lowQualScore : 22 2222 55555555555555 1111 222222222222222222 11 77777777777777777 1111111 11111 33333333333333333333333333333 88888888888888888888888888888888888 11 1111 1111 11 1 1 1 1 1 1 11 1 11 33333333 1111 111 222 1 1 111 11 1 1
lowQualScore : 77 2 1111 2 11111111111111 77 5 6 0000 3 0 5 666666666666666666 66 4 6 66 4 44444444444444444 0 4444444 11111 33333333333333333333333333333 77 11111111111111111111111111111111111 0 5 7 22 4 2222 2 77 1111 8 88 8 11 0 0 0 0 6 3 3 3 6 7 88 3 0 0 3 22 0 33333333 7777 3 555 6 3 111 5 0 777 33 0 0 2 8
lowQualScore : .. . .... . .............. .. . . .... . . . .................. .. . . .. . ................. . ....... ..... ............................. .. ................................... . . . .. . .... . .. .... . .. . .. . . . . . . . . . . .. . . . . .. . ........ .... . ... . . ... . . ... .. . . . .
lowQualScore : 00 2 2222 5 88888888888888 55 6 7 6666 4 4 2 222222222222222222 11 4 0 88 4 00000000000000000 1 4444444 11111 33333333333333333333333333333 99 66666666666666666666666666666666666 7 7 9 11 2 1111 1 99 6666 0 88 0 00 8 0 0 0 7 3 3 3 7 3 33 0 8 0 5 55 8 11111111 2222 2 555 5 2 888 5 0 000 88 0 0 5 8
consensus : CTGGCTCATGCTGCGAGCTCTA----ATGACA---A-TG--CAC--TAAAAATAAGTCCGTGCT----GAANCTGCACATTCGTCTAGAATAAATTT-G-TCNC-CAAT--CCCAGAA-GTCCCTCA-TCAAA-ATGGGTGG--TCTCAG-GAGATCTCGCA-------AA-----GTCAC-A--CT----T-GGTCT-TAA---ATA-TTAGATCAT--CAATCT------AT-TG---TACAAA-------T-------AGTC-TTGCGGTCCCTTGGCTCCANAATACA----GNGCAC--CA-NT-AGGCC-TGCTATT-TA--ACGAAGTACAAT-GTTG-ATG-AAATGTATGAGCTACGTG-TTG-TTG-TACTAAATCAAGCATG--GCAGTNGCGGATCTA-AATNAGN-GTTTGTTTTATGCAACAAACA-TGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAG-TCATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCACGTCCAATAATGCAAACC
Reference ( gi|1 ) : CTGGCTCATGCT-TGAGTTCTA----ATAACA---A-T---CAC--TAGAAATAAATCTGTGCT----GAACCTACACATTTATCTAAAATAAATTT-G-TCTC-TAAT--CCCAGAA-GTCCATCA-ACAAA-ATGGGTGGAGTCTCAG-GAGATCTCGCA-------AA-----GTCAC-A--CT----TAGGTCT-TAA---ATACTTAGATCAT--CAATCT------AT-TG---TACAAAG------T-------AGTC-TTGTGGTCCGTTGGCTCCATAATACA----GAGCAC--CA-AT-AGGCC-TGCTGTT-TA--ACGAAGTGCAAT-GTTG-ATG-AAATGTATGAGCTACATG-TTG-TTG-TACTAAATCAAGCATG--GCAGTTGCAGATCTA-AATTAGC-GTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|18 : CTGGCTCATGCT-TGAGTTCTA----ATAACA---A-T---CAC--TAGA
gi|7 : agtgaagcgagtcaacataaatcaCTGACTCATACTGCGAGCTCTA----ATGACATACG-TGCGCAT--T-----TAAGTCCGTTGT----GATTCTGCAAATTCACTTTGATTA--TTT-GCTCAC-TAAT--CCCGGAA-ATCCCTTATGAAAA-ATGG-------C---G-GAAATCTTGCA-------AA-------CGC-A--CG----TCGCT-T-TAATTGATA-TCAGTTTAC--GAATTTAAGTAGAT-TA---TCTCAAT------TTCATCTGAGTC-TTGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CA-TT-AGGC
gi|6 : CTGGCTCATGCTATGAGCTCTATTGAATAA-A---A-TG--CA---TAAAAA--AGTCCAAGCT----ATAGCTGCATGTTTGACTA------------------CAAT--CTCAGAA-GTTCCTCA-TCAAA-AAAGGCAGA-TCTCAGTCACATCTC-CATGACCTCAA-----ATTAC-AATCTTACATAGATTTATGT---ATATTTCAATCAA--CATTCT------A---G---TA-------------------------TGTGGTTCCCTG----TACAATTCA----GTGCACTGTA-TT-AGGCt
gi|5 : aagtgcagctagccattgcgaagtgTGCT---AGCACTA----ATGGCA---AAG---CGCCTTAAAAAGGA---TGTGGC----AGAGCTGCACATTCGTCCAGAATTTGTTTTG-TTAC-CAAT--CCCAGAA-GTCTGTCA-TCGAA-A-----------------------CGCA-------AC-----GTTGC-A--TC----TTGGTC--------------AGACTGT--CAA-CT------TC-TG---TACATAATCTCCCT-------AGTC-TTGCGGTCCCCTAGGTCCAAAATA
gi|2 : tggtacATAAATCTGTGCT----GAACCTACAC-TTTATCTAAAATAAATTT-G-TCTC-TAAT--CCCAGAA-GTCCATCA-ACAAA-ATGGGTGGAGTCTCAG-GAGATCTCGCA-------AA-----GTCAC-A--CT----TAGGTCT-TAA---ATACTTAGATCAT--CAATCT------AT-TG---TACAAAG------T-------AGTC-TTGTGGTCCGTTGGCTCCATAATACA----GAGCAC--CA-AT-AGGCC-TGCTGTT-TA--ACGAAGTGCAAT-GTTG-ATG-AAATGTATGAGCTACATGTTTG-TTGTTACTAAATCAAGCATG--GCAGTTGCAGATCTA-AATTAGC-GTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACCttctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|3 : TAAATCTGTGCT----GAACCTACACATTTATCTAAAATAAATTT-G-TCTC-TAAT--CC-AGAA-GTCCATCA-ACAAA-ATGGGTGGAGTCTCAG-GAGATCTCGCA-------AA-----GTCAC-A--CT----TAGGTCT-TAA---ATACTTAGATCAT--CAATCT------AT-TG---TAC-AAG------T-------AGTC-TTGTGGTCCGTTGGCTCCATAATACA----GAGCAC--CA-AT-AGGCCTTGCTGTT-TA--ACGAAGTGCAAT-GTTG-ATGAAAATGTATGAGCTACATG-TTGTTTG-TACTAAATCAAGCATG--GCAGTTGCAGATCTA-AATTAGC-GTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|8 : AAGTCCGTGCT----GGAAATGCACATTTG---------------G-TCAC-CAAT--CCCAGAG-AACCATCT-TCAAA-AC---TGG-----CAA-G-GATCTGGCA-------AA-----GAGACAA--CT----T-GGT-T-TA----------AGATTAT--CAATAT------ACGTGGATTACCA------------------TCATTGCGGTCCCTTAGCTCCAAAGTACA----GTCCAT--CA-TT-AGGTC-TAC-ATT-TA--AAGCAATACAAt
gi|4 : aaCTGTATT----AAGCTAAAACATTCATCTAGAA-AAATTC-A-TTGA-TAATATCCCAGA--GTCCCTT---TTAA-ATG--TGA-----CAG--AGATTTCTAA-------AA-----GTCAC-A--TT----T---TGT-TGA----TG--TAGATCATTTCAATTTC-----AT--------CA---------T-------ATTC-TTGTGACCCTTTA-CTC---AATGCA----GTGTGC--CACATTAGGCC-TA--ATT-TAGAACGAAATATAAT-GTTG-ATC-AAAgctgtacgttacaaatagctatatttt
gi|10 : agTGTGCTAGTTGAATCTGCACACTCAGTAAGAATAAA----A-CCTT-TGA-----CAGAAAGTCCCTCA-TCAAACATGG---------C-G-GATATCTCGCA-------AA-----GTCACAA--CT----Tgacggaggccagatgatagatgtgtgatgccgtggtctaggtcttgacgtcatgagacaacttaaacagtgatggatctacaataaaagtttgttttgtgcaacagaaaatacaaggttttgttttctccacatagcattcactcacatgaagttaactctgcatgtcgactccatgcccagtgatgcgacct
gi|11 : gactaaagcgcgcgaaaaTTT-T-TTTCACAAT--CCCGGAG-GTCCCTCA--TAAA-A---GT----TTTCAG--AGATCTTGCA-------AATCCATGTCTC----CT----T-GATCT-CAA---CTAgttcaacagagaacttacgtggattacatgttatg
gi|9 : CCGTAATATA----AAGGAA--CA-A--A-----TGTTATCATG--ATGAAG-ACAATAGATGTGTG-ACAT-CATGGTCTATGTT-TTG-ATG-TCCTAATACAA-C-TGATGCAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAAgattaggaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|4 : tggagtggacctgcatgttaCAGTGATGGATCTACAATAAAA-GTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAatgaacaa
gi|5 : agctgtattaagctaaaacattcatctagaaaaattcattgataatatcccagagtcccttttaaatgtgacagagatttctaaaagtcacattttgttgatgtagatcatttcaatttcatcatattcttgtgaccctttactcaatgcagtgtgccacattaggcctaatttagaacgaaatataatgttgatcaaagacggaggccagatgatagatgtgtgatgccgtggtctaggtcttgacgtcatgagacaacttaaaGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCcct
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): TTTGGTCACCAATTCCATAAGTCCCTTATCAAAAAATTTCTTGATCTCAGATTACGAACAAGGCGGCGTACGTTGTCCTAATTTCATCCTAGTCTTGTGACGTCCCACCCAATGCCGT
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|14 ): TGGTAGCGCAAGTCTAATGACTGAAAGCCTACAAAAATGTCGGAACTGAAGCAGTGCATTCGTCTAGAATTTTTTTCTTACAAGATCCCAGA
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Unaligned ( gi|16 ): GTGGGTGCAGTGAGCCAGCGCAAAATGTTGGCTCATACTTAGAGCTCTAATGAATAGAGCACATGAAAAAG
Unaligned ( gi|17 ): AGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATTTTTTGTCATAAATCCCAGAAAT
Alignments
lowQualScore : 11 1111111111111111111 2222222222 666666666666666 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 1111111 3333333333333 1111 111 44444444444444 222 11 11 22222 1 111 11
lowQualScore : 00 1 8888888888888888888 2 33 0 1 333 1 4444444444 333 555 3 44 3 1 3 999999999999999 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 2 4 2 1 2222222 777 8888 5 77 0 6 6 6666666666666 6 9 8 8 7777 444 8 0 22222222222222 1 4 8 1 8 1 111 11 0 11 0 88 3 0 77777 0 8 111 11 8 8 5 2
lowQualScore : .. . ................... . .. . . ... . .......... ... ... . .. . . . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . . ....... ... .... . .. . . . ............. . . . . .... ... . . .............. . . . . . . ... .. . .. . .. . . ..... . . ... .. . . . .
lowQualScore : 66 7 3333333333333333333 1 33 9 0 777 2 5555555555 222 999 1 22 1 4 6 666666666666666 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 0 5 8 0 6666666 999 3333 7 99 1 7 7 7777777777777 7 8 0 0 8888 000 0 8 22222222222222 0 6 0 0 0 0 888 22 8 00 8 66 2 8 88888 6 0 888 00 0 0 0 8
consensus : CTGGCTCATGCTGCGAGCTCTAATG---AC--A---ANGCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TA-AA---TTT-G-TCACCA-AT--CCCAG-AAGTCCCTCATCAAA-ATGGGTGG--TCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTT-TA--ACGAAGTGCAAT-GTTG-ATGAA-------------A-TGTATGAGCTACGTGTT-GTT-GT-A--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTT--TATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG---AC--A---ATGCAC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TA-AA---TTT-G-TCNCCA-AT--CCCAG-AAGTCCCTCATCAAA-ATGGGTGG--TCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGCGGTCCCTTGGCTCCANAATACAGNGCA----C--CAN--TAGGCCT-GCTATT-TA--ACGAAGTACAAT-GTTG-ATGAA-------------A-TGTATGAGCTACGTGTT-GTT-GT-A--CTAAATC---AAG-CATG--G-----------CAGTNGCGGATCTA-AATNA-GNGTTTGTTTTATGCAACAAACA-TGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAG-T--CATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCACGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA---AC--A---AT-CAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TA-AA---TTT-G-TCTCTA-AT--CCCAG-AAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTT-TA--ACGAAGTGCAAT-GTTG-ATGAA-------------A-TGTATGAGCTACATGTT-GTT-GT-A--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTT--TATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : GTTGAATCTGCACACTC-AGTAAGAA--TA-AAACCTTT-G------A-------CAGAAAGTCCCTCATCAAACATGG-------C---GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : gactaaagcgcgcgaaaatgtgcta---TTT-T-TCAC-A-AT--CCCGG-AGGTCCCTCATAAAA-GT--------TTTCA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCAT-AAGTCCCTTATCAAA-Agaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG---ACTGA---AAGC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TT-TT---TTT-C-TTACAAGAT--CCCAG-Aaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGA--AT--A---GAGCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATTT---TTT-G-TCATAA-AT--CCCAG-AAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA---AC--A---AT-CAC--TAGA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TA-AA---TTT-G-TCTCTA-AT--CCCAG-AAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTT-TA--ACGAAGTGCAAT-GTTG-ATGAA-------------A-TGTATGAGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-T--TATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TA-AA---TTT-G-TCTCTA-AT--CC-AG-AAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTT-TA--ACGAAGTGCAAT-GTTG-ATGAA-------------AATGTATGAGCTACATGTT-GTTTGT-A--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTT--TATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---A-AA---TTC-A-TTGATA-ATATCCCAG-A-GTCCCTTTT--AA-ATG--TGA-----CAG-AGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATT-TAGAACGAAATATAAT-GTTG-ATCAAAGACGGAGGCCAGA-TG-AT-AGATGTGTGAT-GCC-GT-GGTCTAGGTCTTGACGTCATG--AGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG--------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG---GC--A---AAGCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TT-TG---TTTTG-TTACCA-AT--CCCAG-AAGTCTGTCATCGAA-A----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATT-TA--ACGA--CACA-----TG-GCAAG-------------A-CG-ATGTGTTACGTcct
gi|5 : tggGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAA--TAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCcatggctgtgtgttgacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctCTGGCTCATGCTATGAGCTCTATTGAATAA--A---ATGCA---TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA-----------------------CA-AT--CTCAG-AAGTTCCTCATCAAA-AAAGGC-----------AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG---AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T---A---TTT-GCTCACTA-AT--CCCGG-AAATCCCTTATGAAA-A---ATGG--C----GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G---------------------G-TCACCA-AT--CCCAG-AGAACCATCTTCAAA-AC---TGG-----CAAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATT-TA--AAGCAATACAAt
gi|9 : aaT-GTTATCATG--ATGAAG-ACAATAGATGTGTGAC-------------A-T-CATGGTCTATGTTTT-GAT-GT-C--CTAATAC---AA--C-TGATG-----------CAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAA-A-TGgctgtacgttacaaatagctatatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Alignments
lowQualScore : 11 1 11 22 222222222 666666666666666 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 11111111 1111 111 444444444444444444444444 11 111 44444444444444 11 11 11 1 111 11
lowQualScore : 00 1 0 11 999999 2 11 0 00 0 1 333 1 000000000 666 5 3 44 1 3 999999999999999 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 4 2 1 44444444 777 1111 77 000 1 6 6 777777777777777777777777 1 6 8 8 11 444 8 0 22222222222222 0 4 8 1 8 2 9 11 0 11 0 88 3 0 11 0 8 111 11 8 8 5
lowQualScore : .. . . .. ...... . .. . .. . . ... . ......... ... . . .. . . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . ........ ... .... .. ... . . . ........................ . . . . .. ... . . .............. . . . . . . . .. . .. . .. . . .. . . ... .. . . .
lowQualScore : 66 7 0 99 000000 2 99 8 66 3 0 777 2 888888888 222 8 1 22 4 6 666666666666666 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 5 8 0 66666666 999 8888 99 000 4 7 7 000000000000000000000000 7 7 0 0 00 000 0 8 22222222222222 6 6 0 0 0 5 2 22 8 00 8 66 2 8 88 6 0 888 00 0 0 0
consensus : CTGGCTCATGCTGCGAGCTCTAATG-AC--A---AAGCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAA-ATGGGTGG--T-TCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG-AC--A---ANGCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAA-ATGGGTGG--TCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA-AC--A---AT-CAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : G-ACT-A---AAGCGCG-CGAAAAT--GTGCTAGTTGAATCTGCACACTC-AGTAAGAA--TAAAACCTTT-G-ACA-----------GAAAGTCCCTCATCAAACATGG---------C-GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : ---TTT-T-TCAC-A-AT--CCCGGAGGTCCCTCATAAAA-GT--------TTTCA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCATAAGTCCCTTATCAAA-Agaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG-ACTGA---AAGC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TTTT---TTT-C-TTACAAGAT--CCCAGAaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGAAT--A---GAGCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATT---TTTTG-TCATAA-AT--CCCAGAAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA-AC--A---AT-CAC--TAGA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CC-AGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------AATGT------ATGAGCTACATG-TTGTTTG-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---AAA---TTC-A-TTGATA-ATATCCCAGA-GTCCCTTTT--AA-ATG--TGA-----CAG-AGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATTTAGAACGA---AATATAAT-GTTG-ATCAAAGACGGAGGCCAGA-TG-------AT-AGATGTGTG-ATGCC-G-TGGTCTAGGTCTTGACGTCATG--AGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG-GC--A---AAGCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TTTG---TTTTG-TTACCA-AT--CCCAGAAGTCTGTCATCGAA-A----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATTTA--ACGACACATGGCAA-----G-ACGAT-------------G-TGTTACGTCATG-GCTGTGTG-TTGcct
gi|5 : tggGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctCTGGCTCATGCTATGAGCTCTATTGAAT--A---AAATGCA-TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA----------------------CA-AT--CTCAGAAGTTCCTCATCAAA-AAAGGC-----------AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG-AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T--A---TTT-GCTCACTA-AT--CCCGGAAATCCCTTATGAAA-A---ATGG--C----GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G--------------------G-TCACCA-AT--CCCAGAGAACCATCTTCAAA-AC---TGG-----CAAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATTTA--AAGC---AATACAAt
gi|9 : aaTG--ATGA---AG-ACAATAGATGTGTGAC-------------A-T-C------ATGGTCTATGTT-TTGAT-G-TC--CTAATAC---AA--C-TGATG-----------CAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAAgctgtacgttacaaatagctatatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Alignments
lowQualScore : 11 1 11 111 222 222222222 777777777777777 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 11111111 1111 111 444444444444444444444444 11 111 44444444444444 11 11 11 1 111 11
lowQualScore : 00 1 0 11 000 1 555 00 0 1 333 1 000000000 666 5 3 44 1 3 222222222222222 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 4 2 1 44444444 777 1111 77 000 1 6 6 777777777777777777777777 1 6 8 8 11 444 8 0 22222222222222 0 4 8 1 8 2 9 11 0 11 0 88 3 0 11 0 8 111 11 8 8 5
lowQualScore : .. . . .. ... . ... .. . . ... . ......... ... . . .. . . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . ........ ... .... .. ... . . . ........................ . . . . .. ... . . .............. . . . . . . . .. . .. . .. . . .. . . ... .. . . .
lowQualScore : 66 7 0 99 000 7 111 66 3 0 777 2 888888888 222 8 1 22 4 6 111111111111111 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 5 8 0 66666666 999 8888 99 000 4 7 7 000000000000000000000000 7 7 0 0 00 000 0 8 22222222222222 6 6 0 0 0 5 2 22 8 00 8 66 2 8 88 6 0 888 00 0 0 0
consensus : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAA-ATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAA-ATGGGTGG---TTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA----TCAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : G-ACT-AAA---GCGCG-CGAAAAT--GTGCTAGTTGAATCTGCACACTC-AGTAAGAA--TAAAACCTTT-G-ACA-----------GAAAGTCCCTCATCAAACATGG---------C-GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : ---TTT-T-TCAC-A-AT--CCCGGAGGTCCCTCATAAAA-GT---T-----TTCA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCATAAGTCCCTTATCAAA-Agaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG-ACTGAAA---GC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TTTT---TTT-C-TTACAAGAT--CCCAGAaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGAAT--AGA---GCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATT---TTTTG-TCATAA-AT--CCCAGAAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACCtcactaga
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CC-AGAAGTCCATCAACAAA-ATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------AATGT------ATGAGCTACATG-TTGTTTG-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---AAA---TTC-A-TTGATA-ATATCCCAGA-GTCCCTTTT--AA-ATG--TGA-----CAG-AGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATTTAGAACGA---AATATAAT-GTTG-ATCAAAGACGGAGGCCAGA-TG-------AT-AGATGTGTG-ATGCC-G-TGGTCTAGGTCTTGACGTCATG--AGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG-GC--AAA---GCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TTTG---TTTTG-TTACCA-AT--CCCAGAAGTCTGTCATCGAA-A----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATTTA--ACGACACATGGCAA-----G-ACGAT-------------G-TGTTACGTCATG-GCTGTGTG-TTGcct
gi|5 : tggGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctCTGGCTCATGCTATGAGCTCTATTGAAT--AAA---ATGCA-TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA----------------------CA-AT--CTCAGAAGTTCCTCATCAAA-AAAGGC-----------AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG-AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T--A---TTT-GCTCACTA-AT--CCCGGAAATCCCTTATGAAA-A---ATGG---C---GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G--------------------G-TCACCA-AT--CCCAGAGAACCATCTTCAAA-AC---TGG-----CAAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATTTA--AAGC---AATACAAt
gi|9 : aaTG--ATGA---AG-ACAATAGATGTGTGAC-------------A-T-C------ATGGTCTATGTT-TTGAT-G-TC--CTAATAC---AA--C-TGATG-----------CAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAAgctgtacgttacaaatagctatatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Alignments
lowQualScore : 11 1 11 111 222 222222222 777777777777777 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 11111111 1111 111 444444444444444444444444 11 111 44444444444444 11 11 11 1 111 11
lowQualScore : 00 1 0 11 000 1 555 00 0 1 333 1 000000000 666 5 3 44 1 000000000000000 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 4 2 1 44444444 777 1111 77 000 1 6 6 777777777777777777777777 1 6 8 8 11 444 8 0 22222222222222 0 4 8 1 8 2 9 11 0 11 0 88 3 0 11 0 8 111 11 8 8 5
lowQualScore : .. . . .. ... . ... .. . . ... . ......... ... . . .. . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . ........ ... .... .. ... . . . ........................ . . . . .. ... . . .............. . . . . . . . .. . .. . .. . . .. . . ... .. . . .
lowQualScore : 66 7 0 99 000 7 111 66 3 0 777 2 888888888 222 8 1 22 4 333333333333333 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 5 8 0 66666666 999 8888 99 000 4 7 7 000000000000000000000000 7 7 0 0 00 000 0 8 22222222222222 6 6 0 0 0 5 2 22 8 00 8 66 2 8 88 6 0 888 00 0 0 0
consensus : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA----TCAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : G-ACT-AAA---GCGCG-CGAAAAT--GTGCTAGTTGAATCTGCACACTC-AGTAAGAA--TAAAACCTTT-G-ACA-----------GAAAGTCCCTCATCAAAC---ATGG---C---GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : ---TTT-T-TCAC-A-AT--CCCGGAGGTCCCTCATAAAAGT---T-----TTCA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCATAAGTCCCTTATCAAAAgaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG-ACTGAAA---GC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TTTT---TTT-C-TTACAAGAT--CCCAGAaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGAAT--AGA---GCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATT---TTTTG-TCATAA-AT--CCCAGAAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACCtcactaga
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CC-AGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------AATGT------ATGAGCTACATG-TTGTTTG-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---AAA---TTC-A-TTGATA-ATATCCCAGA-GTCCCTTTT--AAATG--TGA---C---AGAGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATTTAGAACGA---AATATAAT-GTTG-ATCAAAGACGGAGGCCAGA-TG-------AT-AGATGTGTG-ATGCC-G-TGGTCTAGGTCTTGACGTCATG--AGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG-GC--AAA---GCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TTTG---TTTTG-TTACCA-AT--CCCAGAAGTCTGTCATCGAAA----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATTTA--ACGACACATGGCAA-----G-ACGAT-------------G-TGTTACGTCATG-GCTGTGTG-TTGcct
gi|5 : tggGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctCTGGCTCATGCTATGAGCTCTATTGAAT--AAA---ATGCA-TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA----------------------CA-AT--CTCAGAAGTTCCTCATCAAAAAAGGC-----------AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG-AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T--A---TTT-GCTCACTA-AT--CCCGGAAATCCCTTATGAAAA---ATGG---C---GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G--------------------G-TCACCA-AT--CCCAGAGAACCATCTTCAAAAC---TGG---C--AAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATTTA--AAGC---AATACAAt
gi|9 : aaTG--ATGA---AG-ACAATAGATGTGTGAC-------------A-T-C------ATGGTCTATGTT-TTGAT-G-TC--CTAATAC---AA--C-TGATG-----------CAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAAgctgtacgttacaaatagctatatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Alignments
lowQualScore : 11 1 11 111 222 222222222 777777777777777 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 11111111 1111 111 444444444444444444444444 11 111 44444444444444 11 11 11 1 111 11
lowQualScore : 00 1 0 11 000 1 555 00 0 1 333 1 000000000 666 5 3 44 1 000000000000000 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 4 2 1 44444444 777 1111 77 000 1 6 6 777777777777777777777777 1 6 8 8 11 444 8 0 22222222222222 0 4 8 1 8 2 9 11 0 11 0 88 3 0 11 0 8 111 11 8 8 5
lowQualScore : .. . . .. ... . ... .. . . ... . ......... ... . . .. . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . ........ ... .... .. ... . . . ........................ . . . . .. ... . . .............. . . . . . . . .. . .. . .. . . .. . . ... .. . . .
lowQualScore : 66 7 0 99 000 7 111 66 3 0 777 2 888888888 222 8 1 22 4 333333333333333 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 5 8 0 66666666 999 8888 99 000 4 7 7 000000000000000000000000 7 7 0 0 00 000 0 8 22222222222222 6 6 0 0 0 5 2 22 8 00 8 66 2 8 88 6 0 888 00 0 0 0
consensus : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA----TCAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : G-ACT-AAA---GCGCG-CGAAAAT--GTGCTAGTTGAATCTGCACACTC-AGTAAGAA--TAAAACCTTT-G-ACA-----------GAAAGTCCCTCATCAAAC---ATGG---C---GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : ---TTT-T-TCAC-A-AT--CCCGGAGGTCCCTCATAAAAGT---T-----TTCA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCATAAGTCCCTTATCAAAAgaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG-ACTGAAA---GC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TTTT---TTT-C-TTACAAGAT--CCCAGAaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGAAT--AGA---GCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATT---TTTTG-TCATAA-AT--CCCAGAAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACCtcactaga
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CC-AGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------AATGT------ATGAGCTACATG-TTGTTTG-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---AAA---TTC-A-TTGATA-ATATCCCAGA-GTCCCTTTT--AAATG--TGA---C---AGAGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATTTAGAACGA---AATATAAT-GTTG-ATCAAAGACGGAGGCCAGA-TG-------AT-AGATGTGTG-ATGCC-G-TGGTCTAGGTCTTGACGTCATG--AGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-------AAATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG-GC--AAA---GCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TTTG---TTTTG-TTACCA-AT--CCCAGAAGTCTGTCATCGAAA----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATTTA--ACGACACATGGCAA-----G-ACGAT-------------G-TGTTACGTCATG-GCTGTGTG-TTGcct
gi|5 : tggGTAATTGAA--AATACAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctCTGGCTCATGCTATGAGCTCTATTGAAT--AAA---ATGCA-TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA----------------------CA-AT--CTCAGAAGTTCCTCATCAAAAAAGGC-----------AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG-AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T--A---TTT-GCTCACTA-AT--CCCGGAAATCCCTTATGAAAA---ATGG---C---GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G--------------------G-TCACCA-AT--CCCAGAGAACCATCTTCAAAAC---TGG---C--AAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATTTA--AAGC---AATACAAt
gi|9 : aaTG--ATGA---AG-ACAATAGATGTGTGAC-------------A-T-C------ATGGTCTATGTT-TTGAT-G-TC--CTAATAC---AA--C-TGATG-----------CAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAAgctgtacgttacaaatagctatatttt
blockSeqs : GC C A TG CGT G CTT T AGT G TAAAACC TG C G AT C TGGGTGGAGTCTCAG TCCAT A T CCA A T TTGATA T C CTTA TT AAGTAGATTATCTCAATTTCATCTG A AGTA G T A GAGTTC CAT TGCT GA CAC T A T AGACGGAGGCCAGATG A T T T GT TTG T AGACAACTTAAA A C T G C T TA AA TT G TT A T GAA AC C G G
blockSeqs : TA T A T . A GC G AG G ATTATT TG A . . C TGGGTGGAGTCTCAG . . T . A T CTAGA T . . . TCTGTACATAATCTCCCT . . G T A ACTG A GCT . . T . . GTGTTACGTC A . . . . . . ATG A . T . C . T . T G AA A . A . . . G
blockSeqs : GC C . . . G AT A GT G TTTT GC A . . C TGTGACA . . A . . T ATAC T . . . ATGTATATTTCAATCAAC . . A A T AC A AC . . T . . AATGT A . . . . . . G G . A . . . A . G A T . . A . . . .
blockSeqs : AT C . . . G AT C AT A TAAA G T . . A CTGGCAA . . . . . T ATAC T . . . ACGTGGATTACCA . . G C T AC T A . . G . . ATGT G . . . . . . G C . G . . . . . . . . . . . . .
blockSeqs : GC C . . . G T C AT A TAAA T T . . A ATGGCG . . . . . T ATG C . . . ATTGTACAAAGT . . G C T GC T T . . T . . ATC . .
blockSeqs : T . . . . . . G AT G TTTG G T . . C TTTTCA . . . . . T A . . . . ATTGTACAAGT . . . A C AA T . . .
blockSeqs : . . G GT G AAA C C . . G ATGGCG . . . . . . . . . . . CATCAT . . . . T AT T
blockSeqs : T GA G TA G C . . C AAGGC . . . . . . . . .
blockSeqs : A AC . . G T . . C . . . . . .
blockSeqs : G . . A C . . A
blockSeqs : G . . .
blockSeqs : . . . .
blockSeqCons : GC T** TGTGGCAG******* ATA**** ATTGTACAAAT******************************** ACT* AGTGT******************* **
originalCons : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGGGTGG---CTCAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGA---AGTGCAAT-GTTG-ATGAA-------------A-TGT------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
finalCons : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGCT--AAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATGTGGCAG-------GAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAAATA----TTA-GAT----CAT--CAATCTATTGTACAAAT--------------------------------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCTACT-GTTTA--ACGA---AGTGCAAT-GTTG-ATGAAAGTGT-------------------ATGAGCTACGTG-TTGTT-G-TA--CTAAATC---AAG-CATG--G-----------CAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGG--AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA
Alignments
lowQualScore : 11 1 11 111 222 222222222 555555555555555 11111 1 1 3333333 1111 6666666666666666666666666666666666666666666 1111 11111111 1111 555555555 11 1111 111 44444444444 22222222 11 11 1 111 11
lowQualScore : 00 1 0 11 000 1 555 00 0 1 333 1 000000000 666 5 3 44 1 222222222222222 00000 4 2 777 2 1 1111111 3 4 0000 66 2222222222222222222222222222222222222222222 5 0000 4 2 1 44444444 777 4444 99 555555555 11 8 8 7777 444 8 0 99999999999 0 4 8 1 8 99999999 0 33 0 88 3 0 11 0 8 111 11 8 8 5
lowQualScore : .. . . .. ... . ... .. . . ... . ......... ... . . .. . ............... ..... . . ... . . ....... . . .... .. ........................................... . .... . . . ........ ... .... .. ......... .. . . .... ... . . ........... . . . . . ........ . .. . .. . . .. . . ... .. . . .
lowQualScore : 66 7 0 99 000 7 111 66 3 0 777 2 888888888 222 8 1 22 4 333333333333333 00000 0 0 000 0 9 4444444 4 4 6666 99 0000000000000000000000000000000000000000000 0 6666 5 8 0 66666666 999 8888 22 222222222 00 0 0 8888 000 0 8 00000000000 6 6 0 0 0 22222222 8 88 8 66 2 8 88 6 0 888 00 0 0 0
consensus : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAACG--TGG-----CAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-GCTGTTTA--ACGAAGTGCAATGTTGATGAAAG--------CGTATG--AGCTACGTGTT-GTT-GT-A--CTAAATC---AAG-CATGA----------GCAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
Reference ( family-269 ) : CTGGCTCATGCTGCGAGCTCTAATG-AC--AAA---GCGC--TAAAAATAAGTCCGTGCTGAANCTGCACATTC-GTCTAGAA--TAAA---TTT-G-TCACCA-AT--CCCAGAAGTCCCTCATCAAAATG--TGG-----CAGGAGATCTCGCAAA-----GTCAC-A-CT---T-GGTCTTAA---ATA-TTA-GAT----CAT--CAATCT------AT-TG---TACA--------AA------T--------AGTC-T----TGTGGTCCCTTGGCTCCANAATACAGNGCG----C--CAN--TAGGCCT-ACTGTTTA--ACGAAGTGCAATGTTGATGAAAG--------TGTATG--AGCTACGTGTT-GTT-GT-A--CTAAATC---AAG-CATG-----------GCAGTTGCGGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGG--AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCCGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|1 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA----TCAC--TAGAAATAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGAAGTGCAATGTTGATGAAA---------TGTATG--AGCTACATGTT-GTT-GT-A--CTAAATC---AAG-CATG-----------GCAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGTAAATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAGTTTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACC
gi|10 : G-ACT-AAA---GCGCG-CGAAAAT--GTGCTAGTTGAATCTGCACACTC-AGTAAGAA--TAAAACCTTT-G-ACA-----------GAAAGTCCCTCATCAAA-CA--TGG-----C-GGATATCTCGCAAA-----GTCACAA-CT---T-GTTC
gi|11 : ---TTT-T-TCAC-A-AT--CCCGGAGGTCCCTCATAAAAGT---TTT-----CA-GAGATCTTGCAAATCCATGTCTC---CT---T-GATCTCAACT-AGA-TTA-Gaacagagaacttacgtggattacatgttatg
gi|12 : tt---TTG-G-TCACCA-AT--TCCATAAGTCCCTTATCAAAAgaacttttaacgcagattctaaattcaaatgcgaactttagagtgttctcttgta
gi|14 : tGCAAG-TCTAATG-ACTGAAA---GC-C--TACAAAAATGTCGGAACTGAAGCAGTGCATTC-GTCTAGAA--TTTT---TTT-C-TTACAAGAT--CCCAGAaatttcttgatctcagattacgaacaaggcggcgtacgttgtcctaatttcatcctagtcttgtgacgtcccacccaatgccgt
gi|16 : tggtagcTGGCTCATACTTAGAGCTCTAATGAAT--AGA---GCACA-TGAAAA
gi|17 : gtgggtgcagtgagccagcgcaaaatgtAGTACGCGACAAAACTGCGCATTCAGTCTAGAAATTATT---TTTTG-TCATAA-AT--CCCAGAAATag
gi|18 : CTGGCTCATGCT-TGAGTTCTAATA-AC--AA
gi|2 : agtgaagcgagtcaacataaatcaATAAATCTGTGCTGAACCTACAC-TTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CCCAGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AAG-----T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCT-GCTGTTTA--ACGAAGTGCAATGTTGATGAAA---------TGTATG--AGCTACATGTTTGTT-GTTA--CTAAATC---AAG-CATG-----------GCAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACATTGGT-AATAAG--AAAGGAAGCCTTTGG-TTTTTTTCTGCAGCTAAAAAG-TTATCCGCTCAAA-CAT--ATTTA--TCAG-AT-TCAATTCCTTGGCATGTCCAATAATGCAAACCtcactaga
gi|3 : TAAATCTGTGCTGAACCTACACATTT-ATCTAAAA--TAAA---TTT-G-TCTCTA-AT--CC-AGAAGTCCATCAACAAAATGGGTGGAGTCTCAGGAGATCTCGCAAA-----GTCAC-A-CT---TAGGTCTTAA---ATACTTA-GAT----CAT--CAATCT------AT-TG---TACA--------AG------T--------AGTC-T----TGTGGTCCGTTGGCTCCATAATACAGAGCA----C--CAA--TAGGCCTTGCTGTTTA--ACGAAGTGCAATGTTGATGAAAA--------TGTATG--AGCTACATGTT-GTTTGT-A--CTAAATC---AAG-CATG-----------GCAGTTGCAGATCTA-AATTA-GCGTTTGTTTTATGCAACAAACA-TGG--AATAAGAAAAAGGAAGCCTTTGGTTTTTTTTCTGCAGCTAAAAAGTTTATCCGCTC-AA-CAT--ATTTA--TCAG-AT-TCAATTCCTT-GCATGTCCAATAATGCAAACC
gi|4 : ACATTC-ATCTAGAA---AAA---TTC-A-TTGATA-ATATCCCAGA-GTCCCTTTT--AAATG--TGA-----CAG-AGATTTCTAAAA-----GTCAC-A-TT---T-TGTT---G---ATG-T-A-GAT----CATTTCAATTTC-----AT-C-----------------A------T--------ATTC-T----TGTGA-CCCTTTACTC---AATGCAGTGTG----C--CACATTAGGCCT-A--ATTTAGAACGAAATATAATGTTGATCAAAGACGGAGGCCAGATGATAGATGTGTGAT-GCC-GT-GGTCTAGGTCTTGACGTCATGAGACAACTTAAACAGTGATGGATCTACAATAA-AAGTTTGTTTTGTGCAACAGA-----A--AATA----CAAGG----TTTTG---TTTTCTCCACA--TAG------CATTCACTC--A-CATGAAGTTAACTCTGCATGTCGACTC-----CATGCCCAGTGATGCGAt
gi|5 : agctgtattaagctaaaTACTGCTAGCACTAATG-GC--AAA---GCGCCTTAAAAAGGA---TGTGGCAGAGCTGCACATTC-GTCCAGAA--TTTG---TTTTG-TTACCA-AT--CCCAGAAGTCTGTCATCGAAA----------------------CGCAAC-----GTTGC-ATCT---T-GGTC-------------A-GAC----TGT--CAA-CT------TC-TG---TACAT-------AATCTCCCT--------AGTC-T----TGCGGTCCCCTAGGTCCAAAATATTCTGTA----A--CAT--CAAG------TATTTA--ACGAcct
gi|5 : tggAAGCCACTGG-GATTTTTCCGCGACTAAAAATAACAACTGCTTAAATCAT---TCTA--CCAC-TT-TGAATTCCTTGGAACATCAGATAATGCAAACCcacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctgtaattgaaaatacaagccactgggatttttccgcgactaaaaataacaactgcttaaatcattctaccactttgaattccttggaacatcagataatgcaaacc
gi|6 : tggtactgctagcactaatggcaaagcgccttaaaaaggatgtggcagagctgcacattcgtccagaatttgttttgttaccaatcccagaagtctgtcatcgaaacgcaacgttgcatcttggtcagactgtcaacttctgtacataatctccctagtcttgcggtcccctaggtccaaaatattctgtaacatcaagtatttaacgacacatggcaagacgatgtgttacgtcatggctgtgtgttgacgttacagtctggtatctgtaattgaaaatacCTGGCTCATGCTATGAGCTCTATTGAAT--AAA---ATGCA-TAAAA--AAGTCCAAGCTATAGCTGCATGTTT-GACTA----------------------CA-AT--CTCAGAAGTTCCTCATCAAAA-A--AGG-----C---AGATCTC----A-----GTCAC-ATCTCCAT-GACCTCAA-----A-TTACAATCTTACAT--AGATTT------A--TG---TATATTTCAATCAA------C--------ATTC-TAGTATGTGGTTCCCTG----TACAATTCAGTGCA----CTGTAT--TAGGC
gi|7 : aagtgcagctagccattgcgaagtgCTGACTCATACTGCGAGCTCTAATG-AC--ATACGTGCGC-----ATTTAAGTCCGTTGTGATTCTGCAAATTC-ACTTTGAT--T--A---TTT-GCTCACTA-AT--CCCGGAAATCCCTTATGAAAA-A--TGG-----C-GGAAATCTTGCAAA-------CGC-A-CG---T-CGCTTTAATTGATA-TCA-GTT----TAC--GAATTTAAGTAGAT-TA---TCTC--------AA------TTTCATCTGAGTC-T----TGTGATCCCTTG----CACAATGCAGCGTGAGTTC--CAT--TAGGC
gi|8 : AAGTCCGTGCTGGAAATGCACATTT-G--------------------G-TCACCA-AT--CCCAGAGAACCATCTTCAAAAC---TGG-----CAAG-GATCTGGCAAA-----GAGAC-AACT---T-GGT-TTAA-----------GAT----TAT--CAATAT------ACGTGGATTACC--------A------------------TCAT----TGCGGTCCCTTAGCTCCAAAGTACAGTCCA----T--CAT--TAGGTCT-AC-ATTTA--AAGCAATACAAt
gi|9 : aaATG--GTCTATGTTTT-GAT-GT-C--CTAATAC---AA--C-TGAT---------GCAGTGGTCAATCTA-AATGAGGAGTTTGTTCCCTGCAACAAA-AT--G--AACAAgctgtacgttacaaatagctatatttt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|13 ): AAATGGTGGAAATCTCATCAAATCAAATCCCTTGATCTCAGATTATCAATTAACTTATATGTGGATTATCTCAATTTCATCCTTTGTCTTGTG
Unaligned ( gi|15 ): AATACGATGGAAGTGTGACGTCATGGTCTATATCTTGAAGTAATAAAACAACTGAGGCCGTGGCTGAGATAAATTAGGAA