTGGAATTTGATGAC-----A-C----TGC---TATTA-TG--TT--AAAAA-TA--GA--AAAT--AT--GGATA--TATAG---ATT---GAAT-TGCA-CA----ACACT---------GGGGGGGGGG---T--C--A-TAGAAAT----TCAG--A-CCTAC-AGAATATTGTTGGA-CT-T--CATGT--AT-CAT-A-GCTCAT---AT-ATGG--CT--ATTTTC-GTCA--ATGA--C-CT-GG-CAT-A--GGCCAGACT-T-TTAAA--AAAAATTCTTGC---C---ATGAAT-AT-G-AAAAT---TAACAATA----TGA-CAAA-ATA----TTAATT--TTT-GAA-TCCACTTGGACA-----TCTTTCGTG-----TA-TGTG-TACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GT-CAG-AA---TGCA---------AATTCGC-AT-GA-C-C---TA-A-AT-G-A---T-C-T-AGT-TACCAAATG-C------AA----TAAATAATC-----TTTGACT-AGT-GGGTGTCACTGCCGCA--ATGGGG---TTCTGTC--A-TT--AGAAT-TA-GGGCA--AG--TTTCT-ATAGT-GACAGA-----TTAT-TA-GGC-T-CATT-AATTC-ACAATAC-TAGTATTTTTT-TA-----ACTA--TAC-CTTATC--A--TG-AGTAGA-TTTGATGAGACTT-ATATAGTCTATTAG-ACA---TCAC-AC---AT-ACATGGTATTTAGA-TAATCAAT--AAAC-G----ATATC-AAATAGCTAT-----------GATCCT-GTG
gi|1 : taagGCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGA--TCTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTAT-TTTTTCGTGTTTGTGTGT--AT-ATC--TGGTTTA-CAGTGAACATTTAAGA-TGTCC-TGGTCAGC-ATTCTACTCTGGCG--T-AGC---GCGACAA-------------CGA----G-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT----TGTTT----GTTA-AGTATA-A--TT-T-A-CATTT-TGCGA-GACTTGGTGA-GTG-AGAA---T-GAGAG--A-----TA-T--AC--CTATT-T--AAGG-AC-GGTG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATGCGG----AT-TGATGTA----GCTACGGTACGG-ATGAA-AAGG-TTTT----A--GTA-C--TTAGT-AA-A-G-------------GA-TTCCTGGAATTTGATTGC----AATC----TGCT--TATTAT-G--TT-AAAAA--TA--G---AATT--AT--GGATA--TATAGG-CAGT---GA-T-GTCATCA----ACAT--------GGGGGGGAGGGG---T--C--ACTAGACATG-TG---G--A-CCTACGA---TAGTG-TAGA-CTATAACA--TGTAT-CAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTT---CTGAGCCACT-TG-CACGA--AGCCAGACT-T-TTTAA--AAAAA--ATT-CTTGC---TGAAAT-ATAG-AAAAT---TAACA-TAGCAATGA-CAAA-ATA---TTTAATTA-TTTA-TA-T-CACTTGGACA--T--TTTTTC-TG----TTATTGT--TA-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GT-CAGCAA---TGCATCTAGAGATAA---GC-AG-GAGC-C---AT-ACATCG-AG--T-CTTATGTATG-CAA-TA-T------GATGATACAATAATCTAT--TTTGACTGAGT--GGTGTCAATGCC-------AGGGGTTTATGTCC--ATTTTAAGAATGTA--GGCA--AGATTATCTAATA-T-AACGACAT--ATTAA-TTTCGCATACATTATATT--AC-ATAA-TAGTA-TTTTT-TT-----ACTA--TAC-CCT-TC--A--T---ATT---TTTGA--GA--TT-T-ATAC----TTAG-A-ATCTTCATCATTA-ATAACAT-CTATATATT-T-ATCAAT-CAAAAAG----ATT-----AT--CCAAT----G--CTAAATCCC-ATGacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|6 : aGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTAT-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTA-AG-TGTCCTTGGTCACC-AT-CTACTCCTGAG--TAGGCCG-AAAAAAA-------------CGG----G-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTG---TGTTT---TGTTA-A-TATA-ACATT-TAA-CATTTGCACAGAGATTTGGTGA-GTGAAAAA---T-GATAG--AAGC-ATAGT--TCCGAT-TT-T--AAGA-AC-GGTGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATGCGG----ATCTGATGTAC---G-TACGG-------TGAC-AAGC-TTTT----A-CGTATT--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGA-----AA-C----TGCT--TATTA-TG--TTAAAAAAA-TA--GAAAAAATA-AT--GG--A--TATAGGACAGT---GAAT-CGCATCA----ACACTGGGGAGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--A-TCTATACAAATTATG-TGGACCT-T--CA--T--GTATAT-ATGCTCAT---GTGATGGAACT--ATTctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|8 : taggGCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTAT-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGG-TGTCC-AGGTCCCC-AT-CTACTCCTG-GTTT-GGC---GAAAAAA-------------CGA----G-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAG---TATTT---AGTTA-A-TATATA-ATT-A-A-CATTTGCAGA--GATTTCGTGA-GT---------------G--AAGC-ATAGT--TCTTAT-TT-T--AAGG-AC-GGTATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTATA--TTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCA-ATATGTCC-AGGTACCC-AT-CTACGCCTGGGC-T-GGCAAAAAAAAAA-------------CCA----G-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAA-------TGT---A----------------T-T-A-CATTTGCAGA--TATTTCTTGA-GTG-AAAA---C-GATAA--AAAA-ATAGT--TCTTGT-TT-T--AAGA-AC-GGTATGAAGGATAAA--TGCCACCCCC--CTTTCAC
gi|22 : aggGCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|32 : taggGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGcat
gi|5 : atagg-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAAT-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGA-TGTCC-AGGTCTCC-AT-CTACTACTGAG--AAGGC---GAAAAAAAACACCCAAAAAACGG----G-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATG---TATTT---CATTATT-TATA-A-ATT-T-A-CATTTGTAGA--GATTTGGTGA-GTG-AAAA---T-GACAG--CAGC-ATAGT--TCCTAT-TT-T--AAGG-AC-GGTGTGAAGGATAAAGGTACC-CCCAC--------CACCACCACCACACGA-G-AGAATGCGG----ATCTGATGTACAACG-TACGGTACGG-ATGACTAAGC-TTTTTTAAA-AGTGTT--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGCATGCT--TATTA-TA--TT-ACAAAATTA--GA--AAAT--TT--TGAT---TTTA-GACAGT---GAATAGTCATCA----ACATT--------------GGGCG---T--C--A-TAGAAATGCTGCAGA--C-CCTAC-AGAATATTGTTGGA-CT-G--CATGT--AT-CAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GCC---ATAA--C-CA-TG-CAT-A--GGCCAGACT-T-TTAAA--AAgacaactttcggag
gi|30 : atagggctCTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTTtatccatacctgaaa
gi|11 : gagaactaTAACTAT-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGA-TGTCC-TGGTCCCC-AT-CTACTCTTGAG--A-AGC---CGAAAAA-------------CAACCAGG-GG-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGCATTTTGT---TATT----TATA-A-ATT-T-A-CATTTGCAGAG--ATGTGGTGA-GTG-AAAA---C-GATAG--AAGC-ATAGT--TC--CT-ATAT--AAGG-AC-GGTGTGAAGGATAAAGATATC-CCCCC------------------ACACGA-A-AGAATGCGGCCGGATCTGATGTACAACG-TACGGTACGG-GTTAC-AAGC-TTTT----A-AGTA-T--T--
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGA-TGTCC-AGGTCCCC-AT-CTACCCCTGAG--AAGGC---GAAAAAA-------------CGA----A-AG-AAA-CAATGCAG--GTACT-----AATGTAAACAtat
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATA--TTTTGTTAAAGT-A-A-TATA-T-ATT-T-A-CATTTGCAGAG--ATCTGGCGA-GTG-AAAA---C-GTCAG--AAGC-ATAGC--TCTTAT-TT-A--AAGG-AC-AGTATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-------------G----ATCTGACATACAACG-TACGGTACGG-ATGAC-AAGC-TTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAA-TTTATGGAATTTTATGAC----AA-C----TGTT--TATTGT
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATG---TATTT---CGGTA-A-TACA-A-ATG-T-A-CATTTGCAGA--CATTTGGTg
gi|13 : GA-GTG-AAAAAAAT-GATAAGAAAGC-ATAGTTTCT--AT-TC-TTAAAGG-AC-GGTGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|4 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttgtgcagagagagattgtctgagtcaC--CCCCCACACCACCACCATACGACGCAGAATGCGG----ACTCGATGTC----G-TACAGTACGGTATG-A-AAGC-TTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAA-TTGATGGCACAAAA-A----TGCTCATATTA-TGAATT-AAAAAA-TAAGA---AAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACT-----GGGCGGGGGGGGTG---T--CCGA-TA-AAATG-TGCAAG--ACCCTAC-AGAATA-TG-T-GA-CT-T--CA--T--GTACATCATGCTCAT--AATAAT---TCTTAATTTTCAGTCAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATTAAATTTAATT--ATTACG--CTTGACACATAAT-GAAAAATTAATAACAATA----TGACTAAACATAATTTTTAATTTGTTTAGTA-T-CACATTGACATCTGGTCTTTC-CATCGTTTATTGTGTTA-ACTT-ACTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAGAAA---TGCA---------AA---GCGAT-GA-CGCACATTAA-AT-G--GTTT-C-TACGT-TA-CAACTG-TAAGAAAGA----GAGAT-ATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTATGGAG--TTTCAGTCCAA-ATTAAGAAT-TGAGGGCA----ATTTTCTGATA-T-GACAGAATAATATATGAATGGC-TACATT-AATTC-AC-ATAATTAGTA-TTTTTGTAAACGTATTA--TCCTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATTTT-A-ATA-CC-ATCAGAAAATACCCACCATTCAAC-A-AT-GTA-TTAGA-T-ATCAATAAAAACAGGACTATATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|17 : aggta-------------GA-TTCTTGGAATTTGATGAC----AA-C----TGCT--TA-TAATG--TT-ACAAAA-TA--GA--AAAT--TT--GG--A--TATAGGATAGT---GAATCGTTATCA----ACATTGGGGGGAGGGGGGAGGGGG---TGCC--A-TAGAAATG-TGC-AG--A-CCTAcaattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|31 : GGGGGGGGGGGGGGGAG---C--C--A-TA-AAAT--TGCAAGACA-CCTGTAAGAACATTA-TGGT-AT-T--CA--T--
gi|25 : GGGGGGG---G--C--A-TAGAAATG-TGCAGA----CCTACAA-AATAT------A-CA-T--GA-----AT-CAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-
gi|7 : ---TTTAATT-----AGTAAT-CACT--GACATCT--TCTTC---G----TTATTGTA-TA--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGT-CAG-AAGACTACA---------A----GC-ATTGA-C-C---CT-A-AC-ATAG--TACACAAGT-T--C--TTACT------GA----AAATA-ATCC-T--T--GACTGAGT-GG-TGTCA-T---------TGGCGGGTTTCAGTC--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAAT--CCTAT-CATGGC-CTCAT--AATTCAAC-ATAA-TATTA---TTT-TA-----ACCATTTTC-CCT-TTC-A--TG-AGTTAA-TTTGATGAGTTTT-A-ATATTC-ATC----CACATTCA----------------TATTTAGA-T-ATCAAT-AAAACAG----ACTtttcc
gi|29 : TTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C-----------G-AG--T-T-T-AGT-CA-CAAATA-T------GA----AAAAT-AT-G-T--TTTGACTGatctaagtaaacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|10 : -CCT-TTCCA--TGAAGTTAA-TTTGATGAAT-TT-ACATATTC-ATC----C-CATC---------AT-ACAT-GTATTTAGATT-AACAAT-AAAACAG----ATATC-CA-----CACTCAGAG--CTAGATCCC-
gi|24 : --A--TGAAGCTAAATTTGATGAA--TTTA-ATGTTC-ATC----CACATC-----------------ATATCTAGA-T-ATCAAT-AAAGCAG----ATCCC-Acactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|21 : ttccAGA-T-ATCAAT-AAAACAG----ATATC-AAGTAGCTA-T----A---TAGATCCC-ATGTtttacaaaatctctctctctctct
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 2222222222 22 111 2222222222222 11 11111 1111111 1111111 33333 111 1111 1111 2222 11 1111 11111111 2222222222222 111111 1111 11 1111111 111 1 1111 22222222222 1111 11 1 22 1 111111111 11 111 22222 111 111 22 111 11111 2222 1 1 1111 1111 111 2222 22 111 22222222222222 22222222222222222222222 1111 11111 11 3333333 11 11 2222 111 2 1111 222222222 111 11 1111111111 777777777777777777777777777777 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 1 3 4 77 1111111111 1 777 8 0 55 4 1 55 2 4 4 66 4 333 66 4444444444444 4 33 4 66 11111 1 1 555 3333333 4 777 6 9999999 4 44 4 4 4 3 00000 666 3 55 4 4 9999 4 55 4 4 4 4 111 4 1 1 4 55 4444 2 0 4 4 2 0000 6666 5 00 5555 55 55555555 5 5 5 7777777777777 5 222222 0000 66 5 66 5 5 5 5 77 5 33 3333333 55 000 0 1 2222 888 0 33333333333 66 4 2 55 6666 4 66 3 0 5 5 66 00 1 5 77 0 888 6 8 666666666 8 8 8 8 11 8 8 444 00000 666 777 33 111 88888 1111 3 0 0 4444 9999 0 8 8 0 0 111 0 5555 0 3 8 88 11 8 6 8 99 6 6 6 6 888 88888888888888 6 6 6 99999999999999999999999 8888 7 4444 66666 22 99 5 8 1 8888888 88 9 8 11 8 0 1111 666 3 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 2222222222 1 5 999999999999999999999999999999 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . .. .......... . ... . . .. . . .. . . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . .. . . . . ..... ... . .. . . .... . .. . . . . ... . . . . .. .... . . . . . .... .... . .. .... .. ........ . . . ............. . ...... .... .. . .. . . . . .. . .. ....... .. ... . . .... ... . ........... .. . . .. .... . .. . . . . .. .. . . .. . ... . . ......... . . . . .. . . ... ..... ... ... .. ... ..... .... . . . .... .... . . . . . ... . .... . . . .. .. . . . .. . . . . ... .............. . . . ....................... .... . .... ..... .. .. . . . ....... .. . . .. . . .... ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . .......... . . .............................. . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 9 8 0 99 7777777777 4 111 9 1 44 4 0 44 9 4 4 44 4 999 11 4444444444444 4 33 4 11 11111 9 1 555 0000000 0 777 3 4444444 0 99 0 0 0 6 99999 444 6 00 0 0 1111 0 55 0 0 0 9 555 0 6 3 0 00 9999 2 1 4 4 5 6666 1111 0 66 6666 11 99999999 7 7 7 5555555555555 0 888888 6666 99 0 99 7 0 7 7 99 0 66 3333333 77 000 1 4 1111 888 1 22222222222 11 4 9 66 2222 4 99 2 0 0 0 99 66 4 7 99 1 000 7 0 666666666 0 0 0 0 00 0 0 000 00000 888 555 22 000 55555 2222 2 0 0 8888 8888 8 0 0 8 8 888 8 0000 8 2 0 88 22 0 0 0 22 7 7 7 7 333 55555555555555 7 7 7 77777777777777777777777 5555 5 2222 77777 33 22 0 0 0 8888888 00 6 0 00 0 8 2222 666 2 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 9999999999 4 7 999999999999999999999999999999 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTAT-G--TT-AAAAAAT-A-G--AAAAT--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--ACC-TACAAGAATATTGT-GGA-CT-T--CATGTAT-CAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TTAAA---AA-----AAA--NTT---GCCGCGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCCGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-CG-AGT--C-TAAGT-TA-CAANTACGA----AAAATA-----ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATT----TT--A-ATATTC-ATCA--G-AC-ACATCCAC--CAT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCCCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTNGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-N--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTAT-G--TT-AAAAAAT-A-G--AAAAT--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--ACC-TACAAGAATATTGT-GGA-CT-T--CAT--AT-CAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TTAAA---AA-----AAA--ATT---GCCACGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCCGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-CG-AGT--C-TAAGT-TA-CAANTATGA----AAAATA-----ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGG-TTTCGGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCTGATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATN--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATT----TT--A-ATATTC-ATCA--G-AC-ACATCCAC-ATAT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTA-T-TTTTTCGTGTTTGTGTGTATATC-----TGGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCA-TTCTACTCTGGCGTAGCGC---GACAA-----------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-ATA-A--TT-T-AC-ATTTTGC-GAG----ACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTATTT---AAGGACGG-TG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGTA--GC-TACGGTACGG-ATGAA-AAGGTTTT----A--GTA-C--TTAGT-AA-A-G-------------GATT-CCTGGAATTTGATTGCA----ATCTGC----T--TATTAT-G--TT-AAAAA-T-A-G--AAT-T--ATGG--ATA--TATAGG-CAGT---GA-T-GTCATCAACAT------------GGGGGGGAGGGG------T--C--ACTAGACATG-TG---G--ACC-TACGA---TAGTGT-AGA-CTATAACATGTAT-CAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTC--TG--AGCCACT-TGC-ACGA--AGCCAGACT-T-TTTAA---AA-----AAA--ATTCTTGCTG-AAATA-TAGAAAA--T--TAACATAGCA-ATGAC-AAA-ATA---TTTAATTAT--TTA-TA-T-CACTTGGACA--T--TTTTTCTGT----TATTGT-T-A-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GTC-AGCAA---TGCATCTAGAGATAA---GC-AG-GAGC---C-ATACATCG-AGT--CTTATGTATG-CAA-TATGATGATACAATA-----ATCTATT--TTGACTGAGT-G-GTGTCAATGCC-------AGGGG-TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA-GATTTATACTTAGA-ATCTTC-ATCATTA-ATAACATC-----TAT---A------TATT-----T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATT----TA--C-ATATTC-ATC------C--CATC------AT---AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-T-CTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-ATTT-GCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAACGTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-T--T--cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-ATTT-GCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAACGTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAATT-TATGGAATTTTATGACA----A-CTGT----T--TATTGT-G--tat
gi|13 : T-GCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttg-------------GATT-CTTGGAATTTGATGACA----A-CTGC----T--TATAAT-G--TT-ACAAAAT-A-G--AAAAT--TTGG----A--TATAGGATAGT---GAATCGTTATCAACAT----TGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGCA-G--ACC-TA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-T-CTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAAT-CTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCAT---GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-G--T---T-AA-ATG-------------GAT---CTGGAATTTGATGACA------CTGC----T---ATTAT-G--TT-AAAAA-T-A-G--AAAAT--ATGG--ATA--TATAG---ATT---GAAT-TGCA-CAACAC----TGGGG---GGGGGG------------T--C--A-TAGAAAT--T-CAG---ACC-TACA-GAATATTGTTGGA-CT-T--CATGTAT-CAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GT-CAATG--A--C-CT-GGC-AT-A--GGCCAGACT-T-TTAAA---AA-----AAATTCTT---GCCATGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA----TTAATT-T--TT-GAA-TCCACTTGGACATC------TTTCGTG---TA-TGTGT-ACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GTC-AG-AA---TGCA---------AATTCGC-AT-GA-C---C-TAA-A-TG-A-T--C-T-AGT-TACCAAATGCAA----TAAATA-----ATC---T--TTGACT-AGTGG-GTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGAC----TT--ATATAGTCTATTA--G-AC-A---TCAC-ACAT---AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATT----T---A-ATGTTC-ATC------C-ACATC-----------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGCAG---ACC-TACAA-AATAT------A-CA-T--GA---AT-CAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-ATTT-GCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AGT--T-T-AGT-CA-CAAATATGA----AAAATA-------TG-TT--TTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-T-CTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTATTG--TT-AAAAAAT-A-G--AAA-T--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--ACC-TACAAGAATATTGT-GGA-CT-T--CAT--AT-CAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GT-CA-TG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TTAAA---AA-----AAA--ATT---ACCAGAAATA-T-GAAAA--T--TAACA----ATATGAT-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCTGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-TG-AGT--C-TAAGT-TA-CAATTATGA----AAAAT------ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA------TT--A-ATATTC-ATCA--G-AC-ACATCCACTATAT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACACC-TGTAAGAACATTAT-GGT-AT-T--CAT--
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----CGTACAGTACGGTATGA--AAGCTTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAATT-GATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAAT-AAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACTGGGC---GGGGGGGGTG--------T--CCGA-TA-AAATG-TGCAAG--ACCCTACA-GAATAT-GT-G-A-CT-T--CAT--GTACATCATGCTCAT--AATAAT---TCTTAATTTTCAGT-CAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATTAAATTTAATTATTACG--CTT---GACAC--ATAAT-GAAAAATTAATAACA----ATATGACTAAACATAATTTTTAATT-TGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTTTATTGTGTTA-ACTTA-CTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAG-AAA--TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTTC-TACGT-TA-CAACTGTAA----GAAAGAGAGATATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTATGGAG--TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCAA----TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATT----TT--A-ATA-CC-ATCA--GAAA-ATACCCAC--CATTCAACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-T-CTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-ATTT-GTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-T--TT-AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGCATGCT--TATTAT-A--TT-ACAAAATTA-G--AAAAT--TTTG--ATT--T-TAG-ACAGT---GAATAGTCATCAACAT----TGGGC---G-----------------T--C--A-TAGAAATGCTGCAGA--CCC-TACA-GAATATTGTTGGA-CT-G--CATGTAT-CAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GC-C-ATA--A--C-CA-TGC-AT-A--GGCCAGACT-T-TTAAA---AA-----caattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-T-CTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-ATTT-GCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---ACGTACGG-------TGAC-AAGCTTTT----A-CGTATT--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGA-A----A-CTGC----T--TATTAT-G--TTAAAAAAAT-A-GAAAAAATA-ATGG----A--TATAGGACAGT---GAAT-CGCATCAACAC----TGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--ATC-TATACAAATTATGT-GGACCT-T--CAT--GTATAT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT------AGTAAT-CACT--GACATCT--TCTT--CGT----TATTGTAT-A--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGTC-AG-AAGACTACA---------A----GC-ATTGA-C---C-CTA-A-CATAGTA-CACAAGT-T--C--TTACTG----AAAATA-----ATCC-TT----GACTGAGTGG--TGTCATTGGC---------GGG-TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTT----TT--A-ATATTC-ATC------C-ACATTCA----------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-T-CTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-ATTT-GCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTA---TATTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-T-CTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAATGT-A------------------------T-T-AC-ATTT-GCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 2222222222 22 111 2222222222222 11 11111 1111111 1111111 33333 111 1111 1111 2222 11 1111 11111111 2222222222222 111111 1111 11 1111111 111 1 1111 22222222222 1111 11 1 111111111 11 111 22222222222222 222 111 11111 2222 1 1 1111 1111 111 2222 22 111 22222222222222 22222222222222222222222 1111 111 11 3333333 11 11 2222 111 1 1111 222222222 111 11 111 55555555555555555555555555555 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 3 2 4 77 1111111111 1 777 8 0 55 4 1 55 1 4 4 66 4 333 66 4444444444444 4 33 4 66 11111 1 1 555 3333333 4 777 8 9999999 4 44 4 4 4 3 00000 666 3 55 4 4 9999 4 55 4 4 4 111 4 1 1 4 55 4444 2 0 4 4 2 0000 6666 5 00 5555 55 77777777 5 5 5 7777777777777 5 222222 0000 66 5 66 5 5 5 5 77 5 33 3333333 55 000 0 1 2222 888 0 33333333333 66 4 2 55 6666 4 66 3 0 5 8888 5 77 0 888 6 8 666666666 8 8 8 8 11 8 8 8 444 22222222222222 555 111 88888 1111 3 0 0 4444 9999 0 8 8 0 0 111 0 5555 0 3 8 88 11 8 6 8 99 6 6 6 6 888 88888888888888 6 6 6 99999999999999999999999 8888 7 99 2 4444 111 22 99 5 8 1 8888888 88 1 8 11 8 0 1111 666 6 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 222 33 5 33333333333333333333333333333 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . .. .......... . ... . . .. . . .. . . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . .. . . . . ..... ... . .. . . .... . .. . . . ... . . . . .. .... . . . . . .... .... . .. .... .. ........ . . . ............. . ...... .... .. . .. . . . . .. . .. ....... .. ... . . .... ... . ........... .. . . .. .... . .. . . . .... . .. . ... . . ......... . . . . .. . . . ... .............. ... ... ..... .... . . . .... .... . . . . . ... . .... . . . .. .. . . . .. . . . . ... .............. . . . ....................... .... . .. . .... ... .. .. . . . ....... .. . . .. . . .... ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . ... .. . ............................. . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 0 4 0 99 7777777777 4 111 9 1 44 4 0 44 0 4 4 44 4 999 11 4444444444444 4 33 4 11 11111 9 1 555 0000000 0 777 9 4444444 0 99 0 0 0 6 99999 444 6 00 0 0 1111 0 55 0 0 0 555 0 6 3 0 00 9999 2 1 4 4 5 6666 1111 0 66 6666 11 11111111 7 7 7 5555555555555 0 888888 6666 99 0 99 7 0 7 7 99 0 66 3333333 77 000 1 4 1111 888 1 22222222222 11 4 9 66 2222 4 99 2 0 0 9999 7 99 1 000 7 0 666666666 0 0 0 0 00 0 0 0 000 22222222222222 222 000 55555 2222 2 0 0 8888 8888 8 0 0 8 8 888 8 0000 8 2 0 88 22 0 0 0 22 7 7 7 7 333 55555555555555 7 7 7 77777777777777777777777 5555 5 22 2 2222 777 33 22 0 0 0 8888888 00 4 0 00 0 8 2222 666 0 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 333 77 7 99999999999999999999999999999 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTAT-G--TT-AAAAAAT-A-G--AAAAT--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--ACC-TACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TT-AAA---AA-----AAA--CT--TGCCGCGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCCGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-CG-AGT--C-TAAGT-TA-CAANT--ACGA----AAAATA---ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTAT-G--TT-AAAAAAT-A-G--AAAAT--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--ACC-TACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TT-AAA---AA-----AAA--NT--TGCCGCGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCCGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-CG-AGT--C-TAAGT-TA-CAANT--ACGA----AAAATA---ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTA-T-TTTTTCGTGTTTGTGTGTATATC-----TGGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCA-TTCTACTCTGGCGTAGCGC---GACAA-----------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-ATA-A--TT-T-AC-ATTTTGC-GAG----ACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTATTT---AAGGACGG-TG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGTA--GC-TACGGTACGG-ATGAA-AAGGTTTT----A--GTA-C--TTAGT-AA-A-G-------------GATT-CCTGGAATTTGATTGCA----ATCTGC----T--TATTAT-G--TT-AAAAA-T-A-G--AAT-T--ATGG--ATA--TATAGG-CAGT---GA-T-GTCATCAACAT------------GGGGGGGAGGGG------T--C--ACTAGACATG-TG---G--ACC-TACGA---TAGTGT-AGA-CTATAACATGTATCAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTC--TG--AGCCACT-TGC-ACGA--AGCCAGACT-T-TTTAAA---AA-----AAA--TTCTTGCTG-AAATA-TAGAAAA--T--TAACATAGCA-ATGAC-AAA-ATA---TTTAATTAT--TTA-TA-T-CACTTGGACA--T--TTTTTCTGT----TATTGT-T-A-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GTC-AGCAA---TGCATCTAGAGATAA---GC-AG-GAGC---C-ATACATCG-AGT--CTTATGTATG-CAA-T--ATGATGATACAATA---ATCTATT--TTGACTGAGT-G-GTGTCAATGCC-------AGGGG-TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA--GATTT---ATAC----TTAG-A-ATCTTCAT--CATTAATAAC-AT-CTATATATT-T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATTTAC-ATATTC-ATC---------CCAT--CAT-----AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-T-CTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-ATTT-GCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAACGTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-T--T--cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-ATTT-GCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAACGTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAATT-TATGGAATTTTATGACA----A-CTGT----T--TATTGT-G--tat
gi|13 : T-GCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttg-------------GATT-CTTGGAATTTGATGACA----A-CTGC----T--TATAAT-G--TT-ACAAAAT-A-G--AAAAT--TTGG----A--TATAGGATAGT---GAATCGTTATCAACAT----TGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGCA-G--ACC-TA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-T-CTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAAT-CTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCAT---GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-G--T---T-AA-ATG-------------GAT---CTGGAATTTGATGACA------CTGC----T---ATTAT-G--TT-AAAAA-T-A-G--AAAAT--ATGG--ATA--TATAG---ATT---GAAT-TGCA-CAACAC----TGGGG---GGGGGG------------T--C--A-TAGAAAT--T-CAG---ACC-TACA-GAATATTGTTGGA-CT-T--CATGTATCAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GT-CAATG--A--C-CT-GGC-AT-A--GGCCAGACT-T-TT-AAA---AA-----AAATTCT--TGCCATGAATA-T-GAAAA--T--TAACA----ATATGAC-AAA-ATA----TTAATT-T--TT-GAA-TCCACTTGGACATC------TTTCGTG---TA-TGTGT-ACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GTC-AG-AA---TGCA---------AATTCGC-AT-GA-C---C-TAA-A-TG-A-T--C-T-AGT-TACCAAAT--GCAA----TAAATA---ATC---T--TTGACT-AGTGG-GTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGACTTATATAGTCTATTAG-ACA---TCACA-CAT-----AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATTT-A-ATGTTC-ATC----CACATC-------------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGCAG---ACC-TACAA-AATAT------A-C------ATGAATCAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-ATTT-GCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AGT--T-T-AGT-CA-CAAAT--ATGA----AAAATA-----TG-TT--TTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-T-CTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGC----T--TATTATTG--TT-AAAAAAT-A-G--AAA-T--ATGG--ATA--TATAGGACAGT---GAAT-GTCATCAACAC----TGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--ACC-TACAAGAATATTGT-GGA-CT-T--CAT--ATCAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GT-CA-TG--A--C-CT-TGC-AT-A--GGCCAGACT-T-TT-AAA---AA-----AAA--AT--TACCAGAAATA-T-GAAAA--T--TAACA----ATATGAT-AAA-ATA---TTTAATT-T--TTAGTA-T-CACTTGGACATCT--TCTTTCTGT----TATTGTGT-A-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GTC-AG-AA---TGCA---------AA---GC-AT-GA-C---C-TTA-A-TG-AGT--C-TAAGT-TA-CAATT--ATGA----AAAAT----ATCT-TT--TTGACTGAGTGG-GTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA--TTA-ATATTC-ATCAG-ACACATCCACTATAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACACC-TGTAAGAACATTAT-GGT-AT-T--CAT
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----CGTACAGTACGGTATGA--AAGCTTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAATT-GATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAAT-AAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACTGGGC---GGGGGGGGTG--------T--CCGA-TA-AAATG-TGCAAG--ACCCTACA-GAATAT-GT-G-A-CT-T--CATGTA-CATCATGCTCAT--AATAAT---TCTTAATTTTCAGT-CAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATT-AAATTTAATTATTACG--CT--TGACAC--ATAAT-GAAAAATTAATAACA----ATATGACTAAACATAATTTTTAATT-TGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTTTATTGTGTTA-ACTTA-CTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAG-AAA--TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTTC-TACGT-TA-CAACTGTAAGA----AAGAGAGATATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTATGGAG--TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCAA----TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATTTTA-ATA-CC-ATCAGAAAATACCCAC--CATTCA--ACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-T-CTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-ATTT-GTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-T--TT-AT-AA-A-G-------------GATT-CCTGGAATTTGATGACA----A-CTGCATGCT--TATTAT-A--TT-ACAAAATTA-G--AAAAT--TTTG--ATT--T-TAG-ACAGT---GAATAGTCATCAACAT----TGGGC---G-----------------T--C--A-TAGAAATGCTGCAGA--CCC-TACA-GAATATTGTTGGA-CT-G--CATGTATCAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GC-C-ATA--A--C-CA-TGC-AT-A--GGCCAGACT-T-TT-AAA---AA-----caattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-T-CTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-ATTT-GCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---ACGTACGG-------TGAC-AAGCTTTT----A-CGTATT--T--AT-AA-A-G-------------GATT-CCTGGAATTTGATGA-A----A-CTGC----T--TATTAT-G--TTAAAAAAAT-A-GAAAAAATA-ATGG----A--TATAGGACAGT---GAAT-CGCATCAACAC----TGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--ATC-TATACAAATTATGT-GGACCT-T--CATGTAT-AT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT------AGTAAT-CACT--GACATCT--TCTT--CGT----TATTGTAT-A--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGTC-AG-AAGACTACA---------A----GC-ATTGA-C---C-CTA-A-CATAGTA-CACAAGT-T--C--TT--ACTG----AAAATA---ATCC-TT----GACTGAGTGG--TGTCATTGGC---------GGG-TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTTTTA-ATATTC-ATC----CACATTCA------------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-T-CTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-ATTT-GCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTA---TATTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-T-CTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAATGT-A------------------------T-T-AC-ATTT-GCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 2222222222 22 111 2222222222222 11 11111 1111111 1111111 33333 111 1111 1111 2222 11 1111 11111111 2222222222222 1111 1111 1 11 111 1 1111 222222222 1111 11 11 111111111 11 111 3333333333 222 1 1 1 111 2222 1 1 1111 111 111 1111 11 22 1 111 22222222222222 222222222222222222222222 111 1111 111 11111 44444444 11 2222 111 1 1111 222222222 111 11 111 55555555555555555555555555555 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 3 2 4 77 1111111111 1 777 8 0 55 4 1 55 1 4 4 66 4 333 66 4444444444444 4 33 4 66 11111 1 1 555 3333333 4 777 8 9999999 4 44 4 4 4 3 00000 666 3 55 4 4 9999 4 55 4 4 4 111 4 1 1 4 55 4444 2 0 4 4 2 0000 6666 5 00 5555 55 77777777 5 5 5 7777777777777 5 0000 5 0000 66 5 66 5 5 1 77 5 33 77 5 77 55 000 0 1 2222 888 0 0 222222222 66 4 2 55 6666 4 00 3 11 5 8888 5 77 0 888 6 8 666666666 8 8 8 8 11 8 8 8 444 0000000000 555 0 0 0 777 1111 3 0 0 4444 999 0 8 8 0 0 111 0 7777 8 0 11 88 11 8 6 8 99 6 6 6 3 111 88888888888888 6 6 6 999999999999999999999999 8888 666 2 4444 111 66666 8 1 77777777 8 1 8 11 8 0 1111 0 111 6 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 222 33 5 33333333333333333333333333333 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . .. .......... . ... . . .. . . .. . . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . .. . . . . ..... ... . .. . . .... . .. . . . ... . . . . .. .... . . . . . .... .... . .. .... .. ........ . . . ............. . .... . .... .. . .. . . . .. . .. .. . .. .. ... . . .... ... . . ......... .. . . .. .... . .. . .. . .... . .. . ... . . ......... . . . . .. . . . ... .......... ... . . . ... .... . . . .... ... . . . . . ... . .... . . .. .. .. . . . .. . . . . ... .............. . . . ........................ .... ... . .... ... ..... . . ........ . . . .. . . .... . ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . ... .. . ............................. . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 0 4 0 99 7777777777 4 111 9 1 44 4 0 44 0 4 4 44 4 999 11 4444444444444 4 33 4 11 11111 9 1 555 0000000 0 777 9 4444444 0 99 0 0 0 6 99999 444 6 00 0 0 1111 0 55 0 0 0 555 0 6 3 0 00 9999 2 1 4 4 5 6666 1111 0 66 6666 11 11111111 7 7 7 5555555555555 0 6666 0 6666 99 0 99 7 0 4 99 0 66 99 0 99 77 000 1 4 1111 888 1 1 000000000 11 4 9 66 2222 4 88 4 44 0 9999 7 99 1 000 7 0 666666666 0 0 0 0 00 0 0 0 000 2222222222 222 0 0 0 555 2222 2 0 0 8888 888 8 0 0 8 8 888 8 0000 0 8 22 88 22 0 0 0 22 7 7 7 3 777 55555555555555 7 7 7 777777777777777777777777 5555 777 2 2222 777 55555 0 0 00000000 0 4 0 00 0 8 2222 8 888 0 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 333 77 7 99999999999999999999999999999 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AA-----AAATTCTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AA-----AAA--CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTA-T-TTTTTCGTGTTTGTGTGTATATC-----TGGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCA-TTCTACTCTGGCGTAGCGC---GACAA-----------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-ATA-A--TT-T-AC-ATTTTGC-GAG----ACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTATTT---AAGGACGG-TG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGTA--GC-TACGGTACGG-ATGAA-AAGGTTTT----A--GTA-C--TTAGT-AA-A-G-------------GA-TTCCTGGAATTTGATTGC----AATCTGC----T--TATTAT-G--TT-AAAAA-T-AG--AAT-T--AT--GGATA--TATAGG-CAGT---GA-T-GTCATCA----ACAT--------GGGGGGGAGGGG------T--C--ACTAGACATG-TG---G--A-CCTACGA---TAGTGT-AGA-CTATAACATGTATCAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTC--TG--AGCCACT-TG-CACGA--AGCCAGACT-T-TTTAAA---AA-----AAATTCTTGCTG-AAAT-ATAG-AAAAT---TAACATAGCA-ATGAC-AAA-ATA---TTTAATTA-TTTA-TA-T-CACTTGGACA--T--TTTTTCTG----T-TATTGT--TA-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GT-CAGCAA---TGCATCTAGAGATAA---GC-AG-GAGC-C---ATACATCG-AG--T-CTTATGTATG-CAA---TATGATGATACAATA---ATCTAT--TTTGACTGAGT--GGTGTCAATGCC-------AGGGG-TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA--GATTT---ATAC----TTAG-A-ATCTTCAT--CATTAATAAC-AT-CTATATATT-T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATTTAC-ATATTC-ATC---------CCAT--CAT-----AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-T-CTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-ATTT-GCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAACGTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-T--T--cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-ATTT-GCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAACGTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAA-TTTATGGAATTTTATGAC----AA-CTGT----T--TATTGT-G--tat
gi|13 : T-GCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttg-------------GA-TTCTTGGAATTTGATGAC----AA-CTGC----T--TATAAT-G--TT-ACAAAAT-AG--AAAAT--TT--GG--A--TATAGGATAGT---GAATCGTTATCA----ACATTGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGCA-G--A-CCTA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-T-CTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAAT-CTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCAT---GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-G--T---T-AA-ATG-------------GA-T--CTGGAATTTGATGAC----A--CTGC----T---ATTAT-G--TT-AAAAA-T-AG--AAAAT--AT--GGATA--TATAG---ATT---GAAT-TGCA-CA----ACACTGGGG---GGGGGG------------T--C--A-TAGAAAT--T-CAG---A-CCTACA-GAATATTGTTGGA-CT-T--CATGTATCAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GT-CAATG--A--C-CT-GG-CAT-A--GGCCAGACT-T-TT-AAA---AA-----AAATTCTTGCCATGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA----TTAATT--TTT-GAA-TCCACTTGGACATC------TTTCG----TGTA-TGTG-TACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GT-CAG-AA---TGCA---------AATTCGC-AT-GA-C-C---TAA-A-TG-A---T-C-T-AGT-TACCAA--ATGCAA----TAAATA---ATC-----TTTGACT-AGT-GGGTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGACTTATATAGTCTATTAG-ACA---TCACA-CAT-----AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATTT-A-ATGTTC-ATC----CACATC-------------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGCAG---A-CCTACAA-AATAT------A-C------ATGAATCAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-ATTT-GCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AG--T-T-T-AGT-CA-CAA--ATATGA----AAAATA-----TG-T--TTTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-T-CTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTATTG--TT-AAAAAAT-AG--AAA-T--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--A-CCTACAAGAATATTGT-GGA-CT-T--CAT--ATCAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GT-CA-TG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AA-----AAA--ATTACCAGAAAT-AT-G-AAAAT---TAACA----ATATGAT-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCTG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-TG-AG--T-C-TAAGT-TA-CAA--TTATGA----AAAAT----ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA--TTA-ATATTC-ATCAG-ACACATCCACTATAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACA-CCTGTAAGAACATTAT-GGT-AT-T--CAT
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----CGTACAGTACGGTATGA--AAGCTTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAA-TTGATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAATAAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACT--GG---GCGGGGGGGGTG------T--CCGA-TA-AAATG-TGCAAG--ACCCTAC-AGAATA-TGT--GA-CT-T--CATGTA-CATCATGCTCAT--AATAAT---TCTTAATTTTCAGT-CAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATT-AAATTTAATTATTACG--CTTGACAC--ATAAT-GAAAAATTAATAACA----ATATGACTAAACATAATTTTTAATTTGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTT-TATTGTGTTA-ACTT-ACTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAGAAA---TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTT-C-TACGT-TA-CAACTGTAAGA----AAGAGAGATATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTAT-GGAG-TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCA--A--TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATTTTA-ATA-CC-ATCAGAAAATACCCAC--CATTCA--ACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-T-CTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-ATTT-GTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-T--TT-AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGCATGCT--TATTAT-A--TT-ACAAAATTAG--AAAAT--TT--TGATT--T-TAG-ACAGT---GAATAGTCATCA----ACATTGGGC---G-----------------T--C--A-TAGAAATGCTGCAGA--C-CCTACA-GAATATTGTTGGA-CT-G--CATGTATCAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GC-C-ATA--A--C-CA-TG-CAT-A--GGCCAGACT-T-TT-AAA---AA-----caattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-T-CTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-ATTT-GCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---ACGTACGG-------TGAC-AAGCTTTT----A-CGTATT--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGA-----AA-CTGC----T--TATTAT-G--TTAAAAAAAT-AGAAAAAATA-AT--GG--A--TATAGGACAGT---GAAT-CGCATCA----ACACTGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--A-TCTATACAAATTATGT-GGACCT-T--CATGTAT-AT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT-----AGTAAT-CACT--GACATCT--TCTT--CG----T-TATTGTA-TA--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGT-CAG-AAGACTACA---------A----GC-ATTGA-C-C---CTA-A-CATAG--TACACAAGT-T--C----TTACTG----AAAATA---ATCC-T--T--GACTGAGT-GG-TGTCATTGGC---------GGG-TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTTTTA-ATATTC-ATC----CACATTCA------------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-T-CTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-ATTT-GCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTA---TATTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-T-CTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAATGT-A------------------------T-T-AC-ATTT-GCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 2222222222 22 111 2222222222222 11 11111 1111111 1111111 33333 111 1111 1111 2222 11 1111 11111111 2222222222222 1111 1111 1 11 111 1 1111 222222222 1111 11 11 111111111 11 111 11111 222 1 1 1 111 2222 1 1 1111 111 111 1111 11 22 1 111 22222222222222 222222222222222222222222 111 1111 111 11111 44444444 11 2222 111 1 1111 222222222 111 11 111 55555555555555555555555555555 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 3 2 4 77 1111111111 1 777 8 0 55 4 1 55 1 4 4 66 4 333 66 4444444444444 4 33 4 66 11111 1 1 555 3333333 4 777 8 9999999 4 44 4 4 4 3 00000 666 3 55 4 4 9999 4 55 4 4 4 111 4 1 1 4 55 4444 2 0 4 4 2 0000 6666 5 00 5555 55 77777777 5 5 5 7777777777777 5 0000 5 0000 66 5 66 5 5 1 77 5 33 77 5 77 55 000 0 1 2222 888 0 0 222222222 66 4 2 55 6666 4 00 3 11 5 8888 5 77 0 888 6 8 666666666 8 8 8 8 11 8 8 8 444 77777 555 0 0 0 777 1111 3 0 0 4444 999 0 8 8 0 0 111 0 7777 8 0 11 88 11 8 6 8 99 6 6 6 3 111 88888888888888 6 6 6 999999999999999999999999 8888 666 2 4444 111 66666 8 1 77777777 8 1 8 11 8 0 1111 0 111 6 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 222 33 5 33333333333333333333333333333 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . .. .......... . ... . . .. . . .. . . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . .. . . . . ..... ... . .. . . .... . .. . . . ... . . . . .. .... . . . . . .... .... . .. .... .. ........ . . . ............. . .... . .... .. . .. . . . .. . .. .. . .. .. ... . . .... ... . . ......... .. . . .. .... . .. . .. . .... . .. . ... . . ......... . . . . .. . . . ... ..... ... . . . ... .... . . . .... ... . . . . . ... . .... . . .. .. .. . . . .. . . . . ... .............. . . . ........................ .... ... . .... ... ..... . . ........ . . . .. . . .... . ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . ... .. . ............................. . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 0 4 0 99 7777777777 4 111 9 1 44 4 0 44 0 4 4 44 4 999 11 4444444444444 4 33 4 11 11111 9 1 555 0000000 0 777 9 4444444 0 99 0 0 0 6 99999 444 6 00 0 0 1111 0 55 0 0 0 555 0 6 3 0 00 9999 2 1 4 4 5 6666 1111 0 66 6666 11 11111111 7 7 7 5555555555555 0 6666 0 6666 99 0 99 7 0 4 99 0 66 99 0 99 77 000 1 4 1111 888 1 1 000000000 11 4 9 66 2222 4 88 4 44 0 9999 7 99 1 000 7 0 666666666 0 0 0 0 00 0 0 0 000 88888 222 0 0 0 555 2222 2 0 0 8888 888 8 0 0 8 8 888 8 0000 0 8 22 88 22 0 0 0 22 7 7 7 3 777 55555555555555 7 7 7 777777777777777777777777 5555 777 2 2222 777 55555 0 0 00000000 0 4 0 00 0 8 2222 8 888 0 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 333 77 7 99999999999999999999999999999 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTA-T-TTTTTCGTGTTTGTGTGTATATC-----TGGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCA-TTCTACTCTGGCGTAGCGC---GACAA-----------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-ATA-A--TT-T-AC-ATTTTGC-GAG----ACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTATTT---AAGGACGG-TG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGTA--GC-TACGGTACGG-ATGAA-AAGGTTTT----A--GTA-C--TTAGT-AA-A-G-------------GA-TTCCTGGAATTTGATTGC----AATCTGC----T--TATTAT-G--TT-AAAAA-T-AG--AAT-T--AT--GGATA--TATAGG-CAGT---GA-T-GTCATCA----ACAT--------GGGGGGGAGGGG------T--C--ACTAGACATG-TG---G--A-CCTACGA---TAGTGT-AGA-CTATAACATGTATCAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTC--TG--AGCCACT-TG-CACGA--AGCCAGACT-T-TTTAAA---AAAAATT---CTTGCTG-AAAT-ATAG-AAAAT---TAACATAGCA-ATGAC-AAA-ATA---TTTAATTA-TTTA-TA-T-CACTTGGACA--T--TTTTTCTG----T-TATTGT--TA-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GT-CAGCAA---TGCATCTAGAGATAA---GC-AG-GAGC-C---ATACATCG-AG--T-CTTATGTATG-CAA---TATGATGATACAATA---ATCTAT--TTTGACTGAGT--GGTGTCAATGCC-------AGGGG-TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA--GATTT---ATAC----TTAG-A-ATCTTCAT--CATTAATAAC-AT-CTATATATT-T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATTTAC-ATATTC-ATC---------CCAT--CAT-----AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-T-CTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-ATTT-GCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAACGTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-T--T--cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-ATTT-GCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAACGTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAA-TTTATGGAATTTTATGAC----AA-CTGT----T--TATTGT-G--tat
gi|13 : T-GCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttg-------------GA-TTCTTGGAATTTGATGAC----AA-CTGC----T--TATAAT-G--TT-ACAAAAT-AG--AAAAT--TT--GG--A--TATAGGATAGT---GAATCGTTATCA----ACATTGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGCA-G--A-CCTA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-T-CTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAAT-CTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCAT---GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-G--T---T-AA-ATG-------------GA-T--CTGGAATTTGATGAC----A--CTGC----T---ATTAT-G--TT-AAAAA-T-AG--AAAAT--AT--GGATA--TATAG---ATT---GAAT-TGCA-CA----ACACTGGGG---GGGGGG------------T--C--A-TAGAAAT--T-CAG---A-CCTACA-GAATATTGTTGGA-CT-T--CATGTATCAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GT-CAATG--A--C-CT-GG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCATGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA----TTAATT--TTT-GAA-TCCACTTGGACATC------TTTCG----TGTA-TGTG-TACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GT-CAG-AA---TGCA---------AATTCGC-AT-GA-C-C---TAA-A-TG-A---T-C-T-AGT-TACCAA--ATGCAA----TAAATA---ATC-----TTTGACT-AGT-GGGTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGACTTATATAGTCTATTAG-ACA---TCACA-CAT-----AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATTT-A-ATGTTC-ATC----CACATC-------------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGCAG---A-CCTACAA-AATAT------A-C------ATGAATCAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-ATTT-GCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AG--T-T-T-AGT-CA-CAA--ATATGA----AAAATA-----TG-T--TTTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-T-CTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTATTG--TT-AAAAAAT-AG--AAA-T--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--A-CCTACAAGAATATTGT-GGA-CT-T--CAT--ATCAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GT-CA-TG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAA-----ATTACCAGAAAT-AT-G-AAAAT---TAACA----ATATGAT-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCTG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-TG-AG--T-C-TAAGT-TA-CAA--TTATGA----AAAAT----ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA--TTA-ATATTC-ATCAG-ACACATCCACTATAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACA-CCTGTAAGAACATTAT-GGT-AT-T--CAT
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----CGTACAGTACGGTATGA--AAGCTTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAA-TTGATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAATAAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACT--GG---GCGGGGGGGGTG------T--CCGA-TA-AAATG-TGCAAG--ACCCTAC-AGAATA-TGT--GA-CT-T--CATGTA-CATCATGCTCAT--AATAAT---TCTTAATTTTCAGT-CAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATT-AAATTTAATTATTACGCTTGACAC--ATAAT-GAAAAATTAATAACA----ATATGACTAAACATAATTTTTAATTTGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTT-TATTGTGTTA-ACTT-ACTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAGAAA---TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTT-C-TACGT-TA-CAACTGTAAGA----AAGAGAGATATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTAT-GGAG-TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCA--A--TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATTTTA-ATA-CC-ATCAGAAAATACCCAC--CATTCA--ACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-T-CTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-ATTT-GTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-T--TT-AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGCATGCT--TATTAT-A--TT-ACAAAATTAG--AAAAT--TT--TGATT--T-TAG-ACAGT---GAATAGTCATCA----ACATTGGGC---G-----------------T--C--A-TAGAAATGCTGCAGA--C-CCTACA-GAATATTGTTGGA-CT-G--CATGTATCAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GC-C-ATA--A--C-CA-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAcaattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-T-CTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-ATTT-GCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---ACGTACGG-------TGAC-AAGCTTTT----A-CGTATT--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGA-----AA-CTGC----T--TATTAT-G--TTAAAAAAAT-AGAAAAAATA-AT--GG--A--TATAGGACAGT---GAAT-CGCATCA----ACACTGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--A-TCTATACAAATTATGT-GGACCT-T--CATGTAT-AT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT-----AGTAAT-CACT--GACATCT--TCTT--CG----T-TATTGTA-TA--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGT-CAG-AAGACTACA---------A----GC-ATTGA-C-C---CTA-A-CATAG--TACACAAGT-T--C----TTACTG----AAAATA---ATCC-T--T--GACTGAGT-GG-TGTCATTGGC---------GGG-TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTTTTA-ATATTC-ATC----CACATTCA------------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-T-CTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-ATTT-GCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTA---TATTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-T-CTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAATGT-A------------------------T-T-AC-ATTT-GCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 2222222222 22 111 2222222222222 11 11111 1111111 1111111 33333 111 1111 1111 2222 11 1111 11111111 2222222222222 1111 1111 1 11 111 1 1111 222222222 1111 11 11 111111111 11 111 11111 222 1 1 1 111 2222 1 1 1111 111 111 1111 11 22 1 111 22222222222222 222222222222222222222222 111 1111 111 11111 44444444 11 2222 111 1 1111 222222222 111 11 111 55555555555555555555555555555 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 3 2 4 77 1111111111 1 777 8 0 55 4 1 55 1 4 4 66 4 333 66 4444444444444 4 33 4 66 11111 1 1 555 3333333 4 777 8 9999999 4 44 4 4 4 3 00000 666 3 55 4 4 9999 4 55 4 4 4 111 4 1 1 4 55 4444 2 0 4 4 2 0000 6666 5 00 5555 55 77777777 5 5 5 7777777777777 5 0000 5 0000 66 5 66 5 5 1 77 5 33 77 5 77 55 000 0 1 2222 888 0 0 222222222 66 4 2 55 6666 4 00 3 11 5 8888 5 77 0 888 6 8 666666666 8 8 8 8 11 8 8 8 444 77777 555 0 0 0 777 1111 3 0 0 4444 999 0 8 8 0 0 111 0 7777 8 0 11 88 11 8 6 8 99 6 6 6 3 111 88888888888888 6 6 6 999999999999999999999999 8888 666 2 4444 111 66666 8 1 77777777 8 1 8 11 8 0 1111 0 111 6 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 222 33 5 33333333333333333333333333333 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . .. .......... . ... . . .. . . .. . . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . .. . . . . ..... ... . .. . . .... . .. . . . ... . . . . .. .... . . . . . .... .... . .. .... .. ........ . . . ............. . .... . .... .. . .. . . . .. . .. .. . .. .. ... . . .... ... . . ......... .. . . .. .... . .. . .. . .... . .. . ... . . ......... . . . . .. . . . ... ..... ... . . . ... .... . . . .... ... . . . . . ... . .... . . .. .. .. . . . .. . . . . ... .............. . . . ........................ .... ... . .... ... ..... . . ........ . . . .. . . .... . ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . ... .. . ............................. . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 0 4 0 99 7777777777 4 111 9 1 44 4 0 44 0 4 4 44 4 999 11 4444444444444 4 33 4 11 11111 9 1 555 0000000 0 777 9 4444444 0 99 0 0 0 6 99999 444 6 00 0 0 1111 0 55 0 0 0 555 0 6 3 0 00 9999 2 1 4 4 5 6666 1111 0 66 6666 11 11111111 7 7 7 5555555555555 0 6666 0 6666 99 0 99 7 0 4 99 0 66 99 0 99 77 000 1 4 1111 888 1 1 000000000 11 4 9 66 2222 4 88 4 44 0 9999 7 99 1 000 7 0 666666666 0 0 0 0 00 0 0 0 000 88888 222 0 0 0 555 2222 2 0 0 8888 888 8 0 0 8 8 888 8 0000 0 8 22 88 22 0 0 0 22 7 7 7 3 777 55555555555555 7 7 7 777777777777777777777777 5555 777 2 2222 777 55555 0 0 00000000 0 4 0 00 0 8 2222 8 888 0 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 333 77 7 99999999999999999999999999999 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACT-TATTTAGATTAAA-G--AAA--A-------TC-TAACTA-T-TTTTTCGTGTTTGTGTGTATATC-----TGGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCA-TTCTACTCTGGCGTAGCGC---GACAA-----------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAATA-TCAGAATCAAAACGCTA-TTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-ATA-A--TT-T-AC-ATTTTGC-GAG----ACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTATTT---AAGGACGG-TG-GTAG-ATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGTA--GC-TACGGTACGG-ATGAA-AAGGTTTT----A--GTA-C--TTAGT-AA-A-G-------------GA-TTCCTGGAATTTGATTGC----AATCTGC----T--TATTAT-G--TT-AAAAA-T-AG--AAT-T--AT--GGATA--TATAGG-CAGT---GA-T-GTCATCA----ACAT--------GGGGGGGAGGGG------T--C--ACTAGACATG-TG---G--A-CCTACGA---TAGTGT-AGA-CTATAACATGTATCAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTC--TG--AGCCACT-TG-CACGA--AGCCAGACT-T-TTTAAA---AAAAATT---CTTGCTG-AAAT-ATAG-AAAAT---TAACATAGCA-ATGAC-AAA-ATA---TTTAATTA-TTTA-TA-T-CACTTGGACA--T--TTTTTCTG----T-TATTGT--TA-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GT-CAGCAA---TGCATCTAGAGATAA---GC-AG-GAGC-C---ATACATCG-AG--T-CTTATGTATG-CAA---TATGATGATACAATA---ATCTAT--TTTGACTGAGT--GGTGTCAATGCC-------AGGGG-TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA--GATTT---ATAC----TTAG-A-ATCTTCAT--CATTAATAAC-AT-CTATATATT-T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATTTAC-ATATTC-ATC---------CCAT--CAT-----AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-T-CTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCACGG-ATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-ATTT-GCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAACGTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-T--T--cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCACAG-ATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-ATTT-GCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAACGTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-A--T--ATCAACA-GCTCTATTCGAATTAA-TTTATGGAATTTTATGAC----AA-CTGT----T--TATTGT-G--tat
gi|13 : T-GCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttg-------------GA-TTCTTGGAATTTGATGAC----AA-CTGC----T--TATAAT-G--TT-ACAAAAT-AG--AAAAT--TT--GG--A--TATAGGATAGT---GAATCGTTATCA----ACATTGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGCA-G--A-CCTA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-T-CTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACT-TATTGTGATTAAAAG--AAAC-A-------TCATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAAT-CTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCACGG-ATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCAT---GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-G--T---T-AA-ATG-------------GA-T--CTGGAATTTGATGAC----A--CTGC----T---ATTAT-G--TT-AAAAA-T-AG--AAAAT--AT--GGATA--TATAG---ATT---GAAT-TGCA-CA----ACACTGGGG---GGGGGG------------T--C--A-TAGAAAT--T-CAG---A-CCTACA-GAATATTGTTGGA-CT-T--CATGTATCAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GT-CAATG--A--C-CT-GG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCATGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA----TTAATT--TTT-GAA-TCCACTTGGACATC------TTTCG----TGTA-TGTG-TACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GT-CAG-AA---TGCA---------AATTCGC-AT-GA-C-C---TAA-A-TG-A---T-C-T-AGT-TACCAA--ATGCAA----TAAATA---ATC-----TTTGACT-AGT-GGGTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGACTTATATAGTCTATTAG-ACA---TCACA-CAT-----AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACT-TATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACT-TA
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATTT-A-ATGTTC-ATC----CACATC-------------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGCAG---A-CCTACAA-AATAT------A-C------ATGAATCAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-ATTT-GCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AG--T-T-T-AGT-CA-CAA--ATATGA----AAAATA-----TG-T--TTTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAAC-A-------TCATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-T-CTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTATTG--TT-AAAAAAT-AG--AAA-T--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGCAAA--A-CCTACAAGAATATTGT-GGA-CT-T--CAT--ATCAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GT-CA-TG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAA-----ATTACCAGAAAT-AT-G-AAAAT---TAACA----ATATGAT-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCTG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-TG-AG--T-C-TAAGT-TA-CAA--TTATGA----AAAAT----ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA--TTA-ATATTC-ATCAG-ACACATCCACTATAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATT-TATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACA-CCTGTAAGAACATTAT-GGT-AT-T--CAT
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----CGTACAGTACGGTATGA--AAGCTTTT----ACAGTA-CCTT--AT-AA-A-G-------------GATTTCCTGGAA-TTGATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAATAAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACT--GG---GCGGGGGGGGTG------T--CCGA-TA-AAATG-TGCAAG--ACCCTAC-AGAATA-TGT--GA-CT-T--CATGTA-CATCATGCTCAT--AATAAT---TCTTAATTTTCAGT-CAATATTA--C-CTATGCCAT-ATTGGTCAGACTATATT-AAATTTAATTATTACGCTTGACAC--ATAAT-GAAAAATTAATAACA----ATATGACTAAACATAATTTTTAATTTGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTT-TATTGTGTTA-ACTT-ACTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAGAAA---TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTT-C-TACGT-TA-CAACTGTAAGA----AAGAGAGATATCT-TCCCTTGACTGAGTCGTGCTTCAATGCCTCATTAT-GGAG-TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCA--A--TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATTTTA-ATA-CC-ATCAGAAAATACCCAC--CATTCA--ACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAG--AAAC-AATCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-T-CTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-ATTT-GTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-T--TT-AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGCATGCT--TATTAT-A--TT-ACAAAATTAG--AAAAT--TT--TGATT--T-TAG-ACAGT---GAATAGTCATCA----ACATTGGGC---G-----------------T--C--A-TAGAAATGCTGCAGA--C-CCTACA-GAATATTGTTGGA-CT-G--CATGTATCAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GC-C-ATA--A--C-CA-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAcaattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACT-TATTTGGATTAAAAG--AAACTA-------TTCTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCA-TCTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-T-CTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCATGG-ATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-ATTT-GCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---ACGTACGG-------TGAC-AAGCTTTT----A-CGTATT--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGA-----AA-CTGC----T--TATTAT-G--TTAAAAAAAT-AGAAAAAATA-AT--GG--A--TATAGGACAGT---GAAT-CGCATCA----ACACTGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GCAGA--A-TCTATACAAATTATGT-GGACCT-T--CATGTAT-AT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT-----AGTAAT-CACT--GACATCT--TCTT--CG----T-TATTGTA-TA--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGT-CAG-AAGACTACA---------A----GC-ATTGA-C-C---CTA-A-CATAG--TACACAAGT-T--C----TTACTG----AAAATA---ATCC-T--T--GACTGAGT-GG-TGTCATTGGC---------GGG-TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTTTTA-ATATTC-ATC----CACATTCA------------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAA-A-------TCATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-T-CTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCACGG-ATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-ATTT-GCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACT-TATTTGGATTAAAAG--ACACAA-------TCATAACTA---TATTTCGTGTTTTTGTAT-CATCA-TCTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-T-CTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCACGG-ATAAATGT-A------------------------T-T-AC-ATTT-GCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
blockSeqs : T . AA . C G . G G A G AA CAATCTGAA A AT G TT T A TT C A . AA . AAA CA AACACCCAAAAAA T GG . GT AAATA A T ACT CGGAGAA . TGT T AGTAAT T CA C A C . GAGAG GTC A CA G A AAAT G GA A A A TTA G G A A AA CCCA G C C G CGGC ACAA T CT TTAA CA CCTTA C C T CTCTATTCGAATT T ACAA . ATGC CA T AA A A A AA A CA GA A CT GA CGC C ACAC GGA AGGGGTT CG . G GC AGAC C AG T TG C T C . TAA A . AATATTA . A C . TT A A . TTT TTACG ATG A . A TAA . T T C ATTT TGT A C TGG TCGT G GT CA AA A T . TC C A C A GAC AATTC G T . GCACATTAAATGGTTTCTA TAC CTG C . GAT TTCC C C TCATTAT T T . CA . TAG AGA G G G T ATGA . A TA . A A T T TGTAAACGT TTT T A CC CC AA A T TAT TT T AGAAAATACCCACCATTCAACAAT T A AA GACT C A A A CTCAGAGC A
blockSeqs : . . . . T . . . G T . . CTA A TA . T . A T C . . AA . CG . . . TC . . . A T TT . . AT T TT . A . . . . GAG . . . . . C . . . . . A . G A . . CCCA A . . G . ACAA . C T A TTTA . . . . . . . . . . . . A T . A A . A . GA . A . . GGGT . . G G AA . AG T TG . T . . A . . AATGA . . . . . . . . . TT AGA . . . . . T . . T T . . T . . G A A . T . . . . . . . AA . . . CCTAACATAGTACACA CA A T . . GT . A GCAATG . A . . . TGA A . . . A T . A T . . . . . TTA A . . C . AA . A AC GT . AGACACATCCACTATATACAT . . A . . A T G CTGCTC .
blockSeqs : . . . . C . . . A T . . CAA A T . T . A A G . . TT . . . . . G . . . A G GT . . GG T AT . A . . . . GG . . . . . C . . . . . A . G A . . CCCA A . . G . ACAA . C . A TTTA . . . . . . . . . . . . A . . A . . A . GA . . . . TGC . . G G AG . AG T G . T . . A . . ATGA . . . . . . . . . . AC . . . . . T . . T T . . T . . G A A . T . . . . . . . AA . . . CTTAATGAGTCTA TA A T . . TT . A CAATG . A . . . TA A . . . C C . T T . . . . . TTA A . . . . AA . T TA TT . AGACATCACACATACATG . . A . . A . A CTGC .
blockSeqs : . . . . A . . . G A . . CA C T . T . T C G . . AA . . . . . T . . . A A CT . . AT C TT . T . . . . G . . . . . T . . . . . T . G A . . TTCA A . . G . A . A . A ATA . . . . . . . . . . . . A . . A . . A . GA . . . . T . . G G GA . CA T G . T . . A . . ATAA . . . . . . . . . . . . . . . . A . A . . . . . . . . . AA . . . CTAAATGATCT TA T A . . CT . T . . A . . . A . . . . . C . . . . . . . . A C . . . . AA . T TA TT . CCATCATACAT . . A . . T . A TA .
blockSeqs : . . . . T . . . A T . . CA A T . T . A T T . . TA . . . . . G . . . A T CT . . AT A T . A . . . . G . . . . . T . . . . . T . G A . . ACC A . . T . A . A . A CTA . . . . . . . . . . . . A . . A . . . . A . . . . G . . G G GA . G T G . G . . G . . . . . . . A . . . CGAGTTT T T C . . . . . . . A . T TA TT . CACATTCA . . A . . A . G T
blockSeqs : . . . . C . . . A A . . AA A T . T . G A A . . TT . . . . . T . . . A C GT . . GT C T . A . . . . G . . . . . T . . . . . T . G G . . CT A . . . . A . C . A GT . . . . . . . . . . . . . . . . . . . . . . . . . C . . A G G . A A . . T . . A . . A . . A C . CACATC . . A . . A . .
blockSeqs : . . . . C . . . G T . . . T . A A C . . CT . . . . . T . . . A T GT . . AT T T . A . . . . C . . . . . T . . . . . T . A G . . CC . . . . . . . . . C . . . . . . . . . T . . . . G . G . . . . . . . . .
blockSeqs : . . . . C . . . A T . . T . . A C . . T . . . . . . . . . . T C . . A A T . A . . . . G . . . . . C . . . . . T . . . . . A . . . T . . . . G .
blockSeqs : . . . . T . . . A . . C . . . . . . . . . . . G . . . . . . . . . . . . . . . . . C .
blockSeqs : . . T . . . . .
blockSeqCons : ** CAA******* T* T****** A* T** A*** A* NTTA**** GA GA** AG T*** ** A** AATNA**** T** G* AA************ TA** N** **** NT*** CAAT**** AA TA* TT AGACACATCCACAATACAT********** CTGC******
originalCons : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAAC-A-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCATTCTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTACAACGTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-C--T--AT-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGG--A-CCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GT-CAATG--A--C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATCT-T--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAG-ACACATCCAC--CAT-----AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
finalCons : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACT-TATTTGGATTAAAAG--AAACAA-------TCATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-T-CTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCACGG-ATAAATGT-GTTTCGTTAAT------ATA-AA-TT-T-AC-ATTT-GCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGTA---CGTACGGTACGG-ATGAC-AAGCTTTT----AA-GTANTTA----T-AA-A-G-------------GA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGCAGA--A-CCTACAAGAATATTGT-GGA-CTT---CATGTATCAT-ATGCTCAT--AATAATGGCTCTA--TTTTC-GT-CAATNA----C-CT-TG-CAT-A--GGCCAGACT-T-TT-AAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACA----ATATGAC-AAA-ATA---TTTAATTT--TTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCAAA------------GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGTTA--CAAN--TACGA----AAAATA---ATCNT---TTTGACTGAGT-GGGTGTCAATGCCCAAT----GGGG-TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATTTTA-ATATTC-ATCAGACACATCCACAATACAT----------GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACTGC------TAGATCCCG-TGTA
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG
Alignments
lowQualScore : 11 1111111 111 2222222222222 11 11111 1111111 1111111 33333 1111 1111 22222222 11 111111 22222222222 11111 1111 1111 1 11 111 1 1111 222222222 11 111 11 2222222 11 111 11111 222 1 1 1 111 2222 1 1 1111 111 111 1111 11 22 1 111 22222222222222 222222222222222222222222 111 1111 111 11111 2222222 111 11 2222 111 1 1111 222222222 111 11 1111111111 777777777777777777777777777 1111 1 2222222222
lowQualScore : 4 55 55 4 1 4 4 4 3 2 4 0 00 7777777 777 4 5 4 4 1 55 1 8 66 4 333 66 4444444444444 4 33 4 66 11111 0 1 555 3333333 4 777 8 9999999 4 4 4 4 4 4 00000 666 3 55 4 4 9999 4 55 4 4 4 666 4 1 1 4 55 4444 2 0 4 4 2 0000 99999999 5 00 777777 66 33333333333 00000 5 0000 5 0000 66 5 66 5 1 77 1 33 77 5 77 55 000 1 2222 888 0 0 222222222 66 4 2 55 1 8 11 333 3 11 5 8888 5 77 0 888 6 9999999 1 8 8 8 11 8 8 8 444 77777 555 0 0 0 777 3 1111 0 0 4444 999 0 8 8 0 0 111 0 7777 8 0 11 88 11 8 6 8 99 6 6 6 3 111 88888888888888 6 6 6 999999999999999999999999 8888 666 2 4444 111 88888 8 1 5 9999999 111 1 8 11 8 0 1111 0 111 6 8 8 0 3 6666 0 8 6 88 8 8 8 8 8 000000000 222 6 6 33 77 22 0 5 1 2222222222 1 5 000000000000000000000000000 5 5 55 0000 5 1 1 5 7777777777 8
lowQualScore : . .. .. . . . . . . . . . .. ....... ... . . . . . .. . . .. . ... .. ............. . .. . .. ..... . . ... ....... . ... . ....... . . . . . . ..... ... . .. . . .... . .. . . . ... . . . . .. .... . . . . . .... ........ . .. ...... .. ........... ..... . .... . .... .. . .. . . .. . .. .. . .. .. ... . .... ... . . ......... .. . . .. . . .. ... . .. . .... . .. . ... . ....... . . . . .. . . . ... ..... ... . . . ... . .... . . .... ... . . . . . ... . .... . . .. .. .. . . . .. . . . . ... .............. . . . ........................ .... ... . .... ... ..... . . . ....... ... . . .. . . .... . ... . . . . . .... . . . .. . . . . . ......... ... . . .. .. .. . . . .......... . . ........................... . . .. .... . . . . .......... .
lowQualScore : 0 55 55 0 2 0 0 0 0 4 0 7 77 9999999 111 4 7 4 4 0 44 0 9 44 4 999 11 4444444444444 4 33 4 11 11111 8 1 555 0000000 0 777 9 4444444 0 0 0 0 0 0 99999 444 6 00 0 0 1111 0 55 0 0 0 666 0 6 3 0 00 9999 2 1 4 4 5 6666 00000000 0 66 888888 00 88888888888 99999 0 6666 0 6666 99 0 99 7 4 99 7 66 99 0 99 77 000 4 1111 888 1 1 000000000 11 4 9 66 1 9 77 999 4 44 0 9999 7 99 1 000 7 6666666 0 0 0 0 00 0 0 0 000 88888 222 0 0 0 555 2 2222 0 0 8888 888 8 0 0 8 8 888 8 0000 0 8 22 88 22 0 0 0 22 7 7 7 3 777 55555555555555 7 7 7 777777777777777777777777 5555 777 2 2222 777 33333 0 0 0 0000000 888 4 0 00 0 8 2222 8 888 0 0 0 8 8 0000 8 0 0 88 0 0 0 0 0 888888888 000 7 7 66 99 99 1 7 7 9999999999 4 7 666666666666666666666666666 0 0 11 6666 0 7 4 7 0000000000 0
consensus : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACTT-ATTTGGATTAAAAGAAACAA-TC------ATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-TCTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCAC-GGATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-A-TTTGCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGT---AC---GTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-CT-----------TA-T---AAAGGA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGC-AGA-ACCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GTC---A--ATNACCT-TG-CAT-A--GGCCAGAC-T-T-TTAAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACAAT----ATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATC-NT--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGG--TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATT----TT--A-ATATTC-ATCAG-ACACATCCAC-A-AT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
Reference ( family-2788 ) : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAANTCACTT-ATTTGGATTAAAAGAAACAA-TC------ATAACTA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACATTTAAGATGTCC-NGGTCNCCA-TCTACTCCTGAGTAG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCAC-GGATAAATGT-GTTTCGTTAA-----T-ATA-A-ATT-T-AC-A-TTTGCAGAG---GATT---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGT---AC---GTACGGTACGG-ATGAC-AAGCTTTT----A-AGTA-NT-----------TA-T---AAAGGA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTAT-G--TT-AAAAAAT-AG--AAAAT--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGG------T--C--A-TAGAAATG-TGC-AGA-ACCTACAAGAATATTGT-GGA-CT-T--CATGTATCAT-ATGCTCAT--AATAATGGCTCT--ATTTTC-GTC---A--ATNACCT-TG-CAT-A--GGCCAGAC-T-T-TTAAA---AAAAATT---CTTGCCGCGAAT-AT-G-AAAAT---TAACAAT----ATGAC-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCCG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-CG-AG--T-C-TAAGT-TA-CAA--NTACGA----AAAATA---ATC-NT--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGG--TTTCAGT-C--A-TTTAAGAAT-TAAGGGCAAGA--TTTTCT-ATA-TG-ACAGAATNTTAT-T--ATGGC-TACATT-A-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAATT----TT--A-ATATTC-ATCAG-ACACATCCAC-A-AT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TATC-AAATAGCTACT----G--CTAGATCCCG-TGTA
gi|1 : GCTAC-ACAAAG--TCTCGCGCGACGATCA-TTCGTGTGATGGAT--CTGGAGACAAGGGAGCCTTTT-TTCAG-ATAG-TA-TAGACTATGAAAGCACTT-ATTTAGATTAAA-GAAA--A-TC-------TAACTA-T-TTTTTCGTGTTTGTGTGT--AT-AT-CT-GGTTTA-CAGTGAACATTTAAGATGTCC-TGGTCAGCATTCTACTCTGGCGTAGCGC---G--ACA--A-------------CGAG-GT-AACTCAATGCAG--GTA-T-----AATGTAAAT-ATCAGAATCAAAACGCT-ATTTACCC-TTTT-------TCTTCATTTCACGGGATAAAT-T-GTTT-GTTAAG----T-AT--A-ATT-T-AC-ATTTTGC-GA----GACT---TG-GT--GAG-TG-AGAA---TG-AGAG--A---TA-TA----CCTA-TTT--AAGGACGG-TG-GTA-GATAAAGGTACC-CCCCC--CCAACACACCACCACT-TACCA-G-AGAATG----CGGAT-TGATGT---AG---CTACGGTACGG-ATGAA-AAGGTTTT------AGTA-CT-----------TAGT---AAAGGA-TTCCTGGAATTTGATTGC----AATCTGC----T--TATTAT-G--TT--AAAAAT-AG---AATT--AT--GGATA--TATAGG-CAGT---G-AT-GTCATCA----ACAT--------GGGGGGGAGGGG------T--C--ACTAGACATG-T----GG-ACCTAC---GATAGTGT-AGA-CTATAACATGTATCAT-ATGCTCATTGAATCATGGCACT---CTTTC-GTTCTGA--GCCA-CT-TG-CACGA--AGCCAGACTT-T-TTAAA---AAAAATT---CTTGCTG-AAAT-ATAG-AAAAT---TAAC-ATAGCAATGAC-AAA-ATA---TTTAATTA-TTTA-TA-T-CACTTGGACA--T--TTTTTCTG----T-TATTGT--TA-ACTT-ACTT-CATAAACTAGTTACTTGCATTTT----CA-T-GT-CAGCAA---TGCATCTAGAGATAA---GC-AG-GAGC-C---ATACATCG-AG--T-CTTATGTATG-CAA---TATGATGATACAATA---ATCTAT--TTTGACTGAGT--GGTGTCAATG-C-CA----GGGG--TTTATGTCC--ATTTTAAGAATGTA--GGCAAGA--TTATCTAATA-TA-ACGACATATTAA-T--TTCGCATACATT-ATATT-A-C-ATAA-TAGTA-TTTTT-TT-----ACTATA--C-CCT-TC--A--T---ATT---TTTGA-GATTTATACTTAGA-ATCTTC-AT-------CAT---T-A-ATA--AC-AT-CTATATATT-T-ATCAAT-CAAAAAG----A-T-------TATCCAAT----G--CTAAATCCCA-TG
gi|10 : a-CCT-TTCCA--TGAAGTTAA-TTTGATGAATT----TA--C-ATATTC-ATC---------CCAT-C-AT---AC-AT-GTATTTAGATT-AACAAT-AAAACAG----A-TATC-CA-----CACTCAGAG--CTAGATCCCctaacaaatccttttttccagattttgaagtgatgtctttcatttaaaggttcgctgatcatcaacattcgaacttgaatcataattcaggagtcttactctagactattgttgatataagaaaatatgtttttgaatttttaaaattgaaggaatacagggggtatttattcttatattgatatataatatttatacaaattattcatgggttattctactataatgcaatgatatttccttgccacaat
gi|11 : TAACTA-T-TTTTTCCTGTTTGTGTGT-CATGAT-CTTGGTTTA-CGGCGAACAATTAAGATGTCC-TGGTCCCCA-TCTACTCTTGAGAAG-CC---GAAAAACAA-------------CCAG-GGGAAA-CAATGCAG--GTACT-----AATGTAAACAATCAGTATCAAAACGCTAATTTACGC-C---------------ATTTCAC-GGATAAATGC-ATTTTGTTAT-----TTATA-A-ATT-T-AC-A-TTTGCAGAG----ATG---TG-GT--GAG-TG-AAAA---CG-ATAG--AA-GCA-TAGTT-CCTATAT---AAGGACGG-TGTGAAGGATAAAGATATC-CCCCC-------AC-----------ACGA-A-AGAATGCGGCCGGATCTGATGTACAAC---GTACGGTACGG-GTTAC-AAGCTTTT----A-AGTA-TT-----------TA-T---cactgtaaaatatcgtctttcttttccctccagattttgactgagtgtcttatttaaaggttcttgatccatcaaacttgtatcagaattcagagatcttctagactatatttgctttgataaatataaaaaatatgtttaaaattgaaaggaatacagtttgattattcttcatactagatcataactattctatacaattttcttcagtttcacacttacatgatgcaacgaaatattttccttgcaaac
gi|12 : AATCGGTATCAAAACGCTAATTTACACACTTTCGGAGAATCTGTATTTCAC-AGATAAATAT---TTTGTTAAAGTAAT-ATA-T-ATT-T-AC-A-TTTGCAGAG----ATC---TG-GC--GAG-TG-AAAA---CG-TCAG--AA-GCA-TAGCT-CTTATTTA--AAGGACAG-TATGAAGGATAAAGAT-CC-CCTCC--CCCT----CCACCATTATAC-----------------GATCTGACATACAAC---GTACGGTACGG-ATGAC-AAGCTTAT----A-AATA-ATATCAACAGCTCTA-TTCGAATTAA-TTTATGGAATTTTATGAC----AA-CTGT----T--TATTGT-G--
gi|13 : TGCAGAGAGAGATTGTCTGAGTCAGAG-TG-AAAAAAATG-ATAAGAAA-GCA-TAGTT-TCTATTCTTAAAGGACGG-TGTGAAGGATAAAGGTATC-CCCCCAACCACC-CGCCAC
gi|17 : ttagcctttacacttttatcactttacgagatatattatgtagtaattacattatttctcactcaaaagtgtgagctctacataacatcttgGA-TTCTTGGAATTTGATGAC----AA-CTGC----T--TATAAT-G--TT-ACAAAAT-AG--AAAAT--TT--GG--A--TATAGGATAGT---GAATCGTTATCA----ACATTGGGGGGAGGGGGGAGGGGG------TGCC--A-TAGAAATG-TGC-AG--ACCTA
gi|19 : TTTCGTGTTAGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCCCCA-TCTACCCCTGAGAAG-GC---GAAAAA--A-------------CGAA-AG-AAA-CAATGCAG--GTACT-----AATGTAAACA
gi|2 : GCTAC-ACA--G--TCCCGCGCGACC-TCACTTCCG-TGATGCAC--CTGGAGACAAGGACGCCTTTCGT-CA-CATAGGTAGTAGACTATGATAAGACTT-ATTGTGATTAAAAGAAACA--TC------ATAACTAAT-TTTTTCGTGTGTCTGTGTGCAT-AT-CTTG--TTA-CAGGGAACATTTAAGATGTCT-CTGTCGCCAATCTACTCCTGAGTTA-GC---GCAAAC--A-------------CGAGTGTCAAA-CAATGCAG--GT-CT-----AATGTAA-CA-TCAGGATCAAAAC-CTAATTTACGC-TTTT-------TCTTCATTTCAC-GGATAAATGT-GGTTTATTAAA----T-ATA-A-TTTCT-ACCA-T--GCAGCG----ACT---TG-GT--GAGGTG-AAAA---TGGATAG--AAAGCAATAGTAACCTATTTA--AGGAACGGGTGTGT-GGATAAAGA---C-CCCCC--CCCCCACACCACCACCATACAA-G-A--ATG----CGG--CTGATGT---A----GTACGGTACGG-ATGAA-AAGCTTTTT---A-AATA-GT-----------TA-----AATGGA-T--CTGGAATTTGATGAC----A--CTGC----T---ATTAT-G--TT-AAAAA-T-AG--AAAAT--AT--GGATA--TATAG---ATT---GAAT-TGCA-CA----ACACTGGGG---GGGGGG------------T--C--A-TAGAAAT--T-C-AGA--CCTACA-GAATATTGTTGGA-CT-T--CATGTATCAT-A-GCTCAT--A-TA-TGGCT----ATTTTC-GTC---A--ATGACCT-GG-CAT-A--GGCCAGAC-T-T-TTAAA---AAAAATT---CTTGCCATGAAT-AT-G-AAAAT---TAACAAT----ATGAC-AAA-ATA----TTAATT--TTT-GAA-TCCACTTGGACATC------TTTCG----TGTA-TGTG-TACACTTA--CT-CAATAACTAG-TACTTGCA-TTTT--CCA-T-GT-CAG-AA---TGCA---------AATTCGC-AT-GA-C-C---TAA-A-TG-A---T-C-T-AGT-TACCAA--ATGCAA----TAAATA---ATC-----TTTGACT-AGT-GGGTGTCACTGCCGCA--ATGGGG---TTCTGT-C--A-TT--AGAAT-T-AGGGCAAG----TTTCT-ATAGTG-ACAGA---TTAT-T--A-GGC-T-CATT-A-ATTCA-CAATAC-TAGTATTTTTT-TA-----ACTATA--C-CTTATC--A--TG-AGTAGA-TTTGATGAGAC----TT--ATATAGTCTATTAG-ACA---TCAC-ACAT---AC-ATGGTATTTAGA-TAATCAAT--AAAC-G----A-TATC-AAATAGCTAT-----------GATCCTG-TG
gi|21 : taagAGA-T-ATCAAT-AAAACAG----A-TATC-AAGTAGCTA-T----A---TAGATCCCA-TGTacaaactccttttttctccagatttgaatgatgtctttaatttaaacggttcttgattccatcaaacttcaaattgatcaaattcaagatctactctgaagacatttgttgataaaaaaaatatgttgaatttattaaattgaaggaatacagggatatcttcaataatataagaatacaatttctcgttctccttacataagcataatatttccttgcacacaat
gi|22 : GCTAC-ACA--G--TCTCGCGCGACC-TCATTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAATTCACTT-ATCTAGATTgcaaaactccttctttttctatccagattttgtatgatgtctttatttaaaggttcttgatcc
gi|23 : taggGCTAC-ACG--G--TCTCGCGCGATC-TCGCTTCCGGTGGAGAATTTCCGGAGACCAGGACACATTTC-T-CAGCATAC-CAATAGACTATGGATCTACTT-A
gi|24 : tagg--A--TGAAGCTAAATTTGATGAATT----T---A-ATGTTC-ATC----CACATC-----------------ATATCTAGA-T-ATCAAT-AAAGCAG----A-Tcat
gi|25 : ttccGGGGGGG------G--C--A-TAGAAATG-TGC-AGA--CCTACAA-AATAT------A-C------ATGAATCAT-ATGCTCAT--AATAAGGGCTCT--ATTTTC-cccatttacaaaatctctctctctctct
gi|27 : ATTTATAC-GTTT-------TCTTCATTTCAC-GGATAAATGT-ATTTCGGTAA-----T-ACA-A-ATG-T-AC-A-TTTGCAGA----CATT---TG-GT--tttcc
gi|29 : TTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-----------CG-AG--T-T-T-AGT-CA-CAA--ATATGA----AAAATA-----T-GT--TTTGACTG
gi|3 : GCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGATGGAATCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-TAGTAGACTATGAAATCACTT-ATTTGGATTAAAAGAAACA--TC------ATGACTA-TATTTTTCGTGTTTGTGTGT-CATTATTCTTGGGTTATCGGTGAACATTTAGATTGTCC-TGGTCGCCA-TCTACTCCTGAGT-G-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAG--GTACT-----AATGTAAACAATCAGAATCAAAACGCTAATTTACGC-CTTT-------TCTTCATTTCAC-GGATAAATGTTGTGTAGTTAA-----T-ATA-A-ATT-T-AC-A-TTTGTAGAG---GACT---TG-GT--GAG-TG-AAAA---TG-ATAG--AA-GCA-TAGTA-C--ATTTT--AAGGACGG-TGTGTAGGATAAAGGTACC-CCCCC--CCCCCACACCACCACCATACGA-G-AGAATG----CGGATCTGATGT---A----GTACGGTACGG-ATGAA-AAGCTTTT----A-AGTA-CT------------A-T---AAAGGA-TTCCTGGAATTTGATGAC----AA-CTGC----T--TATTATTG--TT-AAAAAAT-AG--AAA-T--AT--GGATA--TATAGGACAGT---GAAT-GTCATCA----ACACTGGGG---GGGGGGGGGGGGGGG---T--C--A-TAGAAATG-TGC-AAA-ACCTACAAGAATATTGT-GGA-CT-T--CAT--ATCAT-ATGCTCAT--AATAATGACTCT--ATTTTC-GTC---A---TGACCT-TG-CAT-A--GGCCAGAC-T-T-TTAAA---AAAAA-----ATTACCAGAAAT-AT-G-AAAAT---TAACAAT----ATGAT-AAA-ATA---TTTAATT--TTTAGTA-T-CACTTGGACATCT--TCTTTCTG----T-TATTGTG-TA-ACTTAACTT-CAATAACTAG-TACTTGCATTTTT--CCA-T-GT-CAG-AA---TGCA---------AA---GC-AT-GA-C-C---TTA-A-TG-AG--T-C-TAAGT-TA-CAA--TTATGA----AAAAT----ATC-TT--TTTGACTGAGT-GGGTGTCAATGCC-CA--ATGGGGGTTTTCAGT-C--A-TTTAAGAAT-TAGGGGCAAGA--TTTTCT-ATA-TG-ACAGAATTTTAT-C--ATGGC-TACATTAA-ATTCA-C-ATAA-TAGTA-TTTTT-TA-----ACTATA--C-CCT-TT--A--TGAAGTTAA-TTTGATGAA------TT--A-ATATTC-ATCAG-ACACATCCACTATAT---AC-AT-GTATTTAGA-T-ATCAAT-AAAACAG----A-TTTC-AAATAGCTACT----G--CTAGATCCCA-TGTA
gi|30 : GAGAACTACTGTAGACAAGGACACATTAT-T-CAGCATAG-TAATAAACTATGGATTCATTT-ATTT
gi|31 : GGGG---GGGGGGGGGGAG------C--C--A-TA-AAAT--TGCAAGACACCTGTAAGAACATTAT-GGT-AT-T--CAT
gi|32 : gGCTAC-GCA--G--TCTCGCGCCGTC-TCTCTTCCGGTGGACAACTTTCGGAG
gi|4 : ataggC--CCCCCACACCACCACCATACGACGCAGAATG----CGGACTCGATGT----C---GTACAGTACGGTATGA--AAGCTTTT----ACAGTACCT-----------TA-T---AAAGGATTTCCTGGAA-TTGATGGCACAAAA-ATGC----TCATATTAT-GAATT-AAAAAATAAG--AAAATCAATGAGAATACTTAAAGGACAGTCGCAAGT-GTCATCAACACACACT--GG---GCGGGGGGGGTG------T--CCGA-TA-AAATG-TGCAAGA-CCCTAC-AGAATA-TGT--GA-CT-T--CATGTA-CATCATGCTCAT--AATAAT---TCTTAATTTTCAGTC---AATATTACCTATGCCAT-ATTGGTCAGAC-TATATTAAATTTAATTATTACGCTTGACAC--ATAAT-GAAAAATTAATAACAAT----ATGACTAAACATAATTTTTAATTTGTTTAGTA-T-CACATTGACATCTGGTCTTTCCATCGTT-TATTGTGTTA-ACTT-ACTCACAATAACTAG-TAATTGCATTTTTTCCCACT-GTCCAGAAA---TGCA---------AA---GCGAT-GA-CGCACATTA-A-AT-GGTTT-C-TACGT-TA-CAACTGTAAGA----AAGAGAGATATC-TTCCCTTGACTGAGTCGTGCTTCAATGCCTCATTATGGAG--TTTCAGT-CCAA-ATTAAGAAT-TGAGGGCA--A--TTTTCTGATA-TG-ACAGAATAATATATGAATGGC-TACATT-A-ATTCA-C-ATAATTAGTA-TTTTTGTAAACGTATTATC--CTCTT-TT--ACCTGAAGTTAA-TTTG-TGAATT----TT--A-ATA-CC-ATCAGAAAATACCCAC-C-ATTCAACAAT-GTA-TTAGA-T-ATCAATAAAAACAGGACTA-TATCAAAATAGCTACT----GCTCTAGATCCCGATGTA
gi|5 : aggta-ACA--G--TCTCGCGTGACC-TCACTTCCGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAATAGACT--------------TTTGGATTAAAAGAAACAA-TCTGAATCATAACAA-T-TTTTTCGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACAATTAAGATGTCC-AGGTCTCCA-TCTACTACTGAGAAG-GC---GAAAAA--AAACACCCAAAAAACGGG-GG-AAA-CAAGGTAG--GTACT-----AATGTAAACAATCAGTATCAAA-CGTTAATTTACGC-CTTT-------TCTTCATTTCAC-GGATAAATGT-ATTTCATTAT-----TTATA-A-ATT-T-AC-A-TTTGTAGAG----ATT---TG-GT--GAG-TG-AAAA---TG-ACAG--CA-GCA-TAGTT-CCTATTTT--AAGGACGG-TGTGAAGGATAAAGGTACC-CCCAC--C------ACCACCACCACACGA-G-AGAATG----CGGATCTGATGT---ACAACGTACGGTACGG-ATGACTAAGCTTTTTTAAA-AGTG-TT-----------TA-T---AAAGGA-TTCCTGGAATTTGATGAC----AA-CTGCATGCT--TATTAT-A--TT-ACAAAATTAG--AAAAT--TT--TGATT--T-TAG-ACAGT---GAATAGTCATCA----ACATTGGGC---G-----------------T--C--A-TAGAAATGCTGC-AGA-CCCTACA-GAATATTGTTGGA-CT-G--CATGTATCAT-ATGCTCAT--AAAAAGGGTTCT--GTTTTC-GCC------ATAACCA-TG-CAT-A--GGCCAGAC-T-T-TTAAA---AAcaattagacatctactctagacatatttggtggaacatatataataaaaatatgtttgaattaattaaaattgaggagtacaaagcagagtattcggttcatatatgaaatctattacatagtattactagtaccaaggtctctagcttagttagcgcaactatacacataactgcacatgattattccttgccacacaattatt
gi|6 : atagggctGCTAC-ACA--G--TCTCGCGCGACC-TCACTTCCGGTGGAGGA-TCCTGGAGACAAGGACGCCTTTC-T-CAGCATAG-CAGTAGACTATGAAATCACTT-ATTTGGATTAAAAGAAACTA-TT------CTAACTA-T-TTTTTAGTGTTTGTGTGT-CATCAT-CTTGGTTTA-CGGTGAACATTTAAG-TGTCCTTGGTCACCA-TCTACTCCTGAGTAG-GCCG-AAAAAA--A-------------CGGG-G--GAA-CAAT-CAG--GTACT-----AATGTAAAC-ATCAGCATCAAAACGCTAATTTACGC-C-TT-------TCTTCA-TTCAT-GGATAATTGT-GTTTTGTTAA-----T-ATA-ACATT-TAAC-A-TTTGCACAGA--GATT---TG-GT--GAG-TGAAAAA---TG-ATAG--AA-GCA-TAGTT-CCGATTTT--AAGAACGG-TGTGAAGGATAAAAGTACC-CCCGA--CCC---CACCACCACCATCCGA-G-ATAATG----CGGATCTGATGT---AC---GTACGG-------TGAC-AAGCTTTT----A-CGTA-TT-----------TA-T---AAAGGA-TTCCTGGAATTTGATGA-----AA-CTGC----T--TATTAT-G--TTAAAAAAAT-AGAAAAAATA-AT--GG--A--TATAGGACAGT---GAAT-CGCATCA----ACACTGGGG---AGGGGGGGGGGGAGGGGTT--C--A-TGAAAGTG--GC-AGA-ATCTATACAAATTATGT-GGACCT-T--CATGTAT-AT-ATGCTCAT---GTGATGGAACT--ATTtatccatacctgaaa
gi|7 : tagg---TTTAATT-----AGTAAT-CACT--GACATCT--TCTT--CG----T-TATTGTA-TA--CTTA-CTT-CAA-AACTAG-TACTT-CATTTTT--TCA-TAGT-CAG-AAGACTACA---------A----GC-ATTGA-C-C---CTA-A-CATAG--TACACAAGT-T--C----TTACTG----AAAATA---ATC-CT--T--GACTGAGT-GG-TGTCATTGGC--------GGG--TTTCAGT-C--A-TTTAAGAAT---AGGGCAAGAGATTTTCT-ATA-TGGACAGAATCCTAT-C--ATGGC-CTCAT--A-ATTCAAC-ATAA-TATTA-TTTT---A-----ACCATTTTC-CCT-TTC-A--TGA-GTTAA-TTTGATGAGTT----TT--A-ATATTC-ATC----CACATTCA----------------TATTTAGA-T-ATCAAT-AAAACAG----ACTATCTAAGTA
gi|8 : GCTACTACA--G--TCTCGCGCGACC-TCACTTCTGGTGGAGGACTCCTGGAGACAAGGACGCCTTTC-T-CAGTATAG-CAATAGACCATGAATTCACTGGATTTGGATTGAAAGAAAAAAATC------ATAACTA-T-TTTTTCGTGGTTGTGTAT-CATCAT-CTTGGTTTA-CGGTGAACATGCAAGGTGTCC-AGGTCCCCA-TCTACTCCTGGTTTG-GC---GAAAAA--A-------------CGAG-GT-AAA-CAATGCAGGTGTACTAAATAAATGTAAACAATCAGTATGAAAACGCTTATGTACAC-GTTT-------TCCTTATTTCAC-GGATAAAAGT-ATTTAGTTAA-----T-ATATA-ATT-A-AC-A-TTTGCAGA----GATT---TC-GT--GAG-T---------------G--AA-GCA-TAGTT-CTTATTTT--AAGGACGG-TATGAAGGATAAA--TGCC-CCCCC--CCCC----CTTTCGCCATACGA-G-aacaaaaccctttttttctctccagattttgaatgatgtctttattttaaaggttctttgtcccatcaagtatcagaattcagagataacttcagcccagacatttaactctagactacatgtatttgcgatataaaaaaaaattgttgaatttataaaattgaaggaattacaaagaacattattcttcatatctagaatattatatttatgcaatttctgttagcttccatttacataatgcaatgggacttatttccttccacacaattaa
gi|9 : ttggGCTAC-ATA--AAATCTTGCGCGACC-AAACTTCCGGTGGAGGACTTCTGGAGACAAGGTTGCCTTTC-T-CAGCATAG-CAATAGACTATGAATTCACTT-ATTTGGATTAAAAGACACAA-TC------ATAACTA---TATTTCGTGTTTTTGTAT-CATCAT-CTTGGTTTA-CGGTGAACATGCAATATGTCC-AGGTACCCA-TCTACGCCTGGGCTG-GCAAAAAAAAA--A-------------CCAG-GT-AAA-TAATGCAG--GAAAT-----AATGTAAACAATCAGTATCAAAACGCTAATGTACAC-GTTT-------TCCTCATTTCAC-GGATAAATGT-A------------------------T-T-AC-A-TTTGCAGA----TATT---TC-TT--GAG-TG-AAAA---CG-ATAA--AA-AAA-TAGTT-CTTGTTTT--AAGAACGG-TATGAAGGATAAA--TGCCACCCCC--CTTTCAC
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|14 ): CTCTCTCTCTCTATATATATATAAATGATGTCTTTGAAGGTTCTTGGCCCAACAAGTATCTGAAATCAAAATTTAACAGATATCTACTGTATTCTATTTGTATATAGAACAATATGCTTAAATTTAACAAAATTGAAAGAACATGAAATGTCATTTTCCATAT
Unaligned ( gi|15 ): ACAGACATCTAACTCTATTTGTTGATACCGAAAAATATGCTTGAATTTAACAAAATTGGAGGAATATGAAATGTTTGTCTTCTTACACATCTATATATTTATCTTATTTCTGCTGTTCCACTTACATGTACAAAATGCAATGATTATTTCCTTGCACACGATA
Unaligned ( gi|16 ): ATTAGAGATCTACTGTAGACTATTTGTTGATATAAAAAAATATGTTTGAATTTATTAAATTGAAGGAATACAGGAAGATTATTCTTCATATAGACTATATATTTTATACAATTTCTGCAGTTCCACTTACATAATGCAATGATTATTCCTTGCACACAATAA
Unaligned ( gi|18 ): TCTCTCTCCAGATTTTGAATGATGTCTTTTTTTAAAGGTTATTCATTGACCCATCAAGTATTAGAATTCAGAGATCTTCAACAGACATTTAACTCTCTAGACTATTTGTCGATATAAAAAAAA
Unaligned ( gi|20 ): TCAACAGACATCTAACTCTAGACTATTTGTCGATATAAAGATAATATGCTTGAATTTATCAAAATTGAAGGAATACAAGTGATTATTTTTCATATAGATACATGTATATA
Unaligned ( gi|26 ): TATATATTTATGCAATTTCTGCAGAACTTCCCATTTACATAATGCAATGATAATGCAATAATGCAATCCTTGCACACA
Unaligned ( gi|28 ): TATATATTTATCTGATTTCTGCAGTTCCACTTAAATAATGCAATGATTAGTTCCTTGCACACTATACT
Unaligned ( gi|33 ): ATACACTGCATGAAAATTTGACTTTACAAAG