lowQualScore : 1 22 111 3333333 111 111 11 22 1 1 44 6666666666 1 1 1 1 1 2222222 1111111111111 1 11 11 1 2 1 1 11 22 1 1 1 11 222 11 1 33333333 1 1 1 1 11 1 1 1 333 111 1 2 1 1 1 4444444444444 1 11111 22222222222222 1 1 1 8888888888888888888888888888888888 11 1 1 22 33 11111 22222222 2222 111 55555555555555555 11 11 1 55555555 11 111 1 111 11 2222 1 33333 11 1 333 1111 1 33 88888888 222222222 111 11 8888888888888888888888888 555555 22 22 1 222 2 66666666666666 222 4 333 1 22222
lowQualScore : 88 0 1 77 8 0 111 6666666 222 8 444 8 44 1 8 55 00 3 1 4 0 1 33 9 3 5 33 1111111111 4 5 0 3 6 0 5 0 8888888 55 77 1 8888888888888 0 7 22 44 0 0 3 3 0 6 6 0 5 33 3 77 0 7 6 55 5 0 33 666 3 2 0 0 0 1 3 33 0 8 0 6 00000000 0 2 0 0 0 3 0 33 0 0 0 0 111 111 1 2 6 1 0 55 0 0 55 1111111111111 0 9 33333 9 22222222222222 2 0 0 0 4444444444444444444444444444444444 33 0 6 33 5 8 8 00 22 11111 0 3 99999999 8 8 8 2 8 1111 8 444 8 8 33333333333333333 11 3 11 6 0 0 6 6 3 3 33333333 6 6 8 22 3 777 3 6 6 111 00 5555 1 5 5 11111 9999 33 6 5 2 5 5 333 1 6 77 2222 5 1 5 33 5 7 22222222 555555555 555 33 11 7 0 9 0000000000000000000000000 4 333333 0 00 0 77 5 666 0 22222222222222 2 666 0 6 666 6 7 44444
lowQualScore : .. . . .. . . ... ....... ... . ... . .. . . .. .. . . . . . .. . . . .. .......... . . . . . . . . ....... .. .. . ............. . . .. .. . . . . . . . . . .. . .. . . . .. . . .. ... . . . . . . . .. . . . . ........ . . . . . . . .. . . . . ... ... . . . . . .. . . .. ............. . . ..... . .............. . . . . .................................. .. . . .. . . . .. .. ..... . . ........ . . . . . .... . ... . . ................. .. . .. . . . . . . . ........ . . . .. . ... . . . ... .. .... . . . ..... .... .. . . . . . ... . . .. .... . . . .. . . ........ ......... ... .. .. . . . ......................... . ...... . .. . .. . ... . .............. . ... . . ... . . .....
lowQualScore : 22 0 2 00 0 6 888 4444444 444 0 000 0 22 4 0 22 22 0 0 8 8 8 88 0 3 5 55 5555555555 0 0 0 2 5 0 5 2 0000000 88 22 2 8888888888888 0 0 22 88 0 0 2 2 0 0 0 0 0 88 2 00 0 8 2 00 0 2 88 888 2 0 8 2 2 2 2 88 5 8 2 5 88888888 0 5 0 0 0 2 2 88 8 0 0 0 222 000 5 5 0 2 0 00 0 0 22 0000000000000 0 2 00000 0 55555555555555 5 0 0 0 5555555555555555555555555555555555 88 0 0 22 0 0 0 00 66 22222 8 2 00000000 0 0 0 8 0 0000 0 000 0 0 22222222222222222 00 0 00 7 7 8 7 7 3 5 88888888 7 7 0 88 0 777 5 7 7 777 88 7777 7 7 7 11111 6666 66 0 7 1 7 7 000 4 0 99 1111 7 4 7 11 7 3 11111111 333333333 999 99 44 9 8 0 0000000000000000000000000 0 555555 7 55 7 88 2 555 0 55555555555555 5 000 0 0 000 0 0 00000
consensus : CTGTGCTAGCGACAGGCATTGG-CACGTT-AAAAA-CATC--ACTGTTA-AG--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTT-NGTGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAANACAACAANCATTNTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-NCCGNAGACTGANCTACTGA--CNACGNAA-GTAGT-GCACGCC-ATGGAGGAGCGA-ATGTTAAACATTGTC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATCG-GAAT-CANAATCGTAAACGTCGTCAGTATCACC-GAAAGTGCTATCTACAACATCGTGGTTAACGTATATATC--AAATTTGGTTTGTCCACGGGNCCCGN-TA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT-G-G-GGG-CTG-T-GAANACTCCGCTATATTCGCTGTAACCTCCACC-AGATTTGTTTT-CACGACA-TCG-AANTTTAA-GGNAGT--AATGAATGCTT-GGATTTGGCTCA-TTC-TGACTCANG--TANGCAT---AGAAGGCA-ACA-GGCTCAGGGGA-TGTCCTT----GT---GTGTC--------------------GTATT--C-GTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GT-TTTGTATCGT--------CT-CTT-C-TTCACTG-TCAN--TGTT-TCCT---CGA-A-TTTCGTCAT----CGTGAC-CG---GGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTT-GTCCACGTC-GGC-GCGCA-GAACCCTG-T-CTCACTTCTGA-GTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--C-GCGC-GTATTTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTT-A-ACAC--ACAAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAAGTTTGTCCGCGTG---GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATGACGC--NATC--TTTGTATGGAAGG----GAACANTTGATAAGAAC---AAAACGGTAGATTT-TCACCATTAGNNAAGTAAACCAAGATCACGTTACCGA-AGACANATATCAAAACTAAATAGAATGTATAGGCCCCACATCTTTCTACATT
Reference ( gi|2 ) : CTGTGCTAGCGACAGGTGTTGG-CACAT--AAAAA-CATC--ACTGTTACAG--CACTGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCT-AGTGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA-----ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCGGTGACTGGATTACTAA--TAACATAA-GCAGT-GCATGCT-ATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATCA-GAAT-CAAAATCGTTAACGTCTTCAGTTTCACC-GTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAG-TA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-G-G-G---CTG-T-AAATATTCCGCTATATTCGCTGTAACCTCCGCCCAGATTTGTTTT-CACGACA-TCG-AATTTTAA-GGGAGT--GATTAATGCTT-GGATTTGGCTCA-TCC-TTACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGA-TGTCCTT----GTG--GTGTC--------------------GTATT--C-GTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GT-TTTGTATCGT--------CT-CTT-C-TTCACCG-TCAA--TGTT-TCCT---CGA-A-TTTCGTCAG----GATGA--CA---GGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTT-GTCCACGTC-AGC-GCGCA-AAATCTTA-T-CTCACTTCTCA-GTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--A-GCAC-GTATTTTGCGAAAATCTCCTTTTCGACA--TAGCTATTCGCAGAAC-ACGTTGTT-A-ACAC-TCCAAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAGGTTTGTCTTCATC---GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATGACAC--CATC--TTT-TATGGAAGGA---GAACAATTGATAAGAACACCAAGACAGTGGATTTCCCACAATTAGTC-AGT-AACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATAATACCCGCAACTTCTTGAATT
gi|12 : CTGTGTTAGCGACAGATATTGG-CACGTC-AAAAG-CATC------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTT-TGTGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|15 : cCTGTGCTAGCGACAGACATTGACCACTT--AAAACTCAAT--ACTGTTAAAA--CCCTGAG--CGCC---CC-AAAATTAGa
gi|3 : GCTAGTGACAGGCATTGA-CACATT-AAAAA-CCTC--ACTGTTGCTG--CCCTTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTT-CGTGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAACA-----AACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTAGACTGAATTACTAA--CTATCTGA-GTAGT-GCTTGCC-ATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATCA-GAAT-CAATGTCGTTAGCTTCGTCAGTATCACC-GAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTC-CAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCTGG-G-G---CTG-T-GAACACCCCGCTATATTCATTGTAACCTCCACCCAGATTAGTTTT-CACGACA-TCG-AATTTTAA--GGAGT--AATTTATGCTT-GGATTTGGCTCA-TTC-TGACTCAAA--TACGCAT---AGAATGCA-ACA-GGCTCAGGAGA-TATTCTT----GT---GTGCC--------------------GTATT--C-GTT-TCTCGTCA-GACTCT-GA-GAT-CATATTAAGTTTCTG--GT-TTTGTATCGT--------CT-CTT-C-CTCACTG-TCAT--TGTT-TCCT---CGA-A-TTTCGTCAT----CGTGAC-CG---GGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCAGA-TT-GTCCACGTC-GGC-GCGCA-GAATCCTATT-CTCACTTCTGA-GTTCTTTG-ATTTCCCTTTTCTGGC---GGTCAAGAGT--T-GCGC-GTA-TTTGCG-AAATCTCCTTTTCGACA--TAACTATCCGCAGAAC-ATATTGTT-A-ACAC-AAC-AAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACGTAAG--T--GTTTGTCTGCATG---GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATGACAC--TATC------------AGGAACTGAACAATTGATAAG
gi|1 : TAGTGACAGGCATTGG-TACATTTAAATA-TCTC--ACTGCTA-AGACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAA-------------A-GGT-AAA--AAAGAAAAACAACAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCGAAG-CTGAATTACTAAACTACCGCAG-TAAGT-GCACGTC-ATGGAGGAGCTACATGTTACACAT-GTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAAGAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCAC-TATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT-GCG-GGGCCTG-T-GAAAATTCCA-TATAATCGTTATAACCTCCACC--GATTTGTTTT-CA-GACAGTCA-AGTTTTAATGAGAAA--ACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGC-CACCTAAGAAGG-A-ACAGGGCTCAGGGGA-TGTCCTT----GT---GTGTC--------------------GTATT--C-GTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAAC-TTTGTATC-T--------CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCTCG-TGACTCA---GGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTT-G-CCACGTCAAGC-GCGCAGAAGCCCTA-T-CTCACTTCTGA-GTTCTTTG-ATTTCCCTTTCCTGGC---GGGTAA-AAT--ACGCGCGGTATTT--CCAAAATCTCTCCCTCGACAGTCAAATATTCGCAGAAC-A-GGTGTT-A-ACAC-ACAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGAGTTTGTCAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATG-CACCACATC--TTT-TA-GAACGG------ACAAT--GTAAGAACACC-AGACAGTGGCTTTCCAAT-ATCAGTCAAGTAAACCAAG---ATGTTACCGA-AGACAGAT-T-AAAACTAAATAGAATGTATAGGCCCCACATCTTTCTACATT
gi|13 : tT--AATAA-TATCCCATTGTTATGG--CCCTGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCT-GGTTATATCTCAGTATGACTGAAAAATTCTCAgatgaacctgccattttcgtccacagtgctaacggt
gi|16 : T-AATACTTCATGTACAGCT-TGTGACCTGTCAATTTGAATGACAAATTCTCagc
gi|5 : AGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTC--TGA-TGGCCAACTGA--CAACAGAA-GTAGT-GCATGCC-ATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC--GAAT-CATAATCGTAAACGTCGTCAGTATCACT-GAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAAT-TGGTTTGTCCACGGAAC-CAC-TA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT-G-G-GGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCACTGAAATTTGTTTT-CACGACA-TCGAAAACTTAA-GGT-GT--AATGAATGCTT-GGATTTGGTTCA-CTA-TGACTCATG--TAGGCAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTT----GT---GTGTC--------------------GTATT--C-GTT-TCT-GTCA-GACT-T-GA-GAT-CATATTAAACTTCTG--GT-TTTCTATCGT--------CT-CTT-C-TTCACTG-TCAT--TGTT-TCCT---CGA-A-TTTCGTCAT----CGTGAC-CG---GGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTT-GTCCACGTC-GGC-GCGCA-GAACCCTGTT-TTCACTTCTGA-GTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGTGT--T-GCAC-GTA-TTTGT-AAAATCTCACTCTCGACA--TAACTATCCGCAGAACAATATTGTT-A-ACA---ACAAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTTA----AAGTTTG-CTGCATG---GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATGACAC--TATC-------ATGAACT-----GAACAATTGATAAGAACACC-AGACAGTGAA-TTGTCACAATTAGAG-AGT-AACTAAGATCACG---CTGA-AGACATATATCAAgatagggtgtaa
gi|4 : caAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAGG-GACTGCCCCACTGA--TTACAGAAAGTAGTTGCA-GTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TCGCGAGT-CATAATCGT-AA-----TTAGTT-CTCC-A-AAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGG-TAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT-G-GCG---CTGCT-AAAAATTCCGCTAAATCCGCTGTAACCTCCACC-AAATTTATGATACAC-ACA-TCA-AAAATTAA-GGT-GTCGGA--AGGGCTT-GGATTTGGTGCA-TTCGTTACTCATG--TAGGT------GAAGGCAGACA-GGCTCGGGGGG-TGTCCTTGGCTGTGACGTATCCGATCATTGAGTGAAATTAGGTATTATCAGTCGTGTCGTCAGACTTCTTGA-GAAC----TTA---TTCTG--TTGCTTG-ATCATTATTAGTACT-CTTTC-TTCACTG-TT----TGTTGTCATGTACGACA-TTTCATCAT----TACGT--CATCGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCGTGA--GTTT-GTCCACATC-AGCCGCGCA-GAATCCTG-TTCTCGCCTCTTAAGTTCTTTGCATTTCC-TTTCTAGGAAAGGG--GAGAGTTTC-GCGC-GTATTT---GTAAATCTCTCTCTCGACAA-TAACTATT-GCAGAAC-ATGTCGTT-A-ACACATCCAAAAA-TCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TA-ATTTGTCCGCGTG---GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATGATGC--AAAG--TTTGTAT---AGG----GAACATTTGATAAGA-----AAAAC--TAGATTT-TCACCATTttatttttaattcttct
gi|8 : gaaacaagaacatcaagaacaTT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GT-TTTGTATCGT--------CT-CTT-C-TTCACCG-TCAA--TGTT-TCCT---CGA-A-TTTCGTCAG----GATGAC-CA---GGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTT-GTCCACGTC-cgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCGC-------GTTTAGTCCACGTC-AGT-GCGCA-CAACCTTG-TTCTCACTTCTGA-GTTCTTTG-ATTTCCCTTTCCTGGC---GATAAAGAGT--C-GCAC-GTA-TTTGT-AAAATCTCTCTATTGACA--TAATTATTCGCAGAAC-ATGTTGCT-A-ACAC--ACAAGAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|10 : -T-CTCACTTCTGA-GTTCTTTG-ATTTCCCTGTCCTGAC---GGGTAAGAGT--C-GCGC-G-AATTTGC-AAAATGTCTCTCTCAACA--TAACTATTCGCAGAAC-ATATTGTTCATACAC-T---AGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAGA--------------------GTTTGTAACCACT---GTACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATGACAC--CA-C--TAT-TG-AGAACG----GAAGATTTGATAAGA-----GAAACGGTAGATT
gi|9 : ccctgtAAGAAT--C-GCGC-GTATTT--CCAAAATCTCTCCCTCGACA--TAAATATTCGCAGAAC-AGGTTGTT-A-ACAC--ACAAAAAAattac
gi|6 : tAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTTAATCT----TTGTCCGCGTG---GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATGATGC--AATCAGTTTGTATAG--------GAACATTTGATAAGA-----AAAAC--TAGATTT-TCACCATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA-TTTGTCCGCGTG---GAATGACGGAAAACACACA-GAGGTCAATTCTTATCTTGCCTGCAATGATGC--AAAG--TTTGTAT---AGG----GAACATTTGATAAGA-----AAAAC--TAGATTT-TCACCATTcgagaacaactatgtcacattaaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATGACAC--CATC--TTT-TATGGAACG----GAACAATTGATAAGAACcgagaacaactactgtcaattaaaatcacgttatttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|14 ): TAGACCATTGGAATACATACACGCCACTTCCGGGTGCTGTGAAGACCCCAGTATGAGCATCGTATCCACGGTTAATGTTTTC
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC
Alignments
lowQualScore : 111 33333333 111 11 22222 1 1111 111 2 11 111 11 1 3333 11111 22 11 111 1111111 11 11 11 111 111 111111 1 111 111 1111 1111 1 2222222222 1 11 11 3333333333 33333333 11 666666666666666 1 1111 11 11
lowQualScore : 8 9 1 000 99 11111111 99 6 111 6 1 8 1 1 8 444 00 3 0 99999 99 444 8 0 8 0 99 2222 22 8 1 555 8 8 4 0 8 0 11 8 8 1 11 0 555 8 1 1 3 6 8 0 0 11 5 5 1 888 6 8 8 6 6 5 99 0000 6 6 77 2 44444 99 6 8 99 77 11 3 8 5 111 1 1 4444444 8 8 8 11 8 8 66 2 6 6 66 99 99 6 6 6 6 6 000 6 111 6 6 999999 77 6 99 4 5 5 1 1 5 1 66 6 5 999 5 5 000 66 66 5 9 0000 5 66 5 2 5 5 55 66 0000 5 0 5 5 5 0 8888888888 66 0 66 33 4 00 1 4 1 1 1111111111 5 4 1 55555555 99 5 1 3 111111111111111 0 2 3 4444 44 88
lowQualScore : . . . ... .. ........ .. . ... . . . . . . ... .. . . ..... .. ... . . . . .. .... .. . . ... . . . . . . .. . . . .. . ... . . . . . . . . .. . . . ... . . . . . . .. .... . . .. . ..... .. . . .. .. .. . . . ... . . ....... . . . .. . . .. . . . .. .. .. . . . . . ... . ... . . ...... .. . .. . . . . . . . .. . . ... . . ... .. .. . . .... . .. . . . . .. .. .... . . . . . . .......... .. . .. .. . .. . . . . .......... . . . ........ .. . . . ............... . . . .... .. ..
lowQualScore : 0 6 7 888 22 77777777 22 7 777 7 0 0 4 0 0 666 22 0 2 00000 88 888 0 8 0 6 00 6666 88 0 0 444 0 0 6 6 0 4 66 0 0 4 00 8 666 0 0 4 8 0 0 8 8 00 6 0 0 888 0 0 0 7 7 2 22 8888 7 7 77 5 22222 22 7 0 00 22 00 2 0 6 000 0 0 8888888 0 0 0 00 0 0 00 5 7 7 00 22 22 7 7 7 7 7 222 7 777 7 7 888888 77 7 22 3 7 7 4 7 7 4 44 7 7 666 7 7 000 66 99 0 4 5555 0 99 0 0 0 0 22 99 6666 0 0 0 0 0 1 8888888888 99 0 99 88 2 88 1 4 7 0 4444444444 7 4 0 66666666 00 7 0 0 333333333333333 7 5 3 7777 77 77
consensus : CTGTGCTAGCGACAGGCATTGG-CACATTAAAA-A-CATC--ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAACA-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTAC-CGAAGT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAATACG-CAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTG-TTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTATTTCGC-AAAATCTCTCTCTCGAC-A--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATGGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTNGAGAA--------GTCAACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATAN-CCCCGCATCTTTCTACATT
Reference ( family-2485 ) : CTGTGCTAGCGACAGGCATTGG-CACGTTAAAA-A-CATC--ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAANACAACAANCATTNTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-NCCGNAGACTGANCTACT-GACNAC-GNAAGT-AGT-GCACGCCATGGAGGAGCGA-ATGTTAAACATTGTC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATC--AAATTTGGTTTGTCCACGGGNCCCGNTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAN-TTTAAGGNAGTAA--TGAATGCTT-GGATTTGGCTCATT-C-TGACTCANGTANG-CAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACTG-TCA--NTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTG-T-CTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTATTTTGC-AAAATCTCTCTCTCGAC-A--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCNATC--TTTGTATGGAAGG-GAACANTTGATAAGAA---CA--AAACGGTAGATTT-TCACCATTAGNNAA--------GTAAACCAAGATCACGTTACCGA-AGACANATATCAAAACTAAATAGAATGTATAGGCCCCACATCTTTCTACATT
gi|1 : TAGTGACAGGCATTGG-TACATTTAAATA-TCTC--ACTGCT-A-A-GACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAAAGGT-----------------AAAAAAGAAAAACAACAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCGAAG-CTGAATTACTAAACTAC-CGCAGTAAGT-GCACGTCATGGAGGAGCTACATGTTACACA-TGTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAA-GAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCACTATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT--GCGGGGCCTG-TGAAA-ATTCCA-TATAATCGTTATAACCTCCA-CC--GATT--TGTT-TTCA-GACAGTCAAGT-TTTAATG-AGAAAACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGCCACCTAAGAAGG-A-ACAGGGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAACT--TTGTATC-T-CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCT--CGTGACTCAGGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTTG-CCACGTCAAGC-GCGCAGAAGCCCTA-T-CTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGGTAAAATA--CGCGCGGTATTTC-C-AAAATCTCTCCCTCGAC-AGTCAAATATTCGCAGAAC-A-GGTGTTAACAC-A-CAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGA--GTTTGT--CAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATGCACCACATC--TTT---TAGAACG-G-ACAAT--GTAAGAA---CACCAGACAGTGGCTTT-CCAATATCAGTCAA--------GTAAACCAAGAT---GTTACCGA-AGACAG--ATTAAAACTAAATAGAATGTATAGGCCCCACATCTTTCTACATT
gi|10 : t-CCCTG-TTCTCACTTCT-GAGTTCTTTG-ATTTCCCTGTCCTGAC---GGGTAAGAGT--CGCGC-GAATTT-GC-AAAATGTCTCTCTCAAC-A--TAACTATTCGCAGAAC-ATATTGTTCATAC-A-C-TAGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAG--------------------A--GTTTGTAACCACTGT-----ACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATG-ACACCACT--ATTG---AGAACG-GAAGATTTGATAAGA-----G--AAACGGTAGATTA-TTACgatgaacctgccattttcgtccacagtgctaacggt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCG-CGTTTA-GT----CCACGTC-AGT-GCGCACAA-CCTTG-TTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GATAAAGAGT--CGCAC-GTA-TTTGT-AAAATCTCTCTATTGAC-A--TAATTATTCGCAGAAC-ATGTTGCTAACAC-A-C-AAGAAA
gi|12 : CTGTGTTAGCGACAGATATTGG-CACGTCAAAA-G-CATC--------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTTTG-TGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|13 : cTAATA-A-TATCCCATTGTT-ATG-G--CCCTGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCTGG-TTATATCTCAGTATGACTGAAAAATTCTCAAa
gi|14 : -GAATA-CATACACGCC-----ACTTCCG-GGTG-CTG-TGAAG-ACCCCAGTATGAGCATCGTA---TCCA-C---GGTTAATGTT-TTCgc
gi|15 : tagaccattgCTGTGCTAGCGACAGACATTGACCAC-TTAAAA-CTCAAT--ACTGTTAA-A-A--CCCTGAG--CGCC---CC-AAAATTAG
gi|2 : CTGTGCTAGCGACAGGTGTTGG-CACAT-AAAA-A-CATC--ACTGTT-ACA-G--CACTGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCTAG-TGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA-----ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCGGTGACTGGATTACT-AATAAC-ATAAGC-AGT-GCATGCTATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATC-A-GAAT-CAAAATCGTTAACGTCTTCAGTTTCA-CCGTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAGTA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-----GGG-CTG-TAAAT-ATTCCGCTATATTCGCTGTAACCTCCGCCC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGGAGTGA--TTAATGCTT-GGATTTGGCTCATC-C-TTACTCAAATACG-CAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--TGGTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGA--CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTTGTCCACGTC-AGC-GCGCAAAA-TCTTA-T-CTCACTTCT-CAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--AGCAC-GTATTTTGCGAAAATCTCCTTTTCGAC-A--TAGCTATTCGCAGAAC-ACGTTGTTAACACTC-C-AAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAG--GTTTGT--CTTC-ATC--GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAAGGAGAACAATTGATAAGAACACCA--AGACAGTGGATTTCCCACAATTAGTC-A--------GT-AACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATAATACCCGCAACTTCTTGAATT
gi|3 : GCTAGTGACAGGCATTGA-CACATTAAAA-A-CCTC--ACTGTT-G-CTG--CCCTTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTTCG-TGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAA-----CAAACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTAGACTGAATTACT-AACTAT-CTGAGT-AGT-GCTTGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATC-A-GAAT-CAATGTCGTTAGCTTCGTCAGTATCA-CCGAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTCCAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCT----GGGG-CTG-TGAAC-ACCCCGCTATATTCATTGTAACCTCCACCC-AGATT--AGTT-TTCACGACA-TCGAAT-TTTAAGG-AGTAA--TTTATGCTT-GGATTTGGCTCATT-C-TGACTCAAATACG-CAT---AGAATGCA-ACA-GGCTCAGGAGAT-ATTCTTG--T-GTGCCGTATTCGTT-TCTCGTCA-GACTCT-GA-GAT-CATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-CTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCA-GATTGTCCACGTC-GGC-GCGCAGAA-TCCTATT-CTCACTTCT-GAGTTCTTTG-ATTTCCCTTTTCTGGC---GGTCAAGAGT--TGCGC-GTA-TTTGC-GAAATCTCCTTTTCGAC-A--TAACTATCCGCAGAAC-ATATTGTTAACAC-A-A-CAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACG------TAAGTGTTTGT--CTGC-ATG--GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATG-ACACTATC-------A-GGAACT-GAACAATTGATAAG
gi|4 : GAAACAAGAACATCAAGAA-----CAAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAGG-GACTGCCCCACT-GATTACAGAAAGT-AGTTGCAGTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TC-GCGAGT-CATAATCGTAA------TTAGT-TCT-CC-AAAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGGTAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT----GGCG-CTGCTAAAA-ATTCCGCTAAATCCGCTGTAACCTCCA-CC-AAATT--TATGATACAC-ACA-TCAAAA-ATTAAGGT-GTCG--GAAGGGCTT-GGATTTGGTGCATT-CGTTACTCATGTAGG-T------GAAGGCAGACA-GGCTCGGGGGGT-GTCCTTGGCT-GTGACGTATCCG
gi|4 : TCGTCAGACTTCTTGA-GAACT-TATTCTGTTGCTT--GATCATTAT-TAGTACT-CTTTC-TTCACTG-T----TTGTTGTCATGTACGACA-TTTCATCA---TTACGTCAT-CGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCGT-GA-GTTTGTCCACATC-AGCCGCGCAGAA-TCCTG-TTCTCGCCTCTTAAGTTCTTTGCATTTCC-TTTCTAGGAAAGGG--GAGAGTTTCGCGC-GTATTT-GT-AAA-TCTCTCTCTCGACAA--TAACTATT-GCAGAAC-ATGTCGTTAACAC-ATC-CAAAAATCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTAT---AGG-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTCAATTAAAATCACGTTAatcattgagtgaaattaggtattatcagtcgtgtcgtcagacttcttgagaacttattctgttgcttgatcattattagtactctttcttcactgtttgttgtcatgtacgacatttcatcattacgtcatcggacgcgattgtcttggcccattctagtctctcaatttccgtcgtgagtttgtccacatcagccgcgcagaatcctgttctcgcctcttaagttctttgcatttcctttctaggaaaggggagagtttcgcgcgtatttgtaaatctctctctcgacaataactattgcagaacatgtcgttaacacatccaaaaatcacaactaagccgaatcattgttgaaagtgtactaacgtttaatttgtccgcgtggaatgacggaaaacacacagaggtcaattcttatcttgcctgcaatgatgcaaagtttgtatagggaacatttgataagaaaaactagattttcaccattcgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|5 : gaaacaagaacatcaagaacaagaacattcagtttaatttccacccggcgaacgtgatgtgcagggactgccccactgattacagaaagtagttgcagttcatagcggaacgaatgttaaacttgtctatgcgcattagagcggcactaccattcgatcccagtcgcgagtcataatcgtaattagttctccaaagtgccacctacaacatcattattaacgaaatatcgcaaaacgggttttccaggtgccctggtaattaacagttccaagtaaacaacgtatacaccggaaagtggcgctgctaaaaattccgctaaatccgctgtaacctccaccaaatttatgatacacacatcaaaaattaaggtgtcggaagggcttggatttggtgcattcgttactcatgtaggtgaaggcagacaggctcggggggtgtccttggctgtgacgtatccgatcattgagtgaaattaggtattatcagtcgtgAGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTCTGA---TGGCCAACT-GACAAC-AGAAGT-AGT-GCATGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC-G--AAT-CATAATCGTAAACGTCGTCAGTATCA-CTGAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAATT-GGTTTGTCCACGGAACC-ACTA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCA-CTGAAATT--TGTT-TTCACGACA-TCGAAAACTTAAGGT-GTAA--TGAATGCTT-GGATTTGGTTCACT-A-TGACTCATGTAGG-CAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTTG--T-GTGTCGTATTCGTT-TCT-GTCAG-ACT-T-GA-GATC-ATATTAAACTTCTG--GTT--TTCTATCGT-CT-CTT-C-TTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTT-TTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGTGT--TGCAC-GTA-TTTGT-AAAATCTCACTCTCGAC-A--TAACTATCCGCAGAACAATATTGTTAACA--A-C-AAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTTA----AA--GTTTG---CTGC-ATG--GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATG-ACACTATC-------AT-GAACT-GAACAATTGATAAGAA---CACCAGACAGTGAATTG-TCACAATTAGAG-A--------GT-AACTAAGATCACG---CTGA-AGACATATATCAAtttttatctttt
gi|6 : caAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTTA----AT--CTTTGT--CCGC-GTG--GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAATCAGTTTGTAT----AG-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAA----------CAACTATG-TCACATTAttatttttaattcttct
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTAT---AGG-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTCAATTAAAATCACGTTAaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : TT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGAC-CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTTGTCCACGTC-tttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAACG-GAACAATTGATAAGAA---Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|9 : tttctcgtcagactctgagatcatattaaatttctggttttgtatcgtctcttcttcaccgtcaatgtttcctcgaatttcgtcaggatgaccaggcgaagtatctacaccatgtctaaggctctcaacctctgcattaagtttgtccacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGAAT--CGCGC-GTATTTC-C-AAAATCTCTCCCTCGAC-A--TAAATATTCGCAGAAC-AGGTTGTTAACAC-A-C-AAAAAA
gi|9 : tCTAAATAGA-TGTATAC-CCCCACATCTTTCTACATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATACTTCATGTACAGCTTGTGACCTGTCAATTTGAATGACAAATTCTCGATAGGGTGTAA
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC
Alignments
lowQualScore : 222 33333333 111 11 333333 1 111 2 11 111 11 1 2222 111 22 11 111 11 111 11 1 1 111 111111 1 111 2222 11 1111 1 2222222222 1 11 11 22222222222222 33333333 11 55555555555555 1 111 11 2222
lowQualScore : 0 1 6 7 000 11111111 99 6 111 6 1 8 1 1 8 444 00 3 0 555555 99 333 8 0 8 0 8 111 22 8 1 5 8 8 8 0 8 0 11 8 8 1 11 0 555 8 1 1 3 6 8 0 0 11 5 5 1 8 6 8 8 6 6 5 99 2222 6 6 77 2 6 777 99 6 8 99 66 11 1 8 5 111 1 11 0 444 8 8 8 11 8 8 7 2 6 6 7 99 99 6 6 6 6 0 6 99 6 111 6 6 999999 77 6 99 4 5 5 1 1 5 1 66 6 5 5 5 5 000 66 66 5 6666 11 5 2 5 5 55 66 0000 5 0 5 5 5 0 8888888888 66 0 66 33 4 00 1 4 1 1 00000000000000 4 1 55555555 44 5 1 7 3 55555555555555 2 3 333 44 3333 0
lowQualScore : . . . . ... ........ .. . ... . . . . . . ... .. . . ...... .. ... . . . . . ... .. . . . . . . . . . .. . . . .. . ... . . . . . . . . .. . . . . . . . . . . .. .... . . .. . . ... .. . . .. .. .. . . . ... . .. . ... . . . .. . . . . . . . .. .. . . . . . . .. . ... . . ...... .. . .. . . . . . . . .. . . . . . ... .. .. . .... .. . . . . .. .. .... . . . . . . .......... .. . .. .. . .. . . . . .............. . . ........ .. . . . . .............. . . ... .. .... .
lowQualScore : 8 7 7 2 888 77777777 22 7 777 7 0 0 4 0 0 666 22 0 2 888888 88 888 0 8 0 6 0 666 00 0 4 0 0 0 0 6 0 4 66 0 0 4 00 8 666 0 0 4 8 0 0 8 8 00 6 0 0 2 0 0 0 7 7 2 22 5555 7 7 77 5 7 555 22 7 0 44 00 00 0 0 6 000 4 00 8 000 0 0 0 00 0 0 7 5 7 7 7 22 22 7 7 7 7 7 7 22 7 777 7 7 888888 77 7 22 3 7 7 4 7 7 4 44 7 7 0 7 7 000 66 99 0 8888 99 0 0 0 0 22 99 6666 0 0 0 0 0 1 8888888888 99 0 99 88 2 88 1 4 7 9 33333333333333 4 0 66666666 99 7 0 5 2 88888888888888 5 3 777 77 0000 7
consensus : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTATTT-GC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
Reference ( family-2485 ) : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACCGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTATTTCGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATGGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTNGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
gi|1 : TAGTGACAGGCATTGGTACATTTAAATATCTC---ACTGCT-A-A-GACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAAAGGT-----------------AAAAAAGAAAAACAA-CAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCGAAG-CTGAATTACTAAACTACCGCA-GTAAGT-GCACGTCATGGAGGAGCTACATGTTACACA-TGTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAA-GAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCACTATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT--GCGGGGCCTG-TGAAA-ATTCCA-TATAATCGTTATAACCTCCA-CC--GATT--TGTT-TTCA-GACAGTCAAGT-TTTAATG-AGAAAACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGC-CACCTAAGAAGG-A-ACAGGGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAACT--TTGTATC-T-CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCT--CGTGACTCAGGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTTG-CCACGTCAAGC-GCGCAGAAGCCCTA-TCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGGTAAAATA--CGCGCGGTATTTC-C-AAAATCTCTCCCTCGACAGTCAAATATTCGCAGAAC-A-GGTGTTAACAC-A-CAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGA--GTTTGT--CAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATGCACCACATC--TTT---TAGAACG-G-ACAAT--GTAAGAA---CACCAGACAGTGGCTTT-CCAATATCAGTCAA--------GTA---AACCAAGAT---GTTACCGA-AGACAG--ATTAAAACTAAATAGAATGTATAGGC-CCCACATCTTTCTACATT
gi|10 : t-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTGTCCTGAC---GGGTAAGAGT--CGCGC-GAATTT-GC-AAAATGTCTCTCTCAACA--TAACTATTCGCAGAAC-ATATTGTTCATAC-A-C-TAGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAG--------------------A--GTTTGTAACCACTGT-----ACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATG-ACACCACT--ATTG---AGAACG-GAAGATTTGATAAGA-----G--AAACGGTAGATTA-TTACgatgaacctgccattttcgtccacagtgctaacggt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCG-CGTTTA-GT----CCACGTC-AGT-GCGCACAA-CCTTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GATAAAGAGT--CGCAC-GTATTT-GT-AAAATCTCTCTATTGACA--TAATTATTCGCAGAAC-ATGTTGCTAACAC-A-C-AAGAAA
gi|12 : CTGTGTTAGCGACAGATATTGGCACGTCAAAA-GCATC---------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTTTG-TGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|13 : cTAATA-ATATCCC-ATTGTT-ATG-G--CCCTGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCTGG-TTATATCTCAGTATGACTGAAAAATTCTCAAa
gi|14 : -GAATA-CATACACGCC-----ACTTCCG-GGTG-CTG-TGAAG-ACCCCAGTATGAGCATCGTA---TCCA-C---GGTTAATGTT-TTCgc
gi|15 : tagaccattgCTGTGCTAGCGACAGACATTGAC-CACTTAAA-AC-TCAATACTGTTAA-A-A--CCCTGAG--CGCC---CC-AAAATTAG
gi|2 : CTGTGCTAGCGACAGGTGTTGGCACAT-AAAA-ACATC---ACTGTT-ACA-G--CACTGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCTAG-TGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA------ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCGGTGACTGGATTACT-AATAACATAA-GC-AGT-GCATGCTATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATC-A-GAAT-CAAAATCGTTAACGTCTTCAGTTTCA-CCGTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAGTA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-----GGG-CTG-TAAAT-ATTCCGCTATATTCGCTGTAACCTCCGCCC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGGAGTGA--TTAATGCTT-GGATTTGGCTCATC-C-TTACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--TGGTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGA--CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTTGTCCACGTC-AGC-GCGCAAAA-TCTTA-TCTCACTTCT-CAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--AGCAC-GTATTTTGCGAAAATCTCCTTTTCGACA--TAGCTATTCGCAGAAC-ACGTTGTTAACACTC-C-AAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAG--GTTTGT--CTTC-ATC--GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAAGGAGAACAATTGATAAGAACACCA--AGACAGTGGATTTCCCACAATT-----A--------GTCAGTAACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATA-ATACCCGCAACTTCTTGAATT
gi|3 : GCTAGTGACAGGCATTGACACATTAAAA-ACCTC---ACTGTT-G-CTG--CCCTTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTTCG-TGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAA------CAAACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTAGACTGAATTACT-AACTATCTGA-GT-AGT-GCTTGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATC-A-GAAT-CAATGTCGTTAGCTTCGTCAGTATCA-CCGAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTCCAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCT--G-GGG--CTG-TGAAC-ACCCCGCTATATTCATTGTAACCTCCA-CCCAGATT--AGTT-TTCACGACA-TCGAAT-TTTAAGG-AGTAA--TTTATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAATGCA-ACA-GGCTCAGGAGAT-ATTCTTG--T-GTGCCGTATTCGTT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-CTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCA-GATTGTCCACGTC-GGC-GCGCAGAA-TCCTATTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTTCTGGC---GGTCAAGAGT--TGCGC-GTATTT-GC-GAAATCTCCTTTTCGACA--TAACTATCCGCAGAAC-ATATTGTTAACAC-A-A-CAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACG------TAAGTGTTTGT--CTGC-ATG--GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATG-ACACTATC-------A-GGAACT-GAACAATTGATAAG
gi|4 : GAAACAAGAAC-ATCAAGAA-----CAAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAGG-GACTGCCCCACT-GATTACAGAAAGT-AGTTGCAGTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TC-GCGAGT-CATAATCGTAA------TTAGT-TCT-CC-AAAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGGTAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT----GGCG-CTGCTAAAA-ATTCCGCTAAATCCGCTGTAACCTCCA-CC-AAATT--TATGATACAC-ACA-TCAAAA-ATTAAGGT-GTCG--GAAGGGCTT-GGATTTGGTGCATT-CGTTACTCATG--TAGGT------GAAGGCAGACA-GGCTCGGGGGGT-GTCCTTGGCT-GTGACGTATCCG
gi|4 : TCGTCAGACTTCTTGA-GAACT-TATTCTGTTGCTT--GATCATTAT-TAGTACT-CTTTC-TTCACTG-T----TTGTTGTCATGTACGACA-TTTCATCA---TTACGTCAT-CGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCGT-GA-GTTTGTCCACATC-AGCCGCGCAGAA-TCCTGTTCTCGCCTCTTAAGTTCTTTGCATTTCC-TTTCTAGGAAAGGG--GAGAGTTTCGCGC-GTATTT-GT-AAA-TCTCTCTCTCGACAA-TAACTATT-GCAGAAC-ATGTCGTTAACAC-ATC-CAAAAATCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAatcattgagtgaaattaggtattatcagtcgtgtcgtcagacttcttgagaacttattctgttgcttgatcattattagtactctttcttcactgtttgttgtcatgtacgacatttcatcattacgtcatcggacgcgattgtcttggcccattctagtctctcaatttccgtcgtgagtttgtccacatcagccgcgcagaatcctgttctcgcctcttaagttctttgcatttcctttctaggaaaggggagagtttcgcgcgtatttgtaaatctctctctcgacaataactattgcagaacatgtcgttaacacatccaaaaatcacaactaagccgaatcattgttgaaagtgtactaacgtttaatttgtccgcgtggaatgacggaaaacacacagaggtcaattcttatcttgcctgcaatgatgcaaagtttgtatagggaacatttgataagaaaaactagattttcaccattcgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|5 : gaaacaagaacatcaagaacaagaacattcagtttaatttccacccggcgaacgtgatgtgcagggactgccccactgattacagaaagtagttgcagttcatagcggaacgaatgttaaacttgtctatgcgcattagagcggcactaccattcgatcccagtcgcgagtcataatcgtaattagttctccaaagtgccacctacaacatcattattaacgaaatatcgcaaaacgggttttccaggtgccctggtaattaacagttccaagtaaacaacgtatacaccggaaagtggcgctgctaaaaattccgctaaatccgctgtaacctccaccaaatttatgatacacacatcaaaaattaaggtgtcggaagggcttggatttggtgcattcgttactcatgtaggtgaaggcagacaggctcggggggtgtccttggctgtgacgtatccgatcattgagtgaaattaggtattatcagtcgtgAGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTCTGA---TGGCCAACT-GACAACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC-G--AAT-CATAATCGTAAACGTCGTCAGTATCA-CTGAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAATT-GGTTTGTCCACGGAACC-ACTA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCA-CTGAAATT--TGTT-TTCACGACA-TCGAAAACTTAAGGT-GTAA--TGAATGCTT-GGATTTGGTTCACT-A-TGACTCATG--TAGGCAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTTG--T-GTGTCGTATTCGTT-TCT-GTCAG-ACT-T-GA-GATC-ATATTAAACTTCTG--GTT--TTCTATCGT-CT-CTT-C-TTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTTTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGTGT--TGCAC-GTATTT-GT-AAAATCTCACTCTCGACA--TAACTATCCGCAGAACAATATTGTTAACA--A-C-AAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTTA----AA--GTTTG---CTGC-ATG--GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATG-ACACTATC-------AT-GAACT-GAACAATTGATAAGAA---CACCAGACAGTGAATTG-TCACAATTAGAG-A--------GT----AACTAAGATCACG---CTGA-AGACATATATCAAtttttatctttt
gi|6 : caAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTTA----AT--CTTTGT--CCGC-GTG--GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAATCAGTTTGTATA----G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAA----------C---AACTATG-TCACATTAttatttttaattcttct
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : TT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGAC-CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTTGTCCACGTC-tttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAACG-GAACAATTGATAAGAA---Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|9 : tttctcgtcagactctgagatcatattaaatttctggttttgtatcgtctcttcttcaccgtcaatgtttcctcgaatttcgtcaggatgaccaggcgaagtatctacaccatgtctaaggctctcaacctctgcattaagtttgtccacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGAAT--CGCGC-GTATTTC-C-AAAATCTCTCCCTCGACA--TAAATATTCGCAGAAC-AGGTTGTTAACAC-A-C-AAAAAA
gi|9 : tCTAAATAGA-TGTATA-CC-CCCACATCTTTCTACATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATACTTCATGTACAGCTTGTGACCTGTCAATTTGAATGACAAATTCTCGATAGGGTGTAA
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC
Alignments
lowQualScore : 222 33333333 111 11 333333 1 111 2 11 111 11 1 2222 111 22 11 111 11 111 11 1 1 111 111111 1 111 11 1111 1 2222222222 1 11 11 2222222 33333333 11 55555555555555 1 111 11 2222
lowQualScore : 0 1 6 7 000 11111111 99 6 111 6 1 8 1 1 8 444 00 3 0 555555 99 333 8 0 8 0 8 111 22 8 1 0 8 8 8 0 8 0 11 8 8 1 11 0 555 8 1 1 3 6 8 0 0 11 5 5 1 8 6 8 8 6 6 5 99 2222 6 6 77 2 6 777 99 6 8 99 66 11 1 8 5 111 1 11 0 444 8 8 8 11 8 8 7 2 6 6 7 99 99 6 6 6 6 0 6 99 6 111 6 6 999999 77 6 99 4 5 5 1 1 5 1 66 6 5 5 5 5 000 66 66 5 5 5 11 5 2 5 5 55 66 0000 5 0 5 5 5 0 8888888888 66 0 66 33 4 00 1 4 1 1 0000000 1 444 4 1 55555555 44 5 1 6 3 55555555555555 2 3 333 44 3333 0
lowQualScore : . . . . ... ........ .. . ... . . . . . . ... .. . . ...... .. ... . . . . . ... .. . . . . . . . . . .. . . . .. . ... . . . . . . . . .. . . . . . . . . . . .. .... . . .. . . ... .. . . .. .. .. . . . ... . .. . ... . . . .. . . . . . . . .. .. . . . . . . .. . ... . . ...... .. . .. . . . . . . . .. . . . . . ... .. .. . . . .. . . . . .. .. .... . . . . . . .......... .. . .. .. . .. . . . . ....... . ... . . ........ .. . . . . .............. . . ... .. .... .
lowQualScore : 8 7 7 2 888 77777777 22 7 777 7 0 0 4 0 0 666 22 0 2 888888 88 888 0 8 0 6 0 666 00 0 4 6 0 0 0 6 0 4 66 0 0 4 00 8 666 0 0 4 8 0 0 8 8 00 6 0 0 2 0 0 0 7 7 2 22 5555 7 7 77 5 7 555 22 7 0 44 00 00 0 0 6 000 4 00 8 000 0 0 0 00 0 0 7 5 7 7 7 22 22 7 7 7 7 7 7 22 7 777 7 7 888888 77 7 22 3 7 7 4 7 7 4 44 7 7 0 7 7 000 66 99 0 0 0 99 0 0 0 0 22 99 6666 0 0 0 0 0 1 8888888888 99 0 99 88 2 88 1 4 7 9 2222222 4 777 4 0 66666666 99 7 0 7 2 88888888888888 5 3 777 77 0000 7
consensus : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
Reference ( family-2485 ) : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
gi|1 : TAGTGACAGGCATTGGTACATTTAAATATCTC---ACTGCT-A-A-GACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAAAGGT-----------------AAAAAAGAAAAACAA-CAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCGAAG-CTGAATTACTAAACTACCGCA-GTAAGT-GCACGTCATGGAGGAGCTACATGTTACACA-TGTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAA-GAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCACTATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT--GCGGGGCCTG-TGAAA-ATTCCA-TATAATCGTTATAACCTCCA-CC--GATT--TGTT-TTCA-GACAGTCAAGT-TTTAATG-AGAAAACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGC-CACCTAAGAAGG-A-ACAGGGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAACT--TTGTATC-T-CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCT--CGTGACTCAGGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTTG-CCACGTCAAGC-GCGCAGAAGCCCTA-TCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGGTAAAATA--CGCGCGGTA-TTTCC-AAAATCTCTCCCTCGACAGTCAAATATTCGCAGAAC-A-GGTGTTAACAC-A-CAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGA--GTTTGT--CAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATGCACCACATC--TTT---TAGAACG-G-ACAAT--GTAAGAA---CACCAGACAGTGGCTTT-CCAATATCAGTCAA--------GTA---AACCAAGAT---GTTACCGA-AGACAG--ATTAAAACTAAATAGAATGTATAGGC-CCCACATCTTTCTACATT
gi|10 : t-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTGTCCTGAC---GGGTAAGAGT--CGCGC-GAA-TTTGC-AAAATGTCTCTCTCAACA--TAACTATTCGCAGAAC-ATATTGTTCATAC-A-C-TAGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAG--------------------A--GTTTGTAACCACTGT-----ACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATG-ACACCACT--ATTG---AGAACG-GAAGATTTGATAAGA-----G--AAACGGTAGATTA-TTACgatgaacctgccattttcgtccacagtgctaacggt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCG-CGTTTA-GT----CCACGTC-AGT-GCGCACAA-CCTTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GATAAAGAGT--CGCAC-GTA-TTTGT-AAAATCTCTCTATTGACA--TAATTATTCGCAGAAC-ATGTTGCTAACAC-A-C-AAGAAA
gi|12 : CTGTGTTAGCGACAGATATTGGCACGTCAAAA-GCATC---------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTTTG-TGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|13 : cTAATA-ATATCCC-ATTGTT-ATG-G--CCCTGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCTGG-TTATATCTCAGTATGACTGAAAAATTCTCAAa
gi|14 : -GAATA-CATACACGCC-----ACTTCCG-GGTG-CTG-TGAAG-ACCCCAGTATGAGCATCGTA---TCCA-C---GGTTAATGTT-TTCgc
gi|15 : tagaccattgCTGTGCTAGCGACAGACATTGAC-CACTTAAA-AC-TCAATACTGTTAA-A-A--CCCTGAG--CGCC---CC-AAAATTAG
gi|2 : CTGTGCTAGCGACAGGTGTTGGCACAT-AAAA-ACATC---ACTGTT-ACA-G--CACTGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCTAG-TGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA------ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCGGTGACTGGATTACT-AATAACATAA-GC-AGT-GCATGCTATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATC-A-GAAT-CAAAATCGTTAACGTCTTCAGTTTCA-CCGTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAGTA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-----GGG-CTG-TAAAT-ATTCCGCTATATTCGCTGTAACCTCCGCCC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGGAGTGA--TTAATGCTT-GGATTTGGCTCATC-C-TTACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--TGGTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGA--CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTTGTCCACGTC-AGC-GCGCAAAA-TCTTA-TCTCACTTCT-CAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--AGCAC-GTATTTTGCGAAAATCTCCTTTTCGACA--TAGCTATTCGCAGAAC-ACGTTGTTAACACTC-C-AAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAG--GTTTGT--CTTC-ATC--GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAAGGAGAACAATTGATAAGAACACCA--AGACAGTGGATTTCCCACAATT-----A--------GTCAGTAACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATA-ATACCCGCAACTTCTTGAATT
gi|3 : GCTAGTGACAGGCATTGACACATTAAAA-ACCTC---ACTGTT-G-CTG--CCCTTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTTCG-TGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAA------CAAACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTAGACTGAATTACT-AACTATCTGA-GT-AGT-GCTTGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATC-A-GAAT-CAATGTCGTTAGCTTCGTCAGTATCA-CCGAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTCCAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCT--G-GGG--CTG-TGAAC-ACCCCGCTATATTCATTGTAACCTCCA-CCCAGATT--AGTT-TTCACGACA-TCGAAT-TTTAAGG-AGTAA--TTTATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAATGCA-ACA-GGCTCAGGAGAT-ATTCTTG--T-GTGCCGTATTCGTT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-CTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCA-GATTGTCCACGTC-GGC-GCGCAGAA-TCCTATTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTTCTGGC---GGTCAAGAGT--TGCGC-GTA-TTTGC-GAAATCTCCTTTTCGACA--TAACTATCCGCAGAAC-ATATTGTTAACAC-A-A-CAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACG------TAAGTGTTTGT--CTGC-ATG--GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATG-ACACTATC-------A-GGAACT-GAACAATTGATAAG
gi|4 : GAAACAAGAAC-ATCAAGAA-----CAAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAGG-GACTGCCCCACT-GATTACAGAAAGT-AGTTGCAGTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TC-GCGAGT-CATAATCGTAA------TTAGT-TCT-CC-AAAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGGTAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT----GGCG-CTGCTAAAA-ATTCCGCTAAATCCGCTGTAACCTCCA-CC-AAATT--TATGATACAC-ACA-TCAAAA-ATTAAGGT-GTCG--GAAGGGCTT-GGATTTGGTGCATT-CGTTACTCATG--TAGGT------GAAGGCAGACA-GGCTCGGGGGGT-GTCCTTGGCT-GTGACGTATCCG
gi|4 : TCGTCAGACTTCTTGA-GAACT-TATTCTGTTGCTT--GATCATTAT-TAGTACT-CTTTC-TTCACTG-T----TTGTTGTCATGTACGACA-TTTCATCA---TTACGTCAT-CGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCGT-GA-GTTTGTCCACATC-AGCCGCGCAGAA-TCCTGTTCTCGCCTCTTAAGTTCTTTGCATTTCC-TTTCTAGGAAAGGG--GAGAGTTTCGCGC-GTA-TTTGT-AAA-TCTCTCTCTCGACAA-TAACTATT-GCAGAAC-ATGTCGTTAACAC-ATC-CAAAAATCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAatcattgagtgaaattaggtattatcagtcgtgtcgtcagacttcttgagaacttattctgttgcttgatcattattagtactctttcttcactgtttgttgtcatgtacgacatttcatcattacgtcatcggacgcgattgtcttggcccattctagtctctcaatttccgtcgtgagtttgtccacatcagccgcgcagaatcctgttctcgcctcttaagttctttgcatttcctttctaggaaaggggagagtttcgcgcgtatttgtaaatctctctctcgacaataactattgcagaacatgtcgttaacacatccaaaaatcacaactaagccgaatcattgttgaaagtgtactaacgtttaatttgtccgcgtggaatgacggaaaacacacagaggtcaattcttatcttgcctgcaatgatgcaaagtttgtatagggaacatttgataagaaaaactagattttcaccattcgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|5 : gaaacaagaacatcaagaacaagaacattcagtttaatttccacccggcgaacgtgatgtgcagggactgccccactgattacagaaagtagttgcagttcatagcggaacgaatgttaaacttgtctatgcgcattagagcggcactaccattcgatcccagtcgcgagtcataatcgtaattagttctccaaagtgccacctacaacatcattattaacgaaatatcgcaaaacgggttttccaggtgccctggtaattaacagttccaagtaaacaacgtatacaccggaaagtggcgctgctaaaaattccgctaaatccgctgtaacctccaccaaatttatgatacacacatcaaaaattaaggtgtcggaagggcttggatttggtgcattcgttactcatgtaggtgaaggcagacaggctcggggggtgtccttggctgtgacgtatccgatcattgagtgaaattaggtattatcagtcgtgAGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTCTGA---TGGCCAACT-GACAACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC-G--AAT-CATAATCGTAAACGTCGTCAGTATCA-CTGAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAATT-GGTTTGTCCACGGAACC-ACTA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCA-CTGAAATT--TGTT-TTCACGACA-TCGAAAACTTAAGGT-GTAA--TGAATGCTT-GGATTTGGTTCACT-A-TGACTCATG--TAGGCAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTTG--T-GTGTCGTATTCGTT-TCT-GTCAG-ACT-T-GA-GATC-ATATTAAACTTCTG--GTT--TTCTATCGT-CT-CTT-C-TTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTTTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGTGT--TGCAC-GTA-TTTGT-AAAATCTCACTCTCGACA--TAACTATCCGCAGAACAATATTGTTAACA--A-C-AAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTTA----AA--GTTTG---CTGC-ATG--GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATG-ACACTATC-------AT-GAACT-GAACAATTGATAAGAA---CACCAGACAGTGAATTG-TCACAATTAGAG-A--------GT----AACTAAGATCACG---CTGA-AGACATATATCAAtttttatctttt
gi|6 : caAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTTA----AT--CTTTGT--CCGC-GTG--GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAATCAGTTTGTATA----G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAA----------C---AACTATG-TCACATTAttatttttaattcttct
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : TT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGAC-CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTTGTCCACGTC-tttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAACG-GAACAATTGATAAGAA---Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|9 : tttctcgtcagactctgagatcatattaaatttctggttttgtatcgtctcttcttcaccgtcaatgtttcctcgaatttcgtcaggatgaccaggcgaagtatctacaccatgtctaaggctctcaacctctgcattaagtttgtccacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGAAT--CGCGC-GTA-TTTCC-AAAATCTCTCCCTCGACA--TAAATATTCGCAGAAC-AGGTTGTTAACAC-A-C-AAAAAA
gi|9 : tCTAAATAGA-TGTATA-CC-CCCACATCTTTCTACATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATACTTCATGTACAGCTTGTGACCTGTCAATTTGAATGACAAATTCTCGATAGGGTGTAA
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC
Alignments
lowQualScore : 222 33333333 111 11 333333 1 111 2 11 111 11 1 2222 111 22 11 111 11 111 11 1 1 111 111111 1 111 11 1111 1 2222222222 1 11 11 2222222 33333333 11 55555555555555 1 111 11 2222
lowQualScore : 0 1 6 7 000 11111111 99 6 111 6 1 8 1 1 8 444 00 3 0 555555 99 333 8 0 8 0 8 111 22 8 1 0 8 8 8 0 8 0 11 8 8 1 11 0 555 8 1 1 3 6 8 0 0 11 5 5 1 8 6 8 8 6 6 5 99 2222 6 6 77 2 6 777 99 6 8 99 66 11 1 8 5 111 1 11 0 444 8 8 8 11 8 8 7 2 6 6 7 99 99 6 6 6 6 0 6 99 6 111 6 6 999999 77 6 99 4 5 5 1 1 5 1 66 6 5 5 5 5 000 66 66 5 5 5 11 5 2 5 5 55 66 0000 5 0 5 5 5 0 8888888888 66 0 66 33 4 00 1 4 1 1 0000000 1 444 4 1 55555555 44 5 1 6 3 55555555555555 2 3 333 44 3333 0
lowQualScore : . . . . ... ........ .. . ... . . . . . . ... .. . . ...... .. ... . . . . . ... .. . . . . . . . . . .. . . . .. . ... . . . . . . . . .. . . . . . . . . . . .. .... . . .. . . ... .. . . .. .. .. . . . ... . .. . ... . . . .. . . . . . . . .. .. . . . . . . .. . ... . . ...... .. . .. . . . . . . . .. . . . . . ... .. .. . . . .. . . . . .. .. .... . . . . . . .......... .. . .. .. . .. . . . . ....... . ... . . ........ .. . . . . .............. . . ... .. .... .
lowQualScore : 8 7 7 2 888 77777777 22 7 777 7 0 0 4 0 0 666 22 0 2 888888 88 888 0 8 0 6 0 666 00 0 4 6 0 0 0 6 0 4 66 0 0 4 00 8 666 0 0 4 8 0 0 8 8 00 6 0 0 2 0 0 0 7 7 2 22 5555 7 7 77 5 7 555 22 7 0 44 00 00 0 0 6 000 4 00 8 000 0 0 0 00 0 0 7 5 7 7 7 22 22 7 7 7 7 7 7 22 7 777 7 7 888888 77 7 22 3 7 7 4 7 7 4 44 7 7 0 7 7 000 66 99 0 0 0 99 0 0 0 0 22 99 6666 0 0 0 0 0 1 8888888888 99 0 99 88 2 88 1 4 7 9 2222222 4 777 4 0 66666666 99 7 0 7 2 88888888888888 5 3 777 77 0000 7
consensus : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
Reference ( family-2485 ) : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
gi|1 : TAGTGACAGGCATTGGTACATTTAAATATCTC---ACTGCT-A-A-GACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAAAGGT-----------------AAAAAAGAAAAACAA-CAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCGAAG-CTGAATTACTAAACTACCGCA-GTAAGT-GCACGTCATGGAGGAGCTACATGTTACACA-TGTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAA-GAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCACTATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT--GCGGGGCCTG-TGAAA-ATTCCA-TATAATCGTTATAACCTCCA-CC--GATT--TGTT-TTCA-GACAGTCAAGT-TTTAATG-AGAAAACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGC-CACCTAAGAAGG-A-ACAGGGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAACT--TTGTATC-T-CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCT--CGTGACTCAGGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTTG-CCACGTCAAGC-GCGCAGAAGCCCTA-TCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGGTAAAATA--CGCGCGGTA-TTTCC-AAAATCTCTCCCTCGACAGTCAAATATTCGCAGAAC-A-GGTGTTAACAC-A-CAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGA--GTTTGT--CAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATGCACCACATC--TTT---TAGAACG-G-ACAAT--GTAAGAA---CACCAGACAGTGGCTTT-CCAATATCAGTCAA--------GTA---AACCAAGAT---GTTACCGA-AGACAG--ATTAAAACTAAATAGAATGTATAGGC-CCCACATCTTTCTACATT
gi|10 : t-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTGTCCTGAC---GGGTAAGAGT--CGCGC-GAA-TTTGC-AAAATGTCTCTCTCAACA--TAACTATTCGCAGAAC-ATATTGTTCATAC-A-C-TAGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAG--------------------A--GTTTGTAACCACTGT-----ACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATG-ACACCACT--ATTG---AGAACG-GAAGATTTGATAAGA-----G--AAACGGTAGATTA-TTACgatgaacctgccattttcgtccacagtgctaacggt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCG-CGTTTA-GT----CCACGTC-AGT-GCGCACAA-CCTTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GATAAAGAGT--CGCAC-GTA-TTTGT-AAAATCTCTCTATTGACA--TAATTATTCGCAGAAC-ATGTTGCTAACAC-A-C-AAGAAA
gi|12 : CTGTGTTAGCGACAGATATTGGCACGTCAAAA-GCATC---------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTTTG-TGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|13 : cTAATA-ATATCCC-ATTGTT-ATG-G--CCCTGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCTGG-TTATATCTCAGTATGACTGAAAAATTCTCAAa
gi|14 : -GAATA-CATACACGCC-----ACTTCCG-GGTG-CTG-TGAAG-ACCCCAGTATGAGCATCGTA---TCCA-C---GGTTAATGTT-TTCgc
gi|15 : tagaccattgCTGTGCTAGCGACAGACATTGAC-CACTTAAA-AC-TCAATACTGTTAA-A-A--CCCTGAG--CGCC---CC-AAAATTAG
gi|2 : CTGTGCTAGCGACAGGTGTTGGCACAT-AAAA-ACATC---ACTGTT-ACA-G--CACTGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCTAG-TGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA------ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCGGTGACTGGATTACT-AATAACATAA-GC-AGT-GCATGCTATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATC-A-GAAT-CAAAATCGTTAACGTCTTCAGTTTCA-CCGTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAGTA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-----GGG-CTG-TAAAT-ATTCCGCTATATTCGCTGTAACCTCCGCCC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGGAGTGA--TTAATGCTT-GGATTTGGCTCATC-C-TTACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--TGGTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGA--CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTTGTCCACGTC-AGC-GCGCAAAA-TCTTA-TCTCACTTCT-CAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--AGCAC-GTATTTTGCGAAAATCTCCTTTTCGACA--TAGCTATTCGCAGAAC-ACGTTGTTAACACTC-C-AAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAG--GTTTGT--CTTC-ATC--GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAAGGAGAACAATTGATAAGAACACCA--AGACAGTGGATTTCCCACAATT-----A--------GTCAGTAACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATA-ATACCCGCAACTTCTTGAATT
gi|3 : GCTAGTGACAGGCATTGACACATTAAAA-ACCTC---ACTGTT-G-CTG--CCCTTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTTCG-TGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAA------CAAACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTAGACTGAATTACT-AACTATCTGA-GT-AGT-GCTTGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATC-A-GAAT-CAATGTCGTTAGCTTCGTCAGTATCA-CCGAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTCCAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCT--G-GGG--CTG-TGAAC-ACCCCGCTATATTCATTGTAACCTCCA-CCCAGATT--AGTT-TTCACGACA-TCGAAT-TTTAAGG-AGTAA--TTTATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAATGCA-ACA-GGCTCAGGAGAT-ATTCTTG--T-GTGCCGTATTCGTT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-CTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCA-GATTGTCCACGTC-GGC-GCGCAGAA-TCCTATTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTTCTGGC---GGTCAAGAGT--TGCGC-GTA-TTTGC-GAAATCTCCTTTTCGACA--TAACTATCCGCAGAAC-ATATTGTTAACAC-A-A-CAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACG------TAAGTGTTTGT--CTGC-ATG--GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATG-ACACTATC-------A-GGAACT-GAACAATTGATAAG
gi|4 : GAAACAAGAAC-ATCAAGAA-----CAAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAGG-GACTGCCCCACT-GATTACAGAAAGT-AGTTGCAGTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TC-GCGAGT-CATAATCGTAA------TTAGT-TCT-CC-AAAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGGTAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT----GGCG-CTGCTAAAA-ATTCCGCTAAATCCGCTGTAACCTCCA-CC-AAATT--TATGATACAC-ACA-TCAAAA-ATTAAGGT-GTCG--GAAGGGCTT-GGATTTGGTGCATT-CGTTACTCATG--TAGGT------GAAGGCAGACA-GGCTCGGGGGGT-GTCCTTGGCT-GTGACGTATCCG
gi|4 : TCGTCAGACTTCTTGA-GAACT-TATTCTGTTGCTT--GATCATTAT-TAGTACT-CTTTC-TTCACTG-T----TTGTTGTCATGTACGACA-TTTCATCA---TTACGTCAT-CGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCGT-GA-GTTTGTCCACATC-AGCCGCGCAGAA-TCCTGTTCTCGCCTCTTAAGTTCTTTGCATTTCC-TTTCTAGGAAAGGG--GAGAGTTTCGCGC-GTA-TTTGT-AAA-TCTCTCTCTCGACAA-TAACTATT-GCAGAAC-ATGTCGTTAACAC-ATC-CAAAAATCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAatcattgagtgaaattaggtattatcagtcgtgtcgtcagacttcttgagaacttattctgttgcttgatcattattagtactctttcttcactgtttgttgtcatgtacgacatttcatcattacgtcatcggacgcgattgtcttggcccattctagtctctcaatttccgtcgtgagtttgtccacatcagccgcgcagaatcctgttctcgcctcttaagttctttgcatttcctttctaggaaaggggagagtttcgcgcgtatttgtaaatctctctctcgacaataactattgcagaacatgtcgttaacacatccaaaaatcacaactaagccgaatcattgttgaaagtgtactaacgtttaatttgtccgcgtggaatgacggaaaacacacagaggtcaattcttatcttgcctgcaatgatgcaaagtttgtatagggaacatttgataagaaaaactagattttcaccattcgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|5 : gaaacaagaacatcaagaacaagaacattcagtttaatttccacccggcgaacgtgatgtgcagggactgccccactgattacagaaagtagttgcagttcatagcggaacgaatgttaaacttgtctatgcgcattagagcggcactaccattcgatcccagtcgcgagtcataatcgtaattagttctccaaagtgccacctacaacatcattattaacgaaatatcgcaaaacgggttttccaggtgccctggtaattaacagttccaagtaaacaacgtatacaccggaaagtggcgctgctaaaaattccgctaaatccgctgtaacctccaccaaatttatgatacacacatcaaaaattaaggtgtcggaagggcttggatttggtgcattcgttactcatgtaggtgaaggcagacaggctcggggggtgtccttggctgtgacgtatccgatcattgagtgaaattaggtattatcagtcgtgAGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTCTGA---TGGCCAACT-GACAACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC-G--AAT-CATAATCGTAAACGTCGTCAGTATCA-CTGAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAATT-GGTTTGTCCACGGAACC-ACTA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCA-CTGAAATT--TGTT-TTCACGACA-TCGAAAACTTAAGGT-GTAA--TGAATGCTT-GGATTTGGTTCACT-A-TGACTCATG--TAGGCAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTTG--T-GTGTCGTATTCGTT-TCT-GTCAG-ACT-T-GA-GATC-ATATTAAACTTCTG--GTT--TTCTATCGT-CT-CTT-C-TTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTTTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGTGT--TGCAC-GTA-TTTGT-AAAATCTCACTCTCGACA--TAACTATCCGCAGAACAATATTGTTAACA--A-C-AAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTTA----AA--GTTTG---CTGC-ATG--GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATG-ACACTATC-------AT-GAACT-GAACAATTGATAAGAA---CACCAGACAGTGAATTG-TCACAATTAGAG-A--------GT----AACTAAGATCACG---CTGA-AGACATATATCAAtttttatctttt
gi|6 : caAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTTA----AT--CTTTGT--CCGC-GTG--GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAATCAGTTTGTATA----G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAA----------C---AACTATG-TCACATTAttatttttaattcttct
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA---TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A--AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : TT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGAC-CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTTGTCCACGTC-tttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAACG-GAACAATTGATAAGAA---Cnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|9 : tttctcgtcagactctgagatcatattaaatttctggttttgtatcgtctcttcttcaccgtcaatgtttcctcgaatttcgtcaggatgaccaggcgaagtatctacaccatgtctaaggctctcaacctctgcattaagtttgtccacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGAAT--CGCGC-GTA-TTTCC-AAAATCTCTCCCTCGACA--TAAATATTCGCAGAAC-AGGTTGTTAACAC-A-C-AAAAAA
gi|9 : tCTAAATAGA-TGTATA-CC-CCCACATCTTTCTACATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
blockSeqs : C . A AAT ATGG . C CAT . C . T T . TTG TG T AACAT TC TTT T A A . TGA GA . A A . T . T AT T G T TC GC . A T A T . GC T G C C A T . . A G . CCG . C AC G C CCA AA A . AA GA . T . T CG A . . G . T GC G . G C T . C . CA A . T . . . G GTA C . TTA C C TG T . C C T G T A C . T T C AAG GT TT . T G A A T T T T GT AGAT A T . A . AGACTAGG AA T . GA G TC A . A C AGTTTGT A AAC A T ACACCA GG C A C A CAACTACTGTC A G ATA A ATA
blockSeqs : T . A CC AAAA . . . . T . C G . TCT G T GA AC TTT . . A . AGA AA . T . . . . . AT . . T . A . A T G A . . T C T A . . . . . A . G . . G C . TGA . . . T A . T . T C A . . . . . . . . A C . . T . . . . . . . . . . . . G T . . G . . T A . T A . . T . . . TA . . . . . . T . . A . . . A . . . TAAGTG . . . GA T TT A . A C TTTGT G AAG . A ACACC AG . C A A CAACTACTGTC C . AT A CC
blockSeqs : T . A . ACAG . . . . C . G A . TCT A G . GA . . . A . GA CC . T . . . . . AT . . C . A . T A A A . . G G C T . . . . . G . G . . T C . CA . . . T T . A . G C T . . . . . . . . . C . . . . . . . . . . . . . . . T C . . G . . . C . T G . . T . . . TC . . . . . . C . . A . . . . . . . AAAG . . . . T TT C . A T TTTGT G AAC . A G AG . A C A GTCAGT C
blockSeqs : T . C . GCTG . . . . C . C C . TAT . . . . A GC . A . . . . . T . . A . G . T A . . . . . . A . . . . . . G . . . . C C . CA . . . A T . G . T A T . . . . . . . . . C . . . . . . . . . . . . . . . T C . . G . . . G . T A . . T . . . TC . . . . . . T . . C . . . . . . . AATC . . . . C TT C . G A ATTG A AAC . T A . . C C . GT C
blockSeqs : . . . . . . . . . . . . . . . . . A C . . . . . . . . . . . . . . . . . . . . . G . . . G . . . G . T G . . T . . . TC . . . . . . T . . C . . . . . . . TAA . . . . T AC C . A T TTTT A AAC . A A . . C . . C C
blockSeqs : . . . . A . . . . . . . . . . . . . . T . . A . . . . . . . TAA . . . . A A C . G A TTTT A . . T A . .
blockSeqs : . . . . . . G . . A . . . . . . . AG . . . . C A C . G A . G . . T
blockSeqs : A . A C . . . . A
blockSeqCons : ACGG**** ** TCT GA* AT A** ** G*** CA* ** C** ** *** ** ** N***** C* A* ** A* NAAG****** ** TTTGT** A******* GTC***********
originalCons : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTT-A-A-G--CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGAGACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-G-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GGC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTA---TAA--GTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGAA---CA--AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
finalCons : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTTACGG----CCCTGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCGGGA-CTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATCA--GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTTG---GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CCA-GATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATTC--TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCAN-----CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTCA-GC-GCGCAGAA-CCCTGTTCTCACTTCT-GAGTTCTTTG-ATTTCCCTTTCCTGGC---GGTCAAGAGT--CGCGC-GTA-TTTGC-AAAATCTCTCTCTCGACA--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-CA-AAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTTNAAG------TTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATCTTTGT--ATAGAACG-GAACANTTGATAAGAA-------AGACAGTGGATTT-TCACCATTCGAGAAGTC-----------AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATACTTCATGTACAGCTTGTGACCTGTCAATTTGAATGACAAATTCTCGATAGGGTGTAA
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC
Alignments
lowQualScore : 222 111 11 333333 1 11111 2 11 111 11 1 2222 111 22 11 111 11 111 11 1 1 111 222222 1 111 1111 1 22222222 1 11 11 2222222 2222222222 11 55555555555555 1 111 11 2222
lowQualScore : 0 1 6 7 000 88 6 99 6 111 6 1 8 1 1 8 444 00 3 0 555555 99 333 8 0 8 0 8 22222 22 8 1 0 8 8 8 0 8 0 11 8 8 1 11 0 999 8 1 1 3 6 8 0 0 11 5 5 1 8 6 8 8 6 6 5 99 2222 6 6 77 2 6 777 99 6 8 99 66 11 1 8 5 111 1 11 0 444 8 8 8 11 8 8 7 2 6 6 7 99 99 6 6 6 6 0 6 99 6 111 6 6 111111 77 6 99 4 5 5 1 1 5 1 5 6 5 5 5 5 000 66 66 5 5 5 5 66 5 2 5 5 55 66 0000 5 0 5 5 5 11111111 66 0 66 33 4 00 1 4 1 1 0000000 1 444 4 1 6666666666 44 5 1 6 3 55555555555555 2 3 333 44 3333 0
lowQualScore : . . . . ... .. . .. . ... . . . . . . ... .. . . ...... .. ... . . . . . ..... .. . . . . . . . . . .. . . . .. . ... . . . . . . . . .. . . . . . . . . . . .. .... . . .. . . ... .. . . .. .. .. . . . ... . .. . ... . . . .. . . . . . . . .. .. . . . . . . .. . ... . . ...... .. . .. . . . . . . . . . . . . . ... .. .. . . . . .. . . . . .. .. .... . . . . . ........ .. . .. .. . .. . . . . ....... . ... . . .......... .. . . . . .............. . . ... .. .... .
lowQualScore : 8 7 7 2 888 88 7 22 7 777 7 0 0 4 0 0 666 22 0 2 888888 88 888 0 8 0 6 0 66666 00 0 4 6 0 0 0 6 0 4 66 0 0 4 00 8 888 0 0 4 8 0 0 8 8 00 6 0 0 2 0 0 0 7 7 2 22 5555 7 7 77 5 7 555 22 7 0 44 00 00 0 0 6 000 4 00 8 000 0 0 0 00 0 0 7 5 7 7 7 22 22 7 7 7 7 7 7 22 7 777 7 7 888888 77 7 22 3 7 7 4 7 7 4 7 7 7 0 7 7 000 66 99 0 0 0 0 99 0 0 0 0 22 99 6666 0 0 0 0 0 11111111 99 0 99 88 2 88 1 4 7 9 2222222 4 777 4 0 6666666666 99 7 0 7 2 88888888888888 5 3 777 77 0000 7
consensus : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTTACGGCCC-TGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCG-G-GACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-A-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-GG-CGCGCAGAA-CCCTGTTCTCACTTC-TGAGTTCTTTG-ATTTCCCTTTCCTGG---CGGTCAAGAG--TCGCGC-GTA-TTTGC-AAAATCTCTCTCTCGAC-A--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTT----NAAGTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGA-----A----AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
Reference ( family-2485 ) : CTGTGCTAGCGACAGGCATTGGCACATTAAAA-ACATC---ACTGTTACGGCCC-TGAG--CG-C---TC-AAAACTAGT-GATACCTCACCTACAGTTNG-TGACGTTTCATTCTGAGTGAAAAGTTCTCAACGAA-GGTTAAAAGAAAGAAAAAC-A-CAANCATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-GCCG-G-GACTGGATTACT-AACTACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGTTAAACATTATC-ATGCGCATTA-AGCGACACCACCAT--AGTTCCAGAATC-A-GAAT-CANAATCGTAAACGTCGTCAGTATCA-CCGAAAGTGCTATCTACAACATCGTGGTTAACGTATATATT--AAATTTGGTTTGTCCACGGANCCCGCTA-TAAATAGT-CCAA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAN-ACTCCGCTATATTCGCTGTAACCTCCA-CC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGTAGTAA--TNAATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---N--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTCTAAGTCTCTC-A-ATCTCCG-CGTTGA-GTTTGTCCACGTC-AG-CGCGCAGAA-CCCTGTTCTCACTTC-TGAGTTCTTTG-ATTTCCCTTTCCTGG---CGGTCAAGAG--TCGCGC-GTA-TTTGC-AAAATCTCTCTCTCGAC-A--TAACTATTCGCAGAAC-ATGTTGTTAACAC-A-C-AAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGAAG-TGTAC-TAACGTT----NAAGTTTGT--CCGC-GTG--GAATGACG--AAACGCACTCGAGGTCATTTCTTATCTTGTCTGCAATG-ACGCCATC--TTTGTATAGAACG-GAACANTTGATAAGA-----A----AGACAGTGGATTT-TCACCATTCGAGAA--------GTC---AACTAAGATCACGTTACCGA-AGACAGATATCAAAACTAAATAGAATGTATA-NC-CCCGCATCTTTCTACATT
gi|1 : TAGTGACAGGCATTGGTACATTTAAATATCTC---ACTGCTAAGACCCCTGAAGCCG-C---TCCAAAACAACTTGCTAACTCACTAACAGTTTGGTGACGTTTCATTCTGAGTGAAAGGT-----------------AAAAAAGAAAAACAA-CAAT-ATTATGCTAGAACAT-CAGTTTAATCTCCATCCGGCAAAA-G-TGTTTTCGCCG-A-AGCTGAATTACTAAACTACCGCA-GTAAGT-GCACGTCATGGAGGAGCTACATGTTACACA-TGTC-ATGCACATTA-AGCGACACCAACAT--AGTTCCAGAATCAA-GAATGCAGAATCGTAAACGTCGGAAGTATCACCCGAAAGTGCTATCTTCAACATCGTGTTAAACGCATATATC--AAATTTTGTTTGTCCACGGAGCCCACTATTAGATAGT-CCAACGTAAAACA-AATAT-CAACCGATTACTT--GCGGGGCCTG-TGAAA-ATTCCA-TATAATCGTTATAACCTCCA-CC--GATT--TGTT-TTCA-GACAGTCAAGT-TTTAATG-AGAAAACTGAATGCTTGGGATTTGGC-CATTCC-TGATCCAAAACTGC-CACCTAAGAAGG-A-ACAGGGCTCAGGGGAT-GTCCTTG--T-GTGTCGTATTCGTTATCTCGTCA-GACTGT-GATGAT-CATGTCAAGTTTCTGAAACT--TTGTATC-T-CTCCTT-CATTCACTGCTCAGTTTTTT-TCCT---CGA-ATTTTTGTCAATCT--CGTGACTCAGGCA-GAGTGTCT--ACACCATTTTTAAGTCTCTTGA-ATATCCG-CGTTGA-GTTTG-CCACGTCAAG-CGCGCAGAAGCCCTA-TCTCACTTC-TGAGTTCTTTG-ATTTCCCTTTCCTGG---CGGGTAAAAT--ACGCGCGGTA-TTTCC-AAAATCTCTCCCTCGAC-AGTCAAATATTCGCAGAAC-A-GGTGTTAACAC-A-CAAAAAAATCAACAC--TAAGC----CG-A-TCATTGCTTCGAAG-CATACTTAACGTTA---TGAGTTTGT--CAGCAATGGAGAATGA-G--AAATGCACTTGA-GTGATTTCTTATCTTTTCTGCAATGCACCACATC--TTT---TAGAACG-G-ACAAT--GTAAGA-----ACACCAGACAGTGGCTTT-CCAATATCAGTCAA--------GTA---AACCAAGAT---GTTACCGA-AGACAG--ATTAAAACTAAATAGAATGTATAGGC-CCCACATCTTTCTACATT
gi|10 : t-CCCTGTTCTCACTTC-TGAGTTCTTTG-ATTTCCCTGTCCTGA---CGGGTAAGAG--TCGCGC-GAA-TTTGC-AAAATGTCTCTCTCAAC-A--TAACTATTCGCAGAAC-ATATTGTTCATAC-A-C-TAGAAATCACAACGTTAACCAGATCG-A-TTATTT-TTGAAAG--------------------AGTTTGTAACCACTGT-----ACGACG--AAAGACACTCAAGGTAATTCATTATCTTGTATGCAATG-ACACCACT--ATTG---AGAACG-GAAGATTTGATAAGA-----G----AAACGGTAGATTA-TTACgatgaacctgccattttcgtccacagtgctaacggt
gi|11 : CACCATTTTTAAGTCTCTC-A-ATCTCCG-CGTTTA-GT----CCACGTC-AG-TGCGCACAA-CCTTGTTCTCACTTC-TGAGTTCTTTG-ATTTCCCTTTCCTGG---CGATAAAGAG--TCGCAC-GTA-TTTGT-AAAATCTCTCTATTGAC-A--TAATTATTCGCAGAAC-ATGTTGCTAACAC-A-C-AAGAAA
gi|12 : CTGTGTTAGCGACAGATATTGGCACGTCAAAA-GCATC------------------------G-C---TC-AAAACTAAT-GATACCTCTCTTACAGTTTG-TGACGCTTGCTTCTGAGTGAAAAGTTTGCAACGAATGGT
gi|13 : cTAATA-ATATCCC-ATTGTTATGGCCC-TGAA--CA-CCATTC-ATAA--GAT-GACACTTTACCTACAGCTGG-TTATATCTCAGTATGACTGAAAAATTCTCAAa
gi|14 : -GAATA-CATACACGCC-----ACTTCCG-GGTG-CTG-TGAAG-ACCCCAGTATGAGCATCGTA---TCCA-C---GGTTAATGTT-TTCgc
gi|15 : tagaccattgCTGTGCTAGCGACAGACATTGAC-CACTTAAA-AC-TCAATACTGTTAAAACCC-TGAG--CGCC---CC-AAAATTAG
gi|2 : CTGTGCTAGCGACAGGTGTTGGCACAT-AAAA-ACATC---ACTGTTACAGCAC-TGAG--CG-C---TC-AAAACTAGT-GATACCTCATGTACAGCTAG-TGATGTTTCATTCTGAATGAAAAATTCTCAGCGAA-GGTTAAATCAAAGAAAGA------ATCATTTTGCTAGAAAAT-CAGTTTAATCTCCAACCGGCGAAA-GATGTTCT-GCCG-GTGACTGGATTACT-AATAACATAA-GC-AGT-GCATGCTATGGCAGAGCGA-ATGT-AAACATTATC-ACGTGCATTA-AGCGACACCACTAT--AGTTCCAGAATC-A-GAAT-CAAAATCGTTAACGTCTTCAGTTTCA-CCGTAAGTGCCATCTACAACATCGTGGTTAACGTATATATT--AAATCTGGTTTGTCCACGGACCGCAGTA-TAAATAGT-CCAA-GT-AAACA-CATATACACCGGA--ACTT-----GGG-CTG-TAAAT-ATTCCGCTATATTCGCTGTAACCTCCGCCC-AGATT--TGTT-TTCACGACA-TCGAAT-TTTAAGGGAGTGA--TTAATGCTT-GGATTTGGCTCATC-C-TTACTCAAA--TACGCAT---AGAAGGCA-ACA-GGCTCAGGGGAT-GTCCTTG--TGGTGTCGTATTCGTT-TCTCGTCAGGACTCT-GA-GATCCATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGA--CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTGCCATTAAGGTTTGTCCACGTC-AG-CGCGCAAAA-TCTTA-TCTCACTTC-TCAGTTCTTTG-ATTTCCCTTTCCTGG---CGGTCAAGAG--TAGCAC-GTATTTTGCGAAAATCTCCTTTTCGAC-A--TAGCTATTCGCAGAAC-ACGTTGTTAACACTC-C-AAAAAACCACAAC--TAAGC----CG-A-TCATTG-TTGGAAGATGTAC-TAGCGTTAGACTAGGTTTGT--CTTC-ATC--GAATGACG--AAATGCACTTGAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAAGGAGAACAATTGATAAGAACACCA----AGACAGTGGATTTCCCACAATT-----A--------GTCAGTAACCAAGACAACGTGACCGAGAGACAGAT-TCAAAACTAAATAG-ATATATA-ATACCCGCAACTTCTTGAATT
gi|3 : GCTAGTGACAGGCATTGACACATTAAAA-ACCTC---ACTGTTGCTGCCC-TTAG--CG-C---TC-AAAACTAGC-GATACCTCAACTACAGTTCG-TGACGTTTCATTCTGAGTGAGAAGTTATCAACGAA-AGGTAAAAGAAAGAAA------CAAACATTTTGCTAGAACAT-CAGTTTAATCTCCATCCGGCGAAA-GATGTTCT-TCCGTA-GACTGAATTACT-AACTATCTGA-GT-AGT-GCTTGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCACATTA-AGCGACACTACTAT--AGTTCTAGAATC-A-GAAT-CAATGTCGTTAGCTTCGTCAGTATCA-CCGAAAGTGGTAGCTACAACATCGTGGTTTACGTATATATT--AAATTTGGTTTCTCCATGGGTCCAGCTA-TAAATAGT-CCAT-GT-GAACA-CATACACACCAGA--ACCT--G-GGG--CTG-TGAAC-ACCCCGCTATATTCATTGTAACCTCCA-CCCAGATT--AGTT-TTCACGACA-TCGAAT-TTTAAGG-AGTAA--TTTATGCTT-GGATTTGGCTCATT-C-TGACTCAAA--TACGCAT---AGAATGCA-ACA-GGCTCAGGAGAT-ATTCTTG--T-GTGCCGTATTCGTT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAGTTTCTG--GTT--TTGTATCGT-CT-CTT-C-CTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGCG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-A-ATCTCCG-CGTTCA-GATTGTCCACGTC-GG-CGCGCAGAA-TCCTATTCTCACTTC-TGAGTTCTTTG-ATTTCCCTTTTCTGG---CGGTCAAGAG--TTGCGC-GTA-TTTGC-GAAATCTCCTTTTCGAC-A--TAACTATCCGCAGAAC-ATATTGTTAACAC-A-A-CAAAAATCACAAC--TAAGC----CG-A-TCATTG-TTGGATG-TGCAC-TAACGTA----AGTGTTTGT--CTGC-ATG--GAATGACG--AAATACACTTGAGGGCATTTCTTATCTTTTCTGCAATG-ACACTATC-------A-GGAACT-GAACAATTGATAAG
gi|4 : GAAACAAGAAC-ATCAAGAA-----CAAGAACATTCAGTTTAATTTCCACCCGGCGAAC-G-TGATGT-GCAG-G-GACTGCCCCACT-GATTACAGAAAGT-AGTTGCAGTTCATAGCGGAACGA-ATGTTAAAC-TTGTCTATGCGCATTAGAGCGGCACTACCATTCGATCCCAG--TC-GCGAGT-CATAATCGTAA------TTAGT-TCT-CC-AAAGTGCCACCTACAACATCATTATTAACGAA-ATATCGCAAAACGGGTTT-TCCAGGTGCCCTGGTAATTAACAGTTCCAA-GT-AAACAACGTATACACCGGA--AAGT----GGCG-CTGCTAAAA-ATTCCGCTAAATCCGCTGTAACCTCCA-CC-AAATT--TATGATACAC-ACA-TCAAAA-ATTAAGGT-GTCG--GAAGGGCTT-GGATTTGGTGCATT-CGTTACTCATG--TAGGT------GAAGGCAGACA-GGCTCGGGGGGT-GTCCTTGGCT-GTGACGTATCCG
gi|4 : TCGTCAGACTTCTTGA-GAACT-TATTCTGTTGCTT--GATCATTAT-TAGTACT-CTTTC-TTCACTG-T----TTGTTGTCATGTACGACA-TTTCATCA---TTACGTCAT-CGGACGCGATTGTCTTGGC-CCAT-TCTA-GTCTCTC-A-ATTTCCGTCG-TGA-GTTTGTCCACATC-AGCCGCGCAGAA-TCCTGTTCTCGCCTCTTAAGTTCTTTGCATTT-CCTTTCTAGGAAAGGG--GAGAGTTTCGCGC-GTA-TTTGT--AAATCTCTCTCTCGACAA--TAACTATT-GCAGAAC-ATGTCGTTAACAC-ATC-CAAAAATCACAAC--TAAGC----CGAA-TCATTG-TTGAAAG-TGTAC-TAACGTT----TAA-TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A----AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAatcattgagtgaaattaggtattatcagtcgtgtcgtcagacttcttgagaacttattctgttgcttgatcattattagtactctttcttcactgtttgttgtcatgtacgacatttcatcattacgtcatcggacgcgattgtcttggcccattctagtctctcaatttccgtcgtgagtttgtccacatcagccgcgcagaatcctgttctcgcctcttaagttctttgcatttcctttctaggaaaggggagagtttcgcgcgtatttgtaaatctctctctcgacaataactattgcagaacatgtcgttaacacatccaaaaatcacaactaagccgaatcattgttgaaagtgtactaacgtttaatttgtccgcgtggaatgacggaaaacacacagaggtcaattcttatcttgcctgcaatgatgcaaagtttgtatagggaacatttgataagaaaaactagattttcaccattcgagaacaactactgtcaattaaaatcacgttatttttatctttt
gi|5 : gaaacaagaacatcaagaacaagaacattcagtttaatttccacccggcgaacgtgatgtgcagggactgccccactgattacagaaagtagttgcagttcatagcggaacgaatgttaaacttgtctatgcgcattagagcggcactaccattcgatcccagtcgcgagtcataatcgtaattagttctccaaagtgccacctacaacatcattattaacgaaatatcgcaaaacgggttttccaggtgccctggtaattaacagttccaagtaaacaacgtatacaccggaaagtggcgctgctaaaaattccgctaaatccgctgtaacctccaccaaatttatgatacacacatcaaaaattaaggtgtcggaagggcttggatttggtgcattcgttactcatgtaggtgaaggcagacaggctcggggggtgtccttggctgtgacgtatccgatcattgagtgaaattaggtattatcagtcgtgAGAACAT-CAGTT-AATTTCCATCCGGCGAAAAGATGTTCT-CTCT-G-A--TGGCCAACT-GACAACAGAA-GT-AGT-GCATGCCATGGAGGAGCGA-ATGT-AAACATTATC-ATGCGCATTA-AGCGACACCACAAT--AGTTCCAGAATC---GAAT-CATAATCGTAAACGTCGTCAGTATCA-CTGAAAG-ACTATCAACAACATTCAGGTTAACGTATATATT--AAATT-GGTTTGTCCACGGAACC-ACTA-TAAATAGT-C-AA-GT-GAACA-CATATACACCGGA--ACTT--G-GGGG-CTG-TGAAACACTCCGCTATATTCACTGTAACCTCCA-CTGAAATT--TGTT-TTCACGACA-TCGAAAACTTAAGGT-GTAA--TGAATGCTT-GGATTTGGTTCACT-A-TGACTCATG--TAGGCAT---AGAAGGCA-ACA-GGCGCAGGGGATTGTCCTTG--T-GTGTCGTATTCGTT-TCT-GTCAG-ACT-T-GA-GATC-ATATTAAACTTCTG--GTT--TTCTATCGT-CT-CTT-C-TTCACTG-TCA--TTGTT-TCCT---CGA-A-TTTCGTCA---T--CGTGAC-CGGGGG-GAGTGTCT--ACACCATGTTTAAGTCTCTC-ACATCTCCG-CGTTGA-GTTTGTCCACGTC-GG-CGCGCAGAA-CCCTGTTTTCACTTC-TGAGTTCTTTG-ATTTCCCTTTCCTGG---CGGTCAAGTG--TTGCAC-GTA-TTTGT-AAAATCTCACTCTCGAC-A--TAACTATCCGCAGAACAATATTGTTAACA--A-C-AAAAAATCACAAC--TAAGC----CG-ATTCATTG-TTGGAAG-TGTAC-TAACGTT----AAAGTTTG---CTGC-ATG--GGGTGACG---AATGCACTTGAGGGCATTTC-TGTCTTGTCTGCAATG-ACACTATC-------AT-GAACT-GAACAATTGATAAGA-----ACACCAGACAGTGAATTG-TCACAATTAGAG-A--------GT----AACTAAGATCACG---CTGA-AGACATATATCAAtttttatctttt
gi|6 : caAAC--TAAGC----CG-A-TCATTG-TTGAAAG-TGTAC-TAACGTT----AATCTTTGT--CCGC-GTG--GAATGACG--GAAAACACACGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAATCAGTTTGTATA----G-GAACATTTGATAAGA-----A----AAAC--TAGATTT-TCACCATTCGAGAA----------C---AACTATG-TCACATTAttatttttaattcttct
gi|7 : AC--TAAGC----CG-AATCATTG-TTGAAAG-TGTAC-TAACGTT----TAA-TTTGT--CCGC-GTG--GAATGACGGAAAACACAC-AGAGGTCAATTCTTATCTTGCCTGCAATG-ATGCAAAG--TTTGTATAG---G-GAACATTTGATAAGA-----A----AAAC--TAGATTT-TCACCATTCGAGAACAACTACTGTC---AATTAAAATCACGTTAaatcacgttatttttatcttttattgtacatgtatatactagtatttcattttgtacatatcgaacacacccaactcctgtgtgggcctccattttacggttcccagttcaaaacctcggttcactgaacaaatttaatataccgttcagtccgctggccatgagttgcatataacatgttacttatcaaacaagtttaaccaatgtgaactgttttttcgctggcaatggaaattcgttatattactatatacatttaagggttggttaacaatacatggccctggagttcactataaccgtgtttatgtgtttaagtattgcagttatgttttataatagttttgaagttcgttatagaaagtttttacttgtactgggttatagcatgtatatataaatataatcattatcacgagtcaacacactctagaattcctgttgggaaggggtaaaatagtattttccaatgccaacccctgattgcaattatttgataaattctcataaaaaataatcggaaggcatatttcttgatatttaatctacaataaattattcacgaattataagtgaatggattgggtcagcaggcaacagcctatacctctcctctcttgtatatataattgcccaaaattttttaaaacaaacgaataagagacatgcttttcaactttttgatcaaatttaattaatatttagct
gi|8 : TT-TCTCGTCAG-ACTCT-GA-GATC-ATATTAAATTTCTG--GTT--TTGTATCGT-CT-CTT-C-TTCACCG-TCA--ATGTT-TCCT---CGA-A-TTTCGTCA---G--GATGAC-CAGGCG-AAGTATCT--ACACCATGTCTAAGGCTCTC-A-ACCTCTG-CATTAA-GTTTGTCCACGTC-tttttatcttttattaacatgtagtatactgtatttcattttttacatatcgaacaccacccaactcctgtgggagccccattttacgggtttccagtcaaacctcggttcatggacatttaaataaccgccagtccgactggccatgagtttgctataaccatttttactgtacaaccaaaagttttaccaataggaactgtttcttcgctgcaatggaaattcgtttataactataacatttaaggttggttaaatgctggccctgggaagttcactataaccgttatttattgtttaatattgagtttatgtttatatagtttcggaggttcgttaaaataagtttacttactgggatatactaatttctctcacgagtcaacacacttatctagaattccttgttgacggaagggactcggtaaaatgtctttccatgcaaccctgattgcaatttaattttgataaatttctcataaaaaaaatatcggaagcattcttcttgactatttaatctatgaataaatttattcacaatgaaagttgaatcgagattgggcagcaggctaagcagcctataccccttctcccttcctttgatataaatttgcccaaatatttaaatcaaacgaataaagacatgcctttttcactttttgatcaaatgtattatattagctt
gi|8 : GAGGTAATTTCTTATCTTGTATGCAATG-ACACCATC--TTT-TATGGAACG-GAACAATTGATAAGA-----A----nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaggtaatttcttatcttgtatgcaatgacaccatcttttatggaacggaacaattgataagaac
gi|9 : tttctcgtcagactctgagatcatattaaatttctggttttgtatcgtctcttcttcaccgtcaatgtttcctcgaatttcgtcaggatgaccaggcgaagtatctacaccatgtctaaggctctcaacctctgcattaagtttgtccacgtcnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAAGAA--TCGCGC-GTA-TTTCC-AAAATCTCTCCCTCGAC-A--TAAATATTCGCAGAAC-AGGTTGTTAACAC-A-C-AAAAAAc
gi|9 : tCTAAATAGA-TGTATA-CC-CCCACATCTTTCTACATTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctaaatagatgtatacccccacatctttctacattgataacctgcatttcgtccactacagtgctaacggt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TAATACTTCATGTACAGCTTGTGACCTGTCAATTTGAATGACAAATTCTCGATAGGGTGTAA
Unaligned ( gi|17 ): AATTTTATTCACAAAAATTTTAATGGGATTGGGCAGCAGGCAATAACCTAT
Unaligned ( gi|18 ): ATGACACTTTACTTACAGCTGGTTGACTGAAAAGTTCTCAAGC