lowQualScore : 4444444444444444444444444444444 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 6666 4 4 777 55 4 666666666 4 4 4 888888 4 1111111111111111111111111111111 4 1 4 4 4 33 1 4 55 4 4 4 4 4 55 666666 4 4 4 444444 666 4 55 77777777 4 4 4 1 4 4 4 55 4 11 4 4 1 4 4 4 4 4 4 4 1 1 4 55555555 1 222222 1 1 11 1 111 22 888888888888888888888888888888888 11 1 5555 111 777777777777 1111 33 5555555555 55555555555555 44444444444444 3333333333 11111 222 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 1 1
lowQualScore : 1111 0 0 000 55 0 444444444 0 0 0 222222 0 9999999999999999999999999999999 0 7 6 0 0 0 44 7 0 55 0 0 0 0 0 55 777777 0 0 0 222222 111 0 55 22222222 0 0 0 5 6 0 0 0 55 0 22 0 0 5 0 0 0 0 0 0 0 7 5 0 99999999 5 666666 3 7 2 88 999 0 111 3 77777 77 2 999999999999999999999999999999999 44 3 7777 888 9 6 999999999999 2222 5 8 1 77 6 2222222222 9 66666666666666 99 77777777777777 2 6 6666666666 6 55555 99 1 666 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 88 1 5 8 5 3 9
lowQualScore : .... . . ... .. . ......... . . . ...... . ............................... . . . . . . .. . . .. . . . . . .. ...... . . . ...... ... . .. ........ . . . . . . . . .. . .. . . . . . . . . . . . . . ........ . ...... . . . .. ... . ... . ..... .. . ................................. .. . .... ... . . ............ .... . . . .. . .......... . .............. .. .............. . . .......... . ..... .. . ... .......................................................................................................................................................... .. . . . . . .
lowQualScore : 0000 0 0 000 00 0 000000000 0 0 0 000000 0 0000000000000000000000000000000 0 0 0 0 0 0 00 0 0 00 0 0 0 0 0 00 000000 0 0 0 000000 000 0 00 00000000 0 0 0 0 0 0 0 0 00 0 00 0 0 0 0 0 0 0 0 0 0 0 0 0 55555555 5 000000 3 3 3 33 777 0 000 2 22222 88 5 222222222222222222222222222222222 33 3 3333 888 2 5 555555555555 0000 4 0 8 00 7 0000000000 6 88888888888888 22 55555555555555 2 7 5555555555 7 22222 66 8 000 4444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 99 4 7 1 4 0 5
consensus : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATGTC-AGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAGTC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCCA-GTGTTT--ACCANGTG-ACTGT---ATTA---ATA-CACGTGC-TATTTCC--CCCAGNAATTATTGGGTATC-GTNC-ATA--TCTNA-CTACCC-TTTAGTGTNTT--ACACATG-AT--A-A-GCA-TAATGAATTTAAGTCTGGA---A--TAG--GTCCTTATTCCAATATAC---TGAA-GTCGACGAACT-CA--ATGTTT-AA-AA-C---TTACCGACGCCAT-TNTTTTC-TTTCCGANC------------AC----------G--------GCGCAA--TAACG--------TAC------AAATAGA-G--CAAA-----CCGAGAGT---ATC--T-AA-AGCGAGANTGAACTAAAAATNTCTC-A-CCTAAGTCC--CTTTCATCCGGGATGAAATCAAATAG-TTTACGTTGCACAAGGT-ATTAT
Reference ( gi|1 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTG-ATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCGTTTT--CAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAATAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCCA-GTGTTTTGACCAGGTGGACTGTCTCATTAAGCATAACACGTGC-TATTTTCTTCCCTTAAATTATTGGGTATCAGTCCCATAATTCTTA-CTAACC-TTTAGTGTTTTTCACACATG-AT--A-A-GCAATAATGAATCTAAGTCTAGA---A--TAG--GTCCTTATTCCAATATGC---TGAAGGTCAACGAACT-CA-AATGTTT-AA-AA-C---TTGCCTACACCAT-GTTTTTCGTTGCCG-CT------------A-----------G--------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---ATC-GT-AA-AGCAAGAGTGAACTAAAAATGTCTT-A-CTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAG-TTTAAGTTGTATAAGGTAATTAT
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|14 : aATAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCCA-GTGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|3 : gatAATGTC-AGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCCA-GTGTT--GACCAGGTG-ACTGTCTCATTA-GCATAACACGTGC-TATTTTC---CCTTAAATTATTGGGTAT--GTCC-ATA--TCTTA-CTAACC-TTTAGTGTTT--CACACATG-AT--A-ATGCA-TAATGAATCTA-GTCTG-----A--TAG--GTCCTTATTCCAATATGC---TGA--GTCAACGAACT-CA-A-TGTT--AA-AA-C---TTGCCTACACCATTGTTTTTC-TTGCCG-GC------------A-----------G--------GCGCAA--TA-CG--------TAC------AAATAAA-G--CAAA-----CCGAAAGT---ATC--T-AAGAGCAAGAGTGAACTAAAAATGTC-T-A-CTT-AGTC---TTTTCATTTGGGATCAAATCAAATAG-TTTAAGTTGTACAAGGT-ATTAc
gi|7 : AAGTACAGTGTAGTT--TC---AAA-AC-A-CAC-CTTTTGGAAAATGAGCCATGGGTTT------AGTATAC-----AATTAA--AT--CACGTGCACATTT----CCCAGTAATTCTTGG--ACCCGTGC-ATA--TCTAA-CTACCC-TTTACTGTTTT--ACACATGCAT--A-G---AATAAGGA
gi|4 : aatataagccaaatcaatgcaagtgAAA-AC-ACAATTC-----GAAAC-GAG---------TT-ACCACGTGACTTGT---AT-----ATACCACGTGT-TATTTCC--CCCAGCAATTATTGGATATC---TTCAT-ATTC-AA-GTACCC-TTTAGTGTGTT--GCATATG-GT--CTA-GC-ACAATGAATTTAA-TTT-GATT-ACTTAGTAGTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATAATGTAC-AATAA-A---TAACTGACGTCAT-TCTTTTC-TTTCCGACC------------ACATGTGTCAGTG--------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GTC--T-GA-------ATTGAACTTAAAATTTC-G-A-CCTA--TTC--CTTTCATCCAGGATGAAATCAAATAG-TTTACTTTGCGCAAGTTAtgttcgcgataagattcca
gi|5 : caaacagaaattgtgagaaAAATC-TTGGGTAT--GTGC-ATA---CCTAGCTACCA-TTTAGTGCATT--ACGCAAG-ATG-A-A-GCA-TAATGAATTTAA-TC--GA---A--CAA--GTCCTTATTCCAATAT-C---T-ATCGTCAAAGAACT-C--GATG-TT-AA-TA-C---TTACCGGCGCCAT-TATTTTC-TTTCCG-GTCACGTGTGCATGA-----------GGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGTTAAATTAGTCAA-AGTGAAACGGAGCTAAAA---TTTC-G-ACCAATTC---CTTTCATCTGAGATGAAATAAGACAG-TGTACGTTGCACTAGGT-ATTATtt
gi|11 : tggnctccagcAACCATTTAGTGTTCT--ACAAATA-AT--CTA-GCA-CAATAAAT-TAAGTCTG-----A--TAG--AACCTTGTTCTTATAGAT---AAAAAAT--ACGAACT-C----TGTAT-AA-AAAC---TTACCAACATCaatgtgccagtgttataattacattaccaatgttag
gi|12 : TGCCCTTTACACAGG-ATTTA-A--CA-TAATGAATTTA-GCCTG-----A--TGT--GTCCTTATTTCAACAT-C---TGCA-GTCGATGAACT-CG-TATG-TC-AA-AA-T---TT
gi|6 : catatctaacAAATTCAGACTTA--TAG--CTTTTTATTCCAATATATATATGAAAG---ATAAACT-CA----GTTTGAA-AA-CTAATTGATT---CCAT-TGTTTTC-TTTCTGACT------------AT----------G--------GGTCA-----------------AC------AAAT-GATG--T--------CCGAGAAT--------T-AA-ATC-AGAATGAAAT-----TATTTCAA-CCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAG-TTTACATTGCATAAGa
gi|10 : atttaacacaacAGAATGAACTTAAAATTTCG--A-CTTATTTTC----TTCATCCAAGATGAAATCAAATAACTTTCAG-TGCATAAGTTAttttacacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|9 : AATGAACTAAAAA-ATTTC-AACCT--GTCCC--TTTCATCTGGGATGAAATCCAATAG-TTTACATTCCAGAA-GTCATTAcatgtataacaccatcgccaatacattgaccatgtaaa
gi|13 : ttaaatgacat-A-CTTAAAACT---TTTCATCTGGGATGAAATCAAATAG-TTTACGTTGAACAAGGT-ATTATcatactgccattatacataaagaatgttagtttggaaacccaacattttttcattgtt
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTTATCACATAACACCTTTGTGAATCTTTAAACAAACAATGTTAATTTGAGAAAAAATGTATTCGAATGAATGTGCCTTTTAAAGAAATGTGTTTTCGAAATTTTGAATAGCAGTTGGA
Unaligned ( gi|15 ): TTCTTTCGAAACGAGCCTACTGCAGACCACGTGACTATCTAATTAGCATACTGCGCGTTAC
Unaligned ( gi|16 ): CTCCCAGCAATTCTTGGATCTTTGTATATCTAACTACTCTTTA
Alignments
lowQualScore : 1111111111111111111111111111111 111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222 2 1 333 22 2 22 22 1 2 2 22 2 1 8888888888888888888888888888888 2 2 2 2 2 22 2 2 2 2 2 22 1 22 2 2 2 2 22 2 11 333 2 2 2 2 2 1 2 22 2 1 2 1 1 2 2 1 2 2 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777 22 1 1 1 11 22 111 77777777777777777777 222 222 444444444 22222 2222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333 11111 1 333333333
lowQualScore : 1111 0 5 555 77 0 44 77 5 0 0 77 0 5 6666666666666666666666666666666 0 4 0 0 0 88 4 0 33 0 0 0 0 0 77 5 77 0 0 0 0 55 77 0 88 555 0 0 0 0 3 0 5 0 77 0 5 0 3 5 5 0 0 5 0 0 4 3 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999 00 7 6 2 0 3 0 33 3 8 8 8 9 00 888 111 1 8 11111111111111111111 8 99 3 1 3 3 222 77 77 1 3 77 5 77 000 5 5 0 66 111111111 3 55555 888 1 0 0 6666666666666 5 1 1 1 8 8 0 555555555555555555555555555555555555555555555555555555555555555555555555555555555555 3333333333 88888 1 2 1 666666666 66 0 2 5
lowQualScore : .... . . ... .. . .. .. . . . .. . . ............................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . ............................................................................... .. . . . . . . .. . . . . . .. ... ... . . .................... . .. . . . . ... .. .. . . .. . .. ... . . . .. ......... . ..... ... . . . ............. . . . . . . . .................................................................................... .......... ..... . . . ......... .. . . .
lowQualScore : 0000 0 5 000 55 0 00 55 5 0 0 55 0 0 5555555555555555555555555555555 0 0 0 0 0 00 0 0 00 0 0 0 0 0 55 0 55 0 0 0 0 00 55 0 55 000 0 0 0 0 0 0 5 0 55 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0000000000000000000000000000000000000000000000000000000000000000000000000000000 77 3 7 0 0 2 5 88 2 0 0 0 3 22 333 666 0 0 22222222222222222222 0 22 5 0 0 2 777 77 99 0 0 99 7 99 666 0 0 1 77 444444444 0 77777 777 7 4 4 7777777777777 7 0 4 0 0 0 6 222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8888888888 44444 0 4 0 777777777 11 7 5 0
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAATAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCACGT-GACT-GTCTCATTA---AT-A-C-ACGTGC-TATTTCC--CCCAGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCTG-------AATAGGTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TC-AA-AACTTACCGACGCCATTNTTTT-C-TTTCCGACCAC----------G------------------GCGCAA--TAACG--------TAC------AAATA--AAAGCAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTAAAAATNTCTNA-CCTA-GTCC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGNT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAGTC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GT---ATTA---AT-A-C-ACGTGC-TATTTCC--CCCAGNAATTATTGGGTATC-GT-NCATA--TCTNACTACCCTTTAGTGTNTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCTGG------AATAGGTCCTTATTCCAATATAC---TGAA-GTCGACGAACTC---A-ATGT-TT-AA-AACTTACCGACGCCATTNTTTT-C-TTTCCGANCAC----------G------------------GCGCAA--TAACG--------TAC------AAAT---AGAGCAAA-----CCGAGAGT---AT---C-TAA-AGCGAGANTGAACTAAAAATNTCTCA-CCTAAGTCC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGGT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTG-ATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCGTTTT--CAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAATAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGGACT-GTCTCATTAAGCATAA-C-ACGTGC-TATTTTCTTCCCTTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATG-A--T-A-A-GCAATAATGAATCTAAGTCTAG------AATAGGTCCTTATTCCAATATGC---TGAAGGTCAACGAACTCA--A-ATGT-TT-AA-AACTTGCCTACACCATGTTTTT-CGTTGCCG-CTA-----------G------------------GCGCAA--TAACG--------TAC------AAATA--AAAGCAAA-----CCGAAAGT---AT---CGTAA-AGCAAGAGTGAACTAAAAATGTCTTA-CTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : AGAATGAACTTAAAATTTCG-A-CTTA--TTT--TCTTCATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATA-A--T-CTA-GC-ACAATAAATT-AAGTCTG--------ATAGAACCTTGTTCTTATAGA----TAAA-AAATACGAACTC------TGTATA-AA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : aCATA--TCTAACTGCCCT--------TT--ACACAGG-ATTT-A-A--C-ATAATGAATTT-AGCCTG--------ATGTGTCCTTATTTCAACAT-C---TGCA-GTCGATGAACTC---GTATG--TC-AA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaATAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTGattttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAA-CGAGCCTA-CTGCAG--ACCACGT-GACT-ATCTAATTA---GC-A-T-AC-TGC-c
gi|16 : CT--CCCAGCAATTCTTGGATCTT--T-GTATA--TCTAACTACTCTTTAgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCC-A-GTGTTG--ACCAGGT-GACT-GTCTCATTAGC-AT-AAC-ACGTGC-TATTTTC--CCT-TAAATTATTGGGTAT--GT-CCATA--TCTTACTAACCTTTAGTGTTTC--ACACATG-A--T-A-ATGC-ATAATGAATCTA-GTCTG--------ATAGGTCCTTATTCCAATATGC---TGA--GTCAACGAACTC---A-ATGT-T--AA-AACTTGCCTACACCATTGTTTTTC-TTGCCG-GCA-----------G------------------GCGCAA--TA-CG--------TAC------AAAT---AAAGCAAA-----CCGAAAGT---AT---C-TAAGAGCAAGAGTGAACTAAAAATGTCT-A-CTTA-GTCT---TTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAAC-GAG---------TT--ACCACGT-GACTTGT---AT-----AT-A-CCACGTGT-TATTTCC--CCCAGCAATTATTGGATATC--T-TCATA--TTCAAGTACCCTTTAGTGTGTT--GCATATG-G--T-CTA-GC-ACAATGAATTTAA-TTTGATTACTTAGTA-GTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATA-ATGT-AC-AATAAATAACTGACGTCATTCTTTT-C-TTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GT---C-TGA-------ATTGAACTTAAAATTTC-GA-CCTA--TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCCAGCAAATCTTGGGTAT--GT-GCATA--CCTAGCTACCATTTAGTGCATT--ACGCAAG-A--TGA-A-GC-ATAATGAATTTAA-TC--G------AACAAGTCCTTATTCCAATAT-C---TATC-GTCAAAGAACTC---G-ATGT-T--AA-TACTTACCGGCGCCATTATTTT-C-TTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATT---AGA-CAAAGATGTCCGAGAGTTAAATTAGT-CAA-AGTGAAACGGAGCT-AAAATTTC-GA-CC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggn-A-AC-ACAACAAATTCAGACTT---------ATAGCTTTTTATTCCAATATATATATGAA-A--GATAAACTC---A---GT-TTGAA-AACTAATTGATTCCATTGTTTT-C-TTTCTGACTAT----------G------------------GGTCAA-----------------C------AAAT---GATGT--------CCGAGAAT----------TAA-ATC-AGAATGAAAT-----TATTTCAACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGaatgtgccagtgttataattacattaccaatgttag
gi|7 : atttAAGTACAGTGTAGTT--T---CAAA-AC-A-CAC-CTTTTGGAAAATGAGCC-ATGGGTTT--AGTATAC-AATT-A-------A---AT---C-ACGTGCACATTTCC--C--AGTAATTCTTGGAC-CC-GT-GCATA--TCTAACTACCCTTTACTGTTTT--ACACATGCA--T---A-GA-ATAAGGAttttacacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : aatataagccaaatcaatgcaagtg--CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : AATGAACTAAAAA-ATTTCAACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 11 1 11 11 1 1 1 11 1 1 11 77777777777777777777777777 1 1 1 1 1 11 1 1 1 1 1 11 1 11 1 1 1 1 11 1 11 222 1 1 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 11 222 11 222222 1 11 22 111 1111111 3333333333 222 222 22222222 11111 22222 111 11111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333 11111 1 22 111
lowQualScore : 5 5 5 5 111 88 5 66 77 5 5 5 77 5 5 88 66666666666666666666666666 5 1 5 5 5 22 1 5 66 5 5 5 5 5 88 5 88 5 5 5 5 22 88 5 88 111 5 5 5 5 1 5 5 5 88 5 5 5 1 5 5 5 5 5 5 5 1 1 5 88 111 0 3 22 111111 0 3 7 33 3 8 8 8 9 00 888 111 5 999 3333333 0 1111111111 8 99 6 33 1 3 222 77 77 77 5 77 000 5 5 0 66 55555555 77 99999 888 1 0 0 77777 444 5 1 1 1 8 8 0 6 6 11111111111111111111111111111111111111111111111111111111111111111111111111111111 3333333333 88888 1 2 1 77 333 66 0 1 4
lowQualScore : . . . . ... .. . .. .. . . . .. . . .. .......................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . .. ... . . .. ...... . . . .. . . . . . .. ... ... . ... ....... . .......... . .. . .. . . ... .. .. .. . .. ... . . . .. ........ .. ..... ... . . . ..... ... . . . . . . . . . ................................................................................ .......... ..... . . . .. ... .. . . .
lowQualScore : 5 5 0 5 000 00 5 55 55 5 5 5 55 5 0 55 55555555555555555555555555 5 0 5 5 0 00 0 5 55 0 5 0 5 5 55 0 00 5 5 5 5 00 55 0 55 555 5 5 5 5 0 5 5 5 00 5 0 0 0 0 5 5 0 0 5 5 0 0 5 33 888 2 0 55 555555 0 2 0 88 2 0 0 0 3 22 333 666 0 222 4444444 8 6666666666 0 22 7 55 0 2 777 77 99 99 7 99 666 0 0 1 77 00000000 99 66666 777 7 4 4 77777 111 7 0 4 0 0 0 6 8 4 88888888888888888888888888888888888888888888888888888888888888888888888888888888 8888888888 44444 0 4 0 77 777 11 7 0 4
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-G-ACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-C-TTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTAAAAATTTC-GACCT-AGTCC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCACGT-G-ACT-GTCTCATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TCAA-AACTTACCGACGCCATTNTTTT-C-TTTCCGACCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTAAAAATNTCTNACCT-AGTCC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGNT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTT-GATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCG--TTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGG-ACT-GTCTCATTAAGCATAA-C-ACGTGC-TATTTTCTTCCC-TTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATG-A--T-A-A-GCAATAATGAATCTAAGTCTAGA--A--TAG--GTCCTTATTCCAATATGC---TGAAGGTCAACGAACTCA--A-ATGT-TTAA-AACTTGCCTACACCATGTTTTT-CGTTGCCG-CTA-----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---AT---CGTAA-AGCAAGAGTGAACTAAAAATGTCTTACTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : AGAATGAACTTAAAATTTC-GACTT-ATTTT--CTT-CATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATA-A--T-CTA-GC-ACAATAAATT-AAGTCT-G---A--TAG--AACCTTGTTCTTATA-GA---TAAA-AAATACGAACTC------TGTATAAA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : aCATA--TCTAACTGCCC--------TTT--ACACAGG-ATTT-A-A--C-ATAATGAATTT-AGCCT-G---A--TGT--GTCCTTATTTCAACAT-C---TGCA-GTCGATGAACTC---GTATG--TCAA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaA--TAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTGattttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAAC-GAGCCTA-CTGCAG--ACCACGT-G-ACT-ATCTAATTA---GC-A-T-AC-TGC-c
gi|16 : CT--CCC-AGCAATTCTTGGATCTT--T-GTATA--TCTAACTACTCTTTAgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCC-A-GTGTTG--ACCAGGT-G-ACT-GTCTCATTAGC-AT-AAC-ACGTGC-TATTTTC--CCTTA--AATTATTGGGTAT--GT-CCATA--TCTTACTAACCTTTAGTGTTTC--ACACATG-A--T-A-ATGC-ATAATGAATCTA-GTCT-GA-----TAG--GTCCTTATTCCAATATGC---TGA--GTCAACGAACTC---A-ATGT-T-AA-AACTTGCCTACACCATTGTTTTTC-TTGCCGGC-A-----------G------------------GCGCAA--TA-CG--------TAC------AAATAAA-G--CAAA-----CCGAAAGT---AT---C-TAAGAGCAAGAGTGAACTAAAAATGTCT-ACTT-AGTCT---TTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAAC-GAG---------TT--ACCACGT-G-ACTTGT---AT-----AT-A-CCACGTGT-TATTTCC--CCC-AGCAATTATTGGATATC--T-TCATA--TTCAAGTACCCTTTAGTGTGTT--GCATATG-G--T-CTA-GC-ACAATGAATTTAA-TTT-GATTACTTAGTAGTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATA-ATGT-ACAATAAATAACTGACGTCATTCTTTT-C-TTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GT---C-TGA-------ATTGAACTTAAAATTTC-GACCT-A-TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCC-AGCAAATCTTGGGTAT--GT-GCATA--CCTAGCTACCATTTAGTGCATT--ACGCAAG-A--TGA-A-GC-ATAATGAATTTAA-TC--GA--A--CAA--GTCCTTATTCCAATAT-C---TATC-GTCAAAGAACTC---G-ATGT-T-AA-TACTTACCGGCGCCATTATTTT-C-TTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGTTAAATTAGT-CAA-AGTGAAACGGAGCT-AAAATTTC-GACC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggn-A-AC-ACAACAAATTCAGACTT-----A--TAG--CTTTTTATTCCAATATATATATGAA-A--GATAAACTC---A-GT-T-TGAA-AACTAATTGATTCCATTGTTTT-C-TTTCTGACTAT----------G------------------GGTCA-----------------AC------AAAT-GATG--T--------CCGAGAAT----------TAA-ATC-AGAATGAAAT---TATTTC-AACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGTT--TTAaatgtgccagtgttataattacattaccaatgttag
gi|7 : atttATATAAGCCAAAT---CAATGCAA--GTG-------AAGTACAGTGTAGTT--T---CAAA-AC-A-CAC-CTTTTGGAAAATGAGCC-ATGGGTTT--A----GT-ATAC------AATTA---AA-T-C-ACGTGCACATTTCC--C---AGTAATTCTTGGAC-CC-GT-GCATA--TCTAACTACCCTTTACTGTTTT--ACACATGCA--T---A-GA-ATAAGGAcacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : a--CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : AATGAACTAAAAAATTTCAACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 11 1 11 11 1 1 1 11 1 1 11 77777777777777777777777777 1 1 1 1 1 11 1 1 1 1 1 11 1 11 1 1 1 1 11 1 11 222 1 1 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 11 222 11 222222 1 11 22 111 1111111 3333333333 222 222 22222222 11111 22222 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333 11111 11 111
lowQualScore : 5 5 5 5 111 88 5 66 77 5 5 5 77 5 5 88 66666666666666666666666666 5 1 5 5 5 22 1 5 66 5 5 5 5 5 88 5 88 5 5 5 5 22 88 5 88 111 5 5 5 5 1 5 5 5 88 5 5 5 1 5 5 5 5 5 5 5 1 1 5 88 111 0 3 22 111111 0 3 7 33 3 8 8 8 9 00 888 111 1 8 2222222 0 1111111111 8 99 6 33 1 3 222 77 77 77 5 77 000 5 5 0 66 55555555 77 99999 888 1 0 0 77777 222 5 1 1 1 8 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333 88888 1 44 77 333 6 66 0 1 4
lowQualScore : . . . . ... .. . .. .. . . . .. . . .. .......................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . .. ... . . .. ...... . . . .. . . . . . .. ... ... . . ....... . .......... . .. . .. . . ... .. .. .. . .. ... . . . .. ........ .. ..... ... . . . ..... ... . . . . . . ................................................................................ .......... ..... . .. .. ... . .. . . .
lowQualScore : 5 5 0 5 000 00 5 55 55 5 5 5 55 5 0 55 55555555555555555555555555 5 0 5 5 0 00 0 5 55 0 5 0 5 5 55 0 00 5 5 5 5 00 55 0 55 555 5 5 5 5 0 5 5 5 00 5 0 0 0 0 5 5 0 0 5 5 0 0 5 33 888 2 0 55 555555 0 2 0 88 2 0 0 0 3 22 333 666 0 0 2222222 8 6666666666 0 22 7 55 0 2 777 77 99 99 7 99 666 0 0 1 77 00000000 99 66666 777 7 4 4 77777 666 7 0 4 0 0 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444 8888888888 44444 0 99 44 777 3 11 7 7 4
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACT-NAAAATTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACT-AAAAATTTC-GACCT-AGTCC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTT-GATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCG--TTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGGACT-GTCTCATTAAGCATAA-C-ACGTGC-TATTTTCTTCCC-TTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATG-A--T-A-A-GCAATAATGAATCTAAGTCTAGA--A--TAG--GTCCTTATTCCAATATGC---TGAAGGTCAACGAACTCA--A-ATGT-TTAA-AACTTGCCTACACCATGTTTTT-CGTTGCCGCTA-----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---AT---CGTAA-AGCAAGAGTGAACT-AAAAATGTCTTACTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : AGAATGAACT-TAAAATTTC-GACTT-ATTTT--CTT-CATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATA-A--T-CTA-GC-ACAATAAATT-AAGTCT-G---A--TAG--AACCTTGTTCTTATA-GA---TAAA-AAATACGAACTC------TGTATAAA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : aCATA--TCTAACTGCCC--------TTT--ACACAGG-ATTT-A-A--C-ATAATGAATTT-AGCCT-G---A--TGT--GTCCTTATTTCAACAT-C---TGCA-GTCGATGAACTC---GTATG--TCAA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaA--TAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTGattttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAA-CGAGCCTA-CTGCAG--ACCACGT-GACT-ATCTAATTA---GC-A-T-AC-TGC-c
gi|16 : CT--CCC-AGCAATTCTTGGATCTT--T-GTATA--TCTAACTACTCTTTAgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCC-A-GTGTTG--ACCAGGT-GACT-GTCTCATTAGC-AT-AAC-ACGTGC-TATTTTC--CCTTA--AATTATTGGGTAT--GT-CCATA--TCTTACTAACCTTTAGTGTTTC--ACACATG-A--T-A-ATGC-ATAATGAATCTA-GTCT-GA-----TAG--GTCCTTATTCCAATATGC---TGA--GTCAACGAACTC---A-ATGT-T-AA-AACTTGCCTACACCATTGTTTTTCTTGCCGGC-A-----------G------------------GCGCAA--TA-CG--------TAC------AAATA-AAG--CAAA-----CCGAAAGT---AT---C-TAAGAGCAAGAGTGAACT-AAAAATGTC-TACTT-AGT-C--TTTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAAC-GAG---------TT--ACCACGT-GACTTGT---AT-----AT-A-CCACGTGT-TATTTCC--CCC-AGCAATTATTGGATATC--T-TCATA--TTCAAGTACCCTTTAGTGTGTT--GCATATG-G--T-CTA-GC-ACAATGAATTTAA-TTT-GATTACTTAGTAGTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATA-ATGT-ACAATAAATAACTGACGTCATTCTTTT-CTTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GT---C-TGA-------ATTGAACT-TAAAATTTC-GACCT-A-TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCC-AGCAAATCTTGGGTAT--GT-GCATA--CCTAGCTACCATTTAGTGCATT--ACGCAAG-A--TGA-A-GC-ATAATGAATTTAA-TC--GA--A--CAA--GTCCTTATTCCAATAT-C---TATC-GTCAAAGAACTC---G-ATGT-T-AA-TACTTACCGGCGCCATTATTTT-CTTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGTTAAATTAGT-CAA-AGTGAAACGGAGCT--AAAATTTC-GACC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggn-A-AC-ACAACAAATTCAGACTT-----A--TAG--CTTTTTATTCCAATATATATATGAA-A--GATAAACTC---A-GT-T-TGAA-AACTAATTGATTCCATTGTTTT-CTTTCTGACTAT----------G------------------GGTCAA-----------------C------AAAT-GATG--T--------CCGAGAAT----------TAA-ATC-AGAATGAAAT-TA---TTTC-AACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGTT--TTAaatgtgccagtgttataattacattaccaatgttag
gi|7 : atttATATAAGCCAAAT---CAATGCAA--GTG-------AAGTACAGTGTAGTT--T---CAAA-AC-A-CAC-CTTTTGGAAAATGAGCC-ATGGGTTT--AGTAT----AC------AATTA---AA-T-C-ACGTGCACATTTCC--C---AGTAATTCTTGGAC-CC-GT-GCATA--TCTAACTACCCTTTACTGTTTT--ACACATGCA--T---A-GA-ATAAGGAcacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : a--CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : AATGAACTAAAAAATTTC-AACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 11 1 11 11 1 1 1 11 1 1 11 77777777777777777777777777 1 1 1 1 1 11 1 1 1 1 1 11 1 11 1 1 1 1 11 1 11 222 1 1 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 11 222 11 222222 1 11 22 111 1111111 3333333333 222 222 22222222 11111 22222 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333 11111 111
lowQualScore : 5 5 5 5 111 88 5 66 77 5 5 5 77 5 5 88 66666666666666666666666666 5 1 5 5 5 22 1 5 66 5 5 5 5 5 88 5 88 5 5 5 5 22 88 5 88 111 5 5 5 5 1 5 5 5 88 5 5 5 1 5 5 5 5 5 5 5 1 1 5 88 111 0 3 22 111111 0 3 7 33 3 8 8 8 9 00 888 111 1 8 2222222 0 1111111111 8 99 6 33 1 3 222 77 77 77 5 77 000 5 5 0 66 55555555 77 99999 888 1 0 0 77777 222 5 1 1 1 8 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333 88888 1 6 5 77 333 66 0 1 4
lowQualScore : . . . . ... .. . .. .. . . . .. . . .. .......................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . .. ... . . .. ...... . . . .. . . . . . .. ... ... . . ....... . .......... . .. . .. . . ... .. .. .. . .. ... . . . .. ........ .. ..... ... . . . ..... ... . . . . . . ................................................................................ .......... ..... . . . .. ... .. . . .
lowQualScore : 5 5 0 5 000 00 5 55 55 5 5 5 55 5 0 55 55555555555555555555555555 5 0 5 5 0 00 0 5 55 0 5 0 5 5 55 0 00 5 5 5 5 00 55 0 55 555 5 5 5 5 0 5 5 5 00 5 0 0 0 0 5 5 0 0 5 5 0 0 5 33 888 2 0 55 555555 0 2 0 88 2 0 0 0 3 22 333 666 0 0 2222222 8 6666666666 0 22 7 55 0 2 777 77 99 99 7 99 666 0 0 1 77 00000000 99 66666 777 7 4 4 77777 666 7 0 4 0 0 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444 8888888888 44444 0 6 7 44 777 11 7 7 4
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTT-GATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCG--TTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGGACT-GTCTCATTAAGCATAA-C-ACGTGC-TATTTTCTTCCC-TTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATG-A--T-A-A-GCAATAATGAATCTAAGTCTAGA--A--TAG--GTCCTTATTCCAATATGC---TGAAGGTCAACGAACTCA--A-ATGT-TTAA-AACTTGCCTACACCATGTTTTT-CGTTGCCGCTA-----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---AT---CGTAA-AGCAAGAGTGAACTAAAAA-TGTCTTACTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : AGAATGAACTTAAAA-TTTC-GACTT-ATTTT--CTT-CATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATA-A--T-CTA-GC-ACAATAAATT-AAGTCT-G---A--TAG--AACCTTGTTCTTATA-GA---TAAA-AAATACGAACTC------TGTATAAA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : aCATA--TCTAACTGCCC--------TTT--ACACAGG-ATTT-A-A--C-ATAATGAATTT-AGCCT-G---A--TGT--GTCCTTATTTCAACAT-C---TGCA-GTCGATGAACTC---GTATG--TCAA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaA--TAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTGattttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAA-CGAGCCTA-CTGCAG--ACCACGT-GACT-ATCTAATTA---GC-A-T-AC-TGC-c
gi|16 : CT--CCC-AGCAATTCTTGGATCTT--T-GTATA--TCTAACTACTCTTTAgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCC-A-GTGTTG--ACCAGGT-GACT-GTCTCATTAGC-AT-AAC-ACGTGC-TATTTTC--CCTTA--AATTATTGGGTAT--GT-CCATA--TCTTACTAACCTTTAGTGTTTC--ACACATG-A--T-A-ATGC-ATAATGAATCTA-GTCT-GA-----TAG--GTCCTTATTCCAATATGC---TGA--GTCAACGAACTC---A-ATGT-T-AA-AACTTGCCTACACCATTGTTTTTCTTGCCGGC-A-----------G------------------GCGCAA--TA-CG--------TAC------AAATA-AAG--CAAA-----CCGAAAGT---AT---C-TAAGAGCAAGAGTGAACTAAAAA-TGTC-TACTT-AG-TC--TTTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAAC-GAG---------TT--ACCACGT-GACTTGT---AT-----AT-A-CCACGTGT-TATTTCC--CCC-AGCAATTATTGGATATC--T-TCATA--TTCAAGTACCCTTTAGTGTGTT--GCATATG-G--T-CTA-GC-ACAATGAATTTAA-TTT-GATTACTTAGTAGTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATA-ATGT-ACAATAAATAACTGACGTCATTCTTTT-CTTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GT---C-TGA-------ATTGAACTTAAAA-TTTC-GACCT-A-TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCC-AGCAAATCTTGGGTAT--GT-GCATA--CCTAGCTACCATTTAGTGCATT--ACGCAAG-A--TGA-A-GC-ATAATGAATTTAA-TC--GA--A--CAA--GTCCTTATTCCAATAT-C---TATC-GTCAAAGAACTC---G-ATGT-T-AA-TACTTACCGGCGCCATTATTTT-CTTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGTTAAATTAGT-CAA-AGTGAAACGGAGCT-AAAA-TTTC-GACC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggn-A-AC-ACAACAAATTCAGACTT-----A--TAG--CTTTTTATTCCAATATATATATGAA-A--GATAAACTC---A-GT-T-TGAA-AACTAATTGATTCCATTGTTTT-CTTTCTGACTAT----------G------------------GGTCAA-----------------C------AAAT-GATG--T--------CCGAGAAT----------TAA-ATC-AGAATGAAATTA----TTTC-AACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGTT--TTAaatgtgccagtgttataattacattaccaatgttag
gi|7 : atttATATAAGCCAAAT---CAATGCAA--GTG-------AAGTACAGTGTAGTT--T---CAAA-AC-A-CAC-CTTTTGGAAAATGAGCC-ATGGGTTT--AGTAT----AC------AATTA---AA-T-C-ACGTGCACATTTCC--C---AGTAATTCTTGGAC-CC-GT-GCATA--TCTAACTACCCTTTACTGTTTT--ACACATGCA--T---A-GA-ATAAGGAcacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : a--CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : AATGAACTAAAAAATTTC-AACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 11 1 11 11 1 1 1 11 1 1 11 77777777777777777777777777 1 1 1 1 1 11 1 1 1 1 1 11 1 11 1 1 1 1 11 1 11 222 1 1 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 11 222 11 222222 1 11 22 111 1111111 3333333333 222 222 22222222 11111 22222 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 3333333333 11111 111
lowQualScore : 5 5 5 5 111 88 5 66 77 5 5 5 77 5 5 88 66666666666666666666666666 5 1 5 5 5 22 1 5 66 5 5 5 5 5 88 5 88 5 5 5 5 22 88 5 88 111 5 5 5 5 1 5 5 5 88 5 5 5 1 5 5 5 5 5 5 5 1 1 5 88 111 0 3 22 111111 0 3 7 33 3 8 8 8 9 00 888 111 1 8 2222222 0 1111111111 8 99 6 33 1 3 222 77 77 77 5 77 000 5 5 0 66 55555555 77 99999 888 1 0 0 77777 222 5 1 1 1 8 6 88888888888888888888888888888888888888888888888888888888888888888888888888888888 3333333333 88888 1 6 5 77 333 66 0 1 4
lowQualScore : . . . . ... .. . .. .. . . . .. . . .. .......................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . .. ... . . .. ...... . . . .. . . . . . .. ... ... . . ....... . .......... . .. . .. . . ... .. .. .. . .. ... . . . .. ........ .. ..... ... . . . ..... ... . . . . . . ................................................................................ .......... ..... . . . .. ... .. . . .
lowQualScore : 5 5 0 5 000 00 5 55 55 5 5 5 55 5 0 55 55555555555555555555555555 5 0 5 5 0 00 0 5 55 0 5 0 5 5 55 0 00 5 5 5 5 00 55 0 55 555 5 5 5 5 0 5 5 5 00 5 0 0 0 0 5 5 0 0 5 5 0 0 5 33 888 2 0 55 555555 0 2 0 88 2 0 0 0 3 22 333 666 0 0 2222222 8 6666666666 0 22 7 55 0 2 777 77 99 99 7 99 666 0 0 1 77 00000000 99 66666 777 7 4 4 77777 666 7 0 4 0 0 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444 8888888888 44444 0 6 7 44 777 11 7 7 4
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTT-GATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCG--TTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGTCCAGTGAAAAAGTGTTTTTAAAAG-ACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGGACT-GTCTCATTAAGCATAA-C-ACGTGC-TATTTTCTTCCC-TTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATG-A--T-A-A-GCAATAATGAATCTAAGTCTAGA--A--TAG--GTCCTTATTCCAATATGC---TGAAGGTCAACGAACTCA--A-ATGT-TTAA-AACTTGCCTACACCATGTTTTT-CGTTGCCGCTA-----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGT---AT---CGTAA-AGCAAGAGTGAACTAAAAA-TGTCTTACTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : AGAATGAACTTAAAA-TTTC-GACTT-ATTTT--CTT-CATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATA-A--T-CTA-GC-ACAATAAATT-AAGTCT-G---A--TAG--AACCTTGTTCTTATA-GA---TAAA-AAATACGAACTC------TGTATAAA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : aCATA--TCTAACTGCCC--------TTT--ACACAGG-ATTT-A-A--C-ATAATGAATTT-AGCCT-G---A--TGT--GTCCTTATTTCAACAT-C---TGCA-GTCGATGAACTC---GTATG--TCAA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaA--TAAATG--------AAAAGT---TTCAAAAT-ACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTGattttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAA-CGAGCCTA-CTGCAG--ACCACGT-GACT-ATCTAATTA---GC-A-T-AC-TGC-c
gi|16 : CT--CCC-AGCAATTCTTGGATCTT--T-GTATA--TCTAACTACTCTTTAgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAAAA-GTGTTTT-AAAAG-ACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAAC-GAGCC-A-GTGTTG--ACCAGGT-GACT-GTCTCATTAGC-AT-AAC-ACGTGC-TATTTTC--CCTTA--AATTATTGGGTAT--GT-CCATA--TCTTACTAACCTTTAGTGTTTC--ACACATG-A--T-A-ATGC-ATAATGAATCTA-GTCT-GA-----TAG--GTCCTTATTCCAATATGC---TGA--GTCAACGAACTC---A-ATGT-T-AA-AACTTGCCTACACCATTGTTTTTCTTGCCGGC-A-----------G------------------GCGCAA--TA-CG--------TAC------AAATA-AAG--CAAA-----CCGAAAGT---AT---C-TAAGAGCAAGAGTGAACTAAAAA-TGTC-TACTT-AG-TC--TTTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAAC-GAG---------TT--ACCACGT-GACTTGT---AT-----AT-A-CCACGTGT-TATTTCC--CCC-AGCAATTATTGGATATC--T-TCATA--TTCAAGTACCCTTTAGTGTGTT--GCATATG-G--T-CTA-GC-ACAATGAATTTAA-TTT-GATTACTTAGTAGTAATTATTTCAATAT-C---TGCA-GTTGATGAACTCCATA-ATGT-ACAATAAATAACTGACGTCATTCTTTT-CTTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACAT---GT---C-TGA-------ATTGAACTTAAAA-TTTC-GACCT-A-TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCC-AGCAAATCTTGGGTAT--GT-GCATA--CCTAGCTACCATTTAGTGCATT--ACGCAAG-A--TGA-A-GC-ATAATGAATTTAA-TC--GA--A--CAA--GTCCTTATTCCAATAT-C---TATC-GTCAAAGAACTC---G-ATGT-T-AA-TACTTACCGGCGCCATTATTTT-CTTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGTTAAATTAGT-CAA-AGTGAAACGGAGCT-AAAA-TTTC-GACC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggn-A-AC-ACAACAAATTCAGACTT-----A--TAG--CTTTTTATTCCAATATATATATGAA-A--GATAAACTC---A-GT-T-TGAA-AACTAATTGATTCCATTGTTTT-CTTTCTGACTAT----------G------------------GGTCAA-----------------C------AAAT-GATG--T--------CCGAGAAT----------TAA-ATC-AGAATGAAATTA----TTTC-AACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGTT--TTAaatgtgccagtgttataattacattaccaatgttag
gi|7 : atttATATAAGCCAAAT---CAATGCAA--GTG-------AAGTACAGTGTAGTT--T---CAAA-AC-A-CAC-CTTTTGGAAAATGAGCC-ATGGGTTT--AGTAT----AC------AATTA---AA-T-C-ACGTGCACATTTCC--C---AGTAATTCTTGGAC-CC-GT-GCATA--TCTAACTACCCTTTACTGTTTT--ACACATGCA--T---A-GA-ATAAGGAcacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : a--CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : AATGAACTAAAAAATTTC-AACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga
blockSeqs : . . . T . . . T . A . . . . G . TC . A . . . TA T . A . . . . . . G . . . . . GC . . TT . . . . . A . A . . . G . A G T . . C . . T T . GC GT A AA GTTTT T T A CT T T T C T AT TA G C . TATCTA GCATAAC A . T GC C C CG G . . C TT CT T . AG GATTACT TA ATATA AA A CATA ATA T A A G T C CATGTGTCAGTGGCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA TAAATTAGT GAGCA A T A G AT . T .
blockSeqs : . G C A TTC . T G . T . . . C C AT G G . TGTCTC ATACC . . . GC A A T C . . . . CT . . AG GAA . GA CA T GT TC . T G C . C CGTGTGCATGAGGAAGGCGCGCGCAATACATGCATTAGACAAAGATGT ATC AGTG G A . T AG . G .
blockSeqs : . . . G . . . . . . . . G C A T C . TTGT GCAT . . . GC A A G T . . . . GA . . GA GA . GC CA T A AC . G G A . T GGCGCAATACGTACAAATAAAGCAAA GTC ATC T T . G AA . G .
blockSeqs : . . . . C A T T . A AATC . . . GT C A C G . . . . A . . G GA . C TC T G TG . G T G . . TGGGTCAACAAATGATGT . . C T . G A . T .
blockSeqs : . C . . . . C . G G . . . . A . . A GA . C AA T A T . G A A . A G . G .
blockSeqs : . . . . . . . A A . C A . . T . A . . A G . T .
blockSeqs : . . . T .
blockSeqs : . T .
blockSeqCons : C* A** N** GATC****** ** N** G* ** ** NT* GA****** C**** NA* G**** GTC******* AC*** G* AG* **
originalCons : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTT--ACCANGT-GACT-GTCTNATTA---AT-A-C-ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATC-GT-NCATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--T-A-A-GC-ATAATGAATTTAAGTCT-GA--A--TAG--GTCCTTATTCCAATATGC---TGAA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGT---AT---C-TAA-AGCGAGANTGAACTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
finalCons : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAA--TAAATGT-CAGTGAAAAAGTGTTTTCAAAAG-ACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAAC-GAGCCA--GTGTTN--ACCANGT-GACT-GTCTNATTAGATC------ACGTGC-TATTTCC--CCC-AGCAATTNTTGGGTATN--TG-CATA--TCTAACTACCCTTTAGTGTTTT--ACACATG-A--TNT-A-GC-ATAATGAATTTAAGTCTGA------TAG--GTCCTTATTCCAATATC----TGNA-GTCGACGAACTCG----ATGT-TNAA-AACTTACCGACGCCATTNTTTT-CTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGTGTC-------TAAAC---AGANTGAACTNAAAA-TTTCG-ACCTAG-TTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 1 1 222 11 1 11 11 1 1 1 11 1 1 11 77777777777777777777777777 1 1 1 1 1 11 1 1 1 1 1 11 1 11 1 1 1 1 11 1 11 222 1 1 1 1 1 1 1 11 1 1 1 1 1 1 1 1 1 1 1 222 111 11 11 11 111111 111 11111 3333333 1 1 111 11111 1 11111111 22222 111 00000000000000000000000000000000000000000000000000000000000000000000000000000000 44444444444444444 111111 111
lowQualScore : 5 5 5 5 111 88 5 66 77 5 5 5 77 5 5 88 66666666666666666666666666 5 1 5 5 5 22 1 5 66 5 5 5 5 5 88 5 88 5 5 5 5 22 88 5 88 111 5 5 5 5 1 5 5 5 88 5 5 5 1 5 5 5 5 5 5 5 1 1 5 66 111 999 33 3 2 33 6 2 55 777777 4 8 666 00000 6 888 99 1 1 8 99 11 3333333 0 0 99 1 33 1 1 000 77 0 1 77 44 5 99 77 44444 77 1 33333333 1 0 0 77777 222 5 1 1 99 3 88888888888888888888888888888888888888888888888888888888888888888888888888888888 99999999999999999 1 666666 6 5 77 333 66 0 1 4
lowQualScore : . . . . ... .. . .. .. . . . .. . . .. .......................... . . . . . .. . . .. . . . . . .. . .. . . . . .. .. . .. ... . . . . . . . . .. . . . . . . . . . . . . . . .. ... ... .. . . .. . . .. ...... . . ... ..... . ... .. . . . .. .. ....... . . .. . .. . . ... .. . . .. .. . .. .. ..... .. . ........ . . . ..... ... . . . .. . ................................................................................ ................. . ...... . . .. ... .. . . .
lowQualScore : 5 5 0 5 000 00 5 55 55 5 5 5 55 5 0 55 55555555555555555555555555 5 0 5 5 0 00 0 5 55 0 5 0 5 5 55 0 00 5 5 5 5 00 55 0 55 555 5 5 5 5 0 5 5 5 00 5 0 0 0 0 5 5 0 0 5 5 0 0 5 00 555 555 88 2 5 88 5 5 88 222222 2 0 888 88888 7 333 22 0 0 0 00 88 6666666 0 0 22 0 55 0 0 000 99 7 6 99 66 0 33 99 33333 99 4 44444444 7 4 4 77777 666 7 0 4 00 2 44444444444444444444444444444444444444444444444444444444444444444444444444444444 33333333333333333 0 444444 6 7 44 777 11 7 7 4
consensus : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAANNCATATAATAAATGT-CAGTGAA--AAAGTGT--TTTCAAAANACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAA-CGAGCC-A-GTG--TTGACCANGT-GACTGTCTAATTAG--ATAACACGTGC-TA-TTTCC--CCCAGCAATTNTTGGGTATNTG---CATA--TCTAACTACCCTTTAGTGTTTT--ACACATGATNTAGC-ATAATGAATTTAAGTCT--GA-----TAG--GTCCTTATTCCAATAT-CT----GNA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATT-NTTTTCTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGTATC-TA--AA-----C-AGAGTGAA------CTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
Reference ( family-2462 ) : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAATAATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAANATACGGCGATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAAATGTTCAAGCGAAATATACCGGACTAATCAATGGACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATANAAAGATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTANNAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTNAAATTTGATTTTGACTTCNTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTTGGATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAANNCTATAGAATCACGGGTGTTTCGTTTTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGNCCCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGGAAAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTCCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTCGGTAGACTTAGATTCTCNAAGGTACATGTACATATATTCCTATTTTTATGATAGATTTTTAATGGAAGATAGAATACCATAATATTTTGTAAAATGATAATGAAANTAAAATCAATAAAANTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAATAAATGT-CAGTGAA--AAAGTGT--TTTCAAAAGACAGTCCAATC--TTTGCAAA-AC-A-AATTCTTCCCGAAA-CGAGCC-A-GTG--TTNACCANGT-GACTGTCTNATTAG--AT--CACGTGC-TA-TTTCC--CCCAGCAATTNTTGGGTATNTG---CATA--TCTAACTACCCTTTAGTGTTTT--ACACATGATNTAGC-ATAATGAATTTAAGTCT--GA-----TAG--GTCCTTATTCCAATAT-CT----GNA-GTCGACGAACTC---G-ATGT-TNAA-AACTTACCGACGCCATT-NTTTTCTTTCCGGCCAC----------G------------------GCGCAA--TAACG--------TAC------AAATAGAAG--CAAA-----CCGAAAGTGTC-TA--AA-----C-AGANTGAA------CTNAAAA-TTTC-GACCT-AGTTC--CTTTCATCCGGGATGAAATCAAATAGTTTACGTTGCACAAGTT-ATTAT
gi|1 : ACATTCCTTTCCAACAACAAATTAAAATGTCTACGATGGAGAAAACCGTTAA-AATTCTTTGTTTCTCATTCTACTCCTCTTTTAAACAGCGAAGGATTTAAACTGATGGAAGGGAAATTCTGCAAAATACGGCGATCTCAGTGATCCAAGAAGACCACAAA-GCTTTCAGAAAATGTTCAAGCGAAATATACCGAACTAATCAATG-ACAGACGCATTTGAAAATAAAAAAAACAATTTTTAAAAATTCCCTTTAGTTTGGAGGCAAACACCAGCGGCGAACAAAAGTGATCGTGCTATTATATAAAAATTACTGGATATCGTTAATGGTATGTGTTCTTTCCCGCGTAATAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTAAAATTTGATTTTGACTTCCTATTGTTTGATTTTAAGGACTGCTAGCAAGTTTTTGCAAAATGGGAATCAGAGAAACAGAAATAAACGACTGATTGACGTCATTAAATTGTGTTT-GATGCAATGTGGAGGTTAACTTTCTTTTTTATTCAGAAATTTAATAGCTAAACAAGATTTTTTCAATGCTATAAAATCACGGGTGTTTCG--TTTTCAGATGGTAAATCCAGCAGGAATGTTATCACAGCTCAACTTTGAACAAAGCTCAATGAAATTCATTAGAAGCGTTGCTCCAGAACTAGTGCCTCACGTTCAACGTGTAAGTGCCATGTTTAAAGCTTTCATTGGG-AAAATTAGTCAGAGCTTTAGTAGCCTGAAATACTATTCACTAAAGTTCTTAATAGTCTTTCTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCA-TGCTCGGTAGACTTAGATTCTCCAA-GTACATGTACATATATTCCTA-TTTTATGATAGATTTTTAATGGAAGATAGAATA-CATAATATTTTGTAAAATGATAATGAAAATAAAATCAATAAAAGTGTGTCATACAAATAATCTACGGTCATAGAATACTAAATATGTAAATTTTTGCGCTTTATAAACTGATAAATAATATAATATATATAATAAATGTCCAGTGAA--AAAGTGT--TTTTAAAAGACAGTCCAATC--TTTGTAAA-AC-A-AATTCTTCCCGAAACCGAGCC-A-GTGTTTTGACCAGGTGGACTGTCTCATTAAGCATAACACGTGC-TA-TTTTCTTCCCTTAAATTATTGGGTATCAGTCCCATAATTCTTACTAACCTTTAGTGTTTTTCACACATGATA-AGCAATAATGAATCTAAGTCTAGAA-----TAG--GTCCTTATTCCAATATGCT----GAAGGTCAACGAACTCA--A-ATGT-TTAA-AACTTGCCTACACCATG-TTTTTCGTTGCCGCTA-----------G------------------GCGCAA--TAACG--------TAC------AAATAAAAG--CAAA-----CCGAAAGTATCGTA--AAG----CAAGAGTGAA------CTAAAAA-TGTCTTACTTAAGTCCCGCTTTCAGTTGGGATCAAATCAAATAGTTTAAGTTGTATAAGGTAATTAT
gi|10 : -AGAATGAA------CTTAAAA-TTTC-GACTT-ATTTT--CTT-CATCCAAGATGAAATCAAATAACTTTCAGTGCATAAGTT-
gi|11 : ACCATTTAGTGTTCT--ACAAATAATCTAGC-ACAATAAA-TTAAGTCT--GA-----TAG--AACCTTGTTCTTATAG-AT----AAA-AAATACGAACTC------TGTATAAA-AACTTACCAACcatgtataacaccatcgccaatacattgaccatgtaaa
gi|12 : a---CATA--TCTAACTGCCCTTTA----------CACAGGATTTAAC-ATAATGAATTTA-GCCT--GA-----TGT--GTCCTTATTTCAACAT-CT----GCA-GTCGATGAACTC---GTATG--TCAA-AATTTAatc
gi|13 : C--TTTTCATCTGGGATGAAATCAAATAGTTTACGTTGAACAAGGT-ATTAT
gi|14 : gaacttaaaaATAAATG--------A--AAAGT-----TTCAAAATACAA-CCAATCCTTTTGCACATATTA-AATTCTTCCTGAAA-CGAGCC-A-GTG--attttactgttatagatacattaactatgttagcttttgg
gi|15 : gatTTCTTTC-GAAA-CGAGCCTA-CTG--CAGACCACGT-GACTATCTAATTAG--c
gi|16 : CT--CCCAGCAATTCTTGGATCTTTG---TATA--TCTAACTACTCTTTAcatactgcgcgttac
gi|2 : ACATTCCTTTCCA-CA-CAAATTAAAATGTCTACGATGGAGAAAAC-GTTAATAATTCTTTGTT---CATTCTACTCCTCTTTTAAACAGC--AGGATTTAAACTGATGGAAGGGAA-TTCTGCAAT-TACGG--ATCTCAGTGATCCAAGAAGACCACAAAAGCTTTCAGAAA-TGTTCA-GCGAAATATAC--GAC-AATCAATGGACAGACGCATTTGA--ATA---------------------TC---TTAGTTTGGAGGCAAACACCAGCGGCGA-CAAAAGTGATCGTGCTATTATAAAAAGATTACTGGATATCGTTA-TGGTATGTGT-CTTTCC-GCGTATAAAAAACTTATTTGTAATGCTTGGAAATCAAGCTATGCGTGTATTTTAAATTTGATTT-GACTTCA-ATTGTTTGATTTTAAGGACTGCTA-CAAGTTTT-GCAAAATGG-AATCAGAGAAACAGAA-TAAACGACTGAT-GACGTCATTA--TTGTGTTTGGATG--ATGTGGAGGT-AACTTTCTTTTT-ATTCAGAA-TTTAATAGCTAAACAAGATTTTT-CAAGCCTATAG--TCACGG-TGTTTCGTTTTTTCAGATGG---ATCC-GCAGGAATGTTATCACAGCTCA-CTTTGA-CAAAGCTCAATGAA-TTCATTAGAAGCGTTGCTCCAGAACTAGTGACCCACGTTCAACGTGTAAGTGCCATGTTTAAAGC-TTCATTGGGAAAAATTAGTCAGAGC-TTAGTAGCCTGAAATACTATT--CTAAAGTTC-TAATAGTCTTCTTAAGCTGTAAATGATAATTCTAATTCTACTAGCCTTCAGTGCTC-GTAGACTTAGATTCTCAAAGGTACATGTACATATATTCCTATTTTTATGATAGA-TTTTAAT-GAAGATAGAATACCATAATATTTTGT-AAATGA-AATGAAATTAAAATCAATAAAATTGTG-CAT
gi|3 : aAATGT-CAGTGAA--AA-GTGT--TTT-AAAAGACAGTCCA-TC--TTTGTAAA-AC-A-AATTCTTCCCGAAA-CGAGCC-A-GTG--TTGACCAGGT-GACTGTCTCATTAGC-ATAACACGTGC-TATTTTCC--CTTA--AATTATTGGGTATGTC---CATA--TCTTACTAACCTTTAGTGTTTC--ACACATGATAATGC-ATAATGAATCT-AGTCT--GA-----TAG--GTCCTTATTCCAATATGCT----G-A-GTCAACGAACTC---A-ATGT-T-AA-AACTTGCCTACACCATTGTTTTTCTTGCCGG-CA-----------G------------------GCGCAA--T-ACG--------TAC------AAATA-AAG--CAAA-----CCGAAAGTATC-TAAGAG-----CAAGAGTGAA------CTAAAAA-TGTC-TACTT-AG-TC--TTTTCATTTGGGATCAAATCAAATAGTTTAAGTTGTACAAGGT-ATTAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaat
gi|4 : AAA-AC-ACAATTC-----GAAA-CGAG-----------TTACCACGT-GACT-TGTA--TAT--AC--CACGTGT-TA-TTTCC--CCCAGCAATTATTGGATATCTT---CATA--TTCAAGTACCCTTTAGTGTGTT--GCATATGGTCTAGC-ACAATGAATTTAA-TTT--GATTACTTAGTAGTAATTATTTCAATAT-CT----GCA-GTTGATGAACTCCATA-ATGT-ACAATAAATAACTGACGTCATT-CTTTTCTTTCCGACCACATGTGTCAGTG------------------GCGCAAATTAACGCCAATGCATACATTGTAAAATACAAGACCAA-------CGAACATGTC-TG--A----------ATTGAA------CTTAAAA-TTTC-GACCT-A-TTC--CTTTCATCCAGGATGAAATCAAATAGTTTACTTTGCGCAAGTT-ATT
gi|5 : caaacagaaattgtgagaaC--TCCAGCAAATCTTGGGTATGTG---CATA--CCTAGCTACCATTTAGTGCATT--ACGCAAGATGAAGC-ATAATGAATTTAA-TCG--AA-----CAA--GTCCTTATTCCAATAT-CT----ATC-GTCAAAGAACTC---G-ATGT-T-AA-TACTTACCGGCGCCATT-ATTTTCTTTCCGGTCAC----------GTGTGCATGAGGAAGGCGCGCGCAA--T-ACA--------TGC-------ATTAGA----CAAAGATGTCCGAGAGT----TA--AATTAGTC-AAAGTGAAACGGAGCT-AAAA-TTTC-GACC--AATTC--CTTTCATCTGAGATGAAATAAGACAGTGTACGTTGCACTAGGT-ATTAT
gi|6 : tggnATTTAAC-ACAACAAATTCA-GACT--TA-----TAG--CTTTTTATTCCAATAT-ATATATGAA-A--GATAAACTC---A-GT-T-TGAA-AACTAATTGATTCCATT-GTTTTCTTTCTGACTAT----------G------------------GGTCAA-----------------C------AAAT-GATG--T--------CCGAGAAT----TA--AAT----C-AGAATGAA------ATTA----TTTC-AACCT--GTTC--CTTTTGCCTATGATGAAATCGGAAAGTTTACATTGCATAAGTT--TTAaatgtgccagtgttataattacattaccaatgttag
gi|7 : AATATAAGCCA---AATCAATGC-AAGTGAAGTACAGTGTAGTTTCAAAACACA--CC---T--TTTGGAAA-AT-------------------GAGCC-ATGGG--TTTAGTAT----AC-----AATTAA--AT--CACGTGCACA-TTTCC--C--AGTAATTCTTGGACCCGTG---CATA--TCTAACTACCCTTTACTGTTTT--ACACATG-CATAGA-ATAAGGAcacatcattaaaattatgatgacgttattggtttagaaacaaaacaatattacatatgtt
gi|8 : --CTTTCATTCGGGATGAAATGAAATATTTTGCGCTGCACGAGTT-ATCAtgttcgcgataagattcca
gi|9 : A-----C-ATAATGAA------CTAAAAAATTTC-AACCT--GTCC--CTTTCATCTGGGATGAAATCCAATAGTTTACATTCCAGAAGTC-ATTAcataacacctttgtgaatctttaaacaaacaatgttaatttgagaaaaaatgtattcgaatgaatgtgccttttaaagaaatgtgttttcgaaattttgaatagcagttgga