lowQualScore : 1111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 999999999999 2222 2222 2222222222222222222222222222222222222222222222222222222222222222222 11111111111 44444444444444444444 111111 3333 11111 11111111111111111 1 111 999999999999999999999999999999999999999 2222222222222 22222222 111 2222222222222 4444444444444444444 11111 44444 333 1111 1111 22222222 111111 1 11 11111 1 2222 66666666666 77777777777777777777777777777777 11 1111 2222 1111111 22222222222222222 111111 333333 1 5555555555555555555555555555555555555555555 33333333333333333333333333 11 55555555555555555555555555
lowQualScore : 3 3 2 4 2 777777777777 9999 6 5 2222 666 3 4444444444444444444444444444444444444444444444444444444444444444444 5 5 2 8 66 99999999999 1 22222222222222222222 5 88 66 555555 0 4 66 1 2222 77777 6 66666666666666666 44 3 777 777 222222222222222222222222222222222222222 5 77 9999999999999 8888 44444444 66 1 1 7 888 777 0 0 5555555555555 1 0000000000000000000 4 55 4 4 55555 4 2 22222 7777 3 3 3 55 0 3 222 0 1111 0000 66 5 44444444 5 444444 5 777 888 0 0 4 66 1 3 5 1 77 88888 5 0 2222 6 6 22222222222 55555555555555555555555555555555 8 33 3333 1 5 4 3333 4 4 4 4 55 4 4 66 1 9999999 00000000000000000 4 222222 1 2 111111 777 1 0 666 4 55 4 44 0 3 6666 2 2 3 7777 2 66 3 3 5555555555555555555555555555555555555555555 2 2 5 555 11111111111111111111111111 33 3 4 33333333333333333333333333 6 6 6
lowQualScore : . . . . . ............ .... . . .... ... . ................................................................... . . . . .. ........... . .................... . .. .. ...... . . .. . .... ..... . ................. .. . ... ... ....................................... . .. ............. .... ........ .. . . . ... ... . . ............. . ................... . .. . . ..... . . ..... .... . . . .. . . ... . .... .... .. . ........ . ...... . ... ... . . . .. . . . . .. ..... . . .... . . ........... ................................ . .. .... . . . .... . . . . .. . . .. . ....... ................. . ...... . . ...... ... . . ... . .. . .. . . .... . . . .... . .. . . ........................................... . . . ... .......................... .. . . .......................... . . .
lowQualScore : 0 0 0 0 5 222222222222 6666 0 0 8888 222 0 3333333333333333333333333333333333333333333333333333333333333333333 0 0 9 9 99 44444444444 8 00000000000000000000 0 22 99 111111 4 4 11 1 9999 66666 4 66666666666666666 77 3 555 555 888888888888888888888888888888888888888 7 99 7777777777777 1111 88888888 99 4 7 0 888 111 1 1 6666666666666 4 6666666666666666666 4 33 4 4 66666 4 7 99999 7777 6 6 6 00 5 6 333 7 4444 6666 99 0 22222222 0 444444 0 444 888 2 2 4 11 1 1 3 6 99 99999 0 9 4444 7 7 55555555555 99999999999999999999999999999999 0 66 1111 7 0 4 9999 4 0 0 0 66 0 4 11 1 1111111 66666666666666666 4 888888 9 0 888888 888 9 1 333 0 55 0 33 4 1 5555 9 9 3 2222 7 66 6 6 3333333333333333333333333333333333333333333 9 9 7 000 77777777777777777777777777 11 6 7 55555555555555555555555555 7 7 7
consensus : ATNCTCATCCAAATTAGCAAGATGATTTTGAATNGTGGAACATGAC---A-CAT-TATACAAGTATTACATTTCACTGCATTGTACA-C-AA-TTTT-TCTTCCTT------------------CGTCGTCT--ANC--------TTTATAC---A------CA----T-GTAAGCTGTCTTGGTT-GC-TGGGA-GTACA--AGACC---AATG---GTCTGGTGCTA-CGATT---TAT------CACCAGACT-GTT-AACA--GGC---A-CCGTCCCTTGG-T--GCTCCCTGCAA---TCAAGTCAACAAT----TCAACATTT--------TTGTA----AAATTGTTT-TCATTTATAC---AA-TCGATG--TCTTTTAAATCATCCTTAA---------T-GA-GTATT--TAGT------AA-----TGT-G--AATGTGG--T--GTATT--ATATCTCACTGCNTTGTAC---A-CAATTTTT---ATTTTCC-TCTCCCCCCCCCCCCTTTTTTTT----TCATT-G-TT-CTA-C-AT-----T-TGTAAGCTG---TCTTGG----TT-GC-T-G--GGA-GT--ACAAGACCAAT-G--GTC----TGG--TG-CT--A--AGCT-GTCACCA------GACTGTT-AACA--GGC---ACCGTCCCTTGG-T--GCTCCCTGCAATCAAGTCA-ACAAN----TCAACATTTTGTA-AA--TATGTG-GTAT-GTATT--AT-TCT--CACTGCATTGTAC-ACA-A--TTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCC-CCTCTTC-AT--G-TTCTAC-AT-TTGNAA-GCTG-TCTTGGTT-GC-T-GGG-A-GTAC-A--AGACCAAT--GGT-TCTGGTG------CT--AGC----T-GTCA------CCAGACTGTTAA--N---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACA-TTTGTTAA-CCCAAATCT--T-GTCAAA-CA-AC-GA--N-TT-TTCAT---T-------A-AATAG--ATG--------TGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGGT-A-ACTTGTCAN-A-ATGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TTATAAA
Reference ( gi|1 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATGATC-TA-CATCTGTACAAGTATTACATTTCATTGCATTGTGCA-C-A--TTTT-TCTTCCTT------------------CGTTGTCT--AAC--------TTTATAC---A------CA----T-GTAAGCTGTCTTGGTT-GC-TGGGA-GTACA--AGACT---AATA---GTCTGGTACTA-CAATT---TAT------TGCCAGACT-GTT-AACA--GGC---A-TTGTCCCTTGG-T--GCTCCCTGCAAT--TCAAGTCAACAAA----TCAACATTT--------TTGTA----AAATTGTTT-TCATTTATAC---AA-TTGATAATTCTTTTAAATCATCCTTAA---------T-GA-GTATT--TAGT------AA-----TGT-G--AATGTGG--T--GTATT--ATATCTCACTGCTTTGTAC---A-TGATTTTT---ATTTTCT-TCTCCCCCCCCCCCTTTTTTTTT----TCATT-G-TT-CTA-C-AT-----T-TGTAAGCTGCTTTCTTGG----TT-GC-T-G--GGA-GT-TACAAGACCAAT-A--GTC----TGG--TG-CT--A--AGTT-GTCACCA------GACTGTT-AACA--GGC---ACCGTCCCTTGG-T--GCTCCCTGCAACCGAGTCA-TCAAA----TCAACATTTTGTA-AA--TATGTG-GTAT-GTAT---AT-TCTAACACTGCATTGTA--ACA-AATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCC-CCCCTTG-AT--A-TTCTAC-AT-TTGAAAAGCTG-TCTTGGTT-GC-T-GGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT--AGC----T-GTCA------CCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACA-TTTGTTAA-CCCAAATCT--T-GTCAAA-CA-AC-GA--C-TT-TTCAT---T-------A-AATAA--GTA--------TGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGGTAA-ACTTGTCAT-A-ACGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TTATAAA
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATGA------CA---ATATAAATATTACATTTCAGTTAATTGTACA-C-G--GTTT-TATTTATT------------------TGCCAT-----GC--------TTTACAC---A------C-------GTAAGCTGTCGTGGTT-GC-TGGGA-GTAAA--AGACC---AACA---GTCTGGTACTA-CAATT---CAT------TACGGGACT-GTT-GACA--GGC---A-CTGATCCTTGG-T--GCT---TG--------AAGTGAACAAT----TCAACA-CT--------TTGTA----CAA---TTT-TCA
gi|2 : aaaTTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATAT-ATAATAGCATCTGTACAAGTATTACATT-----GCATTGTACA-C-A--TTTT--CTTCCTT------------------CGTTGTCG--TAC--------TTTATAC---A------CA----T---AAGTTGTCT-GGTT-GC-TGG-A-GTACA--AGACTTTTACTACAAGTCTGGTACTA-----T---TAT------TGCCAGACTTGTT-AACA--GGC---A-CTGTCCCTTGG-T--GCTCCCTGCAA---TCAAGTCCAAAAA----TCAACATTG--------TTGT-----AAATTGTTT-TCATTTATAC---AATTTGATAATTCTTTTAAATCATCC-TAC---------T-GA-GTATTGGTAGT------ACTT---TGT-GAAAATGTGGTAT--GTATT--A-ATTTCACTGCTTCTTAC---A-T-ATTTTT---AT--------TCCCCCCCCCCC--------T----TCA-T-G-TT-CTAGC-AT-----TGTGTAAGA-----TCTTGG-----T-GC-T-G--GGA-GT-AACAAAACCAAT-G--GTaacttcctttctttcgaaacaact
gi|9 : AAGATGTTTTTGAATTGTGAAATATGAC---A-C-----TACAAGTATTACATT-----ACATTGTACA-C-----TTT-TCTT------------------------TTGTCTTCATG--------TTTATAC---T------------T-GCAAGCTGTCTTGGTT-GC-TGGGA-GGACG--AGACC---AATG---GTCTGGTACTG-CAATT---TATCACCACTTCCAGACT-GTT-AACT--GGC---C-CTGTCCCTTGG-T--ACTCT---CAATCATCAAGCCAACTAT----TCAACACTT--------TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|23 : ggTTTTGAATTATGAAACATGA------CAT-TATATAAGTAGTACATT-----ACATTGTACA-C-A--TTTT-CTTTtat
gi|3 : GTATTATATCTCACTGCATTGTACAGC-AATTTTT-TTTTCCTCTCTCCCCCCCCCCCCCCCCGTTGAAT--A----------TTTCTACG--A------TA----TTGAAAGCAGTCTTGGT--GC-TGGGAAGTACA--AGACC---AATG---TTGCGGTGGTT-TGCTTAGCTGT------CACCAGACT-GTTAAACA--GGCAAAA-ACGTCCCTTGGTT--GCTCCCTGCAA---TCAAGTCAACAAAAAGTTCAACAATT--------tatttttcttcatgtt
gi|14 : tcttatatatcattgagtcactcaaacaacattttgtaaaattatgtgagtatGTATTATACT-CACTGCTTTGTACA-T-AA-TTTTATTTTCCTT------------------CCTCCCCC--AACCTTG----TTTTTTC---ATTCGTTCACCTTT-GTAAGCT-TCTTGGTT-GC-T-GGA-GTAgttaacccaaatcttggtcacaacagactttttcatgaaatagatgtgtgcagatgcgaaatgtgaacaagttattattggataacttgtcataaacgattgtatttttttttctttttctttttttcttttcttatatgttatagaattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|10 : aattgtggtctTACATA-CATTGCATTGTACA-TTA--TTTT-TGTTCAT-----------------------GTTT--AAC------------------A------CT----T-GCAAGCTGTCTTGGTT-GC-TGGAA-ATACA--AGACC---AATG---GTCTGGTTCTA-CAATT---TAT------CACCAGGCT-GTT-AACA--GGC---ACCTG-ACCTTGG-T--GCTCCCTG--ATA-TCATGTCAACAAT----TCAACA--T--------TTGTA----CAATTGTTT-TC
gi|5 : tacgTCACTGCAGTGTACA-C-AATTTTT-TCTGCTCT------------------CTCTCTCC--CCCCTCCCCCCTTGATATTCTA------CA----T-TTCAGCTA-CTTGGTTCGCCTGGGAAGTACACAAGACC---A-TA---GTTTGGTGCTAGC-------TGT------CACCAGATT-GTT-AACCCCGGC---A-CCGTCCCTTGG-T--GCTCCCTGCA----TCAAGTCAACAAT----TCAACATTT--------GT-TAACCCAAATCTTCTGTCA-----AC---AA--CGA-----CTTTT---TCATA---AA---------TAGATGTGTG--CAGTGGCAGAAA-----TGT-G--AACA--------GTATTTGGTAACT---TG--TCATA----A-TGATTGTT---AATTTTT-TTTCTCGTTTTCTCATTGTTTATAAA-TAATT-G-TTGTTA-C-ATGTAACT-TGTTA-CTGCCCCCCTAGGCCCTT-GC-T-GGTGGA-AT-----AAACTAAT-A--
gi|8 : cTT-GC-TGG-A-GTACA--AAGC----AATGAT-GTCTGGTGCTT---AGC---TGT------CACCAGACT-GT--AACA--G-C---A-CCGTCCTT--G-T--GCTCCCTGCA----TCAAGTCAACAAT----TCAACATTG--------TT
gi|7 : GGA-G-ACA--AGA------ATA---GTCTGG-GCTA---GTG---TA---------CCGAACT-GT--AACA--GGC---A-CGGTCCC-TGG-TTAGCT-CCTGCA----TCAAGTAAAT-------TCAACATTTAACCAATCTTTCA----AA---GTTTGTCATCAATACTAAAA-TAGATG--TGT------TCATGCAGAA---------T-GT-GAAGT--TGGT------AAC----TGT-A--AATAT----T--GTATT--aacccaaatcttgtcaacaacgacttttcataaataagtgcgtgcagtgcagaaatgtaacagattgtgaacttgtcataatgattgtaattttttctttctcttttctcattgttataagaa
gi|25 : atattgaaagttctgttctCCTTGG-T--GCTCCCTGCAA---TCGAGTCAACAAttttttttattttttccttttcatgttaataattgtcttgttacatgtaactgtaagtacat
gi|4 : CCTGCAAT---CGAGTCAGCAAA----TCAACATTT--------T-GTA----AAATTGTTT-TCATTTATAC---AA-TTG----------------ACCCTTAC---------A-GA-GTATT--TAGT------AA-----TGTAA--AATGTGG--T--ATG-T--ATATCTCACTACATTGTAC---A-----CTTT---ATT-----------CCCCACCCTT
gi|18 : TTTAAAACACCCTTAAAGGCCTTTCT-GA-GTATT--TAGT------AA-----TGT-G--AA----A--T--GTAT-----ATCTCACTGCATTGTACTACA-TAATC-----------CC-ACCCCCCCCCCgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|3 : TTGAGTCA--CTCAA---------A-CA-ACATT--TTGT------AAAATTATGT-G--AGTATG-------TATT--ATATCTCACTGCATTGTAC---AGCAATTTTT----TTTTCC-TCTCTCCCCCCCCCCCCCCCCGT----TGAAT-ATTT-CTA-CGATA----T-TGAAAGCAG---TCTTGG-----T-GC-T-G--GGA-AG-TACAAGACCAAT----GTTGCGGTGGTTTG-CT--T--AGCT-GTCACCA------GACTGTTAAACA--GGCAAAAACGTCCCTTGGTT--GCTCCCTGCAATCAAGTCA-ACAAAAAGTTCAACAATT
gi|17 : tcttatatatca-GA-GTATT--TAGC------AA-----TGT-G--AATGTGG--TATGTGTT--ATATCTAACTGCTTTGTAC---A-CAATTTTT---ATTTTCT-TCCCCCCCCC----------TTT----TCA-T-G-TT-CTA-C-AT-----T-TGTAgttaacccaaatcttggtcacaacagactttttcatgaaatagatgtgtgcagatgcgaaatgtgaacaagttattattggataacttgtcataaacgattgtatttttttttctttttctttttttcttttcttatatgttatagaattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|14 : TGTGG--TCTGTATT--ATA-CTCACTGCTTTGTAC---A-TAA-TTTT---ATTTTCC-T-TCCTCCCCCAACCTTGTTTTT----TCATTCG-TT-C-A-C-CT-----T-TGTAAGC----TTCTTGG----TT-GC-T----GGA-GT-
gi|5 : aatCTCACTGCAGTGTAC---A-CAATTTTTTCTGCTCTCTCTCTCCCCCCTCCCCCCTT-----------GAT-A-TT-CTA-C-AT-----T-TC--AGCTACTT----GG----TTCGCCT-G--GGAAGTACACAAGACCA-T-A--GTT----TGG--TG-CT--A---GCT-GTCACCA------GATTGTT-AACCCCGGC---ACCGTCCCTTGG-T--GCTCCCTGC-ATCAAGTCA-ACAAT----TCAACATTTa
gi|9 : CTTTTCTTTTGTCTTCAT--G-TT--TA-T-AC-----T-TGCAAGCTG---TCTTGG----TT-GC-T-G--GGA-GG--ACGAGACCAAT-G--GTC----TGG--TA-CTGCA--ATTT-ATCACCACTTCCAGACTGTT-AACT--GGC---CCTGTCCCTTGG-T--ACTCTCAATCATCAAGCCA-ACTAT----TCAACACTTTTTA-gttaacccaaatcttctgtcaacaacgactttttcataaatagatgtgtgcagtggcagaaatgtgaacagtatttggtaacttgtcataatgattgttaattttttttctcgttttctcattgtttataaataattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|6 : ggaagatgtttttgaattgtgaaatatgacactacaagtattacattacattgtacaTTTATTTG----CCAT--G-CT-TTA-C-AC-----A-CGTAAGCTG---TCGTGG----TT-GC-T-G--GGA-GT--AAAAGACCAAC-A--GTC----TGG--TA-CT--AC-AATTCATTACGG------GACTGTT-GACA--GGC---ACTGATCCTTGG-T--GCT---TG-----AAGTGA-ACAAT----TCAACACTTTGTACAA--Tt
gi|10 : aaaatgctcatccaaattagtaagatgattctaaaaagtggaacatgacaatataaatattacatttcagttaattgtacacggttttaTTTTTGT----TCAT--G-TT-TAA-C-AC-----T-TGCAAGCTG---TCTTGG----TT-GC-T-G--GAA-AT--ACAAGACCAAT-G--GTC----TGG--TT-CT--ACAATTT-ATCACCA------GGCTGTT-AACA--GGC---ACCTGACCTTGG-T--GCTCCCTGATATCATGTCA-ACAAT----TCAACA-TTTGTACAA--T-TGTtttcaaacttcctttctttcgaaacaact
gi|7 : tacgtacatacattgcattgtacattaTTCT--G----TT--C-T-G--G-A-G---ACAAGA---AT-A--GTC----TGG---G-CT--A--G--T-GT-ACCG------AACTGT--AACA--GGC---ACGGTCCC-TGG-TTAGCT-CCTGC-ATCAAGT-----AAAT---TCAACATTTtttc
gi|2 : atattgaaagTTGA----TT-GC-CAG--GGA-G----CACCACCAGGGA--GTC-----GG--TGAC------AGCT-AGCACCA------GAC--TT-AATT--GG----------TCTTTG-T--ACTCCA-GCAACCAAG--A-ACAGC----TTAACA-AATGTAGAA--TATGaaccaatctttcaaagtttgtcatcaatactaaaatagatgtgttcatgcagaatgtgaagttggtaactgtaaatattgtattttttttttattttttccttttcatgttaataattgtcttgttacatgtaactgtaagtacat
gi|8 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactct----TT-GC-T-G--G-A-GT--ACAA-AGCAAT-GATGTC----TGG--TG-CT--T--AGCT-GTCACCA------GACTG-T-AACA---GC---ACCGTCCTT--G-T--GCTCCCTGC-ATCAAGTCA-ACAAT----TCAACATTtccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|25 : CCTTGG-T--GCTCCCTGCAATCGAGTCA-ACAAgttaacccaaatcttgtcaacaacgacttttcataaataagtgcgtgcagtgcagaaatgtaacagattgtgaacttgtcataatgattgtaattttttctttctcttttctcattgttataagaa
gi|4 : CCTGCAATCGAGTCA-GCAAA----TCAACATTTTGTA-AA--
gi|3 : GAGTCACTCAAA-----CAACATTTTGTA-AAATTATGTGAGTAT-GTATT--ATATCT--CACTGCATTGTACAGCA-A---TTTTTTTTTC----CTCTCTCCCCCCCCCCCCC-CCCGTTGAAT--ATTTCTACGATATTG-AAAGCAG-TCTTGG-T-GC-T-GGGAA-GTAC-A--AGACCAAT---GT-TGCGGTGGTTTGCTT--AGC----T-GTCA------CCAGACTGTTAAACA---GGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACA-ATTGTTAA-CCCAAATCT--TGGTC--A-CA-ACAGA--CTTT-TTCAT---G-------A-AATAG--ATG--------TGTGCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGATA-ACTTGTCATAA-ACGATTG-TA-----TTTTTTTTTCTTTTTCTTTTTTTC-TTTTCTTATATG-TTATAGAattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|18 : tcttatatatcattATTTAGTA-A-----TGTG-AAAT-GTAT---AT--CT--CACTGCATTGTA--attttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|2 : tttaaaacacccttaaaggcctttctgagtTGTG-AA---ATGTG-GTATTGTATTATAT-TCT--CACTGCATTG----ACA-G--TATTTTTTTTCTC----------CCCCCCCCCAC-TCTC----AT--A-TTCTAC-AT-TTGTTAAGCTGTTCTTGGTT-GC-T--GG-A-GTACAA--AGACCAATTAAG--TCTGGTG------CT--AGC----T-GTCA------CC-GAC----------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATG-TTGTTTAA-TCCAAATCT--T-GTCAAA-CA-AC-GA--G-TT-TGTGT---T-------A----------------------GCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGGTAATTTTTGTCAA-ATATGATTATctacataatcccacccccccccc
gi|4 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaaTGTA-AA---ATGTG-GTAT-GTAT---A--TCT--CACTACATTGTA--a
gi|17 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaaTGTG-AA--T--GTG-GTAT-GTGTT--ATATCTAAC--TGCTTTGTAC-ACA-A----TTTTTATTTTCTTC------------CCCCCC-CCTTTTC-AT--G-TTCTAC-AT-TTGcactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|14 : gagtatttagcaa-AA--T-TGTG-GTCT-GTATT--AT-ACT--CACTGCTTTGTA---CATAATTTTATTTTC---CTTC-----CTCCCCCAACCTTGTTTTTTC-ATTCG-TTC-AC-CT-TTGTAA-GCT--TCTTGGTT-GC-T--GG-A-GTAta
gi|5 : CACTGCAGTGTAC-ACA-A--------TTTTTTCTGCTCTCTCTCTCCCCCCTCC-CCCCTTG-AT--A-TTCTAC-AT-TTCA---GCTA--CTTGGTTCGCCT-GGG-AAGTAC-ACAAGACCA-T--AGT-T-TGGTG------CT--AGC----T-GTCA------CCAGATTGTTAA--CCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GC-ATCAAGTCA-ACAA----TTCA-ACA-TTTGTTAA-CCCAAATCTTCT-GTC-AA-CA-AC-GA--CTTT-TTCA----T-------A-AATAG--ATG--------TGTGCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGGT-A-ACTTGTCAT-A-ATGATTGTTAAT--TTTT---------------TTTCTCGTTTTCTCAT-TGTTTATAAA
gi|9 : ctCTTC-AT--G-TT-TAT-AC-TTGCAA-GCTG-TCTTGGTT-GC-T-GGG-A-GGAC-G--AGACCAAT--GG--TCTGGTA------CT---GCAATTT-ATCACCACTTCCAGACTGTTAA--CT--GGC---CCTGTCCCT--TGG-T--ACTCTCA-ATCATCAAGCCA-ACTA----TTCA-ACA-CTTTTTAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|10 : ggaagatgtttttgaattgtgaaatatgacactacaagtattacattacattgtacacttttcttttgtTTC-AT--G-TTTAAC-AC-TTGCAA-GCTG-TCTTGGTT-GC-T-GGA-A-ATAC-A--AGACCAAT--GGT--CTGGTT------CT--A-CAATTT-ATCA------CCAGGCTGTTAAC-A---GGC---ACCTGACCT--TGG-T--GCTCCCT-GATATCATGTCA-ACAA----TTCA-ACA-TTTGTt
gi|2 : tacgtacatacattgcattgtacattatttttgAC-AT-T--GAATGTTG-GATTGATT-GC-CAGGG-A-GCAC-C--A--CCAGG--GAG-TC-GGTG------AC--AGC----T-AGCA------CCAGAC--TTAA--T---TG-------GT--CT--TTG-T--ACTCCA--GCAACCAAG--A-ACAG----CTTA-ACA-acaattgttttc
gi|7 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatt-TTGAAA----G-TTCTG-TT--C-T-GG--A-G-AC-A--AGA---AT--AGT--CTGG-G------CT--AG-----T-GT-A------CCGAACTGTAAC--A---GGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACA-T---TTAA-CC--AATCT--T--TCAAA--------G--T-TT-GTCAT---CAATACTAA-AATAG--ATG--------TGTTCA---T-GCAG-A---ATGTGAA--------------G-TTGGT-A-ACT----GT-A-AATATTGT--AT--TTTTTTTTTATTTTTTCCTTTTtgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|6 : ataAAGCTG-TCGTGGTT-GC-T-GGG-A-GTAA-A--AGACCAAC--AG--TCTGGTA------CTACAAT----TCATTA------CGGGACTGTTGAC-A---GGC---ACTGATCCT--TGG-T--GCT---T-G-----AAGTGA-ACAA----TTCA-ACACTTTGT--A-C---AATTT-----TCAAA-Ccatgttaataattgtcttgttacatgtaactgtaagtacat
gi|8 : aaaatgctcatccaaattagtaagatgattctaaaaagtggaacatgacaatataaatattacatttcagttaattgtacacggttttatttatttgccatgctttacacacgtTT-GC-T-GG--A-GTAC-A--A-AGCAAT--GATGTCTGGTG------CTT-AGC----T-GTCA------CCAGACTGT-AA--C---AGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACA-TT-GTTAA-CCCAAATCT--T-GTCAA--CA-AC-GA--C-TT-TTCAT-----------A-AATAA--GTG--------CGTGCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTG-TGA-ACTTGTCAT-A-ATGATTG-TAAT--T-------------TTTTCTTTCTC-TTTTCTCAT-TG-TTATAAttcctttctttcgaaacaact
gi|25 : CCT--TGG-T--GCTCCCT-GCAATCGAGTCA-ACAA----gaa
gi|19 : CAATCA---CATATAA----T-CA-ACA-TTTGATAA-CCCAAATCT--T-GTC-AA-CA-AC-GA--G-TTATTCATAACT-------G-AATAG--ATG--------TG-GGA-G-G-GTGGAA---A
gi|15 : A-ACAA----TGCA-TCA-TTTGTTAAGTCCAAATCT--G-GTC-AA-CA-AC-GAGGG-TT-ATCAG---T-------ATAATAATTGTATATAGATGTGTGCAGG-C-GCAGAGAACATGTGAT-----ACAgggt
gi|4 : caa-ACAA----TTCA-ACA-TTTGTTAA-CCCAAATCT--A-GTC-AA-CA-AT-GA--G-TC-T-------------------------TG--------TGTGCA-A-T-GCAGAA---ATGTG-A-----ACAG-----A-TGCGT-A-ACTTGTCA--A-AC-ACTG---AT--TATTATTTTTTTTTCTT---------CTTTCTCAC-TG-TTATAAAcag
gi|12 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTCAGACA-TATGTTAA-CCCAAATCT--T-GTCAA--CA-AC-GAG-T-TT-TTCAT-----------A-AATAG--ATG--------TGTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGGT-A-ACTTGTCAA-A-ATGATTGTTA-------------TTTTATTTTTTTCTTC-TTTTCTCAT-TG-TTAAAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|20 : -ACA-TGTATAAA-TCTAAATCT--T-GTCAA--CACAC-GT--G-TA-TT--T---T-------A---------TG--------TGTGCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTtaa
gi|11 : atttttatcgtTGTTCA-CCAAAGGGT--T-ATCGAATCA-GC-GA--C-------AA---T-------ATAATA----TG--------TGTGCA-G-T-GCAGAA---ATATG-A-----ACAG----T----------ACTTGTCAA-A-ATGATT-----T--TTTTTTCT
gi|21 : tg-TT-TTCATA--T-------A-TATAG--ACG--------TTTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAGT---ACTTGTCAA-A-ATGATTGTTAATAATTTTTcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : tATAA--TTG--------TGTGCA-G-T-GCAGAA---ATGTGAACACTTACAG----T----------ACTTGTCAA-A-ATGATT----AT--TTTTTTTCT
gi|16 : atgcgttcaccaaagggatatcgaatcgtA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGGT-A-ACT-------------------AT--TTTCT------------TTTTCTTC-TTTTATCAT-TG-TTATAAAcattgttataattaatt
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 44444444444444 22222 222 444444444444444444444444 11 22222222 11 111111 1 1 5555555 11 3333333333 11 222222 11 11111 4444444 2 3333 1 2 1 111 1 1 555555555555555 22 2 22 222 1 1 33 11 1 11 333333333 2222 1 1 11 111 11 2222222222 222222222 111 111 1 11111 111 333333333333333333 11111111 1111111 5555555555555555555
lowQualScore : 1 2 1 77777777777777 88888 999 0 444444444444444444444444 1 44 1 1 6 44444444 33 6 66 999999 6 2 1 44 5 5 5 0 3 0 6 7777777 0 8 1 11 0 7777777777 99 99 6 55 888888 1 5 1 5 00 1 1 11111 2 5555555 0 8 0 8 8 8 2 4444 3 5 0 3 999 5 5 333333333333333 77 0 1 11 7 88 555 3 3 7 11 33 999 0 33 000000000 0 2 3 4444 4 0 8 66 8 666 0 6 6 33 6 6 99 2 3333333333 99 6 6 1 555555555 111 666 6 99 6 2 4 9999 3 3 44 3 11111 3 555 3 3 3 666666666666666666 44 2 2 5 444 55555555 1111111 333 44 55 6 3 6666666666666666666 0 5 5 5
lowQualScore : . . . .............. ..... ... . ........................ . .. . . . ........ .. . .. ...... . . . .. . . . . . . . ....... . . . .. . .......... .. .. . .. ...... . . . . .. . . ..... . ....... . . . . . . . .... . . . . ... . . ............... .. . . .. . .. ... . . . .. .. ... . .. ......... . . . .... . . . .. . ... . . . .. . . .. . .......... .. . . . ......... ... ... . .. . . . .... . . .. . ..... . ... . . . .................. .. . . . ... ........ ....... ... .. .. . . ................... . . . .
lowQualScore : 0 3 0 88888888888888 00000 777 7 888888888888888888888888 7 00 0 0 7 22222222 55 7 88 222222 7 5 0 22 0 0 6 6 2 0 0 2222222 2 0 0 00 8 4444444444 22 22 7 88 000000 4 7 0 7 77 6 7 00000 5 6666666 4 0 8 0 0 0 5 0000 2 0 0 3 000 5 5 555555555555555 55 0 0 00 3 33 777 3 3 3 77 88 000 0 88 555555555 8 2 2 0000 5 0 0 88 0 888 8 7 7 33 7 7 22 5 2222222222 22 7 7 7 777777777 777 555 7 22 7 0 4 4444 6 3 66 3 55555 3 555 1 1 1 888888888888888888 22 7 7 3 777 33333333 5555555 777 66 55 7 3 4444444444444444444 2 7 7 7
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-TGCATTGTACACA-TTTTTCTTCC---------TTCGTCGTC-TANCTTTATACAC-TGTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCACTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAAT--TCTTTTA-AATC--ACCCTTAC---------TGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGC--TCTTGGTTGCTGGGAGT-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATA-TCT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTT---NATATTCTAC-AT-TTG-AAA-GCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TC--TGG--TGC-T-AGCTGTCACCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAAC-GA--GTT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TTATAAA
Reference ( family-2446 ) : ATNCTCATCCAAATTAGCAAGATGATTTTGAATNGTGGAACATG--AC--A-CAT-TATACAAGTATTACATTTCACTGCATTGTACACAATTTTTCTTCC---------TTCGTCGTC-TANCTTTATACACATGTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTGCTACGATTTATCA------CCAGACT-GTTAACAGGCACCGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAATTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TCGATG----TCTTTTA-AATC--ATCCTTAA---------TGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTTTTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTG---TCTTGGTTGCTGGGAGT-AC-AAGACCAAT--GGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAATCAAGTCAA-CAANTCAACATTTTGTAAA--TATGTG-GTAT-GTATTAT--TCT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCTCTT---CATGTTCTAC-AT-TTG-NAA-GCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--GGT-TC--TGG--TGC-T-AGCTGTCACCAGACTGTTAA--N---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAAC-GA--NTT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-NA-A-TGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TTATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG--ATCTA-CATCTGTACAAGTATTACATTTCATTGCATTGTGCACA-TTTTTCTTCC---------TTCGTTGTC-TAACTTTATACACATGTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCATTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAAT--TCTTTTA-AATC--ATCCTTAA---------TGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTTTTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTTAC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTAT-AT--TCTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTT---GATATTCTAC-AT-TTG-AAAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TC--TGG--TGC-T-AGCTGTCACCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAAC-GA--CTT-T-T-CA-T---TA-A---------ATAAGTATGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-TAAA--CTTGTCA-TA-A-CGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TTATAAA
gi|10 : TACATA-CATTGCATTGTACATTATTTTTGTTC---------------------ATGTTTA-ACACTTGCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTGACCTTGGTGCTCCCTGATAT-CAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tacgTGTTCA-CCAAAGGGT--T-ATCGA-ATCAGC-GA----------CA-A---TATA---------ATA--TGTGTGCA-G-T-GCAGAA---ATATG-A-----ACAG----T----------A--CTTGTCA-AA-A-TGATT-----T--TTTTTTCT
gi|12 : tgTCAGACATATGTTAA-CCCAAATCT--T-GTCAA---CAAC-GA--GTT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA------CAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTA-------------TTTTATTTTTTTCTTC-TTTTCTCAT-TG-TTAAAAAcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGTGCA-G-T-GCAGAA---ATGTGAACACTTACAG----T----------A--CTTGTCA-AA-A-TGATT----AT--TTTTTTTCTtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgtTGTGG---TCTGTATTATA--CTCACTGCTTTGTAC-ATAATTTT-ATTTTCCT-TCCTCCCCCAACCTTGTTTTTTCATTCGTTC-A-CCTT-TG-TAAGCT----TCTTGGTTGCT-GGAGT-Acattgttataattaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCT--G-GTC-A-A-CAAC-GAGGGTT-A-T-CAGTA--TA-ATAATTGTATATAGATGTGTGCAGG-C-GCAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CT--------------------AT--TT------------TCTTTTTCTTC-TTTTATCAT-TG-TTATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AATGTGG---TATGTGTTATA-TCTAACTGCTTTGTAC-ACAATTTTTATTTTCTTCCCCCCCCC----------TTTTCA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTTA-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-ATG-----------TATA-TCTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCT--T-GTC-A-A-CAAC-GA--GTTAT-T-CA-TAACTG-A---------ATAGATGTG-GGA-G-G-GTGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAAT--AGCATCTGTACAAGTATTACATT-----GCATTGTACACA--TTTTCTTCC---------TTCGTTGTCGTA-CTTTATACACAT--AAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCACTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAAT--TCTTTTA-AATC--ATCC-TAC---------TGAGTATTGGTAGTACTTTGT-GAAAATGTGGTA-T--GTATTA-A-TTTCACTGCTTCTTAC-AT-ATTTTTAT-------TCCCCCCCCCCC--------TTCA-T-GTTCTAGCATTGTG-TAAG--A---TCTTGG-TGCTGGGAGTAAC-AAAACCAAT--GGTgggt
gi|2 : GTATTA-ATTTCACTGCTTCTTACATA-TTTTTATTCCCCCCCCCCCTTCATGTTC-TAGCATTGT------GTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTAC---------TGAGTATT--TAGTAA--TGT-GA-AATGTGGTATT--GTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCAC------TCTCA-T-ATTCTA-CATT-TGTTAAGCTGT--TCTTGGTTGCT-GGAGT-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCT------------CCCCCCCCCCACTC-T---CATATTCTAC-AT-TTGTTAA-GCTGTTCTTGGTT-GC-T-GG-A-GTACAA--AGACCAATTAAG--TC--TGG--TGC-T-AGCTGTCACC-GAC----------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCT--T-GTCAA-A-CAAC-GA--GTT-T-G-TG-T---TA---------------------GCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGG-T-AATTTTTGTCA-AATA-TGATTATtccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCT--T-GTCAACA-CA-C-GT--GTA-T-T----T---TA----------------TGTGTGCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTa
gi|21 : atttttatcgtTT-T-T-CA-TA--TA-T---------ATAGACGTTTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAG-T--A--CTTGTCA-AA-A-TGATTGTTAATAATTTTT
gi|23 : tTTTTGAATTATGAAACATG------A-CAT-TATATAAGTAGTACAT-----TACATTGTACACA--TTTTCTT
gi|25 : CCTTGGTGCTCCCTGCAAT-CGA-GTCAACAAttatttttcttcatgtt
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATA-TCT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATAT-TTCTACGATATTG-AAA-GCAG-TCTTGG-T-GC-TGGGAA-GTAC-A--AGACCAAT--GTT-GCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAACA---GGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCT--TGGTC---A-CAACAGAC-TTT-T-T-CA-T---GA-A---------ATAGATGTGTGCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGAT-AA--CTTGTCATAA-A-CGATTG-TA-----TTTTTTTTTCTTTTTCTTTTTTTC-TTTTCTTATATG-TTATAGA
gi|4 : tcttatatatcCCTGCAAT-CGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTAC---------AGAGTATT--TAGTAA--TGTAA--AATGTGG---T--ATG-TATA-TCTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--A-GTCAA---CAAT-GA--GTC-T-T---------------------------GTGTGCA-A-T-GCAGAA---ATGTGAA------CAG-----A-TGCG-T-AA--CTTGTCA-AACACTGATTATTA------------TTTTTTTTTCTT------CTTTCTCAC-TG-TTATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTT---GATATTCTAC-AT-TTC---A-GCTA--CTTGGTTCGCCTGGG-AAGTAC-ACAAGACCA-T--AGT-T---TGG--TGC-T-AGCTGTCACCAGATTGTTAA--CCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCT-GTC-A-A-CAAC-GAC-TTT-T-T-CA-----TA-A---------ATAGATGTGTGCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTGTTAA-----------------TTTTTTTTCTCGTTTTCTCAT-TGTTTATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG--AC--A------ATATAAATATTACATTTCAGTTAATTGTACACGGTTTT-ATTTA---------TTTGCCAT----GCTTTACACAC--GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCACTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaa-TTG-AAA-GTT---CT--GTT--C-TGG--A-G-AC-A--AGA---AT--AGT--C--TGG---GC-T-AG-TGT-ACCGAACTGTAAC--A---GGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCT--T--TCAA-A----------GTT-TGT-CA-T---CA-ATACTAAA--ATAGATGTGTTCA---T-GCAG-A---ATGTGAA--------------G-TTGG-T-AA--C-TGT---AA-A-T-ATTGT--AT--TTTTTTTTTATTTTTTCCTTTTaacttcctttctttcgaaacaact
gi|8 : ataTT-GC-TGG--A-GTAC-A--A-AGCAAT--GATGTC--TGG--TGC-TTAGCTGTCACCAGACTGT-AA--C---AGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCT--T-GTCAA---CAAC-GA--CTT-T-T-CA-T----A-A---------ATAAGTGCGTGCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTGT-G-AA--CTTGTCA-TA-A-TGATTG-TAA---------------TTTTTTCTTTCTC-TTTTCTCAT-TG-TTATAAcatgttaataattgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG--AC--A-C-----TACAAGTATTACATT-----ACATTGTACAC---TTTTCTT------------TTGTCTTC--ATGTTTATACT--TGCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCCCTGTCCCTTGGTACTCTCAATCAT-CAA-GCCAACTATTCAACACTTTTgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 11 333333333 444444 444444444444444444444444 222 22222222 11 111111 1 1 1111 11 333333333 11 222222 11 11111 4444444 2 11 1 111 1 11 1 1 555555555555555 11 1 11 222 1 1 1 11 1 11 111111111 11 1 1 1 111 11 11111111 111111 2222222 111 111 11111 111111 333333333333333333 11111111 1111111 77777777777777777777
lowQualScore : 2 1 11 999999999 999999 55 33 444444444444444444444444 1 3 444 1 1 6 44444444 33 0 999999 6 6 5 44 5 5 3 0 3 0 3 4444 1 11 0 222222222 99 99 6 55 888888 1 5 1 5 00 1 1 11111 2 3333333 8 0 8 0 8 8 8 2 99 33 3 5 111 3 88 5 5 333333333333333 77 5 44 7 7 0 555 3 3 7 7 0 33 999 0 33 999999999 0 0 2 2 11 0 0 8 6 0 666 0 6 6 33 6 6 99 2 11111111 999999 6 1 5555555 111 666 6 99 6 5 4 9999 3 3 44 3 11111 333333 3 3 3 666666666666666666 44 2 2 5 444 22222222 2222222 333 44 3 6 3 44444444444444444444 0 5 5 5 5
lowQualScore : . . .. ......... ...... .. .. ........................ . . ... . . . ........ .. . ...... . . . .. . . . . . . . .... . .. . ......... .. .. . .. ...... . . . . .. . . ..... . ....... . . . . . . . . .. .. . . ... . .. . . ............... .. . .. . . . ... . . . . . .. ... . .. ......... . . . . .. . . . . . ... . . . .. . . .. . ........ ...... . . ....... ... ... . .. . . . .... . . .. . ..... ...... . . . .................. .. . . . ... ........ ....... ... .. . . . .................... . . . . .
lowQualScore : 0 4 00 666666666 999999 99 11 888888888888888888888888 7 2 777 0 0 7 22222222 55 2 222222 7 7 2 22 0 0 0 6 2 0 2 8888 0 00 8 000000000 22 22 7 88 000000 4 7 0 7 77 6 7 00000 5 4444444 0 4 0 8 0 0 0 5 00 88 2 0 000 3 33 5 5 555555555555555 55 0 33 3 3 7 777 3 3 3 3 0 88 000 0 88 888888888 8 2 5 5 00 0 0 0 0 8 888 8 7 7 33 7 7 22 5 00000000 222222 7 7 3333333 777 555 7 22 7 0 4 4444 6 3 66 3 55555 777777 1 1 1 888888888888888888 22 7 7 3 777 99999999 2222222 777 66 3 7 3 55555555555555555555 2 0 0 0 0
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTT-GATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAAT--TTTTTT--TTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TT-ATAAA
Reference ( family-2446 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTCTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGCT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTT-NATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TT-ATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG--ATCTA-CATCTGTACAAGTATTACATTTCA-TTGCATTGTGCAC-ATTTTTCTTCC---------TTCGTTGTC-TAACTTTATACACAT-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCA-TTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ATCCTTA---------ATGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTT-TTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTT-AC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTA-TAT-T-CTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTT-GATA-TTCTAC-AT-TTGAAAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--C---TT-T-T-CA-T---TA-A---------ATAAGTATGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-TAAA--CTTGTCA-TA-A-CGATTGTTAAT--TTTTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TT-ATAAA
gi|10 : GTACA-----TACATT------GCATTGTACATTATTTTTGTTC---------------------ATGTTTA-ACAC-TTGCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTG-ACCTTGGTGCTCCCTGATAT-CAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tacTGTTCA-CCAAAGGGT--T-ATCGA-ATCAGCGA-------------CA-A---TATA---------ATA--TGTGTGCA-G-T-GCAGAA---ATATG-A-----ACAG----T----------A--CTTGTCA-AA-A-TGATT-----T--TTTTTTCT
gi|12 : tgTCAGACATATGTTAA-CCCAAATCT--T-GTCAA---CAACGA--G---TT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA------CAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTA-------------TTTTATTTTTTTCTTC-TTTTCTCAT-TG-TT-AAAAAcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGTGCA-G-T-GCAGAA---ATGTGAACACTTACAG----T----------A--CTTGTCA-AA-A-TGATT----AT--TTTTTTTCTtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgtTGTGG---TCTGTATTATA--CTCACTGCTTTGTAC-ATAATTTT-ATTTTCCT-TCCTCCCCCAACCTTGTTTTTT-CATTCGTTC-A-CCTT-TG-TAAGCT--T--CTTGGTTGCT-GGAG-T-Acattgttataattaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCT--G-GTC-A-A-CAACGAGGG---TT-A-T-CAGTA--TA-ATAATTGTATATAGATGTGTGCAGG-C-GCAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CT--------------------AT--TT------------TCTTTTTCTTC-TTTTATCAT-TG-TT-ATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AATGTGG---TATGTGTTATA-TCTAACTGCTTTGTAC-ACAATTTTTATTTTCTTCCCCCCCCC----------TTTT-CA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTT--A-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-ATG-----------TATA-TCTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCT--T-GTC-A-A-CAACGA--G---TTAT-T-CA-TAACTG-A---------ATAGATGTG-GGA-G-G-GTGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAAT--AGCATCTGTACAAGTATTACATT------GCATTGTACAC-ATTTT-CTTCC---------TTCGTTGTCGTA-CTTTATACAC---ATAAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAATTCTTTT--A-AATC--ATCC-TA---------CTGAGTATTGGTAGTACTTTGT-GAAAATGTGGTA-T--GTATTA-A-TTTCACTGCTTCTTAC-AT-ATTTTTAT-------TCCCCCCCCCCC--------TT-CA-T-GTTCTAGCATTGTG-TAA---GAT--CTTGG-TGCTGGGAG-TAAC-AAAACCAAT--GGTgggt
gi|2 : GTATTA-ATTTCACT-GCTTCTTACAT-ATTTTTATTCCCCCCCCCCCTTCATGTTC-TAGCATTGT-------GTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTA---------CTGAGTATT--TAGTAA--TGT-GA-AATGTGGTATT--GTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCAC------TCT-CA-T-ATTCTA-CATT-TGTTAAGCTGTT--CTTGGTTGCT-GGAG-T-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCTCC---------CCCCCCCCACTC----T-CATA-TTCTAC-AT-TTGTTAAGCTGTTCTTGGTT-GC-T-GG-A-GTACAA--AGACCAATTAAG--TCTGGTG------CT-AGCTGTCACC-GAC--------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-G-TG-T---TA---------------------GCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGG-T-AATTTTTGTCA-AATA-TGATTATtccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCT--T-GTCAACA-CA-CGT--G---TA-T-T----T---TA----------------TGTGTGCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTa
gi|21 : atttttatcgt---TT-T-T-CA-TA--TA-T---------ATAGACGTTTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAG-T--A--CTTGTCA-AA-A-TGATTGTTAATAATTTTT
gi|23 : tTTTTGAATTATGAAACATG--AC--A-T---TATATAAGTAGTACATT------ACATTGTACAC-ATTTTCTTT
gi|25 : CCTTGGTGCTCCCTGCAAT-CGA-GTCAACAAtatttttcttcatgtt
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATAT-CT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATATTTCTACGATATTG-AAAGCAG-TCTTGG-T-GC-TGGGAA-GTAC-A--AGACCAAT---GT-TGCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAAC-AGGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCT--TGGTC---A-CAAC-A--GACTTT-T-T-CA-T---GA-A---------ATAGATGTGTGCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGAT-AA--CTTGTCATAA-A-CGATTG-TA-----TTTTTTTTTCTTTTTCTTTTTTTC-TTTTCTTATATG-TT-ATAGA
gi|4 : tcttatatatcCCTGCAAT-CGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTA---------CAGAGTATT--TAGTAA--TGTAA--AATGTGG---T--ATG-TATA-TCTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--A-GTCAA---CAATGA--G---TC-T-T---------------------------GTGTGCA-A-T-GCAGAA---ATGTGAA------CAG-----A-TGCG-T-AA--CTTGTCA-AACACTGATTATTA------------TTTTTTTTTCTT------CTTTCTCAC-TG-TT-ATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTT-GATA-TTCTAC-AT-TTC-A--GCTA--CTTGGTTCGCCTGGG-AAGTAC-ACAAGACCA-T--AGT-T-TGGTG------CT-AGCTGTCACCAGATTGTTAACCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GC-ATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCT-GTC-A-A-CAACGAC-T---TT-T-T-CA-----TA-A---------ATAGATGTGTGCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTGTTAA-----------------TTTTTTTTCTCGTTTTCTCAT-TGTTT-ATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG--AC--A------ATATAAATATTACATTTCAGT-TAATTGTACAC-GGTTTTATTTA---------TTTGCCAT----GCTTTACACAC---GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCA-CTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaa-TTG-AAAGTT---CT--GTT--C-TGG--A-G-AC-A--AGA---AT--AGT--CTGG-G------CT-AG-TGT-ACCGAACTGTAAC---AGGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCT--T--TCAA-A---------G---TT-TGT-CA-T---CA-ATACTAAA--ATAGATGTGTTCA---T-GCAGAA----TGTGAA-----G----------TTGG-T-AA--CT-GT---AA-A-T-ATTGT--AT--TTTTT-------TTTTATTTTTTCC-TTT--TCA--TG-TTAATAAaacttcctttctttcgaaacaact
gi|8 : ataTT-GC-TGG--A-GTAC-A--A-AGCAAT--GATGTCTGGTG------CTTAGCTGTCACCAGACTGT-AA---CAGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCT--T-GTCAA---CAACGA--C---TT-T-T-CA-T----A-A---------ATAAGTGCGTGCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTGT-G-AA--CTTGTCA-TA-A-TGATTG-TAA---------------TTTTTTCTTTCTC-TTTTCTCAT-TG-TT-ATAAttgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG--AC--A-C-----TACAAGTATTACATT------ACATTGTACAC---TTTTCTT------------TTGTCTTC--ATGTTTATAC-T-T-GCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCC-CTGTCCCTTGGTACTCTCAATCAT-CAA-GCCAACTATTCAACACTTTTgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 11 333333333 444444 33333333333333333333333 222 22222222 11 111111 1 1 1111 11 333333333 11 222222 11 11111 4444444 2 11 1 111 1 11 1 1 555555555555555 11 1 11 222 1 1 1 11 1 11 222222222 1 1 1 1 111 11 11111111 111111 222222222 111 111 1 111 111111 3333333333333333 11111111 4444444444444444444444
lowQualScore : 2 1 11 999999999 999999 55 11 88888888888888888888888 1 3 444 1 1 6 44444444 33 0 999999 6 6 5 44 5 5 3 0 3 0 3 4444 1 11 0 222222222 99 99 6 55 888888 1 5 1 5 00 1 1 11111 2 3333333 8 0 8 0 8 8 8 2 77 33 3 5 111 3 88 5 5 333333333333333 77 5 44 7 7 0 555 3 3 7 7 0 33 999 0 33 222222222 0 3 0 0 0 8 6 0 666 0 6 6 33 6 6 99 2 11111111 999999 6 1 555555555 111 666 6 99 6 2 4 9999 3 3 77 4 444 000000 3 3 6 3 8888888888888888 44 2 2 2 2 444 22222222 999999 3 333 44 3 6 3 1111111111111111111111 2 5 5 5 5
lowQualScore : . . .. ......... ...... .. .. ....................... . . ... . . . ........ .. . ...... . . . .. . . . . . . . .... . .. . ......... .. .. . .. ...... . . . . .. . . ..... . ....... . . . . . . . . .. .. . . ... . .. . . ............... .. . .. . . . ... . . . . . .. ... . .. ......... . . . . . . . . ... . . . .. . . .. . ........ ...... . . ......... ... ... . .. . . . .... . . .. . ... ...... . . . . ................ .. . . . . ... ........ ...... . ... .. . . . ...................... . . . . .
lowQualScore : 0 4 00 666666666 999999 99 11 33333333333333333333333 7 2 777 0 0 7 22222222 55 2 222222 7 7 2 22 0 0 0 6 2 0 2 8888 0 00 8 000000000 22 22 7 88 000000 4 7 0 7 77 6 7 00000 5 4444444 0 4 0 8 0 0 0 5 00 88 2 0 000 3 33 5 5 555555555555555 55 0 33 3 3 7 777 3 3 3 3 0 88 000 0 88 000000000 8 2 0 0 0 0 0 8 888 8 7 7 33 7 7 22 5 00000000 222222 7 7 333333333 777 555 7 22 7 0 4 4444 6 3 99 5 000 444444 1 1 2 1 9999999999999999 22 7 7 7 7 777 99999999 222222 1 777 66 3 7 3 2222222222222222222222 1 0 0 0 0
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTT--GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-G-CAGAA---ATGTGAA-----ACAG----TATT-GG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTC-TTTTCTCAT-TG-TT-ATAAA
Reference ( family-2446 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTT--GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-G-CAGAA---ATGTGAA-----ACAG----TATT-GG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TT-ATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG--ATCTA-CATCTGTACAAGTATTACATTTCA-TTGCATTGTGCAC-ATTTTTCTTCC---------TTCGTTGTC-TAACTTTATACACAT-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCA-TTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ATCCTTA---------ATGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTT-TTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTT-AC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTA-TAT-T-CTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTGAAAAGCTG-TCTTGGTT-GC-TGGG-A-GTAC-A--AGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA--A---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTT--GTCAA-A-CAACGA--C---TT-T-T-CA-T---TA-A---------ATAAGTATGTGCA-G-T-G-CAGAA---ATGTGAA-----ACAG----TATT-GG-TAAA--CTTGTCA-TA-A-CGATTGTTAATTT--TTTTTTTTTTTTTTTTTTTTTTC-TTTTCTCAT-TG-TT-ATAAA
gi|10 : GTACA-----TACATT------GCATTGTACATTATTTTTGTTC---------------------ATGTTTA-ACAC-TTGCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTG-ACCTTGGTGCTCCCTGATAT-CAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tacTGTTCA-CCAAAGGGTT--ATCGA-ATCAGCGA-------------CA-A---TATA---------ATA--TGTGTGCA-G-T-G-CAGAA---ATATG-A-----ACAG----T----------A--CTTGTCA-AA-A-TGATT-------T--TTTTTTCT
gi|12 : tgTCAGACATATGTTAA-CCCAAATCTT--GTCAA---CAACGA--G---TT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-G-CAGAA---ATGTGAA------CAG----TATT-GG-T-AA--CTTGTCA-AA-A-TGATTGTTA-------------TTTTATTTTTTTCTTC-TTTTCTCAT-TG-TT-AAAAAcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGTGCA-G-T-G-CAGAA---ATGTGAACACTTACAG----T----------A--CTTGTCA-AA-A-TGATT----A--T--TTTTTTTCTtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgtTGTGG---TCTGTATTATA--CTCACTGCTTTGTAC-ATAATTTT-ATTTTCCT-TCCTCCCCCAACCTTGTTTTTT-CATTCGTTC-A-CCTT-TG-TAAGCT--T--CTTGGTTGCT-GGAG-T-Acattgttataattaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCTG--GTC-A-A-CAACGAGGG---TT-A-T-CAGTA--TA-ATAATTGTATATAGATGTGTGCAGG-C-G-CAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-G-CAGAA---ATGTG-A-----ACAG----TATT-GG-T-AA--CT-------------ATT---------------------TTCTTTTTCTTC-TTTTATCAT-TG-TT-ATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AATGTGG---TATGTGTTATA-TCTAACTGCTTTGTAC-ACAATTTTTATTTTCTTCCCCCCCCC----------TTTT-CA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTT--A-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-ATG-----------TATA-TCTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCTT--GTC-A-A-CAACGA--G---TTAT-T-CA-TAACTG-A---------ATAGATGTG-GGA-G-G-G-TGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAAT--AGCATCTGTACAAGTATTACATT------GCATTGTACAC-ATTTT-CTTCC---------TTCGTTGTCGTA-CTTTATACAC---ATAAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAATTCTTTT--A-AATC--ATCC-TA---------CTGAGTATTGGTAGTACTTTGT-GAAAATGTGGTA-T--GTATTA-A-TTTCACTGCTTCTTAC-AT-ATTTTTAT-------TCCCCCCCCCCC--------TT-CA-T-GTTCTAGCATTGTG-TAA---GAT--CTTGG-TGCTGGGAG-TAAC-AAAACCAAT--GGTgggt
gi|2 : GTATTA-ATTTCACT-GCTTCTTACAT-ATTTTTATTCCCCCCCCCCCTTCATGTTC-TAGCATTGT-------GTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTA---------CTGAGTATT--TAGTAA--TGT-GA-AATGTGGTATT--GTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCAC------TCT-CA-T-ATTCTA-CATT-TGTTAAGCTGTT--CTTGGTTGCT-GGAG-T-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCTC----------CCCCCCCCCACTCTC----ATA-TTCTAC-AT-TTGTTAAGCTGTTCTTGGTT-GC-T-GG-A-GTACAA--AGACCAATTAAG--TCTGGTG------CT-AGCTGTCACC-GAC----------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCTT--GTCAA-A-CAACGA--G---TT-T-G-TG-T---TA---------------------GCA-G-TAG-CAGAA---ATGTGAA-----TCA------AAT-GG-T-AATTTTTGTCA-AATA-TGATTATtccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCTT--GTCAACA-CA-CGT--G---TA-T-T----T---TA----------------TGTGTGCA-T-T-G-CAGAA---ATGTG-A-----ACAG----TATT-a
gi|21 : atttttatcgt---TT-T-T-CA-TA--TA-T---------ATAGACGTTTGCA-G-T-G-CAGAA---ATGTG-A-----ACAG----TATT-AG-T--A--CTTGTCA-AA-A-TGATTGTTAA--TAATTTTT
gi|23 : tTTTTGAATTATGAAACATG--AC--A-T---TATATAAGTAGTACATT------ACATTGTACAC-ATTTTCTTT
gi|25 : CCTTGGTGCTCCCTGCAAT-CGA-GTCAACAAtatttttcttcatgtt
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATAT-CT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATATTTCTACGATATTG-AAAGCAG-TCTTGG-T-GC-TGGGAA-GTAC-A--AGACCAAT---GT-TGCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAACA---GGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCTTG-GTC---A-CAAC-A--GACTTT-T-T-CA-T---GA-A---------ATAGATGTGTGCA-GAT-G-C-GAA---ATGTGAA-----CAAGTTATTATT-GGAT-AA--CTTGTCATAA-A-CGATTGT--A--T--TTTTTTTTCTTTTTCTTTTTTTC-TTTTCTTATATG-TT-ATAGA
gi|4 : tcttatatatcCCTGCAAT-CGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTA---------CAGAGTATT--TAGTAA--TGTAA--AATGTGG---T--ATG-TATA-TCTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCTA--GTCAA---CAATGA--G---TC-T-T---------------------------GTGTGCA-A-T-G-CAGAA---ATGTG-A-----ACAG-----ATG-CG-T-AA--CTTGTCA-AACACTGATTATTA----------------TTTTTTTTTCTTC--TTTCTCAC-TG-TT-ATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTTG-ATA-TTCTAC-AT-TTC-A--GCTA--CTTGGTTCGCCTGGG-AAGTAC-ACAAGACCA-T--AGT-T-TGGTG------CT-AGCTGTCACCAGATTGTTAA--CCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCTGTCAA---CAACGA--C---TT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-GGCAGAA---ATGTGAA------CAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTGTTAA--T--TTTT-------------TTTCTCGTTTTCTCAT-TGTTT-ATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG--AC--A------ATATAAATATTACATTTCAGT-TAATTGTACAC-GGTTTTATTTA---------TTTGCCAT----GCTTTACACAC---GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCA-CTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaa-TTG-AAAGTT---CT--GTT--C-TGG--A-G-AC-A--AGA---AT--AGT--CTGG-G------CT-AG-TGT-ACCGAACTGTAAC--A---GGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCTT---TCAA-A---------G---TT-TGT-CA-T---CA-ATACTAAA--ATAGATGTGTTCA---T-G-CAGAA----TGTGAA-----G---------TT-GG-T-AA--CT-GT---AA-A-T-ATTGT--A--T--TTTTT-----TTTTATTTTTTCC-TTT--TCA--TG-TTAATAAaacttcctttctttcgaaacaact
gi|8 : ataTT-GC-TGG--A-GTAC-A--A-AGCAAT--GATGTCTGGTG------CTTAGCTGTCACCAGACTGT-AA--C---AGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCTT--GTCAA---CAACGA--C---TT-T-T-CA-T----A-A---------ATAAGTGCGTGCA-G-T-G-CAGAA---ATGT--A-----ACAG-----ATT-GT-G-AA--CTTGTCA-TA-A-TGATTGT-AA--T--TTTTTCTTTCT-----------C-TTTTCTCAT-TG-TT-ATAAttgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG--AC--A-C-----TACAAGTATTACATT------ACATTGTACAC------TTTTCT---------TTTGTCTTC--ATGTTTATAC-T-T-GCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCC-CTGTCCCTTGGTACTCTCAATCAT-CAA-GCCAACTATTCAACACTTTTgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 11 333333333 444444 33333333333333333333333 222 22222222 11 111111 1 1 1111 11 333333333 11 222222 11 11111 4444444 2 11 1 111 1 11 1 1 555555555555555 11 1 11 222 1 1 1 11 1 11 222222222 1 1 1 11 111 111 22 11111111 111111 2222222 111 111 11111 111111 333333333333333333 1 1111111 55555555555555555555
lowQualScore : 2 1 11 999999999 999999 55 11 88888888888888888888888 1 3 444 1 1 6 44444444 33 0 999999 6 6 5 44 5 5 3 0 3 0 3 4444 1 11 0 222222222 99 99 6 55 888888 1 5 1 5 00 1 1 11111 2 3333333 8 0 8 0 8 8 8 2 77 33 3 5 111 3 88 5 5 333333333333333 77 5 44 7 7 0 555 3 3 7 7 0 33 999 0 33 222222222 0 3 0 0 0 8 77 666 0 111 00 99 6 2 3 11111111 999999 6 1 5555555 111 666 6 99 6 5 4 9999 3 3 44 3 11111 333333 3 3 3 666666666666666666 44 2 2 5 444 3 77777 2222222 333 44 3 6 3 55555555555555555555 5 5 5
lowQualScore : . . .. ......... ...... .. .. ....................... . . ... . . . ........ .. . ...... . . . .. . . . . . . . .... . .. . ......... .. .. . .. ...... . . . . .. . . ..... . ....... . . . . . . . . .. .. . . ... . .. . . ............... .. . .. . . . ... . . . . . .. ... . .. ......... . . . . . . .. ... . ... .. .. . . . ........ ...... . . ....... ... ... . .. . . . .... . . .. . ..... ...... . . . .................. .. . . . ... . ..... ....... ... .. . . . .................... . . .
lowQualScore : 0 4 00 666666666 999999 99 11 33333333333333333333333 7 2 777 0 0 7 22222222 55 2 222222 7 7 2 22 0 0 0 6 2 0 2 8888 0 00 8 000000000 22 22 7 88 000000 4 7 0 7 77 6 7 00000 5 4444444 0 4 0 8 0 0 0 5 00 88 2 0 000 3 33 5 5 555555555555555 55 0 33 3 3 7 777 3 3 3 3 0 88 000 0 88 000000000 8 2 0 0 0 0 00 888 8 777 00 22 7 5 2 00000000 222222 7 7 3333333 777 555 7 22 7 0 4 4444 6 3 66 3 55555 777777 1 1 1 888888888888888888 22 7 7 3 777 7 11111 2222222 777 66 3 7 3 66666666666666666666 0 0 0
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
Reference ( family-2446 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG--ATCTA-CATCTGTACAAGTATTACATTTCA-TTGCATTGTGCAC-ATTTTTCTTCC---------TTCGTTGTC-TAACTTTATACACAT-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCA-TTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ATCCTTA---------ATGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTT-TTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTT-AC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTA-TAT-T-CTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTGAAAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--C---TT-T-T-CA-T---TA-A---------ATAAGTATGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-TAAA--CTTGTCA-TA-A-CGATTGTTAATTT--TTTTTTTTTTTTTTTTTTTTTTCTTTTCTCAT-TG-TT-ATAAA
gi|10 : GTACA-----TACATT------GCATTGTACATTATTTTTGTTC---------------------ATGTTTA-ACAC-TTGCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTG-ACCTTGGTGCTCCCTGATAT-CAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tacTGTTCA-CCAAAGGGT--T-ATCGA-ATCAGCGA-------------CA-A---TATA---------ATA--TGTGTGCA-G-T-GCAGAA---ATATG-A-----ACAG----T----------A--CTTGTCA-AA-A-TGATT-------T--TTTTTTCT
gi|12 : tgTCAGACATATGTTAA-CCCAAATCT--T-GTCAA---CAACGA--G---TT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA------CAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTA-------------TTTTATTTTTTTCTTCTTTTCTCAT-TG-TT-AAAAAcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGTGCA-G-T-GCAGAA---ATGTGAACACTTACAG----T----------A--CTTGTCA-AA-A-TGATT----A--T--TTTTTTTCTtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgtTGTGG---TCTGTATTATA--CTCACTGCTTTGTAC-ATAATTTT-ATTTTCCT-TCCTCCCCCAACCTTGTTTTTT-CATTCGTTC-A-CCTT-TG-TAAGCT--T--CTTGGTTGCT-GGAG-T-Acattgttataattaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCT--G-GTC-A-A-CAACGAGGG---TT-A-T-CAGTA--TA-ATAATTGTATATAGATGTGTGCAGG-C-GCAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CT-------------ATT---------------------TTCTTTTTCTTCTTTTATCAT-TG-TT-ATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AATGTGG---TATGTGTTATA-TCTAACTGCTTTGTAC-ACAATTTTTATTTTCTTCCCCCCCCC----------TTTT-CA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTT--A-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-ATG-----------TATA-TCTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCT--T-GTC-A-A-CAACGA--G---TTAT-T-CA-TAACTG-A---------ATAGATGTG-GGA-G-G-GTGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAAT--AGCATCTGTACAAGTATTACATT------GCATTGTACAC-ATTTT-CTTCC---------TTCGTTGTCGTA-CTTTATACAC---ATAAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAATTCTTTT--A-AATC--ATCC-TA---------CTGAGTATTGGTAGTACTTTGT-GAAAATGTGGTA-T--GTATTA-A-TTTCACTGCTTCTTAC-AT-ATTTTTAT-------TCCCCCCCCCCC--------TT-CA-T-GTTCTAGCATTGTG-TAA---GAT--CTTGG-TGCTGGGAG-TAAC-AAAACCAAT--GGTgggt
gi|2 : GTATTA-ATTTCACT-GCTTCTTACAT-ATTTTTATTCCCCCCCCCCCTTCATGTTC-TAGCATTGT-------GTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTA---------CTGAGTATT--TAGTAA--TGT-GA-AATGTGGTATT--GTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCAC------TCT-CA-T-ATTCTA-CATT-TGTTAAGCTGTT--CTTGGTTGCT-GGAG-T-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCTC----------CCCCCCCCCACTCTC----ATA-TTCTAC-AT-TTGTTAAGCTGTTCTTGGTT-G-CT-GG-AGT--ACAAAGACCAATTAAG--TCTGGTG------CT-AGCTGTCACC-GAC--------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-G-TG-T---TA---------------------GCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGG-T-AATTTTTGTCA-AATA-TGATTATtccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCT--T-GTCAACA-CA-CGT--G---TA-T-T----T---TA----------------TGTGTGCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTa
gi|21 : atttttatcgt---TT-T-T-CA-TA--TA-T---------ATAGACGTTTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAG-T--A--CTTGTCA-AA-A-TGATTGTTAA--TAATTTTT
gi|23 : tTTTTGAATTATGAAACATG--AC--A-T---TATATAAGTAGTACATT------ACATTGTACAC-ATTTTCTTT
gi|25 : CCTTGGTGCTCCCTGCAAT-CGA-GTCAACAAtatttttcttcatgtt
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATAT-CT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATATTTCTACGATATTG-AAAGCAG-TCTTGG-T-G-CTGGGAAGT--AC-AAGACCAAT---GT-TGCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAAC-AGGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCT--TGGTC---A-CAAC-A--GACTTT-T-T-CA-T---GA-A---------ATAGATGTGTGCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGAT-AA--CTTGTCATAA-A-CGATTGT--A--T--TTTTTTTTCTTTTTCTTTTTTTCTTTTCTTATATG-TT-ATAGA
gi|4 : tcttatatatcCCTGCAAT-CGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTA---------CAGAGTATT--TAGTAA--TGTAA--AATGTGG---T--ATG-TATA-TCTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--A-GTCAA---CAATGA--G---TC-T-T---------------------------GTGTGCA-A-T-GCAGAA---ATGTG-A-----ACAG-----A-TGCG-T-AA--CTTGTCA-AACACTGATTATTA----------------TTTTTTTTTCTTC-TTTCTCAC-TG-TT-ATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTTG-ATA-TTCTAC-AT-TT---CAGCTA--CTTGGTTCGCCTGGGAAGTACAC-AAGACC-AT--AGT-T-TGGTG------CT-AGCTGTCACCAGATTGTTAACCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GC-ATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCT-GTC-A-A-CAACGAC-T---TT-T-T-CA-----TA-A---------ATAGATGTGTGCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTGTTAA----------------TTTTTTTTCTCGTTTTCTCAT-TGTTT-ATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG--AC--A------ATATAAATATTACATTTCAGT-TAATTGTACAC-GGTTTTATTTA---------TTTGCCAT----GCTTTACACAC---GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCA-CTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaa-TTG-AAAGTT---CT--GTT---CTGG--AG---AC-AAGA---AT--AGT--CTGG-G------CT-AG-TGT-ACCGAACTGTAAC---AGGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCT--T--TCAA-A---------G---TT-TGT-CA-T---CA-ATACTAAA--ATAGATGTGTTCA---T-GCAGAA----TGTGAA-----G----------TTGG-T-AA--CT-GT---AA-A-T-ATTGT--A--T--TTTTT-----TTTTATTTTTTCCTTT--TCA--TG-TTAATAAaacttcctttctttcgaaacaact
gi|8 : ataTT-G-CTGG--AGT--AC-AA-AGCAAT--GATGTCTGGTG------CTTAGCTGTCACCAGACTGT-AA---CAGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCT--T-GTCAA---CAACGA--C---TT-T-T-CA-T----A-A---------ATAAGTGCGTGCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTGT-G-AA--CTTGTCA-TA-A-TGATTG-TAA--T--TTTTTCTTT-----------CTCTTTTCTCAT-TG-TT-ATAAttgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG--AC--A-C-----TACAAGTATTACATT------ACATTGTACAC------TTTTCT---------TTTGTCTTC--ATGTTTATAC-T-T-GCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCC-CTGTCCCTTGGTACTCTCAATCAT-CAA-GCCAACTATTCAACACTTTTgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 11 333333333 444444 33333333333333333333333 222 22222222 11 111111 1 1 1111 11 333333333 11 222222 11 11111 4444444 2 11 1 111 1 11 1 1 555555555555555 11 1 11 222 1 1 1 11 1 11 222222222 1 1 1 11 111 111 22 11111111 111111 2222222 111 111 11111 111111 333333333333333333 1 1111111 55555555555555555555
lowQualScore : 2 1 11 999999999 999999 55 11 88888888888888888888888 1 3 444 1 1 6 44444444 33 0 999999 6 6 5 44 5 5 3 0 3 0 3 4444 1 11 0 222222222 99 99 6 55 888888 1 5 1 5 00 1 1 11111 2 3333333 8 0 8 0 8 8 8 2 77 33 3 5 111 3 88 5 5 333333333333333 77 5 44 7 7 0 555 3 3 7 7 0 33 999 0 33 222222222 0 3 0 0 0 8 77 666 0 111 00 99 6 2 3 11111111 999999 6 1 5555555 111 666 6 99 6 5 4 9999 3 3 44 3 11111 333333 3 3 3 666666666666666666 44 2 2 5 444 3 77777 2222222 333 44 3 6 3 55555555555555555555 5 5 5
lowQualScore : . . .. ......... ...... .. .. ....................... . . ... . . . ........ .. . ...... . . . .. . . . . . . . .... . .. . ......... .. .. . .. ...... . . . . .. . . ..... . ....... . . . . . . . . .. .. . . ... . .. . . ............... .. . .. . . . ... . . . . . .. ... . .. ......... . . . . . . .. ... . ... .. .. . . . ........ ...... . . ....... ... ... . .. . . . .... . . .. . ..... ...... . . . .................. .. . . . ... . ..... ....... ... .. . . . .................... . . .
lowQualScore : 0 4 00 666666666 999999 99 11 33333333333333333333333 7 2 777 0 0 7 22222222 55 2 222222 7 7 2 22 0 0 0 6 2 0 2 8888 0 00 8 000000000 22 22 7 88 000000 4 7 0 7 77 6 7 00000 5 4444444 0 4 0 8 0 0 0 5 00 88 2 0 000 3 33 5 5 555555555555555 55 0 33 3 3 7 777 3 3 3 3 0 88 000 0 88 000000000 8 2 0 0 0 0 00 888 8 777 00 22 7 5 2 00000000 222222 7 7 3333333 777 555 7 22 7 0 4 4444 6 3 66 3 55555 777777 1 1 1 888888888888888888 22 7 7 3 777 7 11111 2222222 777 66 3 7 3 66666666666666666666 0 0 0
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
Reference ( family-2446 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG--ATCTA-CATCTGTACAAGTATTACATTTCA-TTGCATTGTGCAC-ATTTTTCTTCC---------TTCGTTGTC-TAACTTTATACACAT-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCA-TTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ATCCTTA---------ATGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTT-TTTTTTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTT-AC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTA-TAT-T-CTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTGAAAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--C---TT-T-T-CA-T---TA-A---------ATAAGTATGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-TAAA--CTTGTCA-TA-A-CGATTGTTAATTT--TTTTTTTTTTTTTTTTTTTTTTCTTTTCTCAT-TG-TT-ATAAA
gi|10 : GTACA-----TACATT------GCATTGTACATTATTTTTGTTC---------------------ATGTTTA-ACAC-TTGCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTG-ACCTTGGTGCTCCCTGATAT-CAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tacTGTTCA-CCAAAGGGT--T-ATCGA-ATCAGCGA-------------CA-A---TATA---------ATA--TGTGTGCA-G-T-GCAGAA---ATATG-A-----ACAG----T----------A--CTTGTCA-AA-A-TGATT-------T--TTTTTTCT
gi|12 : tgTCAGACATATGTTAA-CCCAAATCT--T-GTCAA---CAACGA--G---TT-T-TTCA-T----A-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA------CAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTA-------------TTTTATTTTTTTCTTCTTTTCTCAT-TG-TT-AAAAAcattgttataataaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGTGCA-G-T-GCAGAA---ATGTGAACACTTACAG----T----------A--CTTGTCA-AA-A-TGATT----A--T--TTTTTTTCTtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgtTGTGG---TCTGTATTATA--CTCACTGCTTTGTAC-ATAATTTT-ATTTTCCT-TCCTCCCCCAACCTTGTTTTTT-CATTCGTTC-A-CCTT-TG-TAAGCT--T--CTTGGTTGCT-GGAG-T-Acattgttataattaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCT--G-GTC-A-A-CAACGAGGG---TT-A-T-CAGTA--TA-ATAATTGTATATAGATGTGTGCAGG-C-GCAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CT-------------ATT---------------------TTCTTTTTCTTCTTTTATCAT-TG-TT-ATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AATGTGG---TATGTGTTATA-TCTAACTGCTTTGTAC-ACAATTTTTATTTTCTTCCCCCCCCC----------TTTT-CA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTT--A-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-ATG-----------TATA-TCTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCT--T-GTC-A-A-CAACGA--G---TTAT-T-CA-TAACTG-A---------ATAGATGTG-GGA-G-G-GTGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAAT--AGCATCTGTACAAGTATTACATT------GCATTGTACAC-ATTTT-CTTCC---------TTCGTTGTCGTA-CTTTATACAC---ATAAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAATTCTTTT--A-AATC--ATCC-TA---------CTGAGTATTGGTAGTACTTTGT-GAAAATGTGGTA-T--GTATTA-A-TTTCACTGCTTCTTAC-AT-ATTTTTAT-------TCCCCCCCCCCC--------TT-CA-T-GTTCTAGCATTGTG-TAA---GAT--CTTGG-TGCTGGGAG-TAAC-AAAACCAAT--GGTgggt
gi|2 : GTATTA-ATTTCACT-GCTTCTTACAT-ATTTTTATTCCCCCCCCCCCTTCATGTTC-TAGCATTGT-------GTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNN-NNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTA---------CTGAGTATT--TAGTAA--TGT-GA-AATGTGGTATT--GTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCAC------TCT-CA-T-ATTCTA-CATT-TGTTAAGCTGTT--CTTGGTTGCT-GGAG-T-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCTC----------CCCCCCCCCACTCTC----ATA-TTCTAC-AT-TTGTTAAGCTGTTCTTGGTT-G-CT-GG-AGT--ACAAAGACCAATTAAG--TCTGGTG------CT-AGCTGTCACC-GAC--------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-G-TG-T---TA---------------------GCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGG-T-AATTTTTGTCA-AATA-TGATTATtccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCT--T-GTCAACA-CA-CGT--G---TA-T-T----T---TA----------------TGTGTGCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTa
gi|21 : atttttatcgt---TT-T-T-CA-TA--TA-T---------ATAGACGTTTGCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAG-T--A--CTTGTCA-AA-A-TGATTGTTAA--TAATTTTT
gi|23 : tTTTTGAATTATGAAACATG--AC--A-T---TATATAAGTAGTACATT------ACATTGTACAC-ATTTTCTTT
gi|25 : CCTTGGTGCTCCCTGCAAT-CGA-GTCAACAAtatttttcttcatgtt
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATAT-CT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATATTTCTACGATATTG-AAAGCAG-TCTTGG-T-G-CTGGGAAGT--AC-AAGACCAAT---GT-TGCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAAC-AGGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCT--TGGTC---A-CAAC-A--GACTTT-T-T-CA-T---GA-A---------ATAGATGTGTGCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGAT-AA--CTTGTCATAA-A-CGATTGT--A--T--TTTTTTTTCTTTTTCTTTTTTTCTTTTCTTATATG-TT-ATAGA
gi|4 : tcttatatatcCCTGCAAT-CGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTA---------CAGAGTATT--TAGTAA--TGTAA--AATGTGG---T--ATG-TATA-TCTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--A-GTCAA---CAATGA--G---TC-T-T---------------------------GTGTGCA-A-T-GCAGAA---ATGTG-A-----ACAG-----A-TGCG-T-AA--CTTGTCA-AACACTGATTATTA----------------TTTTTTTTTCTTC-TTTCTCAC-TG-TT-ATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTTG-ATA-TTCTAC-AT-TT---CAGCTA--CTTGGTTCGCCTGGGAAGTACAC-AAGACC-AT--AGT-T-TGGTG------CT-AGCTGTCACCAGATTGTTAACCCCGGC---ACCGTCCCT--TGG-T--GCTCCCT-GC-ATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCT-GTC-A-A-CAACGAC-T---TT-T-T-CA-----TA-A---------ATAGATGTGTGCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTGTTAA----------------TTTTTTTTCTCGTTTTCTCAT-TGTTT-ATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG--AC--A------ATATAAATATTACATTTCAGT-TAATTGTACAC-GGTTTTATTTA---------TTTGCCAT----GCTTTACACAC---GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCA-CTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaa-TTG-AAAGTT---CT--GTT---CTGG--AG---AC-AAGA---AT--AGT--CTGG-G------CT-AG-TGT-ACCGAACTGTAAC---AGGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCT--T--TCAA-A---------G---TT-TGT-CA-T---CA-ATACTAAA--ATAGATGTGTTCA---T-GCAGAA----TGTGAA-----G----------TTGG-T-AA--CT-GT---AA-A-T-ATTGT--A--T--TTTTT-----TTTTATTTTTTCCTTT--TCA--TG-TTAATAAaacttcctttctttcgaaacaact
gi|8 : ataTT-G-CTGG--AGT--AC-AA-AGCAAT--GATGTCTGGTG------CTTAGCTGTCACCAGACTGT-AA---CAGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCT--T-GTCAA---CAACGA--C---TT-T-T-CA-T----A-A---------ATAAGTGCGTGCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTGT-G-AA--CTTGTCA-TA-A-TGATTG-TAA--T--TTTTTCTTT-----------CTCTTTTCTCAT-TG-TT-ATAAttgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG--AC--A-C-----TACAAGTATTACATT------ACATTGTACAC------TTTTCT---------TTTGTCTTC--ATGTTTATAC-T-T-GCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCC-CTGTCCCTTGGTACTCTCAATCAT-CAA-GCCAACTATTCAACACTTTTgaa
blockSeqs : A A TA AGCATCT TCACT TA TG CCCCCCCCCCTTCATGTTCTAG T A TT C A A TTTTACTA TG CCACTT T C T AT . N T T T T A TTAT A CA AAGGCCTTT GG TT A AA TATT T T T T AA T T TTTCC C CTTGTTT . T C G G T G GA . T G TA A TA . . . GG G CT A T ATT A T T A T . TAC G . TTTTCTC T A T G A TT GTT CGC GA AC A C A TAAGTC GTTTGC T A TAACCCC AAA GGT T TA G A T AAAG G G TC G GAAT GACT A G T GTATAATAATTGTAT GA G A A AAC A CACTT TTATTA AT TT T T C GTATTTTTTTTTCT A T A
blockSeqs : . T . ATT TCAGT A TA CTTCGTTGTCGTA T A T T G . . CA . . . N CA . . A T T . A A T . . . . . A TCT T . T . AA T A TTTCT C T . . . . . . G GT . T . T . . A . . . . . T A . . TAC . . TTTC T . . . . A GT G GA . . C A GATGTC . . A TAAACA . T . . . A . . . . . . AACA GGG . . . TCAATACTAAA AT . . G . A . TAT T . . C . GTAATTTTTTCTTT . . .
blockSeqs : A . AC . A CT TTTTGTCTTCAT C A . C G . . TG . . . A NN . . A C . . . A T . . . . . . TAT T . A . AG T T TCCCC C C . . . . . . . . . . . T . . . . . CTG . . . . . A A G G . . C A GTTG . . G AACA . T . . . A . . . . . . AAA CT . . . TAACTGA GA . . . . A . TA T . . . . GTATTTTTT . . .
blockSeqs : T . A . A TA ATTTGCCATG T . . C G . . . . . . T CA . . T . . . . . . . . . TAT T . T . A A T TTT . . . . . . . . . . . G . . . G . AGTT . . A AAC . . . . . A . . . . . . AAA G . . . ATATA GA . . . . A . TA T . . . . GTTATTT . . .
blockSeqs : . G TT AT . . . . . . . . . . . . CA . . T . . . . . T . . A . A . T C . . . . . . . AGTC . . . . . . . . . . . . . . . . AA G . . . TATAT GA . . . . A . TA T . . . . GTTAA . . .
blockSeqs : . . C TC . . . . . . . A . . . . . . . . . . . . AA G . . . TGAA GA . . . . A . TA T . . . . ATTA . . .
blockSeqs : . . . . . . . . . AA G . . . TAA GA . . . . . . T T . . . . . . . .
blockSeqs : . . . . . . AA G . . . TTA GA . . . . . . T T . . . .
blockSeqs : . . . . AA G . . . TTA AG . . . . . . A G . . . .
blockSeqs : . . . . AA C . . . TAA . . . . . . . A . . . . .
blockSeqs : . . . A . . . . TAA . . . . . . . A . . . . .
blockSeqs : . . . . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqs : . . . .
blockSeqCons : AC******* ****** CTTCGCCTCATG*********** *** TAT*** C****** ** G** G* AGTN**** TAAC*** AA*** TAA*************** TA***** T** GTTTTT**************
originalCons : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--AC--A-CATCTGTACAAGTATTACATTTCA-T-GCATTGTACAC-ATTTTTNTTCC---------TTCGTCGTC-TANCTTTATACAC-T-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGG---T--GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCCTT-TTTTTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG-AAAGCTG-TCTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--AGT-TCTGGTG------CT-AGCTGTCACCAGACTGTTAA---AGGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA-A-CAACGA--G---TT-T-T-CA-T---TA-A---------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTGTTAA--T--TTTTTTTTTTTTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
finalCons : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG--ACAC-------GTACAAGTATTACATT------GCATTGTACAC-ATTTTTNTTCCTTCGCCTCATG-----------CTTTATACAC---GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAAT-CAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AATGTGGTAT---GTATTATA-TCTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCCC------TTT-CATT-GTTCTA-CATT-TG-TAAGCTGNT--CTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC-AT-TTG--AAGCTG--CTTGGTT-G-CTGGG-AGT--AC-AAGACCAATAGTN----TGGTG------CT-AGCTGTCACCAGACTGTTAAC---GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAA---CAACGA--G---TT-T-T-CATAA---------------ATAGATGTGTGCA-G-T-GCAGAA---ATGTGAA-----ACAGTA-----TTGGT--AA--CTTGTCA-AA-A-TGATTGTTTTT--------------TTTTTTTTTCTTCTTTTCTCAT-TG-TT-ATAAA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT
Alignments
lowQualScore : 1 3333333333333333 11111 11111 3333333333 222 22222222 11 111111 1 1 1111 11 333333333 1111 2222222 4444444444444 2 2222 1 111 1 11 1 1 555555555555555 11 1 11 222 1 1 1 11 1 11 222222222 1 1 111 222 22 111 22 1111111 111111 333333333 111 111 44444444444444444444444444444444444444444444 1 3333333333333333333 1111111
lowQualScore : 2 1 8888888888888888 3 44444 44444 55 5 1 5 2222222222 4 4 000 1 1 6 44444444 33 0 999999 6 6 5 44 5 5 3 0 3 0 3 4444 1 11 0 222222222 99 99 6 99 5 1 5 5 5 1 5 7777 1111111 2222222222222 0 8 0 8 8 8 2 0000 3 5 111 3 88 5 5 333333333333333 77 5 44 7 7 0 555 3 3 7 7 0 33 999 0 33 222222222 0 3 0 0 777 555 77 0 111 00 99 6 2 3 5555555 1 999999 6 1 111111111 111 666 6 99 6 5 4 9999 3 3 44 3 6 44 3 22222222222222222222222222222222222222222222 44 33 2 2 5 444 3 77777 88888 33 333 44 44 6 3 7777777777777777777 0 1111111 4 4 4
lowQualScore : . . ................ . ..... ..... .. . . . .......... . . ... . . . ........ .. . ...... . . . .. . . . . . . . .... . .. . ......... .. .. . .. . . . . . . . .... ....... ............. . . . . . . . .... . . ... . .. . . ............... .. . .. . . . ... . . . . . .. ... . .. ......... . . . . ... ... .. . ... .. .. . . . ....... . ...... . . ......... ... ... . .. . . . .... . . .. . . .. . ............................................ .. .. . . . ... . ..... ..... .. ... .. .. . . ................... . ....... . . .
lowQualScore : 0 4 3333333333333333 0 33333 33333 99 7 0 3 7777777777 0 2 888 0 0 7 22222222 55 2 222222 7 7 2 22 0 0 0 6 2 0 2 8888 0 00 8 000000000 22 22 7 22 7 4 7 0 7 0 7 1111 2222222 4444444444444 4 0 8 0 0 0 5 8888 2 0 000 3 33 5 5 555555555555555 55 0 33 3 3 7 777 3 3 3 3 0 88 000 0 88 000000000 8 2 0 0 555 222 00 8 777 00 22 7 5 2 2222222 0 222222 7 7 333333333 777 555 7 22 7 0 4 4444 6 3 66 3 7 66 3 22222222222222222222222222222222222222222222 22 99 7 7 3 777 7 11111 88888 66 777 66 99 7 3 9999999999999999999 9 4444444 0 0 0
consensus : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG-----AC--AC----GTACAAGTATTACATT-----GCA-----TTGTACAC-ATTTT-TNTTCCTTCGCC----T-CATGCTTTATACAC---GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAA-TCAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AA-TGTGGTAT-GTATTATAT-CTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCC------C------TTTCATT-GTTCTA-CATT-TG-TAAGCTG--TTCTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC---ATTTG--AAGCTGT-CTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--A--G-TCTGGTG------CT-AGCTGTCACCAGACTGTT-AA---C-GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTC-AA--CA-ACGA--G---T-T-T-T-C---A-T--------A----A---------ATAGATGTGT--GCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTG------------T---T-TTTTTTTTTTTTC-----TTCTTTTCTCAT-TG-TT-ATAAA
Reference ( family-2446 ) : ATTCTCATCCAAGTTAGCAAGATGATTTTAAATAGTGGAATATG-----AC--AC----GTACAAGTATTACATT-----GCA-----TTGTACAC-ATTTT-TNTTCCTTCGCC----T-CATGCTTTATACAC---GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------CAATGGTCTGGTACTACAATTTATCG------CCAGACT-GTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAA-TCAA-GTCAACAANTCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ACCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AA-TGTGGTAT-GTATTATAT-CTCACTGCNTTGTAC-ACAATTTTTATTTTCCTCTCCCCCCCCCCC------C------TTTCATT-GTTCTA-CATT-TG-TAAGCTG--NTCTTGGTTGCTGGGAG-T-AC-AAGACCAAT--AGTCTGGTGCTAAGCTGTCACCAGACTGTTAACAGGCACCGTCCCTGGTGGTGCTCCCTGGCAATCGAGTCAN-CAAATCAACGTTTTGTAAA--TATGTG-GTAT-GTATTATAT-CT--CACTGCATTGTACA-CAA--TTTTTTTTTTCTCTNCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC---ATTTG--AAGCTG--CTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--A--G-TNTGGTG------CT-AGCTGTCACCAGACTGTT-AA---C-GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTC-AA--CA-ACGA--G---T-T-T-T-C---A-T--------A----A---------ATAGATGTGT--GCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTG------------T---T-TTTTTTTTTTTTC-----TTCTTTTCTCAT-TG-TT-ATAAA
gi|1 : ATTCTCATCCAAGTTAGCAAGATGATTTTAAGTAGTGGAATATG-----ATCTACATCTGTACAAGTATTACATTTCATTGCA-----TTGTGCAC-ATTTT-TCTTCCTTCGTTG---T-CTAACTTTATACACAT-GTAAGCTGTCTTGGTTGCTGGGAGTA-CAAGAC--------TAATAGTCTGGTACTACAATTTATTG------CCAGACT-GTTAACAGGCA-TTGTCCCTTGGTGCTCCCTGCAATTCAA-GTCAACAAATCAACATTTTTGTAAAATTGTTTTCATTTATACAA-TTGATAATTCTTTT--A-AATC--ATCCTTA---------ATGAGTATT--TAGTAA--TGT-G--AA-TGTGG--T-GTATTATAT-CTCACTGCTTTGTAC-ATGATTTTTATTTTCTTCTCCCCCCCCCCCTTTTTTT------TTTCATT-GTTCTA-CATT-TG-TAAGCTGCTTTCTTGGTTGCTGGGAGTT-AC-AAGACCAAT--AGTCTGGTGCTAAGTTGTCACCAGACTGTTAACAGGCACCGTCCCT--TGGTGCTCCCT-GCAACCGAGTCAT-CAAATCAACATTTTGTAAA--TATGTG-GTAT-GTA-TAT-T-CTAACACTGCATTGTA-A-CAAATTTTTTTTTTTCTCTTCTCTCTCTCCCCCCCCCCCCCCCTTG-ATA-TTCTAC---ATTTGAAAAGCTGT-CTTGGTT-G-CTGGG-AGT--AC-AAGACCAAT--A--GTTCTGGTG------CT-AGCTGTCACCAGACTGTT-AA---A-GGC---ACCGTCCCT--TGG-T--GCTCCCT-GCAATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--T-GTCAAA--CA-ACGA--C---T-T-T-T-C---ATT--------A----A---------ATAAGTATGT--GCA-G-T-GCAGAA---ATGTGAA-----ACAG----TA-TTGG-TAAA--CTTGTCA-TA-A-CGATTGTTAATTTTTTTTT---T-TTTTTTTTTTTTT-----TTCTTTTCTCAT-TG-TT-ATAAA
gi|10 : --AC----GTACA-----TACATT-----GCA-----TTGTACATTATTTT-TGTTC--------------ATGTTTAACACTT---GCAAGCTGTCTTGGTTGCTGGAAATA-CAAGAC--------CAATGGTCTGGTTCTACAATTTATCA------CCAGGCT-GTTAACAGGCACCTG-ACCTTGGTGCTCCCTGATA-TCAT-GTCAACAATTCAACA--TTTGTACAATTGTTTTC
gi|11 : tTGTTCA-CCAAAGGGT--T-ATC-GAATCA-GCGA--------------C---AAT--------AT---A---------ATA--TGTGT--GCA-G-T-GCAGAA---ATATGAA------CAG----TA------------CTTGTCA-AA-A-TGATT------------------------TTT-------------TTTTCTCAT-TG-TT-ATAA
gi|12 : tgTCAGACATATGTTAA-CCCAAATCT--T-GTC-AA--CA-ACGA--G---T-T-T-TTC---A-T--------A----A---------ATAGATGTGT--GCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CTTGTCA-AA-A-TGATTG------------T---TATTTTATTTTTTTC-----TTCTTTTCTCAT-TG-TT-AAAAAtaaattgcttgttaatatgtaccccccccccccctacgagggcccttgattgttgaataaaaacatgaattct
gi|13 : ---------ATAATTGTGT--GCA-G-T-GCAGAA---ATGTGAACACTTACAG----TA------------CTTGTCA-AA-A-TGATTA------------T---T-TTTT-------------------TTCTCAT-TG-TT-ATAAtaa
gi|14 : atgcgttcaccaaagggatatcgaatcgt-TGTGGTCT-GTATTATA--CTCACTGCTTTGTAC-ATAA-TTTTATTTTCCT-TCCTCCCCCAAC------CTTGTTTTTTCATTCGTTC-A-CCTT-TG-TAAGCT----TCTTGGTTGCT-GGAG-T-Attaatt
gi|15 : aatA-ACAA----TGCA-TCATTTGTTAAGTCCAAATCT--G-GTC-AA--CA-ACGAGGG---T-T-A-T-CAGTA-T--------A----ATAATTGTATATAGATGTGT--GCAGG-C-GCAGAGAACATGTGAT-----ACA
gi|16 : caaA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTGG-T-AA--CT----A--------------------------------TTTTCTTTTTC-----TTCTTTTATCAT-TG-TT-ATAAAcag
gi|17 : GAGTATT--TAGCAA--TGT-G--AA-TGTGGTAT-GTGTTATAT-CTAACTGCTTTGTAC-ACAATTTTTATTTTCTT----CCCCCCCCC------T------TTTCA-T-GTTCTA-CATT-TG-TAtaattacttgttaacttgtacatgccccccccccccc
gi|18 : TTT--A-AAAC--ACCCTTAAAGGCCTTTCTGAGTATT--TAGTAA--TGT-G--AA-------AT-G---TATAT-CTCACTGCATTGTACTACA----TAAT----CCCACCCCCCCCCC
gi|19 : CAATCA---CATATAA----T-CA-ACATTTGATAA-CCCAAATCT--T-GTC-AA--CA-ACGA--G---T-TAT-T-C---A-T--------AACTGA---------ATAGATGTG---GGA-G-G-GTGGAA---A
gi|2 : TTCTCATCCAA-TTAGCAAGATGATTTTAAGTAGTGGAATATATAATAGC--ATCT--GTACAAGTATTACATT-----GCA-----TTGTACAC-ATTTT--CTTCCTTCGTTG---T-CGTACTTTATACAC---ATAAGTTGTCT-GGTTGCTGG-AGTA-CAAGACTTTTACTACAA--GTCTGGTACTA----TTATTG------CCAGACTTGTTAACAGGCA-CTGTCCCTTGGTGCTCCCTGCAA-TCAA-GTCCAAAAATCAACATTGTTGT-AAATTGTTTTCATTTATACAATTTGATAATTCTTTT--A-AATC--ATCC-TA---------CTGAGTATTGGTAGTACTTTGT-GAAAA-TGTGGTAT-GTATTA-AT-TTCACTGCTTCTTAC-AT-ATTTTTATT---------CCCCCCCCC------C------CTTCA-T-GTTCTAGCATTGTG-TAA---G--ATCTTGG-TGCTGGGAG-TAAC-AAAACCAAT--GGTgggt
gi|2 : AATGTG-----GT--AT----GTATTA--ATTTCACT-----GCT-----TCTTACAT-ATTTT-TATTCCCCCCCCCCCTT-CATGTTCTA-GCATTGTGTAAG--ATCTTGGT-GCTGGGAGTAACAAAAC--------CAA-----TGGTNNNNNNNNNNNNNN------NNNNNNN-NNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN-NNNNNGTCA--------------TTGTAAAATCGTTTCCAT--ATACAA-TTGATAATTCTTTTTTATAATCCAGCCCTTA---------CTGAGTATT--TAGTAA--TGT-G--AAATGTGGTATTGTATTATATTCTCACTGCATTG----ACAGTATTT-TTTT--TCTCCCCCCCCCCA------C------TCTCA-T-ATTCTA-CATT-TGTTAAGCTG--TTCTTGGTTGCT-GGAG-T-ACAAAGACCAATTAAGTCTGGTGCT-AGCTGTCACC-GAC---------------TCCCTGGTGGTGCTCCCTGGCAATCAATCCAA-C-ATTCAATGTTGTTTAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaatgtgaaatgtggtattgtattatattctcactgcattgacagtattttttttctccccccccccactctcatattctacatttgttaagctgttcttggttgctggagtacaaagaccaattaagtctggtgctagctgtcaccgactccctggtggtgctccctggcaatcaatccaacattcaatgttgtttaatccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|2 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaTGTGAA---ATGTG-GTATTGTATTATATTCT--CACTGCATTG---A-CAG--TATTTTTTTTCTC----------CCCCCCCCCACTCTC----ATA-TTCTAC---ATTTGTTAAGCTGTTCTTGGTT-G-CT-GG-AGT--ACAAAGACCAATTAA--G-TCTGGTG------CT-AGCTGTCACC-GAC----------------------TCCCTGGTGG-T--GCTCCCTGGCAATCAATCCA-AC-A----TTCA-ATGTTGTTTAA-TCCAAATCT--T-GTCAAA--CA-ACGA--G---T-T----------------------------------------TGTGTTAGCA-G-TAGCAGAA---ATGTGAA-----TCA------A-ATGG-T-AATTTTTGTCA-AATA-TGATTA------------T---tccaaatcttgtcaaacaacgagtttgtgttagcagtagcagaaatgtgaatcaaatggtaatttttgtcaaatatgattata
gi|20 : ttctcatccaattagcaagatgattttaagtagtggaatatataatagcatctgtacaagtattacattgcattgtacacattttcttccttcgttgtcgtactttatacacataagttgtctggttgctggagtacaagacttttactacaagtctggtactattattgccagacttgttaacaggcactgtcccttggtgctccctgcaatcaagtccaaaaatcaacattgttgtaaattgttttcatttatacaatttgataattcttttaaatcatcctactgagtattggtagtactttgtgaaaatgtggtatgtattaatttcactgcttcttacatatttttattcccccccccccttcatgttctagcattgtgtaagatcttggtgctgggagtaacaaaaccaatggtnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngtcattgtaaaatcgtttccatatacaattgataattcttttttataatccagcccttactgagtatttagtaa-ACATGTATAAA-TCTAAATCT--T-GTC-AA--CACACGT--G---TAT-T-T-T---A-T-----------------------------GTGT--GCA-T-T-GCAGAA---ATGTG-A-----ACAG----TA-TTa
gi|21 : atttttatcgt---T-T-T-T-C---A-T--------AT---AT--------ATAGACGTTT--GCA-G-T-GCAGAA---ATGTG-A-----ACAG----TA-TTAG-T--A--CTTGTCA-AA-A-TGATTG------------T---T-
gi|23 : tTTTTGAATTATGAAACATG-----AC--ATT---ATATAAGTAGTACATT-----ACA-----TTGTACAC-ATTTTCTTTTATTTTTCT----T-CATGTTaataattttt
gi|25 : CCTTGGTGCTCCCTGCAA-TCGA-GTCAACAA
gi|3 : ATTGAGTCACTCAAA-CAACATTTTGTAAAATTATGTGAGTAT-GTATTATAT-CT--CACTGCATTGTACAGCAA--TTTTTTTT-----TCCTCTCTCCCCCCCCCCCCCCCCGTTGAATATTTCTACGATATTGA--AAGCAGT-CTTGG-T-G-CTGGGAAGT--AC-AAGACCAAT--G--T-TGCGGTGGTTTGCTT-AGCTGTCACCAGACTGTTAAA---CAGGCAAAAACGTCCCT--TGGTT--GCTCCCT-GCAATCAAGTCA-ACAAAAAGTTCA-ACAATTGTTAA-CCCAAATCT--TGGTC--A--CA-AC-A--GACTT-T-T-T-C---A-TG-------A----A---------ATAGATGTGT--GCA-GAT-GC-GAA---ATGTGAA-----CAAGTTATTA-TTGGAT-AA--CTTGTCATAA-A-CGATTGTAT---------T---T-TTTTTTCTTTTTCTTTTTTTCTTTTCTTATATG-TT-ATAGA
gi|4 : tcttatatatcCCTGCAA-TCGA-GTCAGCAAATCAACATTTT-GTAAAATTGTTTTCATTTATACAA-TTG---------------------ACCCTTA---------CAGAGTATT--TAGTAA--TGTAA--AA-TGTGGTAT-G---TATAT-CTCACTACATTGTAC-AC----TTTATTCCCCattttgaattatgagcatagtgtacatgtaaactctgtaacatgcccccccccccccccccccccccccccccccccccccccg
gi|4 : -ACAA----TTCA-ACATTTGTTAA-CCCAAATCT--A-GTC-AA--CA-ATGA--G---T-C-T--------------------------------------TGTGT--GCA-A-T-GCAGAA---ATGTG-A-----ACAG-----A-TGCG-T-AA--CTTGTCA-AACACTGATTA------------------TTATTTTTTTTTC-----TTC-TTTCTCAC-TG-TT-ATAAAacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnacaattcaacatttgttaacccaaatctagtcaacaatgagtcttgtgtgcaatgcagaaatgtgaacagatgcgtaacttgtcaaacactgattattatttttttttcttctttctcactgttataaataatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|5 : cctgcaatcgagtcagcaaatcaacattttgtaaaattgttttcatttatacaattgacccttacagagtatttagtaatgtaaaatgtggtatgtatatctcactacattgtacactttattccccacccttgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn-CT--CACTGCAGTGTACA-CAA--TTTTTT------CTGCTCTCTCTCTCCCCCCTCCCCCCTTG-ATA-TTCTAC---ATTT---CAGCTA--CTTGGTTCGCCTGGGAAGTACAC-AAGACC-AT--A--G-TTTGGTG------CT-AGCTGTCACCAGATTGTT-AACCCC-GGC---ACCGTCCCT--TGG-T--GCTCCCT-GC-ATCAAGTCA-ACAA----TTCA-ACATTTGTTAA-CCCAAATCTTCT-GTC-AA--CA-ACGAC-T---T-T-T-T-C---A-T--------A----A---------ATAGATGTGT--GCA-G-TGGCAGAA---ATGTG-A-----ACAG----TATTTGG-T-AA--CTTGTCA-TA-A-TGATTG------------------TTAATTTTTTTTC-----TCGTTTTCTCAT-TGTTT-ATAAAtaatgctgttacatgtaacttgtacatgcccccccccccgagggcccttgattgtgctgaataacactaataca
gi|6 : ATGCTCATCCAAATTAGTAAGATGATTCTAAAAAGTGGAACATG-----AC--A-----ATATAAATATTACATT-----TCAGTTAATTGTACAC-GGTTT-TATTTATTTGCC-------ATGCTTTACACAC---GTAAGCTGTCGTGGTTGCTGGGAGTA-AAAGAC--------CAACAGTCTGGTACTACAATTCATTA------CGGGACT-GTTGACAGGCA-CTGATCCTTGGTGCT---TG------AA-GTGAACAATTCAACA-CTTTGTACAA---TTTTCAtaattgttgttacatgtaacttgttactgcccccctaggcccttgctggtggaataaactaata
gi|7 : aaaTTG--AAAGTT--CT--GTT---CTGG--AG---AC-AAGA---AT--A--G-TCTGG-G------CT-AG-TGT-ACCGAACTGT--AA---CAGGC---ACGGTCCCT---GG-TTAGCTCC-T-GCA-TCAAGT---A-AA----TTCA-ACATTT---AA-CC--AATCT--T--TC-AA--------A--G---T-T-TGT-C---A-TCAATACTAA----A---------ATAGATGTGT--TCA---T-GCAGAA----TGTGAA-----G----------TTGG-T-AA--CT-GT---AA-A-T-ATTG------------TATTT-TTTTTTTATTTTT-----TCCTTT--TCA--TG-TTAATAAaacttcctttctttcgaaacaact
gi|8 : ataTT-G-CTGG--AGT--AC-AA-AGCAAT--GATG-TCTGGTG------CTTAGCTGTCACCAGACTGT--AA---C-AGC---ACCGTCCTT----G-T--GCTCCCT-GCA-TCAAGTCA-ACAA----TTCA-ACATT-GTTAA-CCCAAATCT--T-GTC-AA--CA-ACGA--C---T-T-T-T-C---A-T--------A----A---------ATAAGTGCGT--GCA-G-T-GCAGAA---ATGT--A-----ACAG-----A-TTGT-G-AA--CTTGTCA-TA-A-TGATTG------------T---A-ATTTTTTCTTT-------CTCTTTTCTCAT-TG-TT-ATAAttgtcttgttacatgtaactgtaagtacat
gi|9 : AAGATGTTTTTGAATTGTGAAATATG-----AC--AC-----TACAAGTATTACATT-----ACA-----TTGTACAC-------TTTTCTTTTGTC----TTCATG-TTTATACTT---GCAAGCTGTCTTGGTTGCTGGGAGGA-CGAGAC--------CAATGGTCTGGTACTGCAATTTATCACCACTTCCAGACT-GTTAACTGGCC-CTGTCCCTTGGTACTCTCAATCA-TCAA-GCCAACTATTCAACACTTTTgaa
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|22 ): TGTTATAAATCATTGCTTGTTAGCTTGTACACCCCCCCCCAACCACCACCACAGGGCCCTTGATTGGTGAGTAAACAT
Unaligned ( gi|24 ): ATAATAATTGCTTGTTAACCTGCACATGCCCCTCCCCCAAGGGTCCTTGATT