lowQualScore : 22222222222222222222222222222222222222222222222222222222222 111111111111111111111111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111
lowQualScore : 22 11 333333 2 2 777777777777777 22 77777777777 1 44444 1 66666666666666666666666666666666666666 4 4 4 6666 66666666666666666666666666666666666666666666666666666666666 2 22 444 1 333 444444 33 1 444 1 11 3333 55555555555 33 2 11 1 2 2 4 555555 5555555555 333 2 2 333 222 1 11 2222222 111111111111111111111111111 1 11 2 1 222 11 111 1 88888888888 22 2222 1 2222222 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 1111 111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3333 1 1 00000000000000000000 111 44444 11 4
lowQualScore : 6 77 88 2 555555 2 4 0 0 666666666666666 77 3 4 88888888888 5 2 55555 6 88888888888888888888888888888888888888 0 0 0 6 0000 44444444444444444444444444444444444444444444444444444444444 0 6 66 4 4 6 666 6 5 6 888 3 222222 3 00 3 888 6 3 88 6666 44444444444 3 00 2 0 88 5 0 0 6 0 6 777777 9999999999 6 000 0 0 111 2 222 5 33 8888888 888888888888888888888888888 0 33 1 0 8 777 33 0 0 666 2 6 0 77777777777 0 0 66 22 4 4 4 0000 2 2 9999999 4 777 66 6666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 444 2 2222 2 2 2 2 888 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 5555 0 5 5 8 2 22222222222222222222 000 3 66666 99 0 2 4 6
lowQualScore : . .. .. . ...... . . . . ............... .. . . ........... . . ..... . ...................................... . . . . .... ........................................................... . . .. . . . ... . . . ... . ...... . .. . ... . . .. .... ........... . .. . . .. . . . . . . ...... .......... . ... . . ... . ... . .. ....... ........................... . .. . . . ... .. . . ... . . . ........... . . .. .. . . . .... . . ....... . ... .. .......................................................................................................... ... . .... . . . . ... . ........................................................................................................................................................................................................................................................................................................................................................................... .... . . . . . .................... ... . ..... .. . . . .
lowQualScore : 0 55 00 5 000000 5 0 0 0 000000000000000 55 0 0 55555555555 0 5 00000 0 00000000000000000000000000000000000000 0 0 0 0 0000 00000000000000000000000000000000000000000000000000000000000 0 0 00 0 0 0 000 0 5 0 000 0 000000 0 55 3 777 7 3 33 0000 22222222222 0 00 5 0 55 5 0 0 0 0 0 555555 5555555555 0 000 0 0 000 5 000 5 33 7777777 000000000000000000000000000 0 88 8 0 8 555 22 8 8 444 0 0 0 88888888888 3 4 99 77 4 4 4 6666 4 8 9999999 4 888 11 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 777 7 9999 5 5 5 5 222 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 0 0 0 0 8 00000000000000000000 222 2 00000 77 0 5 0 0
consensus : NGTGCTGTGAATGGATCCTTCGTTGCNATNTGCTGTGCATCTNGTCCACTGNTGTAATCAGTGGGGTCCCCGCAAGTAA-ATAAGTAATTCTAGGCGCACNGACNACGGCCTANNTAAACTTNAAACTGACTTTATCGAGGCACCCGGCNCATGTAAGATTACAACATCAGCAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAA-AATA-TGCACAC----ACTTTAATAACAAGAAGTGC-CAAGCGTTGTAAATTACATTCAACGTGATATNANGATAA-AGTTCTTCTTAGCAGAANACTNGAACATTGG-TTNACCNTC-ATAGAGCATTTTTTTAC-GTNAT-TTTTTTTTT--ATTTTATTA-T-TTTTTTTG--G-------NTANACCTAGATCCGGCGCCGTAAACTGCGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTTATATGAAGTTTACAAGGATNTTAGAACCTCTTGTAACATTATTNGTCAAACTGAAAGGGAGGGGGGGGG-CGA-A-ATACCCCC-C--------TTT-----AA-----AGAAAGTGGA-GAA--GGGGGGG-GGGGG---TAAAAT-AAAAAACACACACCNANAAAAAAAAAGAATAGT-CCAG-A---G-TTTTTTCATCGTATGT--TAT-AT-CATA-TGTT-CAAAATTT--TTATATGTT----TATCAT-ATG---TTTAAC--ATA-TG-TAAA------CAT----G-A-TT--TTT---TCA-CACTTA-TGTT---AA-CA-T---A-TGTTTGA-AAGTTGTGG-----CATA--TGT-N-GAA-T-T---ATGTT-T---GAA-A-CA-TA-TGTTNAACATATG-----TTN--A---------A-AACA----ATA-G----TA-T-C--AC-C-A-T--A-TG--------------AT--G--A--A----AA---T---C--AT--------GT--TA-----AACAT----T--G------TTCA---------C--AT-G--T-TTTCA-AA-CAT--A-G-----TG-TT------A-A-CA--TATGNT---CA---A-T--TNCA-----A-A---------C----AT---ATGTT----T--A-AC-ATTA---AG--------GT-GAAAAA-A-T-C----ATGTTTAA--CATATG-TT-AACA-TATTGGT-GAGATNTTTG-GTGTGTGT-TTTTATTTTAACCCCC-CCCCCCCCCTTC-TCCACTTTTC----A------AAAAAG-GGGGGGGAGNTATTTTG--CCCCCCCCN-CCTTTTCGG-TTGACNAANATGTTACAAA
Reference ( gi|2 ) : CGTGCTGCGAAT--ATTCTTCATTGCAA-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGT-CC-GCTAGGAATTTAAGT--TTCTAGGCG--CTGACTATG---TAGT--AACTTCAAA--G--TTTATCTAGGCAC-AGGCAC-TGTA-G-T--CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA--CTTTAACAATACTACACATCGATGCTTTAATA--------TGCACACAC--------TTACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGAAG--TAGAAC-TTGGCTTTAC-GTC-ATAGAGCATTTTTTTTTGGTCAT-TTTTTTTTT--ATTTTATT--T-TTTTTTTG--G-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAG-TTTTGC-AAAAGAAGGAGAATTTAG-TTATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGG-CTTTAGAA-CTC-TGTAACA-T-TTGGTCAAACTGAAAGGGAGGGGGGGGGCCAA-A-AGATCCCCAC--------TTT-----AAA----AAAAAGTGGA-GAA--GGTGGGG-GGAGG---TAAAAT-AAAAAACACACACCAAAAAAAAAAAAAAACAAT-C----A---TTTTTTTTCATTATATGT--TAT-AT-CATA-TGTT-CAAAATCT--TTATATTTT---ATATCAT-ATG---TTTAAC--ATA-TG-TAAA------CAT----G-A-TT--TTT---TCA-CACTTA-TGTT---AA-CA-T---A-TGTTTGA-AAGTTGTGGC----CATA--TGT-G-GAA-T-T---ATGTT-T---GAA-A-CA-TA-TGGTGAACATATG-----TTG--A--------TA-AACA----ATA-G----TA-T-C--AC-C-A-T--A-TG--------------AT--G--A--G----AA---T---C--AT--------GT--TA-----AACAT----T--G------TTCA-----C---C--AT-G--T-TTTCA-AA-CATC-A-G-----TG-TT------A-A-CA--TATGGC---CA---A-T--TACA-----A-A---------C----AT---ATGTT----T--A-AC-ATTA---AG--------GT-GAAAAA-A-T-C----ATGTTTAA--CATATG-TT-AGCA-TATTGATAAAGATGCTTGTGTGTGTGT-TTTTATTTT---CCCC-CCCCTCACCTTC-TCCACCTTTTTCATA------AAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAGA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGT-CCCGC-AGTAA----AGT--TTCTAGGCA--CGGACAACGGCCTACTTAAACTTCAAA--G--TTTATCAAGGCACCAGGCTCATGTAAG-T--CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAA-AATA-TGCACAC----ACTTTAATAACAAGAAGTGC-CAAGCGTTGTAAATTACAT-CAACGTGATATTAAGATAA-AGTTCTTTT-AGCAGAAA--TAGAACATTGG-TTGAC-CTC-ATAGAGCATTCTTTTAC-GTAAT-TTTTCTTAA--ATTTTATA--T-ATTTTTTG--GTAGGGGCCTAGACCTAGATCC-GCGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAAGA-TATTAGAACCTCTTGTAACATT-TTTGTC-AACTGAAAAGGAGGGGGGGG--CAA-ATATCCCCCCAC--------TTT------------AAAAAGTGGA-GAA--GG-GGTG-TGTGT---TAAAA--ACAAAACACACAAACACAAAAAAAAAGAACAGT-CCAG-A------TTTTTCATTTAATGT--TA--AT-CATA-TGTT-AAAAAT-T--TTATATGTT----TATCAT-ATG---TTTAAC--ATA-TGTTAAA------CAT------A-TGAATTT---TCA-C-CATAGTGTT---AA-CA-T---ATTGTTTGA-TAGT--TGGC----CATA--TGT-T-AAACT-T---ATCTT-T---GAA-A-CATTATTGGT--ACATATG-----TTC--A---------A-AAC-----ATA------TA-T-C--AC-CAA-T--A-TG--------------AT--G--A--GAA--AA---T---CATAT--------GT--TA-----AACATA---T--G------TTCA------------AT-------------A-CATA-T-G-----T--TT------A-A-CA--TATGTA---TAT--A-T--TACA-----A-C---------A----AT---ATGGT----A--A-AC-AT
gi|9 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatCTGTGAATGGATC--TCATT--AA-ATACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCC-GCAAGTAA-ATAAATAATTCTAGGCGCACTGACTACA----AGG--AA-TTAAAACTGACTTTATTGAGACAT-CAACAC-T-TA-GATTACAACATCAGCAAAAat
gi|6 : AT--------TTACATTCAACG-GATATAATGATA---GTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGGCGGTATTTTTTTTT--ATTTTATTA-TATTTATTTG--G-------
gi|11 : tttaattttttaaaattggcacaccccctttattaacacagaattactccaaagcggtgtaaTC-ATAGAGCATTTTTAC---GTCAT-TTTTTTTTTTTATTTTATTATT-TTTTTTTGTTG-------GTATACCTAGATCTG-CGCGGTAAACT-CGGAGTAAAA-AAAG-TTTTGC-AAAAGAAGGAt
gi|3 : TATA------TATAATTACA-TTATATGAAGTTTACAAAGATTTTAGAA-CTT-TGTAACA-TATTGGTCAA-CTGAAAGGG-GTGAGGGGGCAAATA-ACACCCCC-C--------TTTTTATCAAGTGCGAGAAAATGGA-GGT--GGGGGGG-GGGGGGGTTAAAAT-AAAA-ACACACACC---AAAAAAAAAAAATAGT-CCAGGA-----TTTTTTCATCATATGT--TA--AT-CATA-TGTT-CAAAATTT--TTATATGTT----TATCAT-ATG---TTTAAC--ATA-TGTTAAA------CATA---G-A-AT--TTT---T---CACTTATTGTTA--AA-CA-T---A--GTT--G-AAGT--TGGT----CATA--TGT-T-AAACT-T---ATGTT-TTTGAAA-A-CA-TA-TGGTGAGCATATA-----TTC--A---------A-AAC------TT-A----TATT-C--ACGC-A-T--A-TG--------------AT--G--A--G----AA---
gi|12 : GGGGGGGGGGCGA-A-ATACCCCCCCCCCTCTTTTTT-----AA-------AAAGTGGA-GAAAGGGAGGGGTGGGGGT--TAGAAT-AAAAAA-AAACACTAAAAAAAAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|14 : AAAGTGGAAGAA--GGGGGGG-GGGGG---TAAAATAAAAAAACAC-CCCCCCCAAAAAAAAAGAATAGTCC----A---GGATTTTTCATCATATGT--TA--AT-CATA-TGTT-CAAtagtccaggattttt
gi|13 : AAAAACACACACCAAAAAATAAAAAAAATCGT-C----AAGGATTTTTTTCGCTCTATGT--TTTAAT-CATG-TGTT-CAACATTT--TTACATGTT----TATCAT-ATG---TTTAAC--ATA-T
gi|4 : tTTGCATCATATGT--TA--AT-CACA-TGTT-TAAA-TTT--TTACATGTC----TATCAT-ATG---TTTAAC--ATG-C--TAAA------CATACATG-A-CT--TTT---TCA--GCTTG-TGTT---AAACT-T---A-TCTAT-A-AATTCGT---------TA--T-T-C-CAA-A-C---ATGTT-T---CAA-A-CA-TA-TTCTAAACA-ACC-----TT------------TA-A--A----ATACA----TA-TCC--AC-C-A-A--A-TT--------------AT--GACA--A----AA---T---C--AT--------ATGATA-----AACAT------------------------------AT-A--A-ATTCC-AA-TATCTA-GTCACATG-TTA-----A-A-CA--TATG
gi|1 : ATTGT-TGTAATAT-ATACATA-TGTT-AAACAT------ATGTATT---GAA-CAT-ATG---TTTAAC--AT----------------AT----G-A-TT--TTC---TCATCA--TATTGGT---GA-TA-T---A-TGTTT---------TGAA----CATA--TGT-ACCAA-T-A---ATGTT-T---CAA-A-GA-TA-AGTTTAACATATGGCCAACTA--T--------CA-AACA----ATA------TG-T-T--AA-C-ACT--A-TG--------------GT--G--A--A----AA---TTCAT--AT--------GT--TT-----AACAT------------------------------AT-G--T-T---A-AA-CAT----A-----TGATA------A-A-CA--TATAA-----A---A-T--TTTT-----A-A---------C----AT---ATGAT----T--A-AC-ATTA---A---------AT-G-AAAA-A-T-C-----TG---GA--C---TG-TT---C--TTTT--------TTTTTGTGTTTGTGTGTTTTGTTTT---TAAC-ACACACCCCTTC-TCCACTTTTT-------------AAAG-TGGGGGGA--TATTT---GCCCCCCCCT-CCTTTTCAG-TTGACAAAAATGTTACAatatgttgctattttacctgcgtatgtaacagtactttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|8 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatgtgctgtgaatattcttagttgctatctgttgtgcatttcgtccactgatgtaatcagtggggtcccgcagtaaagtttctaggcacggacaacggcctacttaaacttcaaagtttatcaaggcaccaggctcatgtaagtcaacacaaaacttacgttcttaggcatctagcgtcaccatgacgtcacacaaacctctcagtacgcaagaggccgatctaataatttttaaaatatgcacacactttaataacaagaagtgccaagcgttgtaaattacatcaacgtgatattaagataaagttcttttagcagaaatagaacattggttgacctcatagagcattcttttacgtaatttttcttaaattttatatattttttggtaggggcctagacctagatccgcgccataaactgcggagaaaaaaagtttttgcaaaaagaaggaggatttagtttataaataattatacttatagttatgtatgattacagttagtttacaagatattagaacctctATCATTCGT--TA--AC-CATA-TGTT-CAAAATTG--TTATATGTT---------T-ATG---T--------------TAAA------CAT----GTA-TT--TTT-----A-AAC-----------AA-CA-T---G-TGCTGGACAAGTT-T-------------------GAA-C-T---ATGCTGT---AAG-G-CA-TA-TGTTCAACATATG-----TTA--A---------A-AACA----atggtaaacatat
gi|5 : ATGT---AT--T-CATACTGTTTCAAAA-AT--TTA-ACTAT---GTATCATCATGGATCTTAACCAATAATG-TTAAGCATACCAT----G-AACT--TTT---TCA-C-CTTA-TGCTTAAAA-CA-TCCGA-TGTTTGG-AAGTTG--GT----CATACATGT-T-AAACT-T---ATATT-T---GAA-A-CA-TA-GGTTGAACATATG-----TTC--A---------A-AAC-----ATA------TA-T-T--AC-C-A-T--AGTG--------------ATC-G--A--GA---AA---T---CATAT--------GT--TA-----AACA----------------------------C--AT-A--T-TTT---AA-CATtgtgtttaaaatggtgggatgagaatacacaaaaaacacacatatgt
gi|4 : cAT-AT-CATA-TGTT-TAACATGTGACTAGATATTGGAAT-TTAT-ATG---TTTATC--AT----------------AT----G-A-TT--TTG---TCA-TAATTT-GGTG---GA-TA-T---G-TATTTTA-AAG--GT---------TG--TTT-A-GAA---T---ATGTT-T---GAA-A-CA-TG-TTTGGAATA-ACGAA---TTT--A--------TA-GATA------A-G----T--T-T--AA-C-A-C--A-AG--------------CT--G--A--A----AAAG-T---C--AT--------G---TA--------------T--G------TTTA-----G---C--AT-G--T-T---A-AA-CAT----A-----TG-AT------AGA-CA--TGTAA----AA---A-T--T-TA-----A-A---------C----AT---GTGAT----T--A-AC-ATa
gi|5 : ttgcatcatTATGTT---AAAATAT-GTG---TTTAAC--AT----------------AT----G-A-TT--TCTCGATCA-C---TA-TGGT---AA-TA-T---A-TGTTT---------TGAA----CATA--TGT-T-CAACC-T---ATGTT-T---CAA-A-TA-TA-AGTTTAACATGTA------TG--ACCAACTTCCA-AACATCGGATG-T----TT-T-A--AG-C-A-T--A-AG--------------GT--G--A--A----AAAGTT---C--AT--------GG--TATGCTTAACAT----T--A------TTgttgctattttacctgcgtatgtaacagtactttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|3 : catgtattcatactgtttcaaaaatttaactatgtatcatcatggatcttaacc------CAG----G-A-TT--TTT---TCATCA--TA-TGTT---AATCA-T---A-TGTTCAA-AATTTTT--------ATA--TGT-------T-T---AT--------------CA-TA-TGTTTAACATATG-----T-------------TA-AAC-----ATA-GAATTTT-T-C--AC-T---T--A-T----------------T--G--T--T----AA---A---C--ATA-------GT--TG-----AA-GT----T--G------GTCA---------T--AT-G--T-T---A-AA-C-TT-A-------TG-TTTTTGAAA-A-CA--TATGGTGAGCATATA-T--TCAA-----A-A---------C----TT---ATATT----C--ACGC-A-TA---TG--------AT-GAGAAA-
gi|7 : tatatataattacattatatgaagtttacaaagattttagaactttgtaacatattggtcaactgaaaggggtgagggggcaaataacacccccctttttatcaagtgcgagaaaatggaggtggggggggggggggttaaaataaaaacacacaccaaaaaaaaaaaatagtcTT---TAA-AACATA-TGTT---AA-AAAT---G-TGCTTGA-AATCAGTTGCTTTACATA--TGTTG-AAA-T-C---A-ATA-T---GAATA-CA-TA-TGGT--------------TTG--A--------AA-AGCA-----TA------TG-T-T--AC-C--------TG--------------AT--G--C------------T---C--GTTTTTATTAGT--TA-----AACATA---T--G------TTCG-----AAGAC--ATAG--T-TCTCTTAA-CAT----A-----TG-TTG-----A-A-CA--TATG-----C------T--TA-------A-A---------C----AT---ATGTT----tnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|4 : tagT---AT-CA-T---A-TGTTTAA-CA--TGTGAC----TAGA--TATTG-GAA-T-TTATATGTT-T-----A-T-CA-TA-TG--------ATT-----TTG----------------------------------T-C--AT-A-A-T--T-TG--------------GT--G--G--A----TA---TG--T--AT--------TT--TA-----AAGGT----T--G------TTTA-----G---A--AT-A--TGTTTGA-AA-CAT----G-----T--TT------G-G-AA--TA--AC---GA---A-T--T-TA-----T-A---------G----AT---AAGTT----T--A-AC-AC-A---AG--------CT-GAAAAA-G-T-CATGTATGTTTAG--C--ATG-TTAAACA-TA-TGATAGACATG
gi|3 : ttgcatcatatgttaatcacatgtttaaattttta----CATA--TGC-GTGAA-TAT---AAGTT-T---TGA-A-TA-TA-TGCTCACCATATG-----TTTTCA--------AA-AACA----TAA-G----T--T-T--AA-C-A-T--A-TG--------------AC--C--A--ACTTCAA---C---T--AT--------GT--TT-----AACAA----TAAG------TGAAAAATTC---T--AT-G--T-TT----AA-CAT----A-----TG-TT------A-AACA--TATGAT---AA---A-CA-TATA-----A-AAATTTTGAAC----AT---ATGAT----T--A-AC-A-TA---TG--------AT-GAAAAA-A-T-C----CTG---GA--C-TATT-TT------T-TT--------TTTTTG-GTGTGTGT-TTTTATTTTAACCCCC-CCCCCCCCCACC-TCCA-TTTTCTCGCACTTGATAAAAAG---GGGGGTGTTA-TTTG---CCCCCTCACCCCTTTCAG-TTGACCAATATGTTACAAtgttgctattttacctgcgtatgtaacagtactttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|7 : tatatataattacattatatgaagtttacaaagattttagaac----CATA--TGTTA-AAA-A-T---GTGCT-T---GAA-ATCA-GT-TGCTTTACATATG-----TTG--A---------A-ATCA----ATATG----AA-T----AC---A-T--A-TG--------------GTTTG--A--A----AA---G---C--ATAT------GT--TA-------CCTGA--T--G------CTC----------------G--T-TTTTA------TT-A-G-----T--TA------A-A-CA--TATGTT---CG---A-------A-----G-A---------C----AT---A-GTTCTCTT--A-AC-AT-A---TG--------TT-GAACA------T----ATGCTTAAA-CATATG-TT-atgagaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : tagtttaaaa-T---ATGTT-----AAA-A-TA-TG-TGTTTAACATATGATTTCTCG--A--------T--CACT----ATG-G----TA-----------A-T--A-T---------------AT--G-----------------------T--------TT--TG-----AACATA---T--G------TTCAAC---C---T--AT-G----TTTCA-AA-TATA-A-G-----T--TT------A-A-CATGTATGAC---CA---ACT--TCCA-----A-A---------C----ATCGGATGTT----TTAA-GC-A-TA---AG--------GT-GAAAAA-GTT-C----ATG--------GTATGCTT-AACATTATTGGTTAAGAT
gi|7 : catgtattcatactgtttcaaaaatttaactatgtatcatcatgg-T---ATGTT-T----AA-G-CA-TA-TGTTCAACATATG-----TTA--A--------GAGAACT----AT--G----TC-T-TCGAA-C-A-T--A-TGTTTAACTAATAAAAAC--G--A--G----CA---T---C--AG--------GT---------AACAT------------------------------AT-GC-T-TTTCA-AACCATA-T-G-----TA-TT----------CA--TATTG---------A-T--TTC------A-A---------C----AT---ATGTA----A--A-GCAACTG---AT--------TT-CAAGCA-----C----ATTTTTAA--CATATG-TT-
gi|15 : tagtttaaAA-A-CA-TG-T--TAAACATACA-----TTC--A---------A-AACA----AAT-G----C--T-C--AA-A-A-T--A-TG--------------AT--G--ATAA----AA---T---CGTAT--------GT--TA-----AACAT----G--T------TTCA-----tgtt
gi|5 : -AACT----AT--G----TA-T-C--AT-C-A-TGGA-TC--------------TT--A--A--CC---AA---T---A--AT--------GT--TA-----AGCATACCAT--GAACTTTTTCA-----C---CTTAT-G--C-TT-AA-AA-CATC-C-GA----TG-TTTGG---A-A--G--T-TGGT---CA--------TACATGTTAA-A---------C----TT---ATATT----TGAA-AC-AT-----AG--------GTTGAACA------T----ATGTTCAAAACATATA-TT-ACCA-TAGTGATCGAGAa
gi|8 : catgtattcatactgtttcaaaaattt--AC-C-A-T--A-TG--------------TT--C--A--A----AA---T-------T--------GT--TA-----TATGTTTA-T--G------TTAA-----A---C--AT-GTAT-TTTTA-AA-CAAC-ATG-----TG-CTG-----G-A-CAAGTTTGAA---CT---A-TGCTGTA-----AGG---------C----AT---ATGTT----C--A-AC-AT-----AT--------GT-TAAAAACA-T------GTGTTTAA--AATaatcatatgttaaacacatattttaacata
gi|8 : atcattcgttaA---C---C--AT--------TT--TA-----AACA----------------------------C--AT-G--T-TTTT--AA-CAT----A-----TG-TTG-----A-A-CA--TAT-GC---C------T--TAC------A-G---------C----AT---A-GTT----C--A-AA-CTTGTCCAGCACATGTTGT-TTAAAA-A-TAC----ATGTTTAA--CATA------AACA-TATggtgggatgagaatacacaaaaaacacacatatgt
gi|3 : atcattcgttaaccatatgttcaaaattgttA-----AAAAT----A--G------TCCA-----G---G--AT-T--T-TTTCA------TC-ATA-----TG-TT------A-ATCA--TATGTT---CA---A-------------A-A---------TTTTTAT---ATGTT----T--A-TC-AT----------------------------------ATGTTTAA--CATATG-TTAAACA-TAgggatgagaatacacaaaaaacacacatatgt
gi|14 : tatatataattacattatatgaagtttacaaagattttagaactttgtaacatattggtcaactgaaaggggtgagggggcaaataacacccccctttttatcaagtgcgagaaaatggaggtggggggggggggggttaaaataaaaacacacaccaaaaaaa-----A-A---------C----AT---ATGAT----T--A-AC-A-TA---TG--------AT-G-AAAA-A-T-C----CTG---GA--C-TATT-CT-TTTT-TTTTGGGGGGGGTGTTT-----------TTTTATTTT---ACCC-CCCCCCCCCTTCTTCCACTTTgaatttttcacttattgttaaacatagttgaagttggtcatatgttaaacttatgtttttgaaaacatatggtgagcatatattcaaaacttatattcacgcatatgatgagaaatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|12 : GTGTTTTT-TTTTATTCTAACCCCCACCCCTCCCTTTC-TCCACTTTTT----A------AAAAAGAGGGGGGGGGGTATTTCGCCCCCCCCCCcaa
gi|16 : C-CCCACCTTTC-------------GAAG-G-GGGGGAGACATTTT----TCCCCCCCACCTTTTCGGtaaaaaaaatagtccaggattttt
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA
Alignments
lowQualScore : 33 111111 33 33333333 111 444444444 55555 222 55555555555 3333 22 2 1 2 2 2 22 1 1 44444444 222222222 33333 11 1 11 2 22 1 333 1 2222 1 11111111 1111 33333333333 2 2 1 111111 22 1 1 11111 33 11 333333 333 55555555555555 1 1 111 11 111 111 1111 22 1111 22222222222 111111111 11 1 222 11111 3333333 222 111 2222222222 111 22222 22 77777777777777777777777 222222 1111111111111111 222222 222 2 44 2 222 2 11 11 11111 3333 222
lowQualScore : 00 77 0 888888 0 0 0 1 1 88 7 55555555 222 1 1 222222222 7 1 00000 3 555 1 11111111111 3333 77 0 5 0 0 0 22 3 3 00000000 000000000 22222 33 3 44 3 1 1 00 2 111 1 7 3 1 1111 3 0 55555555 3 4444 77777777777 1 3 6 3 7 6 7 7 7 5 888888 0 22 7 2 4 66666 11 1 7 7 44 111111 4 0 666 99999999999999 0 0 2 0 777 33 0 0 333 5 999 6 5555 66 5 5 1 5 5 55 5 77 8888 44444444444 333333333 2 22 3 3 555 11111 44 5 0 8888888 77 0 33 333 5 000 5 6 0 1 5 1 5 8888888888 222 5 77777 5 77 99 99 33333333333333333333333 0 0 99999 8 555555 9999999999999999 3 777777 7 4 2 3 111 0 6 6 66 1 0 2 2 111 0 6 2 88 88 77777 1 0000 1 111 1 1 6
lowQualScore : .. .. . ...... . . . . . .. . ........ ... . . ......... . . ..... . ... . ........... .... .. . . . . . .. . . ........ ......... ..... .. . .. . . . .. . ... . . . . .... . . ........ . .... ........... . . . . . . . . . . ...... . .. . . . ..... .. . . . .. ...... . . ... .............. . . . . ... .. . . ... . ... . .... .. . . . . . .. . .. .... ........... ......... . .. . . ... ..... .. . . ....... .. . .. ... . ... . . . . . . . .......... ... . ..... . .. .. .. ....................... . . ..... . ...... ................ . ...... . . . . ... . . . .. . . . . ... . . . .. .. ..... . .... . ... . . .
lowQualScore : 00 33 7 777777 7 7 7 0 0 33 3 77777777 333 0 0 333333333 3 0 77777 7 333 0 33333333333 0000 55 0 0 0 0 0 77 3 3 77777777 000000000 00000 77 3 77 7 0 0 77 0 333 0 3 3 0 7777 2 0 22222222 2 2222 22222222222 0 3 7 3 3 7 3 3 3 5 777777 7 33 3 0 0 00000 00 0 3 3 00 000000 0 7 777 77777777777777 0 0 5 2 555 22 8 8 222 0 222 7 0000 66 0 0 7 7 7 99 7 99 1111 33333333333 888888888 5 33 5 3 000 88888 44 7 7 1111111 99 7 77 444 7 000 0 5 8 0 0 0 0 9999999999 111 7 11111 7 55 22 22 22222222222222222222222 8 8 00000 0 222222 8888888888888888 2 555555 3 0 5 0 555 0 0 0 00 0 0 5 5 000 0 0 5 33 33 00000 0 0000 0 555 0 0 0
consensus : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCC-GCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTACG---TANT-AAACTTCAAA--G--TTTATCGAGGCACN-GGCAC-TGTAAG--T-CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAA-AATA-TGCACAC----GC--TTTAATAACA-AGAA-TGC-C---AAGCG-TGTAAATT-ACATTCGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGT-CATAGAGCATTTTTTTAC-G-TNA--T-TTTTTTTTTATTTTATTA-T-TTTTTTTG--G-------CTATACCTAGATCC-GCGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TTAGAACCTCTTGTAACATT-TTGGTCAAACTGAAAGGGAGGGGGGGGGC-AAA--ANATCCCC---CTTT-----AA-----AGAAA-GTGGA-GAAGGGGGGGGGGGG---TAAAAT-AAAAAACACACACCNANAAAAAAAAAAAATAGTCCAGGATTTTTT-CATCA---TATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G-C-ATA--TGTTAAACT-TATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCGTAT--GT--TAAACAT-----------TGT----TCAC-ATGTTTTCAA-ACAT-AGTG-TTAACATATGTT-CG-ATTACAA--ACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATNCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
Reference ( family-2550 ) : NGTGCTGTGAATGGATCCTTCGTTGCNATNTGCTGTGCATCTNGTCCACTGNTGTAATCAGTGGGGTCCCCGCAAGTAAAT-AAGTAATTCTAGGCGCACNGACNACGGCCTANNTAAACTTNAAACTGACTTTATCGAGGCACCCGGCNCATGTAAGATTACAACATCAGCAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAA-AATA-TGCACAC----AC--TTTAATAACA-AGAAGTGC-C---AAGCGTTGTAAATT-ACATTCAACGTGATATNANGATAA-AGTTCTTCTTAGCAGAANACTNGAACATTGG-TTNACCNT-CATAGAGCATTTTTTTAC-G-TNA--T-TTTTTTTTTATTTTATTA-T-TTTTTTTG--G-------NTANACCTAGATCCGGCGCCGTAAACTGCGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTTATATGAAGTTTACAAGGATNTTAGAACCTCTTGTAACATTATTNGTCAAACTGAAAGGGAGGGGGGGGGC-GAA--ATACCCCC---CTTT-----AA-----AGAAA-GTGGA-GAAGGGGGGGGGGGG---TAAAAT-AAAAAACACACACCNANAAAAAAAAAGAATAGTCCAGAGTTTTTT-CATCG---TATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGGC-ATA--TGTNGAA-T-TATGTT-T---GAAA-CATATGTTNA-ACATATGTTNA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATC--AT--GT--TAAACAT-----------TGT----TCAC-ATGTTTTCAA-ACAT-AGTG-TTAACATATGNT-CA-ATTNCAA--ACATATGTT----TAACATTAAGGTGAAAAAATCATGTTTAA-CATATGTTAACATATTGGT-GAGATNTTTG-GTGTGTGTTTTTATTTTAACCCCC-CCCCCCCCCTTCTCCAC--TTTTC--AAAAAAG-GGGGGGGAGNTATTTTG---CCCCCCCCNCCTTTTCGG-TTGACNAANATGTTACAAA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGTCCC-GCA-GTAAA----GT--TTCTAGGC--ACGGACAACGGCCTACTTAAACTTCAAA--G--TTTATCAAGGCACCAGGCTCATGTAAG--T-CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAA-AATA-TGCACAC----AC--TTTAATAACA-AGAAGTGC-C---AAGCGTTGTAAATT-ACA-TCAACGTGATATTAAGATAA-AGTTCTT-TTAGCAGAAA--TAGAACATTGG-TTGACC-T-CATAGAGCATTCTTTTAC-G-TAA--T-TTTTCTTAAATTTTA-TA-T-ATTTTTTG--GTAGGGGCCTAGACCTAGATCC-GCGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAA-GATATTAGAACCTCTTGTAACATT-TTTGTC-AACTGAAAAGGA-GGGGGGGGC--AA--ATATCCCCCCACTTT-----AA-------AAA-GTGGA-GAA-GGGGTGTGTGT---TAAAA--ACAAAACACACAAACACAAAAAAAAAGAACAGTCCAGA--TTTTT-CATTT---AATGTTA--ATCATA-TGTT-AAAAA-TTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CAT---A-TGAATTTTCAC-CATAGTGTT---AACAT---ATTGTTTGA-TAGTTG-GCC-ATA--TGTTAAACT-TATCTT-T---GAAA-CAT-TATTGGTACATATGTTCA-AAAC--ATA--TA-TCAC-CAATA-TGATGAG--A-AAATCATAT--GT--TAAACAT-----------------------ATG--TTCAATACAT-A-TGTTTAACATATGTA-TATATTACAA--CAATATGGT----AAACAT
gi|11 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatT-CATAGAGCA--TTTTTAC-G-TCATTT-TTTTTTTTTATTTTATTATT-TTTTTTTGTTG-------GTATACCTAGATCT-GCGCGGTAAACT-CGGAGTAAAAAAAG--TTTTGC-AAAAGAAGGAat
gi|12 : TTTTTA-GTGTTTTTTTTTATTCTAACCCCCACCCCTCCCTTTCTCCAC--TTTTT--AAAAAAGAGGGGGGGGGGTATTTCG---CCCCCCCCCC
gi|13 : AAAAACACACACCAAAAAATAAAAAAAATCGTCAAGGATTTTTT---TCGCTCTATGTTTTAATCATG-TGTT-CAACATTTTTA-CATGT-T-TATCATATGT-TTAAC--ATA-Taaatagtccaggattttt
gi|14 : tAAA-GTGGAAGAAGGGGGGGGGGGG---TAAAATAAAAAAACAC-CCCCCCCAAAAAAAAAGAATAGTCCAG-GATTTTT-CATCA---TATGTTA--ATCATA-TGTT-CAA
gi|15 : AAA-CAT--GTTAA-ACATACATTCA-AAACA-AAT-GC--TCAA-A-ATA-TGAT--GATA-AAATCGTAT--GT--TAAACAT-----------GTT----TCA
gi|16 : CCCCAC--CTTTC--GAA-----GGGGGGGAGACATTTT----TCCCCCCCACCTTTTCGG-CGGACAAAa
gi|2 : GTGCTGCGAAT--ATTCTTCATTGCAA-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCC--GCTAGGAATTTAAGT--TTCTAGGCGC--TGACTATG---TAGT--AACTTCAAA--G--TTTATCTAGGCACA-GGCAC-TGTAG---T-CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA--CTTTAACAATACTACACATCGATGC--TTTAATA---------TGCAC---ACAC--------TT-ACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGAAG--TAGAAC-TTGGCTTTAC-GT-CATAGAGCATTTTTTTTT-GGTCA--T-TTTTTTTTTATTTTATT--T-TTTTTTTG--G-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAGTTTT-GCAAAA-GAAGGAGAATTTAGTT-ATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGGCT-TTAGAAC-TCT-GTAACATT--TGGTCAAACTGAAAGGGAGGGGGGGGGCCAAA--AGATCCCCA--CTTT-----AA-----AAAAAAGTGGA-GAAGGTGGGGGGAGG---TAAAAT-AAAAAACACACACCAAAAAAAAAAAAAAACAATC---ATTTTTTTTCATTA---TATGTTAT-ATCATA-TGTT-CAAAATCTTTA-TATTT-TATATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGGCCATA--TGTGGAA-T-TATGTT-T---GAAA-CATATGGTGA-ACATATGTTGATAAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-GAATC--AT--GT--TAAACAT-----------TGT----TCACCATGTTTTCAA-ACATCAGTG-TTAACATATGGC-CA-ATTACAA--ACATATGTT----TAACATTAAGGTGAAAAAATCATGTTTAA-CATATGTTAGCATATTGATAAAGATGCTTGTGTGTGTGTTTTTATTTT---CCCC-CCCCTCACCTTCTCCACCTTTTTCATAAAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAG
gi|3 : cTATATATAATTACA-TTATATGAAGTTTACAAAGATTTTAGAACTT--TGTAACAT-ATTGGTCAA-CTGAAAGGG-GTGAGGGGGC-AAATAACACCCCC---CTTTTTATCAAGTGCGAGAAA-ATGGA-GGTGGGGGGGGGGGGGGTTAAAAT-AAAAA-CACACACC---AAAAAAAAAAAATAGTCCAGGATTTTTT-CATCA---TATGTTA--ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CATAG-A-AT--TTTT--CACTTATTGTTA--AACAT---A--GTT--G-AAGTTG-GTC-ATA--TGTTAAACT-TATGTT-TTTGAAAA-CATATGGTGA-GCATATATTCA-AAAC---TT-ATATTCACGC-ATA-TGAT--G--A-GAA
gi|4 : TTG-CATCA---TATGTTA--ATCACA-TGTT-TAAA-TTTTTA-CATGT-C-TATCATATGT-TTAAC--ATG-C--TAAACATA------CAT-G-A-CT--TTTTCA-GCTTG-TGTTA--AACTT---A-TCTAT-A-AATTCGT-----TA--T-TCCAA-A-CATGTT-T---CAAA-CATATTCTAA-ACA-ACCTTTA-AAATACATA--T--CCAC-C-AAA-TTAT--GACA-AAATC--AT--ATGATAAACATATAAATTCCAATATCTAGTCAC-ATGTT---AA-ACAT-A-TG------ATATGTTGCT-ATTTTACCTGCGTATG------TAACAGTAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : ATGT-AT--TCATACTGTTTCAAAAATTTAACTATGTAT-CATCATGGATCTTAACCAATAATG-TTA----AGCATACCAT-G-AACT--TTTTCAC-CTTA-TGCTTAAAACATCCGA-TGTTTGG-AAGTTG-GTC-ATACATGTTAAACT-TATATT-T---GAAA-CATAGGTTGA-ACATATGTTCA-AAAC--ATA--TA-TTAC-C-ATAGTGATC-G--AGAAATCATAT--GT--TAAA----------------------CAC-ATATTTT--A-ACAT-Actttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|6 : cTTTAAT--TTTTTAA-AATT-GGCACAC----CCCCTTTATTAACACAGAATTAC-TCCAAAGCGGTGTAAATTTACATTCAACG-GATATAATGATA---GTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGG-CGG--TATTTTTTTTTATTTTATTA-TATTTATTTG--G-------
gi|7 : GTTTAA-AA-------C-ATA--TGTTAAA-AATGTGCT-T---GAAATCAGTTGCTTT-ACATATGTTGA-AATCA-ATATGAA-T-AC---ATA-TGGTTTG--A-AAAGC--ATATGT--TA--CCTGA---------TGC----TC-----GTTTTTAT----T-AGT--TAAACATATGTT-CG-A----AG--ACATA-GTTCTCTTAACAT-ATGTTGAACA---TATGCTTAAACATATGTTt
gi|8 : taATCA---TTCGTTA--ACCATA-TGTT-CAAAATTGTTA-TATGT-T------TATGT---------------TAA----A------CAT-GTA-TT--TTT--AAAC-----------AACAT---G-TGCTGGACAAGT--------------TTGAA-C-TATGCTGT---AAGG-CATATGTTCA-ACATATGTTAA-AAACA-
gi|9 : CTGTGAATGGATC--TCATT---AAATACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCC-GCAAGTAAAT-AAATAATTCTAGGCGCACTGACTAC-----AAGGAA--TTAAAACTGACTTTATTGAGACA-TCAACAC---TTAGATTACAACATCAGCAAAAtgtgtttaaaatggtgggatgagaatacacaaaaaacacacatatgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA
Alignments
lowQualScore : 11 3333 22222222 111 444444444444 11 1 1 11 2222 11 1 1 1 1 1 22 1 44444444 55555555555555555555555555 1 2 1 111 1 11 1 1111 1 1 1 11 1 44444444444444 1 1 1 111111 22 1 1 1 11111 11 11 888888888888888888888888888888 222 222 22 1111 22222222222 111111111 11 1 111 11111 222222222 111 2222222222 111 22222222 77777777777777777777777 222222 222222222 222222 222 1 11 11 11 111 11111 3333 111
lowQualScore : 0 88 6 0 7777 6 7 33333333 222 555555555555 7 7 3 44 3 6 2 88 9999 88 5 5 5 5 5 00 3 00000000 33333333333333333333333333 3 3 0 3 999 2 88 1 7 3 9999 3 0 0 1 0 33 66 0 00000000000000 3 3 7 6 7 7 7 5 888888 00 7 2 3 3 66666 7 7 7 99 2 77 33 1 444444444444444444444444444444 8 8 3 8 888 88 222 2 99 99 66 5 5 1 5 5 55 5 77 8888 44444444444 333333333 2 22 3 3 888 66666 1 5 777777777 77 99 5 000 5 6 0 0 5 1 5 8888888888 222 5 33333333 9 33333333333333333333333 0 0 99999 8 555555 555555555 22 3 777777 7 1 1 1 111 5 1 1 1 88 88 1 88 999 77777 0000 666 1
lowQualScore : . .. . . .... . . ........ ... ............ . . . .. . . . .. .... .. . . . . . .. . ........ .......................... . . . . ... . .. . . . .... . . . . . .. .. . .............. . . . . . . . . ...... .. . . . . ..... . . . .. . .. .. . .............................. . . . . ... .. ... . .. .. .. . . . . . .. . .. .... ........... ......... . .. . . ... ..... . . ......... .. .. . ... . . . . . . . .......... ... . ........ . ....................... . . ..... . ...... ......... .. . ...... . . . . ... . . . . .. .. . .. ... ..... .... ... .
lowQualScore : 7 33 7 7 7777 7 3 33333333 333 333333333333 3 3 7 33 3 7 3 33 3333 00 5 0 0 5 0 77 3 33333333 77777777777777777777777777 3 7 7 3 777 0 33 0 3 3 7777 2 0 0 0 0 88 55 0 44444444444444 3 3 3 7 3 3 3 5 777777 77 3 0 3 3 00000 3 3 3 55 5 00 88 0 555555555555555555555555555555 0 0 2 0 000 88 777 5 88 22 66 0 0 7 7 7 99 7 99 1111 33333333333 888888888 5 33 5 3 333 22222 4 7 333333333 99 44 7 000 0 5 8 2 0 4 0 9999999999 111 7 99999999 0 22222222222222222222222 8 8 00000 0 222222 555555555 00 2 555555 3 0 0 0 555 5 0 0 0 55 00 0 33 000 00000 0000 000 0
consensus : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGA--ANTAGAACATTGG-TTTACCGT-CATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGGC-GAA--ATACCCCC---C---------TTT-----AA-----AGAAA-GTGGA-GAAGGGGGGGGG-GGGGGTTAAAAT-AAAAAACACACACC-A-AAAAAAAAAAAATAGTCCAGGA-TTTTTT--CATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG--G-C-ATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A--AAATCATATGTTAAACAT-----------TGT----TCAC-ATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
Reference ( family-2550 ) : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANT--AAACTTCAAAGTTTATCGAGGCACN-GGCAC-TGTAAGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACATTCGACG-GATATAATGATAA-AGTTCTTCTTAGCAGA--ANTAGAACATTGG-TTTACCGT-CATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGGC-AAA--ANATCCCC---C---------TTT-----AA-----AGAAA-GTGGA-GAAGGGGGGGGG-GGG---TAAAAT-AAAAAACACACACCNANAAAAAAAAAAAATAGTCCAGGA-TTTTTT--CATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG--G-C-ATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A--AAATCGTATGTTAAACAT-----------TGT----TCAC-ATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CGA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATNCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGTCCCGCA-GTAAA----GT--TTCTAGGC--ACGGACAAC--GGCCTACTT-AAACTTCAAAGTTTATCAAGGCACCAGGCTCATGTAAGT--CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAAAATA-TGCACAC----AC--TTTAATAACA-AGAAGTG---C-CAA-GCG-TTGTAAATT-ACAT-CAACGTGATATTAAGATAA-AGTTCTT-TTAGCAGA--AATAGAACATTGG-TTGACC-T-CATAGAGCATTCTTTTAC-G-TAAT-TTTTCTTAA--ATTTTAT-AT-ATTTTTT----GGTAGGGGCCTAGACCTAGATCCG-CGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAA-GATATT-AGAACCTCTTGTAACATTTTTGTC-AACTGAAAAGGA-GGGGGGGGC--AA--ATATCCCCCCAC---------TTT-----AA-------AAA-GTGGA-GAA-GGGGTGTG-TGT---TAAAA--ACAAAACACACAAACACAAAAAAAAAGAACAGTCCAGA---TTTTT--CATTTAATGTTA--ATCATA-TGTT-AAAAA-TTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CAT---A-TGAATTTTCAC-CATAGTGTT---AACAT---ATTGTTTGA-TAGTTG--GCC-ATA--TGTTAAACTTATCTT-T---GAAA-CAT-TATTGGTACATATGTTCA-AAAC--ATA--TA-TCAC-CAATA-TGATGAG--A--AAATCATATGTTAAACAT-----------------------ATG--TTCAATACAT-A-TGTTTAACATATGTAT-ATA--TTACAACAATATGGT----AAACAT
gi|11 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatT-CATAGAGCATTTTT--AC-G-TCAT-TTTTTTTTTTTATTTTATTAT-TTTTTTTTGTTGG--------TATACCTAGATCTG-CGCGGTAAACT-CGGAGTAAAAAAAG--TTTTGC-AAAAGAAGGAat
gi|12 : GTGTTTTTTTTTATTCTAACCCCCACCCCTCCCTTTCTCCAC--TTTTT--AAAAAAGAGGGGGGGGGGTATTTCG---CCCCCCCCCC
gi|12 : GGGGGGG-GGGC-GAA--ATACCCCC---CCCCCTCTTTTTT-----AA-------AAA-GTGGA-GAAAGGGAGGGGTGGGGGTTAGAAT-AAAAAA-AAACACT-------AAAAAAAATAGTCCAGGA-TTTTTtaaaaaaaatagtccaggattttt
gi|13 : AAAAACACACACCAAAAAATAAAAAAAATCGTCAAGGATTTTTTT--CGCTCTATGTTTTAATCATG-TGTT-CAACATTTTTA-CATGT-T-TATCATATGT-TTAAC--ATA-T
gi|14 : tAAA-GTGGAAGAAGGGGGGGGG-GGG---TAAAATAAAAAAACAC-CCCCCCCAAAAAAAAAGAATAGTCCAGGA--TTTTT--CATCATATGTTA--ATCATA-TGTT-CAA
gi|15 : AAA-CAT--GTTAA-ACATACATTCA-AAACA-AAT-GC--TCAA-A-ATA-TGAT--G--ATAAAATCGTATGTTAAACAT-----------GTT----TCA
gi|16 : CCCCAC--CTTTC--GAA-----GGGGGGGAGACATTTT----TCCCCCCCACCTTTTCGG-CGGACAAAa
gi|2 : GTGCTGCGAAT--ATTCTTCATTGC-AACTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCC-GCTAGGAATTTAAGT--TTCTAGGCGC--TGACTAT--G---TAGT--AA-CTTCAAAGTTTATCTAGGCACA-GGCAC-TGTA-GT--CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA-CTTTAACAATACTACACATCGATGC--TTTAATA---------TG---CACAC-AC---------TT-ACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGA--AGTAGAAC-TTGGCTTTAC-GT-CATAGAGCATTTTTTTTT-GGTCAT-TTTTTTTTT--ATTTTATT-T-TTTTTTT----GG-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAGTTTT-GCAAAA-GAAGGAGAATTTAGTT-ATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGGCT-TT-AGAAC-TCT-GTAACATTT-GGTCAAACTGAAAGGGAGGGGGGGGGCCAAA--AGATCCCCA--C---------TTT-----AA-----AAAAAAGTGGA-GAAGGTGGGGGG-AGG---TAAAAT-AAAAAACACACACCAAAAAAAAAAAAAAACAATC----A-TTTTTTTTCATTATATGTTAT-ATCATA-TGTT-CAAAATCTTTA-TATTT-TATATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGG-CCATA--TGTGGAA-TTATGTT-T---GAAA-CATATGGTGA-ACATATGTTGATAAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A--GAATC--ATGTTAAACAT-----------TGT----TCACCATGTTTTCAA-ACATCAGTG-TTAACATATGG-C-CAA--TTACAAACATATGTT----TAACATTAAGGTGAAAAAATCATGTTTAA-CATATGTTAGCATATTGATAAAGATGCTTGTGTGTGTGTTTTTATTTT--CCCC--CCCCTCACCTTCTCCACCTTTTTCATAAAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAGA
gi|3 : cTATATATAATTACA-TTATATGAAGTTTACAAAGAT-TTTAGAACTT--TGTAACATATTGGTCAA-CTGAAAGGG-GTGAGGGGGC-AAATAACACCCCC---C---------TTTTTATCAAGTGCGAGAAA-ATGGA-GGTGGGGGGGGG-GGGGGTTAAAAT-AAAAA-CACACACC---AAAAAAAAAAAATAGTCCAGGA-TTTTTT--CATCATATGTTA--ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CATAG-A-AT--TTTT--CACTTATTGTTA--AACAT---A--GTT--G-AAGTTG--GTC-ATA--TGTTAAACTTATGTT-TTTGAAAA-CATATGGTGA-GCATATATTCA-AAAC---TT-ATATTCACGC-ATA-TGAT--G--A--GAA
gi|4 : TTG--CATCATATGTTA--ATCACA-TGTT-TAAA-TTTTTA-CATGT-C-TATCATATGT-TTAAC--ATG-C--TAAACATA------CAT-G-A-CT--TTTTCA-GCTTG-TGTT---AA-AC---T-TATCTAT-AAATTC--G-T--TA--TTCCAAAC--ATGTT-T---CAAA-CATATTCTAA-ACA-ACCTTTA-AAATACATA--T--CCAC-C-AAA-TTAT--GACA--AAATCATATGATAAACATATAAATTCCAATATCTAGTCAC-ATGTT---AA-ACAT-A-TG------ATATGT-TGCTATTTTACCTGCGTATG------TAACAGTAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : ATGT-AT--TCATACTGTTTCAAAAATTTAACTATGTAT-CATCATGGATCTTAACCAATAATG-TTA----AGCATACCAT-G-AACT--TTTTCAC-CTTA-TGCTTAAAACATCCGA-TGTTTGG-AAGTTG--GTC-ATACATGTTAAACTTATATT-T---GAAA-CATAGGTTGA-ACATATGTTCA-AAAC--ATA--TA-TTAC-C-ATAGTGATC-G--AG-AAATCATATGTTAAA----------------------CAC-ATATTTT--A-ACAT-Actttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|6 : cTTTAAT--TTTTTAAAATT-GGCACAC----CCCCTTTATTAACACAGAA-TTACTC-CAAAGCGGT-GTAAATTTACATTCAACG-GATATAATGAT---AGTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGG-CGGTATTTTTTTTT--ATTTTATTATATTTATTT----GG-------
gi|7 : GTTTAA-AA--------C-ATA--TGTTAAAAATGTGCT-T---GAAATCAGTTGCTTT-ACATATGTTGA-AATCA-ATATGAA-T-AC---ATA-TGGTTTG--A--AAAGCATATGTTA--CCTGA---------TGC----TC-----GTTTTTAT----T-AGT--TAAACATATGT-T-CGA------AGACATA-GTTCTCTTAACAT-ATGTTGAACA---TATGCTTAAACATATGTTt
gi|8 : taATCATTCGTTA--ACCATA-TGTT-CAAAATTGTTA-TATGT-T------TATGT---------------TAA----A------CAT-GTA-TT--TTT--AAAC-----------AACAT---G-TGCTGGACAAGT---------------TTGAAC-TATGCTGT---AAGG-CATATGTTCA-ACATATGTTAA-AAACA-
gi|9 : CTGTGAATGGATC--TCATTAA-A--TACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAATAATTCTAGGCGCACTGACTACAAG---GAATTAAAACT---GACTTTATTGAGACATC-AACAC-T-TAGATTACAACATCAGCAAAAtgtgtttaaaatggtgggatgagaatacacaaaaaacacacatatgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA
Alignments
lowQualScore : 11 3333 22222222 111 333333333333 1 1 2222 2222 11 1 1 1 1 1 22 1 44444444 55555555555555555555555555 1 1 1 22 1 111 1 11 1 1 1 1 11 1 44444444444444 1 1 1 111111 22 1 1 1 11111 1 1 11 888888888888888888888888888888 111 111 333333 111 22 1111 22222222222 111111111 11 1 111 11111 333333 111 2222222222 111 22222 7777777777777777777777 222222 222222222 222222 222 1 11 11 11 111 11111 3333 111
lowQualScore : 0 88 6 0 7777 6 7 33333333 222 444444444444 7 3 3 3 6 1111 9999 88 5 5 5 5 5 00 3 00000000 33333333333333333333333333 3 3 0 3 00 2 999 7 3 88 0 3 0 0 1 0 33 66 0 00000000000000 3 3 7 6 7 7 7 5 888888 00 7 2 3 3 66666 7 7 7 99 0 0 33 0 888888888888888888888888888888 8 0 8 5 444 8 555 11 6 6 888888 99 2 222 6 66 5 5 1 5 5 55 5 77 8888 44444444444 333333333 2 22 3 3 888 66666 1 5 000000 1 77 99 5 000 5 6 0 0 5 1 5 8888888888 222 5 77777 5 1 1111111111111111111111 0 0 99999 8 555555 000000000 22 3 777777 7 1 1 1 111 5 1 1 88 88 1 88 999 77777 0000 666 1
lowQualScore : . .. . . .... . . ........ ... ............ . . . . . .... .... .. . . . . . .. . ........ .......................... . . . . .. . ... . . .. . . . . . . .. .. . .............. . . . . . . . . ...... .. . . . . ..... . . . .. . . .. . .............................. . . . . ... . ... .. . . ...... .. . ... . .. . . . . . .. . .. .... ........... ......... . .. . . ... ..... . . ...... . .. .. . ... . . . . . . . .......... ... . ..... . . ...................... . . ..... . ...... ......... .. . ...... . . . . ... . . . .. .. . .. ... ..... .... ... .
lowQualScore : 7 33 7 7 7777 7 3 33333333 333 333333333333 3 7 3 3 7 3333 3333 00 5 0 0 5 0 77 3 33333333 77777777777777777777777777 3 3 7 3 77 0 333 3 3 77 0 2 0 0 0 0 88 55 0 44444444444444 3 3 3 7 3 3 3 5 777777 77 3 0 3 3 00000 3 3 3 88 0 5 88 8 555555555555555555555555555555 0 8 2 0 000 0 666 66 7 7 888888 22 5 333 7 66 0 0 7 7 7 99 7 99 1111 33333333333 888888888 5 33 5 3 333 22222 4 7 000000 4 99 44 7 000 0 5 8 2 0 4 0 9999999999 111 7 11111 7 7 8888888888888888888888 8 8 00000 0 222222 000000000 00 2 555555 3 0 0 0 555 5 0 0 55 00 0 33 000 00000 0000 000 0
consensus : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGNGGGG---GG-GGGGGTTAAAATAAAAAACACAC-ACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCATATGTTAAACAT-----------TGT----TCA-CATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
Reference ( family-2550 ) : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGGGGGG---GG-GGGGGTTAAAATAAAAAACACAC-ACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCATATGTTAAACAT-----------TGT----TCA-CATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGTCCCGCA-GTAAA----GT--TTCTAGGC--ACGGACAAC--GGCCTACTT-AAACTTCAAAGTTTATCAAGGCACCAGGCTCATGTAAGT--CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAAAATA-TGCACAC----AC--TTTAATAACA-AGAAGTG---C-CAA-GCG-TTGTAAATT-ACAT-CAACGTGATATTAAGATAA-AGTTCTT-TTAGCAGAAA--TAGAACATTGG-TTGACC-TC-ATAGAGCATTCTTTTAC-G-TAAT-TTTTCTTAA--ATTTTAT-AT-ATTTTTT----GGTAGGGGCCTAGACCTAGATCCG-CGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAA-GATATT-AGAACCTCTTGTAACATTTTTGTC-AACTGAAAAGGA-GGGGGGGG-C-AA--ATATCCCCCCAC---------TTT-----AA-------AAAGTGGA-GAA----GGG---GT-GTGTGTTAAAA-ACAAAACACACAAAC--AC--AAAAA--AAAAGAACAGTCCAGA----T-TTTTCATTTAATGTTA--ATCATA-TGTT-AAAAA-TTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CAT---A-TGAATTTTCAC-CATAGTGTT---AACAT---ATTGTTTGA-TAGTTG-GC-CATA--TGTTAAACTTATCTT-T---GAAA-CAT-TATTGGTACATATGTTCA-AAAC--ATA--TA-TCAC-CAATA-TGATGAG--A-AAATCATATGTTAAACAT-----------------------ATG--TTCAATACAT-A-TGTTTAACATATGTAT-ATA--TTACAACAATATGGT----AAACAT
gi|11 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatTC-ATAGAGCATTTTT--AC-G-TCAT-TTTTTTTTTTTATTTTATTAT-TTTTTTTTGTTGG--------TATACCTAGATCTG-CGCGGTAAACT-CGGAGTAAAAAAAG--TTTTGC-AAAAGAAGGAat
gi|12 : GTGTTTTTTTTTATTCTAACCCCCACCCCTCCCTTTCTCCAC--TTTTT--AAAAAAGAGGGGGGGGGGTATTTCG---CCCCCCCCCC
gi|12 : GGGGGGGGG-CGAA--ATACCCCC---CCCCCTCTTTTTT-----AA-----A--AAGTGGA-GAAAGGGAGG---GGTGGGGGTTAGAATAAAAAA-AAAC-ACT----------A--AAAAAAATAGTCCAGGA--TT-TTTtaaaaaaaatagtccaggattttt
gi|13 : gAAAAACACAC-ACC--A---AAAAATAAAAAAAATCGTCAAGGA--TTTTTTTCGCTCTATGTTTTAATCATG-TGTT-CAACATTTTTA-CATGT-T-TATCATATGT-TTAAC--ATA-T
gi|14 : tAAAGTGGAAGAAGGGGGGG---GG-GGG---TAAAATAAAAAA-ACAC-CCC--CCCCAAAAA--AAAAGAATAGTCCAGGA---T-TTTTCATCATATGTTA--ATCATA-TGTT-CAA
gi|15 : AAA-CAT--GTTAA-ACATACATTCA-AAACA-AAT-GC--TCAA-A-ATA-TGAT--GATA-AAATCGTATGTTAAACAT-----------GTT----TCA-
gi|16 : CCCCAC--CTTTC--GAA-----GGGGGGGAGACATTTT----TCCCCCCCACCTTTTCGG-CGGACAAAa
gi|2 : GTGCTGCGAAT--ATTCTTCATTGC-AACTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCC-GCTAGGAATTTAAGT--TTCTAGGCGC--TGACTAT--G---TAGT---AACTTCAAAGTTTATCTAGGCACA-GGCAC-TGTAG-T--CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA-CTTTAACAATACTACACATCGATGC--TTTAATA---------TG---CACAC-AC---------TT-ACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGAAG--TAGAAC-TTGGCTTTAC-GTC-ATAGAGCATTTTTTTTT-GGTCAT-TTTTTTTTT--ATTTTATT-T-TTTTTTT----GG-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAGTTTT-GCAAAA-GAAGGAGAATTTAGTT-ATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGGCT-TT-AGAAC-TCT-GTAACATTT-GGTCAAACTGAAAGGGAGGGGGGGGGCCAAA--AGATCCCCA--C---------TTTA----AA-----AAAAAGTGGA-GAAGGTGGGG---GG-AGG---TAAAATAAAAAACACAC-ACCAAA---AAAAA--AAAAAAACAATC----ATTTT-TTTTCATTATATGTTAT-ATCATA-TGTT-CAAAATCTTTA-TATTT-TATATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGGCCATA--TGTGGAA-TTATGTT-T---GAAA-CATATGGTGA-ACATATGTTGATAAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-GAATC--ATGTTAAACAT-----------TGT----TCACCATGTTTTCAA-ACATCAGTG-TTAACATATGG-C-CAA--TTACAAACATATGTT----TAACATTAAGGTGAAAAAATCATGTTT-AACATATGTTAGCATATTGATAAAGATGCTTGTGTGTGTGTTTTTATTTT--CCCC--CCCCTCACCTTCTCCACCTTTTTCATAAAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAGA
gi|3 : cTATATATAATTACA-TTATATGAAGTTTACAAAGAT-TTTAGAACTT--TGTAACATATTGGTCAA-CTGAAAGGG-GTGAGGGGG-CAAATAACACCCCC---C---------TTTTTATCAAGTGCGAGAAAATGGA-G---GTGGGGGGGGG-GGGGGTTAAAAT-AAAAACACAC-ACC------AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTA--ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CATAG-A-AT--TTTT--CACTTATTGTTA--AACAT---A--GTT--G-AAGTTG-GT-CATA--TGTTAAACTTATGTT-TTTGAAAA-CATATGGTGA-GCATATATTCA-AAAC---TT-ATATTCACGC-ATA-TGAT--G--A-GAA
gi|4 : TTGCATCATATGTTA--ATCACA-TGTT-TAAA-TTTTTA-CATGT-C-TATCATATGT-TTAAC--ATG-C--TAAACATA------CAT-G-A-CT--TTTTCA-GCTTG-TGTT---AA-AC---T-TATCTAT-AAATTC-G--T-TA--TTCCAAAC--ATGTT-T---CAAA-CATATTCTAA-ACA-ACCTTTA-AAATACATA--T--CCAC-C-AAA-TTAT--GACA-AAATCATATGATAAACATATAAATTCCAATATCTAGTCA-CATGTT---AA-ACAT-A-TG------ATATGT-TGCTATTTTACCTGCGTATG------TAACAGTAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : ATGT-AT--TCATACTGTTTCAAAAATTTAACTATGTAT-CATCATGGATCTTAACCAATAATG-TTA----AGCATACCAT-G-AACT--TTTTCAC-CTTA-TGCTTAAAACATCCGA-TGTTTGG-AAGTTG-GT-CATACATGTTAAACTTATATT-T---GAAA-CATAGGTTGA-ACATATGTTCA-AAAC--ATA--TA-TTAC-C-ATAGTGATC-G--AGAAATCATATGTTAAA----------------------CA-CATATTTT--A-ACAT-Actttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|6 : cTTTAAT--TTTTTAAAATT-GGCACAC----CCCCTTTATTAACACAGAA-TTACTC-CAAAGCGGT-GTAAATTTACATTCAACG-GATATAATGATA---GTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGG-CGGTATTTTTTTTT--ATTTTATTATATTTATTT----GG-------
gi|7 : GTTTAA-AA--------CATA--TGTTAAAAATGTGCT-T---GAAATCAGTTGCTTT-ACATATGTTGA-AATCA-ATATGAA-T-AC---ATA-TGGTTTG--A-AAAGCATATGTTA--CCTGA---------TGC----TC-----GTTTTTAT----T-AGT--TAAACATATGT-T-CGA------AGACATA-GTTCTCTTAACAT-ATGTTGAACA---TATGCTTAAACATATGTTt
gi|8 : taATCATTCGTTA--ACCATA-TGTT-CAAAATTGTTA-TATGT-T------TATGT---------------TAA----A------CAT-GTA-TT--TTT--AAAC-----------AACAT---G-TGCTGGACAAGT--------------TTGAAC-TATGCTGT---AAGG-CATATGTTCA-ACATATGTTAA-AAACA-
gi|9 : CTGTGAATGGATC--TCATTAA-A--TACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAATAATTCTAGGCGCACTGACTACAAG---GAATTAAAACT---GACTTTATTGAGACATC-AACAC-T-TAGATTACAACATCAGCAAAAtgtgtttaaaatggtgggatgagaatacacaaaaaacacacatatgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA
Alignments
lowQualScore : 11 3333 22222222 111 333333333333 1 1 2222 2222 11 1 1 1 1 1 22 1 44444444 55555555555555555555555555 1 1 1 22 1 111 1 11 1 1 1 1 11 1 44444444444444 1 1 1 111111 22 1 1 1 11111 1 1 11 888888888888888888888888888888 111 111 333333 111 22 1111 22222222222 111111111 11 1 111 11111 333333 111 2222222222 111 22222 7777777777777777777777 222222 222222222 222222 222 1 11 11 11 111 11111 3333 111
lowQualScore : 0 88 6 0 7777 6 7 33333333 222 444444444444 7 3 3 3 6 1111 9999 88 5 5 5 5 5 00 3 00000000 33333333333333333333333333 3 3 0 3 00 2 999 7 3 88 0 3 0 0 1 0 33 66 0 00000000000000 3 3 7 6 7 7 7 5 888888 00 7 2 3 3 66666 7 7 7 99 0 0 33 0 888888888888888888888888888888 8 0 8 3 444 8 555 11 6 6 888888 99 2 222 6 66 5 5 1 5 5 55 5 77 8888 44444444444 333333333 2 22 3 3 888 66666 1 5 000000 1 77 99 5 000 5 6 0 0 5 1 5 8888888888 222 5 77777 5 1 1111111111111111111111 0 0 99999 8 555555 000000000 22 3 777777 7 1 1 1 111 5 1 1 88 88 1 88 999 77777 0000 666 1
lowQualScore : . .. . . .... . . ........ ... ............ . . . . . .... .... .. . . . . . .. . ........ .......................... . . . . .. . ... . . .. . . . . . . .. .. . .............. . . . . . . . . ...... .. . . . . ..... . . . .. . . .. . .............................. . . . . ... . ... .. . . ...... .. . ... . .. . . . . . .. . .. .... ........... ......... . .. . . ... ..... . . ...... . .. .. . ... . . . . . . . .......... ... . ..... . . ...................... . . ..... . ...... ......... .. . ...... . . . . ... . . . .. .. . .. ... ..... .... ... .
lowQualScore : 7 33 7 7 7777 7 3 33333333 333 333333333333 3 7 3 3 7 3333 3333 00 5 0 0 5 0 77 3 33333333 77777777777777777777777777 3 3 7 3 77 0 333 3 3 77 0 2 0 0 0 0 88 55 0 44444444444444 3 3 3 7 3 3 3 5 777777 77 3 0 3 3 00000 3 3 3 88 0 5 88 8 555555555555555555555555555555 0 8 2 8 000 0 666 66 7 7 888888 22 5 333 7 66 0 0 7 7 7 99 7 99 1111 33333333333 888888888 5 33 5 3 333 22222 4 7 000000 4 99 44 7 000 0 5 8 2 0 4 0 9999999999 111 7 11111 7 7 8888888888888888888888 8 8 00000 0 222222 000000000 00 2 555555 3 0 0 0 555 5 0 0 55 00 0 33 000 00000 0000 000 0
consensus : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGNGGGG---GG-GGGGGTTAAAATAAAAAACACAC-ACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCATATGTTAAACAT-----------TGT----TCA-CATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
Reference ( family-2550 ) : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGNGGGG---GG-GGGGGTTAAAATAAAAAACACAC-ACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCATATGTTAAACAT-----------TGT----TCA-CATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGTCCCGCA-GTAAA----GT--TTCTAGGC--ACGGACAAC--GGCCTACTT-AAACTTCAAAGTTTATCAAGGCACCAGGCTCATGTAAGT--CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAAAATA-TGCACAC----AC--TTTAATAACA-AGAAGTG---C-CAA-GCG-TTGTAAATT-ACAT-CAACGTGATATTAAGATAA-AGTTCTT-TTAGCAGAAA--TAGAACATTGG-TTGACC-TC-ATAGAGCATTCTTTTAC-G-TAAT-TTTTCTTAA--ATTTTAT-AT-ATTTTTT----GGTAGGGGCCTAGACCTAGATCCG-CGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAA-GATATT-AGAACCTCTTGTAACATTTTTGTC-AACTGAAAAGGA-GGGGGGGG-C-AA--ATATCCCCCCAC---------TTT-----AA-------AAAGTGGA-GAA----GGG---GT-GTGTGTTAAAA-ACAAAACACACAAAC--AC--AAAAA--AAAAGAACAGTCCAGA----T-TTTTCATTTAATGTTA--ATCATA-TGTT-AAAAA-TTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CAT---A-TGAATTTTCAC-CATAGTGTT---AACAT---ATTGTTTGA-TAGTTG-GC-CATA--TGTTAAACTTATCTT-T---GAAA-CAT-TATTGGTACATATGTTCA-AAAC--ATA--TA-TCAC-CAATA-TGATGAG--A-AAATCATATGTTAAACAT-----------------------ATG--TTCAATACAT-A-TGTTTAACATATGTAT-ATA--TTACAACAATATGGT----AAACAT
gi|11 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatTC-ATAGAGCATTTTT--AC-G-TCAT-TTTTTTTTTTTATTTTATTAT-TTTTTTTTGTTGG--------TATACCTAGATCTG-CGCGGTAAACT-CGGAGTAAAAAAAG--TTTTGC-AAAAGAAGGAat
gi|12 : GTGTTTTTTTTTATTCTAACCCCCACCCCTCCCTTTCTCCAC--TTTTT--AAAAAAGAGGGGGGGGGGTATTTCG---CCCCCCCCCC
gi|12 : GGGGGGGGG-CGAA--ATACCCCC---CCCCCTCTTTTTT-----AA-----A--AAGTGGA-GAAAGGGAGG---GGTGGGGGTTAGAATAAAAAA-AAAC-ACT----------A--AAAAAAATAGTCCAGGA--TT-TTTtaaaaaaaatagtccaggattttt
gi|13 : gAAAAACACAC-ACC--A---AAAAATAAAAAAAATCGTCAAGGA--TTTTTTTCGCTCTATGTTTTAATCATG-TGTT-CAACATTTTTA-CATGT-T-TATCATATGT-TTAAC--ATA-T
gi|14 : tAAAGTGGAAGAAGGGGGGG---GG-GGG---TAAAATAAAAAA-ACAC-CCC--CCCCAAAAA--AAAAGAATAGTCCAGGA---T-TTTTCATCATATGTTA--ATCATA-TGTT-CAA
gi|15 : AAA-CAT--GTTAA-ACATACATTCA-AAACA-AAT-GC--TCAA-A-ATA-TGAT--GATA-AAATCGTATGTTAAACAT-----------GTT----TCA-
gi|16 : CCCCAC--CTTTC--GAA-----GGGGGGGAGACATTTT----TCCCCCCCACCTTTTCGG-CGGACAAAa
gi|2 : GTGCTGCGAAT--ATTCTTCATTGC-AACTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCC-GCTAGGAATTTAAGT--TTCTAGGCGC--TGACTAT--G---TAGT---AACTTCAAAGTTTATCTAGGCACA-GGCAC-TGTAG-T--CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA-CTTTAACAATACTACACATCGATGC--TTTAATA---------TG---CACAC-AC---------TT-ACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGAAG--TAGAAC-TTGGCTTTAC-GTC-ATAGAGCATTTTTTTTT-GGTCAT-TTTTTTTTT--ATTTTATT-T-TTTTTTT----GG-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAGTTTT-GCAAAA-GAAGGAGAATTTAGTT-ATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGGCT-TT-AGAAC-TCT-GTAACATTT-GGTCAAACTGAAAGGGAGGGGGGGGGCCAAA--AGATCCCCA--C---------TTTA----AA-----AAAAAGTGGA-GAAGGTGGGG---GG-AGG---TAAAATAAAAAACACAC-ACCAAA---AAAAA--AAAAAAACAATC----ATTTT-TTTTCATTATATGTTAT-ATCATA-TGTT-CAAAATCTTTA-TATTT-TATATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGGCCATA--TGTGGAA-TTATGTT-T---GAAA-CATATGGTGA-ACATATGTTGATAAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-GAATC--ATGTTAAACAT-----------TGT----TCACCATGTTTTCAA-ACATCAGTG-TTAACATATGG-C-CAA--TTACAAACATATGTT----TAACATTAAGGTGAAAAAATCATGTTT-AACATATGTTAGCATATTGATAAAGATGCTTGTGTGTGTGTTTTTATTTT--CCCC--CCCCTCACCTTCTCCACCTTTTTCATAAAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAGA
gi|3 : cTATATATAATTACA-TTATATGAAGTTTACAAAGAT-TTTAGAACTT--TGTAACATATTGGTCAA-CTGAAAGGG-GTGAGGGGG-CAAATAACACCCCC---C---------TTTTTATCAAGTGCGAGAAAATGGA-G---GTGGGGGGGGG-GGGGGTTAAAAT-AAAAACACAC-ACC------AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTA--ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CATAG-A-AT--TTTT--CACTTATTGTTA--AACAT---A--GTT--G-AAGTTG-GT-CATA--TGTTAAACTTATGTT-TTTGAAAA-CATATGGTGA-GCATATATTCA-AAAC---TT-ATATTCACGC-ATA-TGAT--G--A-GAA
gi|4 : TTGCATCATATGTTA--ATCACA-TGTT-TAAA-TTTTTA-CATGT-C-TATCATATGT-TTAAC--ATG-C--TAAACATA------CAT-G-A-CT--TTTTCA-GCTTG-TGTT---AA-AC---T-TATCTAT-AAATTC-G--T-TA--TTCCAAAC--ATGTT-T---CAAA-CATATTCTAA-ACA-ACCTTTA-AAATACATA--T--CCAC-C-AAA-TTAT--GACA-AAATCATATGATAAACATATAAATTCCAATATCTAGTCA-CATGTT---AA-ACAT-A-TG------ATATGT-TGCTATTTTACCTGCGTATG------TAACAGTAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : ATGT-AT--TCATACTGTTTCAAAAATTTAACTATGTAT-CATCATGGATCTTAACCAATAATG-TTA----AGCATACCAT-G-AACT--TTTTCAC-CTTA-TGCTTAAAACATCCGA-TGTTTGG-AAGTTG-GT-CATACATGTTAAACTTATATT-T---GAAA-CATAGGTTGA-ACATATGTTCA-AAAC--ATA--TA-TTAC-C-ATAGTGATC-G--AGAAATCATATGTTAAA----------------------CA-CATATTTT--A-ACAT-Actttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|6 : cTTTAAT--TTTTTAAAATT-GGCACAC----CCCCTTTATTAACACAGAA-TTACTC-CAAAGCGGT-GTAAATTTACATTCAACG-GATATAATGATA---GTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGG-CGGTATTTTTTTTT--ATTTTATTATATTTATTT----GG-------
gi|7 : GTTTAA-AA--------CATA--TGTTAAAAATGTGCT-T---GAAATCAGTTGCTTT-ACATATGTTGA-AATCA-ATATGAA-T-AC---ATA-TGGTTTG--A-AAAGCATATGTTA--CCTGA---------TGC----TC-----GTTTTTAT----T-AGT--TAAACATATGT-T-CGA------AGACATA-GTTCTCTTAACAT-ATGTTGAACA---TATGCTTAAACATATGTTt
gi|8 : taATCATTCGTTA--ACCATA-TGTT-CAAAATTGTTA-TATGT-T------TATGT---------------TAA----A------CAT-GTA-TT--TTT--AAAC-----------AACAT---G-TGCTGGACAAGT--------------TTGAAC-TATGCTGT---AAGG-CATATGTTCA-ACATATGTTAA-AAACA-
gi|9 : CTGTGAATGGATC--TCATTAA-A--TACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAATAATTCTAGGCGCACTGACTACAAG---GAATTAAAACT---GACTTTATTGAGACATC-AACAC-T-TAGATTACAACATCAGCAAAAtgtgtttaaaatggtgggatgagaatacacaaaaaacacacatatgt
blockSeqs : GG C AAC C A TAAATAA GCA AAGGAATTA T T . . G ATTA TCAG TG A . G A G A C CGATGC ACACAGAATTACTCCAAAGCGGT T T . AC T CAC A C CA C T G G C A TT TA A TGTTGG G . T G T A A . . A A G . T TCT T A A AG C G TA CTTTTTATCAAGTGCGAG A A G GGG T GGT TA C . CCCC TA C TTT T TA C T T C A AT C CA TGT AGCATAC AGAAT C CA T T TAA CCGA T C TGTGGC A CA CT G TTG T A . C T AATATGAA GC G GAT G G ATAAATTCCAATATCTAGTCA CAAA C GTGTT TGCTATTT AA T TTCTCT T T T C . A G G . . A CT ATA AAAG GCAC TTT C
blockSeqs : . . A . A TTAAGT GC GTAGT . G . . . T AA . . CCCC TGCACACAC . . . . C G . . G . T . . C . . TA . GGC . . T . . . . . A A . . TTT . A . G . A . CCCCCTCTTTTTTAAA . G G . . GGT TA C . AAA . A T . T . . T . . T . . ATG ACATA GAACT C CA T . A A T . TGGT A . CT . . . A . G . AATAGTA A . GAC . A TGTTCAC AAA . GTTA CCAAT TG T TT . . G . .
blockSeqs : . . . . G . . T . . A . ACTTTAAAAA . G T . . . TA C . A . C T . T . . T . . T . . TG A GTATT C AA T . . A T . TGGT A . AA . . . A . C . AAATGC C . TTG . A GATGCTC TAT . TG TCGA GA . .
blockSeqs : . . T . . . T . . . . C T . . . . T . . T . . C A GATT . G T . . T T . TCG A . T . . . A . T . TTATAT C . CG . A GTTTCA AA .
blockSeqs : . . . . . . . . . . A . . C . . . A GACT . C . . . G G . . . . C . . . T . C . ACATAT C . G . . CA
blockSeqs : . . . T . . . . . . . . . . C . . . A . G . ATATA . . G .
blockSeqs : . . . . . . A .
blockSeqCons : *** TA A***** T** CA A**** TGG*** CT ATATAT**** C** NNTTCA**************** AAA**
originalCons : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGNGGGG---GG-GGGGGTTAAAATAAAAAACACAC-ACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACA-ATA-GTA-TCAC-C-ATA-TGAT--G--A-AAATCATATGTTAAACAT-----------TGT----TCA-CATGTTTTCAA-ACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
finalCons : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTAC-G-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAAGGNGGGG---GG-GGG---TAAAATAAAAAACACAC-ACCA-----AAAAA--AAAAAAATAGTCCAGGAT--T-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACATA----TGTTTGA-AAGTTGG---CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACATATAT----TCACC--ATA-TGAT--G--A-AAATCATATGTTAAACATNNTTCA----------------CATGTTTTAAA--CAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA
Alignments
lowQualScore : 11 3333 22222222 111 333333333333 1 1 2222 2222 11 1 1 1 1 1 22 1 44444444 55555555555555555555555555 1 1 1 22 1 111 1 11 1 2 1 11 1 44444444444444 1 1 1 111111 22 1 1 1 22 1 1 11 999999999999999999999999999999 11 222222 222222 111 22 1111 22222222222 111111111 11 1 111 11111 333333 111 111 22222 6666666666666666666666 1111 222222 222222222 222222 222 1 11 11 11 111 11111 3333 111
lowQualScore : 0 88 6 0 7777 6 7 33333333 222 444444444444 7 3 3 3 6 1111 9999 88 5 5 5 5 5 00 3 00000000 33333333333333333333333333 3 3 0 3 00 2 999 7 3 88 0 3 0 1 0 33 66 0 00000000000000 3 3 7 6 7 7 7 5 888888 00 7 2 3 3 6 22 7 7 7 99 0 0 33 0 444444444444444444444444444444 8 11 3 8 444444 6 888888 99 2 222 6 66 5 5 1 5 5 55 5 77 8888 44444444444 333333333 2 22 3 3 888 66666 1 5 000000 1 77 99 5 000 5 6 0 0 5 1 5 8 999 1 111 5 5 66 22222 5 1 3333333333333333333333 44 1111 8 555555 000000000 22 3 777777 7 1 1 1 111 5 1 1 88 88 1 88 999 77777 0000 666 1
lowQualScore : . .. . . .... . . ........ ... ............ . . . . . .... .... .. . . . . . .. . ........ .......................... . . . . .. . ... . . .. . . . . . .. .. . .............. . . . . . . . . ...... .. . . . . . .. . . . .. . . .. . .............................. . .. . . ...... . ...... .. . ... . .. . . . . . .. . .. .... ........... ......... . .. . . ... ..... . . ...... . .. .. . ... . . . . . . . . ... . ... . . .. ..... . . ...................... .. .... . ...... ......... .. . ...... . . . . ... . . . .. .. . .. ... ..... .... ... .
lowQualScore : 7 33 7 7 7777 7 3 33333333 333 333333333333 3 7 3 3 7 3333 3333 00 5 0 0 5 0 77 3 33333333 77777777777777777777777777 3 3 7 3 77 0 333 3 3 77 0 2 0 0 0 88 55 0 44444444444444 3 3 3 7 3 3 3 5 777777 77 3 0 3 3 7 00 3 3 3 88 0 5 88 8 555555555555555555555555555555 0 00 8 0 000000 7 000000 22 5 333 7 66 0 0 7 7 7 99 7 99 1111 33333333333 888888888 5 33 5 3 333 22222 4 7 000000 4 99 44 7 000 0 5 8 2 0 4 0 4 000 4 222 0 0 99 55555 0 7 5555555555555555555555 00 0000 0 222222 000000000 00 2 555555 3 0 0 0 555 5 0 0 55 00 0 33 000 00000 0000 000 0
consensus : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTACGGTNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTC-TGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAA--GGGGGGG-GGGGG---T--AAAATAAAAAACACACACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACATATA-T-TCAC-C-AT-A-T--GAT--G--A-AAATCATATGTTAAACAT---G-T------------TCA-CATGTTTT-AAACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
Reference ( family-2550 ) : NGTGCTGCGAAT--ATTCTTCGTTGC-A-CTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAGT--TTCTAGGCGCACTGACTAC--G---TANTT-AAACTTCAAAGTTTATCGAGGCACC-GGCAC-TGTAGGT--CAACA--AGCAAAACTCTGGCGTTCTTAAGGCATCTAGCGTCACCGATGACGTCACACAAACCTCTCAGTACGCAAGAGGCACGGATCTAATA-TTTTTAAAATA-TGCACAC----GC--TTTAATAACA-AGAA-TG---C-CAA-GCG-T-GTAAATT-ACAT-CGACG-GATATAATGATAA-AGTTCTTCTTAGCAGAAN--TAGAACATTGG-TTTACCGTC-ATAGAGCATTTTTTTACG-TNAT-TTTTTTTTT--ATTTTATTAT-TTTTTTT----GG-------CTATACCTAGATCCG-CGCGGTAAACT-CGGAGTAAAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATAATTACA-TTATATGAAGTTTACAAGGAT-TT-AGAACCTCTTGTAACATTTTGGTCAAACTGAAAGGGAGGGGGGGGG-CGAA--ATACCCCC---C---------TTT-----AA-----AGAAAGTGGA-GAA--GGNGGGG-GGGGG---T--AAAATAAAAAACACACACC--A---AAAAA--AAAAAAATAGTCCAGGA--TT-TTTTCATCATATGTTAT-ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTG-G--CATA--TGTTAAACTTATGTT-T---GAAA-CATATGTTGA-ACATATGTTCA-AAACATATA-T-TCAC-C-AT-A-T--GAT--G--A-AAATCATATGTTAAACAT---NNT------------TCA-CATGTTTT-AAACAT-AGTG-TTAACATATGT-T-CNA--TTACAAACATATGTT----TAACATTANGNTGAANAAATCATGCTTAAACATATGTTAGCATATTGATAAAGATGCTTGTGTGTNTNTTTTTATTCTAACCCCCACCCCTCNCCTTCTCCAC--TTTTC--GAAAAAG-GGGGGGGAGGTATTTTG---CCCCCCCCCCCTTTTCGGTCGGACNAAAATGTTACAGA
gi|1 : GTGCTGTGAAT--ATTCTTAGTTGCTATCTGTTGTGCATTTCGTCCACTGATGTAATCAGTGGGGTCCCGCA-GTAAA----GT--TTCTAGGC--ACGGACAAC--GGCCTACTT-AAACTTCAAAGTTTATCAAGGCACCAGGCTCATGTAAGT--CAACA----CAAAACTT--ACGTTCTTA-GGCATCTAGCGTCACC-ATGACGTCACACAAACCTCTCAGTACGCAAGAGGC-CG-ATCTAATAATTTTTAAAATA-TGCACAC----AC--TTTAATAACA-AGAAGTG---C-CAA-GCG-TTGTAAATT-ACAT-CAACGTGATATTAAGATAA-AGTTCTT-TTAGCAGAAA--TAGAACATTGG-TTGACC-TC-ATAGAGCATTCTTTTACG-TAAT-TTTTCTTAA--ATTTTAT-AT-ATTTTTT----GGTAGGGGCCTAGACCTAGATCCG-CGCCATAAACTGCGGAG--AAAAAAAGTTTTTGCAAAAAGAAGGAGGATTTAGTTTATAAATAATTATACTTATAGTTATGTATGATTACAGTT------AGTTTACAA-GATATT-AGAACCTCTTGTAACATTTTTGTC-AACTGAAAAGGA-GGGGGGGG-C-AA--ATATCCCCCCAC---------TTT-----AA-------AAAGTGGA-GAA--G--GGGT-GTGTG---TTAAAAACAAAACACACAAACA--C---AAAAA--AAAAGAACAGTCCAGA----T-TTTTCATTTAATGTTA--ATCATA-TGTT-AAAAA-TTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CAT---A-TGAATTTTCAC-CATAGTGTT---AACAT---ATTGTTTGA-TAGTTG-GC-CATA--TGTTAAACTTATCTT-T---GAAA-CAT-TATTGGTACATATGTTCA-AAACATATA---TCAC-CAAT-A-T--GATGAG--A-AAATCATATGTTAAACAT-----------------------ATGTTCA-ATACAT-A-TGTTTAACATATGTAT-ATA--TTACAACAATATGGT----AAACAT
gi|11 : tatgcttctgtaatactaatgccgaatacgcaaaagctagtgccatatgcgctgctatagatttttgtacagtgttaacacacgtatgtttgtcatacaatacatccgatcgtgttgtgattacccttctctcctagttctactgctcagttccgataatttattatgtaatgcttaagttaaacttgatttaggcctaatttactttaaatgtaagtcttattacagttcttttttttttcctacttactgcaagaaagtctttctctccagtctccctgacatgcgattcgactgtttctcagaacgtgcatTC-ATAGAGCATTTTT--ACG-TCAT-TTTTTTTTTTTATTTTATTAT-TTTTTTTTGTTGG--------TATACCTAGATCTG-CGCGGTAAACT-CGGAGTAAAAAAAG--TTTTGC-AAAAGAAGGAat
gi|12 : GTGTTTTTTTTTATTCTAACCCCCACCCCTCCCTTTCTCCAC--TTTTT--AAAAAAGAGGGGGGGGGGTATTTCG---CCCCCCCCCC
gi|12 : GGGGGGGGG-CGAA--ATACCCCC---CCCCCTCTTTTTT-----AA-------AAAGTGGA-GAAAGGGAGGGGTGGGGGT--T--AGAATAAAAAA-AAACACT----------A--AAAAAAATAGTCCAGGA--TT-TTTtaaaaaaaatagtccaggattttt
gi|13 : gAAAAACACACACC--A---AAAAATAAAAAAAATCGTCAAGGA--TTTTTTTCGCTCTATGTTTTAATCATG-TGTT-CAACATTTTTA-CATGT-T-TATCATATGT-TTAAC--ATA-T
gi|14 : tAAAGTGGAAGAA--GGGGGGG-GGGGG---T--AAAATAAAAAA-ACACCCC--CCCCAAAAA--AAAAGAATAGTCCAGGA---T-TTTTCATCATATGTTA--ATCATA-TGTT-CAA
gi|15 : AAA-CAT--GTTAA-ACATACATTCA-AAACAAATG-C-TCAA-A-AT-A-T--GAT--GATA-AAATCGTATGTTAAACAT---GTT------------TCA-
gi|16 : CCCCAC--CTTTC--GAA-----GGGGGGGAGACATTTT----TCCCCCCCACCTTTTCGG-CGGACAAAa
gi|2 : GTGCTGCGAAT--ATTCTTCATTGC-AACTGTTGTGTATTTCGTCCACTGTTGTAATCAGTGGGGTCC-GCTAGGAATTTAAGT--TTCTAGGCGC--TGACTAT--G---TAGT---AACTTCAAAGTTTATCTAGGCACA-GGCAC-TGTAG-T--CAACA--AACAAAACTCTGGCGTTCTTAAGGCATCTA-CGTCACCGATGACGTCACACAAACCTCTCAATACGCAAGAGGCACGGATCTAATA-CTTTAACAATACTACACATCGATGC--TTTAATA---------TG---CACAC-AC---------TT-ACAT-CGACG-AATATAATGACAACAGCTCTTTTTAACAGAAG--TAGAAC-TTGGCTTTAC-GTC-ATAGAGCATTTTTTTTTGGTCAT-TTTTTTTTT--ATTTTATT-T-TTTTTTT----GG-------CTATACCTAGATCCGGCGCGGTAAACT-CGGAGTAAAAAAAAGTTTT-GCAAAA-GAAGGAGAATTTAGTT-ATAAATAATTATATTTATA------TATAATTAC--TTATATGAAGTTCACAAGGCT-TT-AGAA-CTC-TGTAACA-TTTGGTCAAACTGAAAGGGAGGGGGGGGGCCAAA--AGATCCCCA--C---------TTTA----AA-----AAAAAGTGGA-GAA--GGTGGGG-GGAGG---T--AAAATAAAAAACACACACCAAA---AAAAA--AAAAAAACAATC----ATTTT-TTTTCATTATATGTTAT-ATCATA-TGTT-CAAAATCTTTA-TATTT-TATATCATATGT-TTAAC--ATA-TG-TAA----A------CAT-G-A-TT--TTTTCACACTTA-TGTT---AACAT---A-TGTTTGA-AAGTTGTGGCCATA--TGTGGAA-TTATGTT-T---GAAA-CATATGGTGA-ACATATGTTGATAAACA-ATAGTATCAC-C-AT-A-T--GAT--G--A-GAATC--ATGTTAAACAT---TGT------------TCACCATGTTTTCAAACATCAGTG-TTAACATATGG-C-CAA--TTACAAACATATGTT----TAACATTAAGGTGAAAAAATCATGTTT-AACATATGTTAGCATATTGATAAAGATGCTTGTGTGTGTGTTTTTATTTT--CCCC--CCCCTCACCTTCTCCACCTTTTTCATAAAAAAG-GAGGGGGAGGTATTTTGCACCCCCCCCTCCCTTTTCAGTTTGACCAAAATGTTACAGA
gi|3 : cTATATATAATTACA-TTATATGAAGTTTACAAAGAT-TTTAGAACTT--TGTAACATATTGGTCAA-CTGAAAGGG-GTGAGGGGG-CAAATAACACCCCC---C---------TTTTTATCAAGTGCGAGAAAATGGA-GGT--GGGGGGG-GGGGGGGTT--AAAATAAAAA-CACACACC--A---AAAAA--AAAAAA-TAGTCCAGGA--TT-TTTTCATCATATGTTA--ATCATA-TGTT-CAAAATTTTTA-TATGT-T-TATCATATGT-TTAAC--ATA-TGTTAA----A------CATAG-A-AT--TTTT--CACTTATTGTTA--AACAT---A--GTT--G-AAGTTG-GT-CATA--TGTTAAACTTATGTT-TTTGAAAA-CATATGGTGA-GCATATATTCA-AAACTTATA-T-TCACGC-AT-A-T--GAT--G--A-GAA
gi|4 : TTGCATCATATGTTA--ATCACA-TGTT-TAAA-TTTTTA-CATGT-C-TATCATATGT-TTAAC--ATG-C--TAAACATA------CAT-G-A-CT--TTTTCA-GCTTG-TGTT---AA-AC---T-TATCTAT-AAATTC-G--T-TA--TTCCAAAC--ATGTT-T---CAAA-CATATTCTAA-ACA-ACCTTTA-AAATACATA-T-CCAC-C-AA-A-T--TAT--GACA-AAATCATATGATAAACATATAAATTCCAATATCTAGTCA-CATG--TT-AAACAT-A-TG------ATATGT-TGCTATTTTACCTGCGTATG------TAACAGTAatnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatattaaacatatgcgaaaccatatgttgccaagtttacct
gi|5 : ATGT-AT--TCATACTGTTTCAAAAATTTAACTATGTAT-CATCATGGATCTTAACCAATAATG-TTA----AGCATACCAT-G-AACT--TTTTCAC-CTTA-TGCTTAAAACATCCGA-TGTTTGG-AAGTTG-GT-CATACATGTTAAACTTATATT-T---GAAA-CATAGGTTGA-ACATATGTTCA-AAACATATA-T-T-AC-C-AT-AGT--GATC-G--AGAAATCATATGTTAAA----------------------CA-CATATTTT--AACAT-Actttactgtaacctgaccataaggaaattgtatcgttagataatgaaagcagat
gi|6 : cTTTAAT--TTTTTAAAATT-GGCACAC----CCCCTTTATTAACACAGAA-TTACTC-CAAAGCGGT-GTAAATTTACATTCAACG-GATATAATGATA---GTTCTTCTTAGCAGAACACTCGAACATTGG-TTTACCATCCATAGAGCATTTCTTTACGGCGGTATTTTTTTTT--ATTTTATTATATTTATTT----GG-------
gi|7 : GTTTAA-AA--------CATA--TGTTAAAAATGTGCT-T---GAAATCAGTTGCTTT-ACATATGTTGA-AATCA-ATA-T-GAATAC-AT-A-T--GGTTTG--A-AAAGCATATGTTA--CCT---GAT------------GCT-CGT-TTTT-AT---T-AGT--TAAACATATGT-T-CGA------AGACATA-GTTCTCTTAACAT-ATGTTGAACA---TATGCTTAAACATATGTTt
gi|8 : taATCATTCGTTA--ACCATA-TGTT-CAAAATTGTTA-TATGT-T------TATGT---------------TAA----A------CAT-GTA-TT--TTT--AAAC-----------AACAT---G-TGCTGGACAAGT--------------TTGAAC-TATGCTGT---AAGG-CATATGTTCA-ACATATGTTAA-AAACATGTG-T-TTAA-A-ATGG-TGGGAT--G--A-GAAT
gi|9 : CTGTGAATGGATC--TCATTAA-A--TACTGTGTATCTAGTCCACTGTTGTAATCAGTGGGGTCCCGCAAGTAAAT-AAATAATTCTAGGCGCACTGACTACAAG---GAATTAAAACT---GACTTTATTGAGACATC-AACAC-T-TAGATTACAACATCAGCAAAAacacaaaaaacacacatatgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): TTATGGAAATTCATAGACAAAGTCATATATTTATTCCAGTCTATGATAAATATCATGTATTTATCAAATGAGCTGTTTATTATGATCTGAGTGTATCACATTGATGAGATTGTCAATTTGCAA