lowQualScore : 33333 2222 222222222 11111 11111 222222 333333 1 44444444444444444 4444444 2222 2 111 33333333333 7777777777777 111111 11 1 1 88888888888888 33333333 1 1 1 11 111 1 22 1 22 22222222222 11 1 1 1 1 22 222 11 222 555555555 11 2 66666666666 1
lowQualScore : 33333 8888 666666666 22222 77 5 77 99 99 6 99 4 6 66666 333333 0 666666 8 0 0 8 8 5 99999999999999999 99 5 0 2 8 0000000 1 1111 6 6 99 3 6 3 6 222 3 6 11111111111 6 3333333333333 3 4 999999 55 6 22 5 7 6 6 1 3 66666666666666 0 33333333 0 6 0 0 0 6 3 66 0 999 7 2 11 0 2 11 44444444444 1 4 66 0 6 0 0 3 3 6 00 44 6 777 88 444 333333333 6 9 88 8 2 3 4 33333333333 6 5 2
lowQualScore : ..... .... ......... ..... .. . .. .. .. . .. . . ..... ...... . ...... . . . . . . ................. .. . . . . ....... . .... . . .. . . . . ... . . ........... . ............. . . ...... .. . .. . . . . . . .............. . ........ . . . . . . . .. . ... . . .. . . .. ........... . . .. . . . . . . . .. .. . ... .. ... ......... . . .. . . . . ........... . . .
lowQualScore : 33333 3333 777777777 44444 99 7 99 22 22 7 22 0 7 77777 000000 8 888888 0 8 6 0 0 6 00000000000000000 88 2 8 8 0 4444444 0 8888 7 0 22 5 7 5 7 000 2 7 77777777777 7 3333333333333 5 7 222222 55 7 00 0 3 0 0 0 3 00000000000000 7 33333333 7 7 7 0 0 0 3 33 7 000 3 3 00 0 5 00 00000000000 4 2 00 0 0 8 0 2 3 0 00 77 0 777 33 333 777777777 0 0 00 5 5 0 0 33333333333 0 0 5
consensus : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTCTA----ACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGACC-AAAATCTATG--------T--------GCT-GTAGGCTAGATCTATTTACTAAATCAATA-TAC-TGTATTTACGATGATTC-ATAAATCAAA-TAACCCCC-GGAAGTCT--ATTGA-CATATAAAA-AC--CTGTACCACTGGTACAGCCCAAATGACCCT-GAC-----------ACTTGG-TC-------------AATAGNCGTACCTCT------GGTCCTATACACTTGNNACCCTTGAC-CAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATCGACCTACCCCG-TGTCCCTT--------ACCCTGCCAGTTGGCTTACCC-GTGTGTACTTAGCCTTTGGGTTTGATCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCAC-CTGTCATCGGGGTACAA--ACTTATTCAGCTTTTATTN-CCGA-GTGACAAAGTTACAGTGGCTAACC--NACGGA-CGCAACCTATATCTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTAAAGCTT-CTTGTTTTATT-ATAT-ACTT-ACTTTNCTTCGATCCGTCA-CT--TCGACTGC--GACCGCGAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATN-TAAACTACCCGNGCGACTTAGACTCGTCCAACCCCGGGGNAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCANCGAACCCGATTC
Reference ( gi|1 ) : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC-A----ACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGACC-AAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAATA-TACATGTATTTACAATGATTCTATAAATCAAA-TAACCCCCCGGAAGTCT--ATTGA-CATATAAAA-AT--CTGTACCACTGGTACAGCCCAAATGACCCT-GAC-----------ACTTGG-TC-------------AATAGTTGTACCTCT------GGTCCTATACACTTGGTACCCTTGAC-CAAACGTTGTACACTTGGCTCTGACCCCTTGTACACCTATGTCTATTGGCTTACCCCG-TGTCCCTTAAAGGTATACCCTGCCAGTTGGCTTGCCAAGTGTATACCTAGCCTTTGGGTTTGGTCAC-C-TGATCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTTTGTCACCGGGGTACAG--ACTTATTCAGTTTTTATTT-CCGA-GTGACAAAGTTACAGTTACTAACC--AACGGA-CACAACCTATATCTTGAGACTTATTCAGCCCCTT-GTGTGAATAGCT-TATTCAGCTATTCGCCAAACCCTAAAGCTT-CTTATTTTATT-ATATAACTT-CCTTTGTTCTGATCTGTCGGCT--TCGACTGT--AACCGCAAGAGTGATGCTTCC-ACCGCTTGCAACCATATT-TATACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTCCCGTGCCCGATTTCAATTCATTAGCACCAAACCCGATTC
gi|4 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC-A----ACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGACC-AAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAATA-TACATGTATTTACAATGATTCTATAAATCAAA-TAACCCCCCGGAAGTCT--ATTGA-CATATAAAA-AT--CTGTACCACTGGTACAGCCCAAATGACCCT-GAC-----------ACTTGG-TC-------------AATAGTTGTACCTCT------GGTCCTATACACTTGGTACCCTTGAC-CA
gi|3 : cacttcacgtctgctattatatgcccttgactcaatatgtcctctctcattatcaacaatacaccttggacatctttcagttatatattgcccattggctgaacttggtctgatattactcaatccaagcatgtcaccaaattgcggtccggttcgtctgtgtctctccgagtctaatctaaattgaacactattttgtggctcattaactcttaaatagtttgccaccggggtatcagaagtccatgtacttggtctctgtcctgtaactatctctgagtcatgcaaactttgtgtttgaggacgcggagtccaatgagtaatactttctgtttgtctaatactacttcataatttctttatttcgtcctgaaggacagtggtttcttgatctatgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataattacttttCTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCGTGCCGAGCGGTATAT-TT--TCT--GCGGGCAC--GTATC-TG--AATACA-CTCA-----GGATCTCTGGATT------T-ATATTCTG----ACAAATGATTGAAAAGA-AAC-GT-ACTTTACGAGTTGGAATCAATGACCCAAAATTTATG--------T--------GCTCATAG-CTAGATCTATT-ACTAAATCAATAATAC-----TTTA-GATGATTTCTTAAATCAAAATAACTCCC-GGAAGTGTCAATTGAACA-ATAAAACAT--TTAGCCAACTGGTA--GCCCAAATGACCCT-GACGCGGTCCTGACACTTTG-TC-------------AATAGCCGTACCTTT------GGTCCTATACACTTGTTGCCCTTGAC-CA
gi|9 : acttcacgtctgctcttatatatccttgactcaatatgtcctctctcattatcaacaatacgccttggacgtctttcggttatatattgcccatttggctgaacttggtccgatattactcaatccaataatgtcaccaaattgcggtccggttcctctgtttctcgccgaatctaatctaaattgaacactattctgtggctcattaactcttaaataatttgccaccggggtatcagaagtccacgtacttggcctctgtcctgtaactatccctgagtcagtcaaactctgtgcttgaggacgaggagtcgaatgaatcatactttctgtttgtctaatactactttctaatttctttatttcgtcctgaaggacagtgatttcttgatctacgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataataacttttATCACACCTTAAAGTTGCTACCAAAATGCTTTATAAGCATTTGGTTTAAACGTGCACACTCCAGCCGAGCGGTATATATTTACCTCGGCGTGACC--GTACC-TGTAAATACACCTCAGATACGGGTGCGTGGATTGTCCCATTATATTC-ATTTGACAAATGTTT
gi|5 : T---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--TCT--GCGGGTAC--GTACC-TG--AATACA-CTCA-----GGGTCTCTGGATT------TTATATTCTG----ACAAATGATTTGAAAGAGAACTGT-ACTTTAC-AGTTGGAATCAATGACC-AAA-TTTATG--------T--------GCT-CTAGGCTAGATCTATTTACTAAATCAATA-TA------TTTACGATGAT-CTTTAAATCAAA-TAACCCCC-GGAAGTCT--AT-----AAATAAAA-AC--TTGTACCACTGGTACAGCCCAAATGACCCT-GAC-----------ACTTAGTTC-------------AA-AGCCGTACATCT------GGTCCTATACACTTGTTACCCTTGAC-CAAACGTCGTACACTTGGTCCTGACCACTTGTAT-CCTATGCCTATCGACCTACCCCACTGTCCCTTA-------ACCCAGCCAGTTGGCTTACCA---GTGTACCTAGCCTTTGG--TTGGTCACACATGGTCCACCGCGACCAGAGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCAC-TTGTCATCGGGGTACAGAAACTTATTCAG-TTTTATTTGCCGAGGTGATAAAGTTACAGTGGCTAACC--TACAGACCGCAACCTATATCTTGAGACTTTTTCAGCCCCTTAATGTGAATAGCTGTATTCAGCTATTCACCAAACCCTAGAGCCTATTTA-TTTATT-GTAT-ACTT-ACTTTGCTTCGATGTGTCACCTGATCGACTGCGAGATCGCGAGAGTGCTGTTTTCAACAGCTTTCAGCCCTATTATA-ACTACCCGGGCGACTTAGACTCGTCCAACCCCAGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTCta
gi|2 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTGCA-CTCA-----GGATCTCTGGATT------TTATATTCTA----GCAACTGATTAAAAAGG-AACTGTTACTTTAC-AGTTTGAATCAATTACC-AAAATCTATG--------TATTTATGTGCT-GTAGGCTAGATCTAATTACTAAATCAATA-T-----------CAG-------ATAAATCAAA-TAACCCCC-GGAAGTCT--ACTGA-CATATAAAA-AAAACTGTACCACTGGTGCAGCCCAAATGACCCT-GAC-----------AGTTGG-TCCTGACACTTTGTCAATAGATGTACCTCT------GGTCTTATACACTTGGGGCCCTTAAC-CAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCTCTTCAACTTATACTCTGCCATTTGGCTTACCCAGTGTG--CTTAGCCCTTGGGTTTGATCAC-C-TGGTTCACCGCGACCA-AGAAGTCTCTTGTCCGTAGGTGTTTCCAGTTCACGCTGTCACCGGGGTACAA--ACTT-CCCAGTTTTTATTG-TCGA-GTGACAAAGTTACAGTGGTTAACC----------------TATAACTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTACAGCTT-CTTGTTTTATTAATATTACTTACTTTTCTTTTGATCCGACAACT--TCGACTGC--AACCGCAAGTGTGATG------A----TTGCAGCCGTATC-TAAACTACCCGTGCGACTTAAATTCGTCCAACCCAGGGGAAGTCAGGTCATTCCAATATCAAATAGACTTCCGTAACCGATTTTAACTCATTAA-AGCAAACCCGATTC
gi|13 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GC-GGTACCGGTACCATG--ATTACA-CTCA-----Gattacattctgtatca
gi|17 : T---AACGTGAAC--CCCAGCCGAGCGGTATAT-TT--
gi|6 : TATTCCA----ACAAATGATTAGAAAGC-AACTGTTACTTTAC-AGTTTGAATCAATTACC-AAACTCCATGAATTCATAT--------GCT-GTAGGATATATCTATTTACTAAATCAATA-TACGTGTATTTACGATGAT---------------AACCCCCTGGAAGTCT--ATTGA-CATA--AAA-AC--CTGTATCACTGGTAC---CCAAATGACCCCCAAT-----------ACCTGG-TC-------------AAAAGATGTACCTCTAGATCTGGTCATGTACACTCGTGACCCTTAAAACAAACGTTGTACACTTGGTCCTGACCACTAATACACCTATGCCTACTGACTTACCTCG-TG---------------CCCTGCCAGTTGGCTAGCCCCGTG--TACTTGGCCTTTGGGTTTGATCAC-C-T
gi|8 : ATAATCAATCAATAAATCAAA-TAACCCCC-GGAAGTCT--ACAGA-CATATAAAA-AC--CTGTACCACTGGTACAGCTCAAATAACCAT-GAC-----------ACTTGG-TCCTGACATTTTGTCAATAGTTGTACCTCA------GGTACTATACACTTGGGA-ACTTG-T-CAATAGTTGTACCTCTGGTCCT
gi|7 : gcaataa-C-TGGTCCACCGCGACCA-AGAGGTGTTTTGTTCGTAGGTGTTTCCAGTTCACTCTATCATCGGGATACAA--ACTTATTCAGCATTTATTA-CCGA-GTGACAGAGTTG-----GCTAACC--AGAGGA-CGCAACCTATAACCCAAGATTTAGTCAGTCCCTT-ATTTGAACAGCT-TATTCAGCTACTCACCAAACCCTAAATATT-CTTGTTATATa
gi|12 : A-GTGACAAAGTTACAGTGGCTAACCTGAACGGA-CGCAACCTATATCTTTAGACTTATTCAGACCCTT-ATGAGAATAGCT-TATTCAGATATTCACCAAACCCTa
gi|16 : CTAACT--TACAGA-CGCAACCTATATCTTGAGACTTATT
gi|11 : CCAAACCCTAAAGCTT-CTTATTTTATT-ATACAACTT-ACTTTACTTTGATCTGT---CT--TCAACTGC--AACCGCAAGATTGATGTTTTC-GCAGCTTGCAGCCGTATA-TA
gi|15 : -----------TCAAATAGACTTCCTTGCCCGATTTCAATTC
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): CTTAAATAATTTGCCACTGGGGTATCAGAATTCCACGTACTTGGTCTCTGTCCTACAACTATCCCTGAGTCAGGCAACTTTTGTGCTTGGGGACGCGGAGTCGAATGAAT
Unaligned ( gi|14 ): GACGTAAAGCAATAAATAATCAATCAACCGATCAATAGCTCTC
Alignments
lowQualScore : 22222 2222 222222222 11111 111111 1111 33333333333333333 2222 2222222 22222222222 3333333333333 3333333333333 111111 1 7777777777 4444 1 3 11 1 1 111 1 11111 1 3333333 111 1111 1 1 44444444444
lowQualScore : 55555 1111 222222222 888 66 5 66 77 77 5 77 1 5 44444 999999 7777 6 7 6 6 99999999999999999 88 3 6 3 9999 2 4444444 5 5 5 5 77 1 5 5 77 5 5 00 5 77777777777 1111111111111 1111111111111 5 1 22 666666 22 5 3 2 0 3 0 9999999999 4444 2 8 8 0 0 33 3 0 0 1 8 0 222 6 2 8 8 1 0 55555 1 0 2 2 5555555 555 2 7 0 0000 0 0 0 1 6 1 77777777777 6 1 0
lowQualScore : ..... .... ......... ... .. . .. .. .. . .. . . ..... ...... .... . . . . ................. .. . . . .... . ....... . . . . .. . . . .. . . .. . ........... ............. ............. . . .. ...... .. . . . . . . .......... .... . . . . . .. . . . . . . ... . . . . . . ..... . . . . ....... ... . . . .... . . . . . . ........... . . .
lowQualScore : 00000 2222 999999999 888 99 0 99 99 99 7 99 0 7 33333 222222 1111 7 3 7 7 33333333333333333 88 5 7 2 0000 5 6666666 7 7 7 7 99 7 7 1 99 7 7 99 7 11111111111 4444444444444 4444444444444 7 7 44 444444 00 7 2 0 0 2 2 5555555555 5555 5 0 0 0 0 88 2 5 0 0 0 8 555 7 2 0 0 4 0 88888 0 0 0 0 5555555 888 0 0 8 2222 2 8 0 0 7 0 55555555555 7 0 7
consensus : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCC-C-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA--TAT-ACCCTGCCAGTTGGCTTGCC-CGCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTA-TTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGACT---TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
Reference ( family-2460 ) : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TAACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-GTAGGCTAGATCTATTTACTAAATCAAT-ATAC-TGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCC-C-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGNNACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATCGACCTACCCCG-TGTCCCT--------T-ACCCTGCCAGTTGGCTTACC-CGTGTGTACTTAGCCTTTGGGTTTGATCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCAC-CTGTCATCGGGGTAC--AAACTTATTCAGCTTTTA-TTNCCGA-GTGACAAAGTTACAGTGGCTAACCN--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTNC-TTCGATCCGTC-ACT---TCGACTGC--GACCGCGAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGNGCGACTTAGACTCGTCCAACCCCGGGGNAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCANCGAACCCGATTC
gi|1 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAA-CCCCCC-GGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGCTCTGACCCCTTGTACACCTATGTCTATTGGCTTACCCCG-TGTCCCTTAAAGGTAT-ACCCTGCCAGTTGGCTTGCCAAGTGTATACCTAGCCTTTGGGTTTGGTCAC-C-TGATCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTTTGTCACCGGGGTAC--AGACTTATTCAGTTTTTA-TTTCCGA-GTGACAAAGTTACAGTTACTAACCA--ACGGA-CACAACCTATATCTTGAGACTTATTCAGCCCCTT-GTGTGAATAGCT-TATTCAGCTATTCGCCAAACCCTAAAGCTTCTTATTTTATT-ATA-TAA-CTTCCTTTGT-TCTGATCTGTCGGCT---TCGACTGT--AACCGCAAGAGTGATGCTTCC-ACCGCTTGCAACCATATTTA-TACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTCCCGTGCCCGATTTCAATTCATTAGCACCAAACCCGATTC
gi|11 : CCAAACCCTAAAGCTTCTTATTTTATT-ATA-C-AACTTACTTTAC-TTTGATCTGTC---T---TCAACTGC--AACCGCAAGATTGATGTTTTC-GCAGCTTGCAGCCGTATATA-
gi|12 : A-GTGACAAAGTTACAGTGGCTAACCTGAACGGA-CGCAACCTATATCTTTAGACTTATTCAGACCCTT-ATGAGAATAGCT-TATTCAGATATTCACCAAACCCT
gi|13 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GC-GGTACCGGTACCATG--ATTACA-CTCA-----G
gi|15 : -----------TCAAATAGACTTCCTTGCCCGATTTCAATTC
gi|16 : CTAACTT--ACAGA-CGCAACCTATATCTTGAGACTTATTccgattcatt
gi|17 : T---AACGTGAAC--CCCAGCCGAGCGGTATAT-TT--
gi|2 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTGCA-CTCA-----GGATCTCTGGATT------TTATATTC---TAGCAACTGATTAAAAAGG-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAAATCTATG--------TATTTATGTGCT-GTAGGCTAGATCTAATTACTAAATCAAT-AT-C-AG-----------------ATAAATC-AAATAA-CCCC-C-GGAAGTCT--ACTG-ACATATAAAAAAAACTGTA-CC-ACTGGTGCAGCCCAAATGA-C-----------CCTGACAGTTGGTCCTGACACTTT-------------G-TCAATAGATGTACC------TCTGGTCTTATACACTTGGGGCCCTT-AACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCTCTTCAACTTAT-ACTCTGCCATTTGGCTTACC-CA-GTGTGCTTAGCCCTTGGGTTTGATCAC-C-TGGTTCACCGCGACCA-AGAAGTCTCTTGTCCGTAGGTGTTTCCAGTTCACGCTGTCACCGGGGTAC--AAACTT-CCCAGTTTTTA-TTGTCGA-GTGACAAAGTTACAGTGGTT----------------AACCTATAACTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTACAGCTTCTTGTTTTATTAATATT-A-CTTACTTTTCTTTTGATCCGACAACT---TCGACTGC--AACCGCAAGTGTGATG------A----TTGCAGCCGTATCTA-AACTACCCGTGCGACTTAAATTCGTCCAACCCAGGGGAAGTCAGGTCATTCCAATATCAAATAGACTTCCGTAACCGATTTTAACTCATTAA-AGCAAACCCGATTC
gi|3 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCGTGCCGAGCGGTATAT-TT--TCT--GCGGGCAC--GTATC-TG--AATACA-CTCA-----GGATCTCTGGA-T------TTATATTC---TGACAAATGATTGAAAAGA-AAC-G-TACTTTACGAGTTGGAATCAATGACCCAAAATTTATG--------T--------GCTCATA-GCTAGATCTA-TTACTAAATCAATAATAC-----TTTA-GATGATTTC-TTAAATCAAAATAA-CTCC-C-GGAAGTGTCAATTGAACA-AT-AAAAC--ATTTAGCCAACTGGT--AGCCCAAATGA-CCCTGACGCGGTCCTGAC-------------ACTTT-------------G-TCAATAGCCGTACC------TTTGGTCCTATACACTTGTTGCCCTT-GACCAattacattctgtatca
gi|4 : acttcacgtctgctcttatatatccttgactcaatatgtcctctctcattatcaacaatacgccttggacgtctttcggttatatattgcccatttggctgaacttggtccgatattactcaatccaataatgtcaccaaattgcggtccggttcctctgtttctcgccgaatctaatctaaattgaacactattctgtggctcattaactcttaaataatttgccaccggggtatcagaagtccacgtacttggcctctgtcctgtaactatccctgagtcagtcaaactctgtgcttgaggacgaggagtcgaatgaatcatactttctgtttgtctaatactactttctaatttctttatttcgtcctgaaggacagtgatttcttgatctacgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataataacttttCTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAACCCCC-C-GGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCA
gi|5 : cacttcacgtctgctattatatgcccttgactcaatatgtcctctctcattatcaacaatacaccttggacatctttcagttatatattgcccattggctgaacttggtctgatattactcaatccaagcatgtcaccaaattgcggtccggttcgtctgtgtctctccgagtctaatctaaattgaacactattttgtggctcattaactcttaaatagtttgccaccggggtatcagaagtccatgtacttggtctctgtcctgtaactatctctgagtcatgcaaactttgtgtttgaggacgcggagtccaatgagtaatactttctgtttgtctaatactacttcataatttctttatttcgtcctgaaggacagtggtttcttgatctatgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataattacttttT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--TCT--GCGGGTAC--GTACC-TG--AATACA-CTCA-----GGGTCTCTGGATT------TTATATTC---TGACAAATGATTTGAAAGAGAACTG-TACTTTAC-AGTTGGAATCAATGA-CC-AAATTTATG--------T--------GCT-CTAGGCTAGATCTATTTACTAAATCAAT-A------TATTTACGATGA-TCT-TTAAATC-AAATAA-CCCC-C-GGAAGTCT--AT-----AAATAAAAAC--TTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTA-------------GTTCAA-AGCCGTACA------TCTGGTCCTATACACTTGTTACCCTT-GACCAAACGTCGTACACTTGGTCCTGACCACTTGTAT-CCTATGCCTATCGACCTACCCCACTGTCCCT--------TAACCCAGCCAGTTGGCTTACC-A--GTGTACCTAGCCTTTGG--TTGGTCACACATGGTCCACCGCGACCAGAGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCAC-TTGTCATCGGGGTACAGAAACTTATTCAG-TTTTATTTGCCGAGGTGATAAAGTTACAGTGGCTAACCT--ACAGACCGCAACCTATATCTTGAGACTTTTTCAGCCCCTTAATGTGAATAGCTGTATTCAGCTATTCACCAAACCCTAGAGCCTATTTATTTATT-GTA-T-A-CTTACTTTGC-TTCGATGTGTC-ACCTGATCGACTGCGAGATCGCGAGAGTGCTGTTTTCAACAGCTTTCAGCCCTAT-TATAACTACCCGGGCGACTTAGACTCGTCCAACCCCAGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|6 : TATTC---CAACAAATGATTAGAAAGC-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAACTCCATGAATTCATAT--------GCT-GTAGGATATATCTATTTACTAAATCAAT-ATACGTGTATTTACGATG----------------ATAA-CCCC-CTGGAAGTCT--ATTG-AC--ATAAAAAC--CTGTA-TC-ACTGGTA---CCCAAATGACC-----------CCCAAT-------------ACCTG-------------G-TCAAAAGATGTACCTCTAGATCTGGTCATGTACACTCGTGACCCTTAAAACAAACGTTGTACACTTGGTCCTGACCACTAATACACCTATGCCTACTGACTTACCTCG-TG----------------CCCTGCCAGTTGGCTAGCC-C-CGTGTACTTGGCCTTTGGGTTTGATCAC-C-T
gi|7 : -C-TGGTCCACCGCGACCA-AGAGGTGTTTTGTTCGTAGGTGTTTCCAGTTCACTCTATCATCGGGATAC--AAACTTATTCAGCATTTA-TTACCGA-GTGACAGAGTT-----GGCTAACCA--GAGGA-CGCAACCTATAACCCAAGATTTAGTCAGTCCCTT-ATTTGAACAGCT-TATTCAGCTACTCACCAAACCCTAAATATTCTTGTTATAT
gi|8 : -ATAAATC-AAATAA-CCCC-C-GGAAGTCT--ACAG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCTCAAATAA-C-----------CATGAC-------------ACTTGGTCCTGACATTTTG-TCAATAGTTGTACC------TCAGGTACTATACACTTGGGA-ACTT-G-TCAATAGTTGTACCTCTGGTCCTa
gi|9 : gcaataaataatcaatcaATCACACCTTAAAGTTGCTACCAAAATGCTTTATAAGCATTTGGTTTAAACGTGCACACTCCAGCCGAGCGGTATATATTTACCTCGGCGTGACC--GTACC-TGTAAATACACCTCAGATACGGGTGCGTGGATTGTCCCATTATATTCATTTGACAAATGTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAAATAATTTGCCACTGGGGTATCAGAATTCCACGTACTTGGTCTCTGTCCTACAACTATCCCTGAGTCAGGCAACTTTTGTGCTTGGGGACGCGGAGTCGAATGAAT
Unaligned ( gi|14 ): GACGTAAAGCAATAAATAATCAATCAACCGATCAATAGCTCTC
Alignments
lowQualScore : 22222 2222 222222222 11111 111111 1111 33333333333333333 111 2222222 1 22222222222 3333333333333 3333333333333 111111 1 555555555 4444 1 11 111 1 11111 1 111111 11 1111 1 1 44444444444
lowQualScore : 55555 1111 222222222 888 66 5 66 77 77 5 77 1 5 44444 999999 7777 6 7 6 6 99999999999999999 6 3 6 777 2 4444444 5 5 1 77 1 5 5 77 5 5 00 5 77777777777 1111111111111 1111111111111 5 1 22 666666 22 5 3 0 3 0 666666666 4444 2 8 8 0 6 33 3 0 8 0 222 6 1 8 8 1 0 55555 0 0 888888 33 7 0 0000 0 0 0 77777777777 6 0
lowQualScore : ..... .... ......... ... .. . .. .. .. . .. . . ..... ...... .... . . . . ................. . . . ... . ....... . . . .. . . . .. . . .. . ........... ............. ............. . . .. ...... .. . . . . . ......... .... . . . . . .. . . . . ... . . . . . . ..... . . ...... .. . . .... . . . ........... . .
lowQualScore : 00000 2222 999999999 888 99 0 99 99 99 7 99 0 7 33333 222222 1111 7 3 7 7 33333333333333333 7 5 7 555 5 6666666 7 7 4 99 7 7 1 99 7 7 99 7 11111111111 4444444444444 4444444444444 7 7 44 444444 00 7 2 0 2 2 555555555 2222 5 0 0 0 5 88 2 2 0 8 888 7 4 0 0 4 0 88888 2 0 222222 88 0 8 2222 2 8 0 55555555555 7 7
consensus : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
Reference ( family-2460 ) : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGACT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|1 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAA-CCCCCCGGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGCTCTGACCCCTTGTACACCTATGTCTATTGGCTTACCCCG-TGTCCCTT-AAAGGTATACCCTGCCAGTTGGCTTGCCAAGTGTATACCTAGCCTTTGGGTTTGGTCAC-C-TGATCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTTTGTCACCGGGGTAC--AGACTTATTCAGTTTTTATTTCCGA-GTGACAAAGTTACAGTTACTAACCA--ACGGA-CACAACCTATATCTTGAGACTTATTCAGCCCCTT-GTGTGAATAGCT-TATTCAGCTATTCGCCAAACCCTAAAGCTTCTTATTTTATT-ATA-TAA-CTTCCTTTGT-TCTGATCTGTCGGCT--TCGACTGT--AACCGCAAGAGTGATGCTTCC-ACCGCTTGCAACCATATTTA-TACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTCCCGTGCCCGATTTCAATTCATTAGCACCAAACCCGATTC
gi|11 : CCAAACCCTAAAGCTTCTTATTTTATT-ATA-C-AACTTACTTTAC-TTTGATCTGTC---T--TCAACTGC--AACCGCAAGATTGATGTTTTC-GCAGCTTGCAGCCGTATATA-
gi|12 : A-GTGACAAAGTTACAGTGGCTAACCTGAACGGA-CGCAACCTATATCTTTAGACTTATTCAGACCCTT-ATGAGAATAGCT-TATTCAGATATTCACCAAACCCT
gi|13 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GC-GGTACCGGTACCATG--ATTACA-CTCA-----G
gi|15 : -----------TCAAATAGACTTCCTTGCCCGATTTCAATTC
gi|16 : CTAACTT--ACAGA-CGCAACCTATATCTTGAGACTTATTccgattcatt
gi|17 : T---AACGTGAAC--CCCAGCCGAGCGGTATAT-TT--
gi|2 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTGCA-CTCA-----GGATCTCTGGATT------TTATATTC---TAGCAACTGATTAAAAAGG-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAAATCTATG--------TATTTATGTGCT-GTAGGCTAGATCTAATTACTAAATCAAT-ATCAG-------------------ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACTG-ACATATAAAAAAAACTGTA-CC-ACTGGTGCAGCCCAAATGA-C-----------CCTGACAGTTGGTCCTGACACTTT-------------G-TCAATAGATGTACC------TCTGGTCTTATACACTTGGGGCCCTT-AACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCTCTTCAACT-TATACTCTGCCATTTGGCTTACCC-A-GTGTGCTTAGCCCTTGGGTTTGATCAC-C-TGGTTCACCGCGACCA-AGAAGTCTCTTGTCCGTAGGTGTTTCCAGTTCACGCTGTCACCGGGGTAC--AAACTT-CCCAGTTTTTATTGTCGA-GTGACAAAGTTACAGTGGTT----------------AACCTATAACTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTACAGCTTCTTGTTTTATTAATATT-A-CTTACTTTTCTTTTGATCCGACAACT--TCGACTGC--AACCGCAAGTGTGATG------A----TTGCAGCCGTATCTA-AACTACCCGTGCGACTTAAATTCGTCCAACCCAGGGGAAGTCAGGTCATTCCAATATCAAATAGACTTCCGTAACCGATTTTAACTCATTAA-AGCAAACCCGATTC
gi|3 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCGTGCCGAGCGGTATAT-TT--TCT--GCGGGCAC--GTATC-TG--AATACA-CTCA-----GGATCTCTGGA-T------TTATATTC---TGACAAATGATTGAAAAGA-AAC-G-TACTTTACGAGTTGGAATCAATGACCCAAAATTTATG--------T--------GCTCATA-GCTAGATCTA-TTACTAAATCAATAATAC-----TTTA-GATGATTTC-TTAAATCAAAATAA-CTCCC-GGAAGTGTCAATTGAACA-AT-AAAAC--ATTTAGCCAACTGGT--AGCCCAAATGA-CCCTGACGCGGTCCTGAC-------------ACTTT-------------G-TCAATAGCCGTACC------TTTGGTCCTATACACTTGTTGCCCTT-GACCAattacattctgtatca
gi|4 : acttcacgtctgctcttatatatccttgactcaatatgtcctctctcattatcaacaatacgccttggacgtctttcggttatatattgcccatttggctgaacttggtccgatattactcaatccaataatgtcaccaaattgcggtccggttcctctgtttctcgccgaatctaatctaaattgaacactattctgtggctcattaactcttaaataatttgccaccggggtatcagaagtccacgtacttggcctctgtcctgtaactatccctgagtcagtcaaactctgtgcttgaggacgaggagtcgaatgaatcatactttctgtttgtctaatactactttctaatttctttatttcgtcctgaaggacagtgatttcttgatctacgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataataacttttCTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAACCCCCC-GGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCA
gi|5 : cacttcacgtctgctattatatgcccttgactcaatatgtcctctctcattatcaacaatacaccttggacatctttcagttatatattgcccattggctgaacttggtctgatattactcaatccaagcatgtcaccaaattgcggtccggttcgtctgtgtctctccgagtctaatctaaattgaacactattttgtggctcattaactcttaaatagtttgccaccggggtatcagaagtccatgtacttggtctctgtcctgtaactatctctgagtcatgcaaactttgtgtttgaggacgcggagtccaatgagtaatactttctgtttgtctaatactacttcataatttctttatttcgtcctgaaggacagtggtttcttgatctatgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataattacttttT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--TCT--GCGGGTAC--GTACC-TG--AATACA-CTCA-----GGGTCTCTGGATT------TTATATTC---TGACAAATGATTTGAAAGAGAACTG-TACTTTAC-AGTTGGAATCAATGA-CC-AAATTTATG--------T--------GCT-CTAGGCTAGATCTATTTACTAAATCAAT-A------TATTTACGATGA-TCT-TTAAATC-AAATAA-CCCCC-GGAAGTCT--AT-----AAATAAAAAC--TTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTA-------------GTTCAA-AGCCGTACA------TCTGGTCCTATACACTTGTTACCCTT-GACCAAACGTCGTACACTTGGTCCTGACCACTTGTAT-CCTATGCCTATCGACCTACCCCACTGTCCCTT-A-------ACCCAGCCAGTTGGCTTACC---AGTGTACCTAGCCTTTGG--TTGGTCACACATGGTCCACCGCGACCAGAGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACT-TGTCATCGGGGTACAGAAACTTATTCAGTTTTATTTGCCGAGGTGATAAAGTTACAGTGGCTAACCT--ACAGACCGCAACCTATATCTTGAGACTTTTTCAGCCCCTTAATGTGAATAGCTGTATTCAGCTATTCACCAAACCCTAGAGCCTATTTATTTATT-GTA-T-A-CTTACTTTGC-TTCGATGTGTCACCTGATCGACTGCGAGATCGCGAGAGTGCTGTTTTCAACAGCTTTCAGCCCTAT-TATAACTACCCGGGCGACTTAGACTCGTCCAACCCCAGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|6 : TATTC---CAACAAATGATTAGAAAGC-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAACTCCATGAATTCATAT--------GCT-GTAGGATATATCTATTTACTAAATCAAT-ATACGTGTATTTACGATG----------------ATAA-CCCCCTGGAAGTCT--ATTG-AC--ATAAAAAC--CTGTA-TC-ACTGGTA---CCCAAATGACC-----------CCCAAT-------------ACCTG-------------G-TCAAAAGATGTACCTCTAGATCTGGTCATGTACACTCGTGACCCTTAAAACAAACGTTGTACACTTGGTCCTGACCACTAATACACCTATGCCTACTGACTTACCTCG-TG----------------CCCTGCCAGTTGGCTAGCCC--CGTGTACTTGGCCTTTGGGTTTGATCAC-C-T
gi|7 : -C-TGGTCCACCGCGACCA-AGAGGTGTTTTGTTCGTAGGTGTTTCCAGTTCACTCTATCATCGGGATAC--AAACTTATTCAGCATTTATTACCGA-GTGACAGAGT-----TGGCTAACCA--GAGGA-CGCAACCTATAACCCAAGATTTAGTCAGTCCCTT-ATTTGAACAGCT-TATTCAGCTACTCACCAAACCCTAAATATTCTTGTTATAT
gi|8 : -ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACAG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCTCAAATAA-C-----------CATGAC-------------ACTTGGTCCTGACATTTTG-TCAATAGTTGTACC------TCAGGTACTATACACTTGGGA-ACTT-G-TCAATAGTTGTACCTCTGGTCCTa
gi|9 : gcaataaataatcaatcaATCACACCTTAAAGTTGCTACCAAAATGCTTTATAAGCATTTGGTTTAAACGTGCACACTCCAGCCGAGCGGTATATATTTACCTCGGCGTGACC--GTACC-TGTAAATACACCTCAGATACGGGTGCGTGGATTGTCCCATTATATTCATTTGACAAATGTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAAATAATTTGCCACTGGGGTATCAGAATTCCACGTACTTGGTCTCTGTCCTACAACTATCCCTGAGTCAGGCAACTTTTGTGCTTGGGGACGCGGAGTCGAATGAAT
Unaligned ( gi|14 ): GACGTAAAGCAATAAATAATCAATCAACCGATCAATAGCTCTC
Alignments
lowQualScore : 22222 2222 222222222 11111 111111 1111 33333333333333333 111 2222222 1 22222222222 3333333333333 3333333333333 111111 1 555555555 4444 1 11 111 1 11111 1 111111 11 1111 1 1 44444444444
lowQualScore : 55555 1111 222222222 888 66 5 66 77 77 5 77 1 5 44444 999999 7777 6 7 6 6 99999999999999999 6 3 6 777 2 4444444 5 5 1 77 1 5 5 77 5 5 00 5 77777777777 1111111111111 1111111111111 5 1 22 666666 22 5 3 0 3 0 666666666 4444 2 8 8 0 6 33 3 0 8 0 222 6 1 8 8 1 0 55555 0 0 666666 33 7 0 0000 0 0 0 77777777777 6 0
lowQualScore : ..... .... ......... ... .. . .. .. .. . .. . . ..... ...... .... . . . . ................. . . . ... . ....... . . . .. . . . .. . . .. . ........... ............. ............. . . .. ...... .. . . . . . ......... .... . . . . . .. . . . . ... . . . . . . ..... . . ...... .. . . .... . . . ........... . .
lowQualScore : 00000 2222 999999999 888 99 0 99 99 99 7 99 0 7 33333 222222 1111 7 3 7 7 33333333333333333 7 5 7 555 5 6666666 7 7 4 99 7 7 1 99 7 7 99 7 11111111111 4444444444444 4444444444444 7 7 44 444444 00 7 2 0 2 2 555555555 2222 5 0 0 0 5 88 2 2 0 8 888 7 4 0 0 4 0 88888 2 0 000000 88 0 8 2222 2 8 0 55555555555 7 7
consensus : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
Reference ( family-2460 ) : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|1 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAA-CCCCCCGGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGCTCTGACCCCTTGTACACCTATGTCTATTGGCTTACCCCG-TGTCCCTT-AAAGGTATACCCTGCCAGTTGGCTTGCCAAGTGTATACCTAGCCTTTGGGTTTGGTCAC-C-TGATCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTTTGTCACCGGGGTAC--AGACTTATTCAGTTTTTATTTCCGA-GTGACAAAGTTACAGTTACTAACCA--ACGGA-CACAACCTATATCTTGAGACTTATTCAGCCCCTT-GTGTGAATAGCT-TATTCAGCTATTCGCCAAACCCTAAAGCTTCTTATTTTATT-ATA-TAA-CTTCCTTTGT-TCTGATCTGTCGGCT--TCGACTGT--AACCGCAAGAGTGATGCTTCC-ACCGCTTGCAACCATATTTA-TACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTCCCGTGCCCGATTTCAATTCATTAGCACCAAACCCGATTC
gi|11 : CCAAACCCTAAAGCTTCTTATTTTATT-ATA-C-AACTTACTTTAC-TTTGATCTGTC---T--TCAACTGC--AACCGCAAGATTGATGTTTTC-GCAGCTTGCAGCCGTATATA-
gi|12 : A-GTGACAAAGTTACAGTGGCTAACCTGAACGGA-CGCAACCTATATCTTTAGACTTATTCAGACCCTT-ATGAGAATAGCT-TATTCAGATATTCACCAAACCCT
gi|13 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GC-GGTACCGGTACCATG--ATTACA-CTCA-----G
gi|15 : -----------TCAAATAGACTTCCTTGCCCGATTTCAATTC
gi|16 : CTAACTT--ACAGA-CGCAACCTATATCTTGAGACTTATTccgattcatt
gi|17 : T---AACGTGAAC--CCCAGCCGAGCGGTATAT-TT--
gi|2 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTGCA-CTCA-----GGATCTCTGGATT------TTATATTC---TAGCAACTGATTAAAAAGG-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAAATCTATG--------TATTTATGTGCT-GTAGGCTAGATCTAATTACTAAATCAAT-ATCAG-------------------ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACTG-ACATATAAAAAAAACTGTA-CC-ACTGGTGCAGCCCAAATGA-C-----------CCTGACAGTTGGTCCTGACACTTT-------------G-TCAATAGATGTACC------TCTGGTCTTATACACTTGGGGCCCTT-AACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCTCTTCAACT-TATACTCTGCCATTTGGCTTACCC-A-GTGTGCTTAGCCCTTGGGTTTGATCAC-C-TGGTTCACCGCGACCA-AGAAGTCTCTTGTCCGTAGGTGTTTCCAGTTCACGCTGTCACCGGGGTAC--AAACTT-CCCAGTTTTTATTGTCGA-GTGACAAAGTTACAGTGGTT----------------AACCTATAACTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTACAGCTTCTTGTTTTATTAATATT-A-CTTACTTTTCTTTTGATCCGACAACT--TCGACTGC--AACCGCAAGTGTGATG------A----TTGCAGCCGTATCTA-AACTACCCGTGCGACTTAAATTCGTCCAACCCAGGGGAAGTCAGGTCATTCCAATATCAAATAGACTTCCGTAACCGATTTTAACTCATTAA-AGCAAACCCGATTC
gi|3 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCGTGCCGAGCGGTATAT-TT--TCT--GCGGGCAC--GTATC-TG--AATACA-CTCA-----GGATCTCTGGA-T------TTATATTC---TGACAAATGATTGAAAAGA-AAC-G-TACTTTACGAGTTGGAATCAATGACCCAAAATTTATG--------T--------GCTCATA-GCTAGATCTA-TTACTAAATCAATAATAC-----TTTA-GATGATTTC-TTAAATCAAAATAA-CTCCC-GGAAGTGTCAATTGAACA-AT-AAAAC--ATTTAGCCAACTGGT--AGCCCAAATGA-CCCTGACGCGGTCCTGAC-------------ACTTT-------------G-TCAATAGCCGTACC------TTTGGTCCTATACACTTGTTGCCCTT-GACCAattacattctgtatca
gi|4 : acttcacgtctgctcttatatatccttgactcaatatgtcctctctcattatcaacaatacgccttggacgtctttcggttatatattgcccatttggctgaacttggtccgatattactcaatccaataatgtcaccaaattgcggtccggttcctctgtttctcgccgaatctaatctaaattgaacactattctgtggctcattaactcttaaataatttgccaccggggtatcagaagtccacgtacttggcctctgtcctgtaactatccctgagtcagtcaaactctgtgcttgaggacgaggagtcgaatgaatcatactttctgtttgtctaatactactttctaatttctttatttcgtcctgaaggacagtgatttcttgatctacgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataataacttttCTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAACCCCCC-GGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCA
gi|5 : cacttcacgtctgctattatatgcccttgactcaatatgtcctctctcattatcaacaatacaccttggacatctttcagttatatattgcccattggctgaacttggtctgatattactcaatccaagcatgtcaccaaattgcggtccggttcgtctgtgtctctccgagtctaatctaaattgaacactattttgtggctcattaactcttaaatagtttgccaccggggtatcagaagtccatgtacttggtctctgtcctgtaactatctctgagtcatgcaaactttgtgtttgaggacgcggagtccaatgagtaatactttctgtttgtctaatactacttcataatttctttatttcgtcctgaaggacagtggtttcttgatctatgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataattacttttT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--TCT--GCGGGTAC--GTACC-TG--AATACA-CTCA-----GGGTCTCTGGATT------TTATATTC---TGACAAATGATTTGAAAGAGAACTG-TACTTTAC-AGTTGGAATCAATGA-CC-AAATTTATG--------T--------GCT-CTAGGCTAGATCTATTTACTAAATCAAT-A------TATTTACGATGA-TCT-TTAAATC-AAATAA-CCCCC-GGAAGTCT--AT-----AAATAAAAAC--TTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTA-------------GTTCAA-AGCCGTACA------TCTGGTCCTATACACTTGTTACCCTT-GACCAAACGTCGTACACTTGGTCCTGACCACTTGTAT-CCTATGCCTATCGACCTACCCCACTGTCCCTT-A-------ACCCAGCCAGTTGGCTTACC---AGTGTACCTAGCCTTTGG--TTGGTCACACATGGTCCACCGCGACCAGAGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACT-TGTCATCGGGGTACAGAAACTTATTCAGTTTTATTTGCCGAGGTGATAAAGTTACAGTGGCTAACCT--ACAGACCGCAACCTATATCTTGAGACTTTTTCAGCCCCTTAATGTGAATAGCTGTATTCAGCTATTCACCAAACCCTAGAGCCTATTTATTTATT-GTA-T-A-CTTACTTTGC-TTCGATGTGTCACCTGATCGACTGCGAGATCGCGAGAGTGCTGTTTTCAACAGCTTTCAGCCCTAT-TATAACTACCCGGGCGACTTAGACTCGTCCAACCCCAGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|6 : TATTC---CAACAAATGATTAGAAAGC-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAACTCCATGAATTCATAT--------GCT-GTAGGATATATCTATTTACTAAATCAAT-ATACGTGTATTTACGATG----------------ATAA-CCCCCTGGAAGTCT--ATTG-AC--ATAAAAAC--CTGTA-TC-ACTGGTA---CCCAAATGACC-----------CCCAAT-------------ACCTG-------------G-TCAAAAGATGTACCTCTAGATCTGGTCATGTACACTCGTGACCCTTAAAACAAACGTTGTACACTTGGTCCTGACCACTAATACACCTATGCCTACTGACTTACCTCG-TG----------------CCCTGCCAGTTGGCTAGCCC--CGTGTACTTGGCCTTTGGGTTTGATCAC-C-T
gi|7 : -C-TGGTCCACCGCGACCA-AGAGGTGTTTTGTTCGTAGGTGTTTCCAGTTCACTCTATCATCGGGATAC--AAACTTATTCAGCATTTATTACCGA-GTGACAGAGT-----TGGCTAACCA--GAGGA-CGCAACCTATAACCCAAGATTTAGTCAGTCCCTT-ATTTGAACAGCT-TATTCAGCTACTCACCAAACCCTAAATATTCTTGTTATAT
gi|8 : -ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACAG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCTCAAATAA-C-----------CATGAC-------------ACTTGGTCCTGACATTTTG-TCAATAGTTGTACC------TCAGGTACTATACACTTGGGA-ACTT-G-TCAATAGTTGTACCTCTGGTCCTa
gi|9 : gcaataaataatcaatcaATCACACCTTAAAGTTGCTACCAAAATGCTTTATAAGCATTTGGTTTAAACGTGCACACTCCAGCCGAGCGGTATATATTTACCTCGGCGTGACC--GTACC-TGTAAATACACCTCAGATACGGGTGCGTGGATTGTCCCATTATATTCATTTGACAAATGTTTa
blockSeqs : TTAAA GCTT AAGCATTTG TTA AC A TA CG CG A TA T C GATAC GTCCCA ATTT G T G C TATTTATGT C A A ATG C ATTTCT A C T CA T A T AA G A C CCTGACGCGGT AGTTGGTCCTGAC GTCCTGACATTTT T T AT TCTAGA GG A A C T CAACTTAT CA G A A G C AG A G TGA C A A G A A CAA T ACCTGA GA T AACA A T TCATTCCAATA C
blockSeqs : . . . . . . . . . . . T . . . T . T . . AATTCATAT . T . GTG C ATTCTA . . . . T . T . . . . . . . . T CC . TT . A . T A CC G . . . C . A . T . T . . G . TTA . AACT . T GCA C . . .
blockSeqs : . . . . . . . . . . . A . . . T . T . . T . T . G C ATCTT . . . . T . A . . . . . . . . T TT . GT . . . . . A . . . . . . . . T . C . . T . TA . T . . A . . .
blockSeqs : . . . . . . . . . T . . . T . . . . T . T . . . A . . . . T . T . . . . . . . . A CC . TT . . . . A . T . . G
blockSeqs : . . . . . . . . . A . . . C . . . . T . . . . . . . . . . A . . . . . . . . . . T AT . TG . . .
blockSeqs : . . . . . . . . . A . . . . . . . . . . . . . . . . . . . TT . GG .
blockSeqs : . . . .
blockSeqCons : T***
originalCons : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
finalCons : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTCT---GACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAAATAATTTGCCACTGGGGTATCAGAATTCCACGTACTTGGTCTCTGTCCTACAACTATCCCTGAGTCAGGCAACTTTTGTGCTTGGGGACGCGGAGTCGAATGAAT
Unaligned ( gi|14 ): GACGTAAAGCAATAAATAATCAATCAACCGATCAATAGCTCTC
Alignments
lowQualScore : 22222 2222 222222222 11111 111111 1111 33333333333333333 111 2222222 1 22222222222 3333333333333 3333333333333 111111 1 555555555 4444 1 11 111 1 11111 1 111111 11 1111 1 1 44444444444
lowQualScore : 55555 1111 222222222 888 66 5 66 77 77 5 77 1 5 44444 999999 7777 6 7 6 6 99999999999999999 6 3 6 777 2 4444444 5 5 1 77 1 5 5 77 5 5 00 5 77777777777 1111111111111 1111111111111 5 1 22 666666 22 5 3 0 3 0 666666666 4444 2 8 8 0 6 33 3 0 8 0 222 6 1 8 8 1 0 55555 0 0 666666 33 7 0 0000 0 0 0 77777777777 6 0
lowQualScore : ..... .... ......... ... .. . .. .. .. . .. . . ..... ...... .... . . . . ................. . . . ... . ....... . . . .. . . . .. . . .. . ........... ............. ............. . . .. ...... .. . . . . . ......... .... . . . . . .. . . . . ... . . . . . . ..... . . ...... .. . . .... . . . ........... . .
lowQualScore : 00000 2222 999999999 888 99 0 99 99 99 7 99 0 7 33333 222222 1111 7 3 7 7 33333333333333333 7 5 7 555 5 6666666 7 7 4 99 7 7 1 99 7 7 99 7 11111111111 4444444444444 4444444444444 7 7 44 444444 00 7 2 0 2 2 555555555 2222 5 0 0 0 5 88 2 2 0 8 888 7 4 0 0 4 0 88888 2 0 000000 88 0 8 2222 2 8 0 55555555555 7 7
consensus : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
Reference ( family-2460 ) : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ANTACA-CTCA-----GGATCTCTGGATT------TTATATTC---TGACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGCTAGATCTATTTACTAAATCAAT-ATACGTGTATTTACGATGA-TTC-ATAAATC-AAATAA-CCCCC-GGAAGTCT--ATTG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGNCGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCCCTT-AA---TATACCCTGCCAGTTGGCTTGCCC-GCGTGTACCTAGCCTTTGGGTTTGGTCAC-C-TGGTCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTCTGTCACCGGGGTAC--AAACTTATTCAGTTTTTATTGCCGA-GTGACAAAGTTACAGTGGCTAACCT--ACGGA-CGCAACCTATATCTTGAGACTTATTCAGCCCCTT-ATGTGAATAGCT-TATTCAGCTATTCACCAAACCCTAAAGCTTCTTGTTTTATT-ATA-T-A-CTTACTTTGC-TTTGATCTGTCGNCT--TCGACTGC--AACCGCAAGAGTGATGTTTTC-ACAGCTTGCAGCCGTATNTA-AACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|1 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAA-CCCCCCGGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCAAACGTTGTACACTTGGCTCTGACCCCTTGTACACCTATGTCTATTGGCTTACCCCG-TGTCCCTT-AAAGGTATACCCTGCCAGTTGGCTTGCCAAGTGTATACCTAGCCTTTGGGTTTGGTCAC-C-TGATCCACCGCGACCA-AGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACTTTGTCACCGGGGTAC--AGACTTATTCAGTTTTTATTTCCGA-GTGACAAAGTTACAGTTACTAACCA--ACGGA-CACAACCTATATCTTGAGACTTATTCAGCCCCTT-GTGTGAATAGCT-TATTCAGCTATTCGCCAAACCCTAAAGCTTCTTATTTTATT-ATA-TAA-CTTCCTTTGT-TCTGATCTGTCGGCT--TCGACTGT--AACCGCAAGAGTGATGCTTCC-ACCGCTTGCAACCATATTTA-TACTACCCGGGCGACTTAGACTCGTCCAACCCAGGGGTAGTCAGG-----------TCAAATAGACTCCCGTGCCCGATTTCAATTCATTAGCACCAAACCCGATTC
gi|11 : CCAAACCCTAAAGCTTCTTATTTTATT-ATA-C-AACTTACTTTAC-TTTGATCTGTC---T--TCAACTGC--AACCGCAAGATTGATGTTTTC-GCAGCTTGCAGCCGTATATA-
gi|12 : A-GTGACAAAGTTACAGTGGCTAACCTGAACGGA-CGCAACCTATATCTTTAGACTTATTCAGACCCTT-ATGAGAATAGCT-TATTCAGATATTCACCAAACCCT
gi|13 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GC-GGTACCGGTACCATG--ATTACA-CTCA-----G
gi|15 : -----------TCAAATAGACTTCCTTGCCCGATTTCAATTC
gi|16 : CTAACTT--ACAGA-CGCAACCTATATCTTGAGACTTATTccgattcatt
gi|17 : T---AACGTGAAC--CCCAGCCGAGCGGTATAT-TT--
gi|2 : ---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTGCA-CTCA-----GGATCTCTGGATT------TTATATTC---TAGCAACTGATTAAAAAGG-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAAATCTATG--------TATTTATGTGCT-GTAGGCTAGATCTAATTACTAAATCAAT-ATCAG-------------------ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACTG-ACATATAAAAAAAACTGTA-CC-ACTGGTGCAGCCCAAATGA-C-----------CCTGACAGTTGGTCCTGACACTTT-------------G-TCAATAGATGTACC------TCTGGTCTTATACACTTGGGGCCCTT-AACCAAACGTTGTACACTTGGTCCTGACCACTTGTACACCTATGCCTATTGACCTACCCCG-TGTCTCTTCAACT-TATACTCTGCCATTTGGCTTACCC-A-GTGTGCTTAGCCCTTGGGTTTGATCAC-C-TGGTTCACCGCGACCA-AGAAGTCTCTTGTCCGTAGGTGTTTCCAGTTCACGCTGTCACCGGGGTAC--AAACTT-CCCAGTTTTTATTGTCGA-GTGACAAAGTTACAGTGGTT----------------AACCTATAACTTGAGACTTATTCAGTCCCTT-ATGTGAATAGCT-TATTCAGCTACTCACCAAACCCTACAGCTTCTTGTTTTATTAATATT-A-CTTACTTTTCTTTTGATCCGACAACT--TCGACTGC--AACCGCAAGTGTGATG------A----TTGCAGCCGTATCTA-AACTACCCGTGCGACTTAAATTCGTCCAACCCAGGGGAAGTCAGGTCATTCCAATATCAAATAGACTTCCGTAACCGATTTTAACTCATTAA-AGCAAACCCGATTC
gi|3 : CTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---AACGTGCAC--CCGTGCCGAGCGGTATAT-TT--TCT--GCGGGCAC--GTATC-TG--AATACA-CTCA-----GGATCTCTGGA-T------TTATATTC---TGACAAATGATTGAAAAGA-AAC-G-TACTTTACGAGTTGGAATCAATGACCCAAAATTTATG--------T--------GCTCATA-GCTAGATCTA-TTACTAAATCAATAATAC-----TTTA-GATGATTTC-TTAAATCAAAATAA-CTCCC-GGAAGTGTCAATTGAACA-AT-AAAAC--ATTTAGCCAACTGGT--AGCCCAAATGA-CCCTGACGCGGTCCTGAC-------------ACTTT-------------G-TCAATAGCCGTACC------TTTGGTCCTATACACTTGTTGCCCTT-GACCAattacattctgtatca
gi|4 : acttcacgtctgctcttatatatccttgactcaatatgtcctctctcattatcaacaatacgccttggacgtctttcggttatatattgcccatttggctgaacttggtccgatattactcaatccaataatgtcaccaaattgcggtccggttcctctgtttctcgccgaatctaatctaaattgaacactattctgtggctcattaactcttaaataatttgccaccggggtatcagaagtccacgtacttggcctctgtcctgtaactatccctgagtcagtcaaactctgtgcttgaggacgaggagtcgaatgaatcatactttctgtttgtctaatactactttctaatttctttatttcgtcctgaaggacagtgatttcttgatctacgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataataacttttCTCTAAATACCAGAGATCCCACC-----GCTGCCACCAAAAT----TAT---------GT---ACCGTGCAC--CCCAGCCGAGCGGTATAT-TT--CCT--GCGGGCAC--GTACC-TG--ATTACA-CTCA-----GGATCTCTGGATT------TTATATTC----AACAAATGATTAAAAAGA-AACTGTTACTTTAC-AGTTGGAATCAATGA-CCAAAATCTATG--------T--------GCT-ATAGGTTAGATCTATTTACTGAATCAAT-ATACATGTATTTACAATGA-TTCTATAAATC-AAATAACCCCCC-GGAAGTCT--ATTG-ACATATAAAAAT--CTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTG-------------G-TCAATAGTTGTACC------TCTGGTCCTATACACTTGGTACCCTT-GACCA
gi|5 : cacttcacgtctgctattatatgcccttgactcaatatgtcctctctcattatcaacaatacaccttggacatctttcagttatatattgcccattggctgaacttggtctgatattactcaatccaagcatgtcaccaaattgcggtccggttcgtctgtgtctctccgagtctaatctaaattgaacactattttgtggctcattaactcttaaatagtttgccaccggggtatcagaagtccatgtacttggtctctgtcctgtaactatctctgagtcatgcaaactttgtgtttgaggacgcggagtccaatgagtaatactttctgtttgtctaatactacttcataatttctttatttcgtcctgaaggacagtggtttcttgatctatgtccctattagccataattcaaaacaaacacaaaaagttttctttctttaataattacttttT---------GT---AACGTGCAC--CCCAGCCGAGCGGTATAT-TT--TCT--GCGGGTAC--GTACC-TG--AATACA-CTCA-----GGGTCTCTGGATT------TTATATTC---TGACAAATGATTTGAAAGAGAACTG-TACTTTAC-AGTTGGAATCAATGA-CC-AAATTTATG--------T--------GCT-CTAGGCTAGATCTATTTACTAAATCAAT-A------TATTTACGATGA-TCT-TTAAATC-AAATAA-CCCCC-GGAAGTCT--AT-----AAATAAAAAC--TTGTA-CC-ACTGGTACAGCCCAAATGA-C-----------CCTGAC-------------ACTTA-------------GTTCAA-AGCCGTACA------TCTGGTCCTATACACTTGTTACCCTT-GACCAAACGTCGTACACTTGGTCCTGACCACTTGTAT-CCTATGCCTATCGACCTACCCCACTGTCCCTT-A-------ACCCAGCCAGTTGGCTTACC---AGTGTACCTAGCCTTTGG--TTGGTCACACATGGTCCACCGCGACCAGAGAGGTCTCTTGTCCGTAGGTGTTTCCAGTTCACT-TGTCATCGGGGTACAGAAACTTATTCAGTTTTATTTGCCGAGGTGATAAAGTTACAGTGGCTAACCT--ACAGACCGCAACCTATATCTTGAGACTTTTTCAGCCCCTTAATGTGAATAGCTGTATTCAGCTATTCACCAAACCCTAGAGCCTATTTATTTATT-GTA-T-A-CTTACTTTGC-TTCGATGTGTCACCTGATCGACTGCGAGATCGCGAGAGTGCTGTTTTCAACAGCTTTCAGCCCTAT-TATAACTACCCGGGCGACTTAGACTCGTCCAACCCCAGGGTAGTCAGG-----------TCAAATAGACTTCCGTGCCCGATTTCAATTCATTAGCACCGAACCCGATTC
gi|6 : TATTC---CAACAAATGATTAGAAAGC-AACTGTTACTTTAC-AGTTTGAATCAATTA-CCAAACTCCATGAATTCATAT--------GCT-GTAGGATATATCTATTTACTAAATCAAT-ATACGTGTATTTACGATG----------------ATAA-CCCCCTGGAAGTCT--ATTG-AC--ATAAAAAC--CTGTA-TC-ACTGGTA---CCCAAATGACC-----------CCCAAT-------------ACCTG-------------G-TCAAAAGATGTACCTCTAGATCTGGTCATGTACACTCGTGACCCTTAAAACAAACGTTGTACACTTGGTCCTGACCACTAATACACCTATGCCTACTGACTTACCTCG-TG----------------CCCTGCCAGTTGGCTAGCCC--CGTGTACTTGGCCTTTGGGTTTGATCAC-C-T
gi|7 : -C-TGGTCCACCGCGACCA-AGAGGTGTTTTGTTCGTAGGTGTTTCCAGTTCACTCTATCATCGGGATAC--AAACTTATTCAGCATTTATTACCGA-GTGACAGAGT-----TGGCTAACCA--GAGGA-CGCAACCTATAACCCAAGATTTAGTCAGTCCCTT-ATTTGAACAGCT-TATTCAGCTACTCACCAAACCCTAAATATTCTTGTTATAT
gi|8 : -ATAAATC-AAATAA-CCCCC-GGAAGTCT--ACAG-ACATATAAAAAC--CTGTA-CC-ACTGGTACAGCTCAAATAA-C-----------CATGAC-------------ACTTGGTCCTGACATTTTG-TCAATAGTTGTACC------TCAGGTACTATACACTTGGGA-ACTT-G-TCAATAGTTGTACCTCTGGTCCTa
gi|9 : gcaataaataatcaatcaATCACACCTTAAAGTTGCTACCAAAATGCTTTATAAGCATTTGGTTTAAACGTGCACACTCCAGCCGAGCGGTATATATTTACCTCGGCGTGACC--GTACC-TGTAAATACACCTCAGATACGGGTGCGTGGATTGTCCCATTATATTCATTTGACAAATGTTTa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): CTTAAATAATTTGCCACTGGGGTATCAGAATTCCACGTACTTGGTCTCTGTCCTACAACTATCCCTGAGTCAGGCAACTTTTGTGCTTGGGGACGCGGAGTCGAATGAAT
Unaligned ( gi|14 ): GACGTAAAGCAATAAATAATCAATCAACCGATCAATAGCTCTC