lowQualScore : 55555555555 22222222222222222222 111 111 1111 11111 44444 11 111111 1111 111 666666666 44444444444444444444 3333333 1111 111111 11 222
lowQualScore : 7 0 11111111111 22222222222222222222 9999 111 9 666 5 5 5 3 0000 9999 0 77777 11111 2 4 00 55 4 4 444444 4 5 5555 5 333 777777777 5 5 8 6 5 5 33333333333333333333 77 9999 4 4 888 2222222 22 0000 6 5 888 5 66 555555 4 66 4 4 44 666 6 8 4
lowQualScore : . . ........... .................... .... ... . ... . . . . .... .... . ..... ..... . . .. .. . . ...... . . .... . ... ......... . . . . . . .................... .. .... . . ... ....... .. .... . . ... . .. ...... . .. . . .. ... . . .
lowQualScore : 3 7 44444444444 22222222222222222222 5555 777 0 666 0 0 0 2 6666 0000 1 22222 88888 7 4 66 66 0 0 444444 4 0 0000 0 888 333333333 7 7 7 0 0 0 00000000000000000000 11 2222 4 4 888 1111111 44 6666 0 0 888 0 99 444444 4 11 4 4 00 000 0 2 4
consensus : GATACTATCTAATGCATTACATT-AT------TAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTCTG--CAAAGGGAAAT-A-A-CTC----AGAT--T-GACATN-TCGAAATAA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTA-A-CCAATCT--TT-GT---AAANNTTT---GAT-AT-GCGAGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCATTT-C--G-GTA-GGTTTA---GGTA-AT---TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATC-A-CCN-TC--ATTTCGGTAATTCGG-GGTACCC
Reference ( gi|5 ) : GATACTATCTAGTGCATTACATTCAC------TAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTCTT--CAAAGGGAAAT-A-A-CTC----AGAT--T-GACACC-TCAAAATAAAAATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTA-A-CCAATCT--TT-GT---AAATCTTTTAAAAT-AT-GTAAGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCATTT-T--G-GTA-GGTTTA---GGTAGAT---TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATC-A-CCA-TC--TTTTCAGTAATTCAG-GGTACCC
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-G-ATG---ACA------TT--TACAGGAACAC-ATA-C-C----AGATACT-GAC
gi|3 : tACACT-TCTAGTGCATTACATG----------AGATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTCTG--CAAGGGAATAT-A-AACTC----AGAT--T-G-CATA-TTGAAATAA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATA-ATCCAAT-T--TT-GT---AAAT---TTGATAT-GT-GGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCATTT-C--GAGTA-GGTTT----GGTA--T---CCATCG----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATC-A-CCC-TC--ATTTCGGTAATTCGA-GGTACC
gi|6 : ttcaattggaagttctaaaaaatctaacaaattatgaccATACTATCTAATGCATTACATTGAT------TAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTCTG--CAAAAGGAAAT-A-A-CTC----AGAT--T-GACACC-ACAAAAT---AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|1 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaCATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTCTG--CAAAGGGAAATAA-A-CTC----AGAT--T-GACATA-TCAAAAT--TAATTCGTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATA-G-CCAATCT--TT-GT---AAAAATTT---GATCAT-GTGAGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCATTTCC--G-GTACGGTTTA---GGT--ATTCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATC-A-CCC-TTAATTTCCGGTAATTCGG-GTTACC
gi|2 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatATTACA---AT------TAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCTG-CAAAGGGAAAT-A-A-CTTCCCAAGAT--T-GACATA-TCAAAA--ATAATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATA-A-GCAATCT--TTTGT---AAATTTT---GAAT-ATTGTGAGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCATTT-C--G-GTA-GGTTTA---GGTAT-C---TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATC-ACCCACTC--ATTTCGGTAATTCCGAGGTA
gi|4 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTTTTGCCAA--GGAAAT-A-A-C-C----AAAT--TTGACATCATCGATATAA---TCGGTTTTTA--TGGCCAC-GA-----------------GGACA-TCAATTT--TT-GTTGTAAAAATTT--GAGT-AT-GTGAGTAGATGA-A-C-TTATGGGA-CATATG-T-------TTG-------GT-ATCATTT-TTCG-GTA-GGTTTA---GGTAT-C---TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATC-A-CCC-TCAATATTCGGTTATTCGG-GTTACCC
gi|9 : ttagactatatccttattgaacatatatttagggaAGCTTTG--CAAAGGGAAAT-A-A-CTT----AGAT----------------ATAATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTA-A-CCAATC---TT-AT----AATATTT---GAT-AA-GCGAGTAGATGACA-C------------TATG----------GA-------GT-GTTATTT-G--G-GTA-GGTTTA---GGTA
gi|14 : --CAAAGGGAAAT-A-A-CTC----AGAT--T-GAC---------ATA-----TG--TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATA-
gi|10 : gACT-TCAAAATAA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCA-A-CCGATCA--TT-GTC--AAATTT-----AAT-AC-GCGAGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCACTT-T--G-GTA-G
gi|15 : AAAATAA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTA-A-CCTATAA--TT-GT---AAAa
gi|7 : tAC-CACTT-CT-TCAAA-CC--ATA-A-TCAATATGCTG-GT---AAAATTT----GAT-AT-GT-GGTAGATGACA-CTTTATAGGGACATAT------------A-------G--------T-T--G-GTA---TCTA--------------TTTCG----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATC-A-CCC-TC--ATTTCGGTAATTCGG-at
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCATTT-T--G-GTA-GGTTTACTAGGTAGAT---TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTT-A-CTG-TC--ATTTCGGTAATACGG-GGTACCCttaa
gi|16 : TAGGAACATATAAT-------TG---------T-CTCATTT-T--G-GTA-GGTTTA---GGTAGAT---TTTCGA----TAATTT-ATgt
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATC-A-CCT-TC--ATTTCGGTAATTCGA-GGTAC
gi|13 : ---T-GT--CATTTC-----A-GT--AAATC-A-ACG-TC--ATTTCGGTAATTTGG-GGTACCC
gi|12 : atagtattagtgtgacATTTC-----G-GT--AAATCAA-GCG-TA---TTTCGGTAATTCTA-GCTACCCaagaata
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 11 33333333333333333333 111 22222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 777 88 888 5 5 5 2 66 4 4 44444444444444444444 55 000 4 4 777 66666 9999 4 777 4 66 00000 4 55 4 666 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . ... .. ... . . . . .. . . .................... .. ... . . ... ..... .... . ... . .. ..... . .. . ... . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 888 44 888 0 0 0 0 99 0 0 00000000000000000000 44 000 0 0 888 88888 4444 4 888 4 11 00000 0 55 0 555 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT---AAANATTT---GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCATTT--CG-GTA-GGTTTA---GGTA-NC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATC-ACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAATGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT---AAANNTTT---GA-T-AT-GCG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCATTT--CG-GTA-GGTTTA---GGTA-AT--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATC-ACC--NTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GT---AAAAATTT---GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCATTTC-CG-GTACGGTTTA---GGTA-TTCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATC-ACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT---CAAA-TTT---AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCACTT--TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAGC--GT--A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATC-AAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT---AAA
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCATTT--TG-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-ATat
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATC-ACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT---AAATTTTG---AA-T-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCATTT--CG-GTA-GGTTTA---GGTA-TC--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATC-ACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT---AAA--TTT---GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCATTT--CGAGTA-GGTTT----GGTA-TC--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATC-ACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT---GAGT-AT-GTG--AGTAGATGA-A-C-TTATGGGA-CATATG-T-------TTG-------GT-ATCATTTTTCG-GTA-GGTTTA---GGTA-TC--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATC-ACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT---AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCATTT--TG-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATC-ACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT---AAA-ATTT---GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G--------T--TG-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATC-ACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCATTT--TG-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTT-ACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT---GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTATTT--GG-GTA-GGTTTA---GGTA-gt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 11 1 33333333333333333333 222222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 777 88 888 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 444444 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . ... .. ... . . . .. . . .................... .. .. .. . . ... ...... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 888 88 888 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 666666 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT---AAA-ATTT---GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTA-T-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT---AAANATTT---GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTA-N-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GT---AAAAATTT---GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTA-T-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT---CAA-ATTT---AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT---AAA
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGA-T--TTTCGA----TAATTT-ATat
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT---AAAT-TTT---GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTA-T-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT---AAA--TTT---GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTA-T-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT---GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTA-T-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT---AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGA-T--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT---AAA-ATTT---GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA-------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTA-GAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT---GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTA-gt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 1111 1111 1 33333333333333333333 22222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 66666 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... ..... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 00000 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTAT-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 2222 1111 1111 1111 1 33333333333333333333 2222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 0 6666 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 2222 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. . .... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... .... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 9 6666 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 8888 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAATTA-AT-TC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTATTCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAATAA----TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAATAA----TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA-AT-AA-TCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAATAA----TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C-CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATATAA----TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAA-AAATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT---AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA-----------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT-TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------ATAATAA-TCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 1111 1111 1 33333333333333333333 22222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 66666 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... ..... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 00000 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTAT-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 2222 1111 1111 1111 1 33333333333333333333 2222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 0 6666 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 2222 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. . .... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... .... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 9 6666 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 8888 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAATTA-AT-TC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTATTCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAATAA----TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAATAA----TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA-AT-AA-TCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAATAA----TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C-CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATATAA----TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAA-AAATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT---AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA-----------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT-TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------ATAATAA-TCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 1111 1111 1 33333333333333333333 22222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 66666 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... ..... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 00000 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTAT-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 2222 1111 1111 1111 1 33333333333333333333 2222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 0 6666 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 2222 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. . .... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... .... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 9 6666 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 8888 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA-AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC-TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAATTA-AT-TC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTATTCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAATAA----TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAATAA----TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA-AT-AA-TCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAATAA----TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C-CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATATAA----TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C-TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAA-AAATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT-TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT---AA-TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA-----------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT-TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------ATAATAA-TCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
Alignments
lowQualScore : 333333333 1111 111111 111 1111 222222 1111 1111 1111 1 33333333333333333333 22222 11111
lowQualScore : 3 999999999 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 77 11 555555 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 44444444444444444444 55 55 44 4 4 777 66666 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . ......... .... ... ...... .. . ... . . . . .... . . .. .. ...... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... .. .. .. . . ... ..... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 888888888 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 00 88 999999 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 00000000000000000000 44 55 55 0 0 888 00000 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACATT---------TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAAT-TA-ATTC-GTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATATT-T-------TG--------GT-ATCA--TTTCCG-GTACGGTTTA---GGTAT-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAAT-AA---TCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-T-------GGA-------GT-GTCA--CTT-TG-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAAT-AA---TCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAAT-------TG---------T-CTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAA--AT-AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-T-------TG--------GTAATCA--TTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACATG-------A---GATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAAT-AA---TCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-T-------TGG-------TT-ATCA--TTT-CGAGTA-GGTTT----GGTAT-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATAT-AA---TCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-T-------TTG-------GT-ATCATTTTT-CG-GTA-GGTTTA---GGTAT-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACATTC------ACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAATAAA-AATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-TG-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACATTG------ATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAAT----AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATAT------------A-------G----------T-TG-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGT-GTCA--TTT-TG-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT--------------AT-AATAATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG----------GA-------GT-GTTA--TTT-GG-GTA-GGTTTA---GGTAgt
blockSeqs : A CACATTCAT CGTG AA GATCTC CG A AAG C T . A CCCA T CA CA AAAAA T AT T T . A G T ATGC T TGTA A TTAA A . T GA G T ACCAGATACTGACATAGTA AA TT T A . CTA GAT TAAA A GGA A TA CATTC C . CA A . A C
blockSeqs : A CAC . G . . . . . . . . . . T CA AATAA . . C . . . A . CA . . A . G . . . . . ATGGA G . T . . . GAT . . . . . . . . . . . . .
blockSeqs : . GAT . G . . . . . . . . . . A TG ATAA . . C . . . T . AA . . T . . . . . . . AATTG C . C . . . GAT . . . . . . . . . . . . .
blockSeqs : AT . G . . . . . . . . . . A CG AA . . C . . . A . CT . . A . . . . . . . GTTGG A . C . . . TC . . . . . . . . . . . . .
blockSeqs : A . G . . . . . . . . . . A CA AA . . C . . . A . TT . . T . . . . . . . GTTTG A . C . . . TC . . . . . . . . . . . . .
blockSeqs : . A . . . . . . . . . C CA AA . . C . . . G . CT . . A . . . . . . . GTTGA G . T . . . TC . . . . . . . . . . . . .
blockSeqs : . . . . . C G AA . . C . . . G . T . . A . . . . . . . GTTG G . T . . . . . . . . . . . . . . . . .
blockSeqs : . . AA . . C . . . A . C . . . . . GGA G . T . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . T . . A . . G . . . . . . . . . .
blockSeqs : . . . . .
blockSeqCons : CAT****** G** AA**** ** C* G** **** GTTGG*************** T* TC*** ** **
originalCons : GATACTATCTAGTGCATTACATT-------ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAAT-AA-AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-T-------TGA-------GT-GTCA--TTT-CG-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
finalCons : GATACTATCTAGTGCATTACATTCAT------TAGATCCACCC----GTG--CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAATAA----TCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CCG--TAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATGTTGG---------------GT-GTCA--TTTT-G-GTA-GGTTTA---GGTATC---TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Alignments
lowQualScore : 3333333333 1111 111111 111 1111 1111 1111 1111 1 33333333333333333333 22222 11111
lowQualScore : 3 3333333333 2222 888 666666 77 5 111 5 5 5 5 0000 5 0 99 11 88888 4 99 44 3 3 3 999 4 1111 4 3333 2 0000 0 5 5 66 4 4 22222222222222222222 1 7777 4 4 777 66666 9999 4 777 4 66 00000 4 55 55 4 55 4 4
lowQualScore : . .......... .... ... ...... .. . ... . . . . .... . . .. .. ..... . .. .. . . . ... . .... . .... . .... . . . .. . . .................... . .... . . ... ..... .... . ... . .. ..... . .. .. . .. . .
lowQualScore : 2 7777777777 1111 333 444444 99 7 777 7 0 0 0 6666 0 1 88 88 44444 0 55 22 6 6 6 111 4 2222 4 9999 2 6666 0 0 0 99 0 0 33333333333333333333 4 4444 0 0 888 00000 4444 4 888 4 11 00000 0 55 55 0 55 0 0
consensus : GATACTATCTAGTGCATTACAT------T-ATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAA-T---AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-TTGG--------------GTGTCATTT-C--G-GTA-GGTTTA---GGTATAC--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
Reference ( family-2571 ) : GATACTATCTAGTGCATTACAT------TCATTAGATCCACCC----GT-G-CG------T--TTTAA-GCGTA---GCAAAGCTC-T-GCAAAGGGAAAT-AA-CTC----AGATT-GACATN-TCGAAA-T---AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GTAA-CCAATCT--TT-GT----AAAATTT----GA-T-AT-GTG--AGTAGATGACA-C-TTATAGGAACATATG-TTGG--------------GTGTCATTT-T--G-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGGGGTACCC
gi|1 : CATTACAT------T---TAGATCCACCC----GTCA-CG------T--TTTAA--CGTA---GCAAAGCTC-T-GCAAAGGGAAATAAA-CTC----AGATT-GACATA-TCAAAATT---AATTCGTTTT-AT-TGGCCACAAATTT-CTCTCAAA-CCATATAG-CCAATCT--TT-GTA---AAAATTT----GA-TCAT-GTG--AGTAGATGACA-C-TTATAGGGACATAT--TTTG--------------GTATCATTTCC--G-GTACGGTTTA---GGTAT-TCATTTCGG----TAATTT-A-AG---C-AT--CATTTC-----G-GTTAAAATCACC--CTT-AATT-TCCGGTAATT-CGGGTTACC
gi|10 : attcatttggactcaaaataaatattaacaaaatgacccacactcttagtgcagttacattagtcatattacgggcaagatACT-TCAAAA-T---AATCGGTTTT-A--TGGTTTT-AACTT-CT-TCAAA-CA--GCAA-CCGATCA--TT-GT----CAAATTT----AA-T-AC-GCG--AGTAAATGATA-T-TTATAGGAACATACA-TGGA--------------GTGTCACTT-T--G-GTA-G
gi|11 : GATACTATTTAATGCATTACATTCACATTCATTAGATCCACCC----AT-G-CA------T--TTTAA-Ga
gi|11 : tAGATGACA-T-TTACAGGAACACATatgacatttacaggaacacataccagatactgac
gi|12 : tgatactatttaatgcattacattcacattcattagatccacccatgcattttaATTTC-----G-GT--AAATCAAG--CGT-A--T-TTCGGTAATT-CTAGCTACCCaccagatactgac
gi|13 : gtattttctgggggt---T-GT--CATTTC-----A-GT--AAATCAAC--GTC-A--T-TTCGGTAATT-TGGGGTACCCcattgacaatacat
gi|14 : atagtattagtgtgac-GCAAAGGGAAAT-AA-CTC----AGATT-GACATA-T-G---------------TTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--ATAaagaata
gi|15 : AAA-T---AATCGGTTTT-A--TGGCTGC-AACTT-CT-TCAAA-CC--TTAA-CCTATAA--TT-GT----AAAAT
gi|16 : taTAGGAACATATAATTG----------------TCTCATTT-T--G-GTA-GGTTTA---GGTAGAT--TTTCGA----TAATTT-AT
gi|17 : ----TAATTT-ATAG---T-AT--CATTTC-----G-GT--AAATCACC--TTC-A--T-TTCGGTAATT-CGAGGTAC
gi|2 : ATTACA---------ATTAGATCCACCC----GT-AACG------T--TTTAA-GCGTA---GAAAAGCTCCT-GCAAAGGGAAAT-AA-CTTCCCAAGATT-GACATA-TCAAAAAT---AATCGGTTTT-AATTGCCCA--AACTT-CT-TCAAA-CC--ATAA-GCAATCT--TTTGT----AAATTTT----GAAT-ATTGTG--AGTAGATGACA-C-TTATAGGAACGCATG-TTGG--------------TAATCATTT-C--G-GTA-GGTTTA---GGTAT-C--TTTCGG----TAATTT-ATAG---TAAT--CATTTC-----G-GT--AAATCACCCACTC-A--T-TTCGGTAATTCCGAGGTA
gi|3 : ttagatcacattctagtgcattacatatagttcatattgacgggaagatcaACACT-TCTAGTGCATTACAT------G----AGATCCACCC----GT-G-CG------T--TTTAAAGCGTA---GCAAAGCTC-T-GCAAGGGAATAT-AAACTC----AGATT-G-CATA-TTGAAA-T---AATCGGTTT--A--TGGCCAC-AACTTTCT-TCAAAACC--ATAATCCAAT-T--TT-GT----AAA-TTT----GA-T-AT-GTGGAAGTAGATGACAGC-TTATAGGGACATA-G-TTGG--------------TTATCATTT-C--GAGTA-GGTTT----GGTAT-C--CATCG-----TATTTT-ATAGGGAT-AT--CATTTCCATTCG-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGAGGTACC
gi|4 : ttcaattggaagttctaaaaaatctaacaaattatgaccAGATCCACCCCGTGGT-G-CGGATCTCTCGTTAAA-GCGTAAAGGCAAAGCTT-TTGCCAAGG-AAAT-AA-C-C----AAATTTGACATCATCGATA-T---AATCGGTTTTTA--TGGCCAC-GA---------GGA-C------A-TCAATTT--TT-GTTGTAAAAATTT----GAGT-AT-GTG--AGTAGATGA-A-C-TTAT-GGGACATATG-TTTG--------------GTATCATTT-TTCG-GTA-GGTTTA---GGTAT-C--TTTCGGTAAATAATTTAATAG---T-AT--CATTTC-----GCGT--AAATCACC--CTCAA--TATTCGGTTATT-CGGGTTACCC
gi|5 : ttagactatatccttattgaacatatatttagggaGATACTATCTAGTGCATTACAT------TCACTAGATCCACCC----AT-G-CG------T--TTTAA-GCATA---GCAGAGCTC-T-TCAAAGGGAAAT-AA-CTC----AGATT-GACACC-TCAAAA-TAAAAATTGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-TC--GTAA-CCAATCT--TT-GT----AAATCTTTTAAAA-T-AT-GTA--AGTAGATAACA-C-TTATAGGAACATATG-TTGA--------------GTGTCATTT-T--G-GTA-GGTTTA---GGTAGAT--TTTTGG----TAATCT-ATAG---T-AT--CATTTT-----G-GT--AAATCACC--ATC-T--T-TTCAGTAATT-CAGGGTACCC
gi|6 : ATACTATCTAATGCATTACAT------TGATTAGATCCACCC----AT-A-TG------T--TTTAA-GTGTA---GAAGAGCTC-T-GCAAAAGGAAAT-AA-CTC----AGATT-GACACC-ACAAAA-T---AATCGGTTTT-A--TGGCCAC-AACTT-CT-TCAAA-CC--GT
gi|7 : actcatttgtatttcctcaaaatgaaaaaaatgaacaagctgactaacactatccttttaAC-CACTT-CT-TCAAA-CC--ATAA-TCAATATGCTG-GT----AAAATTT----GA-T-AT-GTG---GTAGATGACA-CTTTATAGGGACATATA---G-----------------------T-T--G-GTA---TCTA------------TTTC-G----TAATTT-ATAG---T-ATTACATTTC-----G-GT--AAATCACC--CTC-A--T-TTCGGTAATT-CGG
gi|8 : AGATGACA-T-TTACAGGAACACATA-CCAGATACTGACATAGTAGTGTCATTT-T--G-GTA-GGTTTACTAGGTAGAT--TTTCTG----TAATTT-ATAG---T-GT--CATTTT-----G-GT--AAGTTACT--GTC-A--T-TTCGGTAATA-CGGGGTACCCttaa
gi|9 : AGCTT-T-GCAAAGGGAAAT-AA-CTT----AGAT-----AT------AA-T---AATCGGTCTC-A--AGACCA--------CT-TCAAA-CC--TTAA-CCAATC---TT-AT----AATATTT----GA-T-AA-GCG--AGTAGATGACA-C------------TATG---GA--------------GTGTTATTT-G--G-GTA-GGTTTA---GGTAgt