lowQualScore : 88888888888888888888888888888888888888888888888888888888888888 666666
lowQualScore : 1 22 1 33 1 1 1 1 5555555555 0 33 2 33333333333333333333333333333333333333333333333333333333333333 222 1 1 22 000000 2
lowQualScore : . .. . .. . . . . .......... . .. . .............................................................. ... . . .. ...... .
lowQualScore : 6 22 5 44 4 4 3 3 8888888888 3 22 7 22222222222222222222222222222222222222222222222222222222222222 444 4 5 00 555555 2
consensus : ATCTAA-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CTCATCG--A-TTTTGT--T-ATTTT----C-------C---GC----G-AAAA----T--A-C-AAAATCGAT----G---AGCTG-GGAG-ATTT--AATTTT-A--TTAA-TTAGATTG
Reference ( gi|2 ) : ATCTAA-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CTCATCG--A-TTTTGT--T-ATTTT----T-------C---GT----G-AAAA----T--A-C-AAAAT---T----G---AGCTG-GGAG-ATTT--AATTTTGATGTTAA-TTAGATTG
gi|4 : ATCTAA-T--T-AAAA--TTAAA-TTC-TCC-CAG----------CTTATCG--A-TTTTGT--T-ATTTC----GCA-----C---GC----G-AAAATAC-T--A-C-AAAATCGAT----G---AGCTT-GGAG-A-TT--AATTTTAAT
gi|6 : ATCTAA-T--T-AGAA--TTAAA-T-C-TCC-CAG----------CTCATTG--A-TTTTGT-----TTTT----A-------C---GC----G-AAAA----A--A-C-AAAATCAAT----G---AGGTG-GGAG-ATTT------------TTAA-TTAGAt
gi|3 : aATCTAA-T--T-AAAT--TAAAA-T-CCTCCACAG----------CTCATCG--A-TTTTGT--T-ATTTT----CCCA----C---GC----GAAAAA----TA-A-CAAAAATCGAT----G---AGCTG-GGAG-A-TT--AATTTTAA
gi|10 : taatATCTAA-T--T-ATAA--TTCAA-T-C-TCC-CAG----------CTCATCA--A-TTTTGT--T-ATTTT----TG------C---ATGG--G-AAAA----TA-A-C-AAAATCGAT----G---AGCTG-GGA
gi|5 : aATCTAA-T--T-AATA--TTAAA-T-C-TCC-CAG----------CTTATTG--A-TTTTGT--T--TTTC----A-------C---TT----G-GA---------A-C-AAAATCA-T----G---A-CTG-GGAG-ATTT--AA-TTTG-----AA-TTAGAT
gi|5 : aATCTAA-T--T-CAAA--TTAAA-T-C-TCC-CAG-----------TCAT-G--A-TTTTG--------TT----C-------CAA-GT----G-AAAA-------A-C-AAAATCAAT----A---AGCTG-GGAG-ATTT--A------ATATTAA-TTAGATT
gi|12 : ATCTAA-T--T-AAAA--TTAAA-T-C-TCT-CAG----------CTCATCG--A-TTTTGT--T-ATTTT------------C---GC----G-AAAA----T----------T---T----------------AG-ATTT--AATTTT------AA-TTAGATT
gi|12 : ATCTAA-T--T-AAAA--TTAAA-T-C-T-------------------------A-----------AATTT----T-------C---GC----G-AAAA----T--AAC-AAAATCGAT----G---AGCTG-AGAG-ATTT--AATT------TTAA-TTAGAT
gi|7 : ATCCAA-T--T-AAAA--TTAAA-T-C-TTC-CAG----------TTCATTG--A-TTTTGT--T-GTTTT----CGCTCCAAC---AT----G-AAAA----CA-A-C-AAAATCAAT----G---AGCTG-GGAt
gi|8 : ATATAA-T--T-AAAA--TTAAA-A-C-TCC-CAG----------CTCATCG--A-TTTTGG--T-ATT---------------------------AAA----T----C-GA------T----G---AGCTG-GGAG-ATTT--AA---TAA---TAA-TTAGATtg
gi|8 : tATCTAA-T--T-ATTA--TTAAA-T-C-TCC-CAG----------CTCATCG--A-TTT--------------------------------------AA----T--ACC-AAAATCGAT----G---AGCTG-GGAG-TTTT--AATTTTAATt
gi|14 : tATCTAA-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CTCA--------------------------------------AT----G-AAAT----T--G-C-GA------T----G---AGCTG-GGAG-ATTT--AATTTTAATATTAtatatt
gi|15 : tcATCTAA-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CTCGTCG--A--------------TT----T-------C---AC----G-A----------------------T----G---AGCTG-TGAG-ATTT--AATT------TTAA-TTAGATtg
gi|15 : ATCTAA-T--T-AAAA--TTAAA-T-C-TCA-CAG----------CTCATCG-------TG-----------------------------------AAA----T----C-GA------C----G---AGCTG-GGAG-ATTT--AATT------TTAA-TTAGAT
gi|18 : ATCTAA-T--T-AAA----TAAA-T-C-TCC-CAG----------CTCATCG--A-TTTTGT--T-ATTTT----C-------C---GC----G-
gi|19 : ATCTAA-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CTCATCG--A-TTT
gi|1 : ATCTAAAT--T-AAAAATTTAAAAT-C-TCC-CAG----------CTCATCGA-A-TTTTGTA-TAATTTT----T-------C---t
gi|6 : tctgagattacttctaaatggggagttgttagatctcccacgctTCTAA-T--T-AAAA------A-T-C-TCC-CAC----------CTCATTG--A-TTTTGT-----TTTT----T-------C---GC----G-TAAA----A--A-C-AAAATCAAT----G---AGCTG-GGAG-ATTT--AATT------CTAA-TTAGATTttgcc
gi|14 : TCTAA-TATT-AAAA--TTAAA-T-C-TCC-CAG----------CTCATCGCAA-TTTC-----------------------------------------------------AT---T----G---AGCTG-GGAG-ATTT--AATT------TTAA-TTAGATTG
gi|11 : TCTAA-T--A-AAAAA-TTGAA-T-C-TCC-CAG----------CTCATTA--A-TTTTGT--T-GGTTT----T-----------GC----G------------------------T----G---AGCTG-GGGG-ATTT--AATTT
gi|13 : atTCTAA-T--T-CAAA--T-AAA-T-C-TCC-CAACACTGAACTCCTCCTTG--A--TTTGT--T-GTTTT----CA------C---AT----G-AAAA----aacgaga
gi|3 : ctcattgatgtcgTAA-T--TTAAAA--TTAA--T-C-TCC-CAG----------CTCATCG--ATTTTTGT--T-ATTTT----T-------C---GCGTGGG-AAAA----TA-A-C-AAAATCGAT----G---AGCTGTGGAG-------GATTTTAAT-TTAA-TTAGAT
gi|4 : AA-T--T-AAAA--TTAA--T-C-TCC-AAG----------CTCATCG--A-TTTTGTAGT-ATTTT----CG------C---GT----GCGAAA----TA-A-C-AAAAT---C----GATAAGCTG-GGAGAATTT--AATT------TTAA-TTAGAT
gi|9 : A-T--T-AAAA--TTAAA-T-C-TCC-CAG----------CGCATTT--A-TTTTGT--T-G-TTT----T-------C---TT----A------------A-C-AAAATGAAT----G---ATCTG-GGAG-ATTT--AATTTTAAT
gi|9 : A-T--T-AAAA--TTAAA-T-C-TCC-CAG----------ATCATTC--A-TTTTGT--T-A---------------------A----G-AAAA----CA-A-C-AAAATAAAT----G---CGCTG-GGAG-ATTT--AATTTTAATag
gi|17 : -AAAA--TTGAA-T-C-TCC--AG----------CTCATTA--AATTTTGT--T-GGTTT----T-------T---GC----G------------------------T----G---AGCTG-GGGG-ATTT--AATTag
gi|11 : taaaataaAAA--TTAAA-T-C-CCC-CAG----------CTCA----------------------------------C---GC----A-AAAC----C--AAC-AAAAT---TAAT-G---AGCTG-GGAG-ATTC--AATTTT----TT-A-TTAGA
gi|17 : atAA--TTAAA-T-C-CCC-CAG----------CTCA----------------------------------C---GC----A-AAAA----CCAA-C-AAAAT---TTAATG---AGCTG-G-AG-ATTC--AATTTTaacgaga
gi|10 : taaaataa-TCC-CAG----------CTCATCG--A-TTTTGT--T-ATTTT----C-------CCATGC----A-AAAA----TA-A-C-AAAATTGAT----G---AGCTG-GGAG-ATTG--AATT---A---TAA-TTAGATT
gi|7 : -TCC-CAG----------CTCATTG--A-TTTTGT--T-GTTTTCATGT-------TGGAGC----G-AAAA----CA-A-C-AAAATCAAT----G---AACTG-GAAG-ATTT--AATT------TTAA-TTGGATTG
gi|1 : T----G-AAAAATTAT--A-C-AAAAT---TCGATG---AGCTG-GGAG-ATTTTAAATTT-----TTAATTTAGATT
gi|18 : tctgagattacttctaaatggggagttgttagatctcccacgc----G-AAAA----T--AAC-AAAATCGAT----G---AGCTG-GGAG-ATTT---AT-------TTAA-TTAGATtgcc
gi|19 : AAATCGAT----G---AGCTG-GGAG-ATTT--AATT------TTAA-TTAGATTcgcg
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): TCTGAGTGACCTAATGGGGTGTAGATCTCCCACAGCGAAAATACAAACATGATAAGCTGCGGGATCTTAA
Alignments
lowQualScore : 1111111111 55555555555555555555555555555555555555555555 111111111
lowQualScore : 2 2 2 2 0000000000 0 2 555 11111111111111111111111111111111111111111111 2 33 777777777 4
lowQualScore : . . . . .......... . . ... ............................................ . .. ......... .
lowQualScore : 5 5 4 4 3333333333 1 4 888 11111111111111111111111111111111111111111111 7 77 999999999 0
consensus : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----AAA--A---T-AC-AAA-AT-CGATGAGCTGGGAGAT-TT--AATTT---TATTAA-TTAGATTG
Reference ( family-2420 ) : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----AAA--A---T-AC-AAA-AT-CGATGAGCTGGGAGAT-TT--AATTT---TATTAA-TTAGATTG
gi|1 : TTGTTAGATCTC-C-------C---ACGCTGAAAAATTA---T-AC-AAA-ATTCGATGAGCTGGGAGAT-TTTAAATTT-----TTAATTTAGATT
gi|10 : tctgagattacttctaaatggggag-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------CCATGCA-----AAA--A---TAAC-AAA-AT-TGATGAGCTGGGAGAT-TG--AA--T---TA-TAA-TTAGATTtgcc
gi|11 : TCTAATAAAAAATTGAAT-C-TCC-CAG----------CTCATTAA-TTTTGTTG--GTTT---------T---GCG-----------------------------TGAGCTGGGGGAT-TT--AATTT---
gi|12 : atATCTAATTAAAA-TTAAAT-C-TCT-CAG----------CTCATCGA-TTTTGTTA--TTTT---------C---GCG-----AAA--A---T---------T-T-----------AGAT-TT--AATT------TTAA-TTAGATTaacgaga
gi|13 : TCTAATTCAAA-T-AAAT-C-TCC-CAACACTGAACTCCTCCTTGA--TTTGTTG--TTTT-CA------C---ATG-----AAA--------AC-GAC-AT-CAATGAG
gi|14 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCA---A-T----------------------------G-----AAA--T---T-G---------CGATGAGCTGGGAGAT-TT--AATTT---TAAT-A-TTAGA
gi|15 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCGTCGA-TTT--------------------------------------------C-A------CGATGAGCTGTGAGAT-TT--AATT------TTAA-TTAGATtg
gi|16 : ---GCG-----AAA--A---T-AC-AAACAT--GATAAGCTGCGGGATCTT--AA
gi|17 : tctgagtgacctaatggggtgtagatctcccacaAAAA-TTGAAT-C-TCC--AG----------CTCATTAAATTTTGTTG--GTTT-T-------T---GCG-----------------------------TGAGCTGGGGGAT-TT--AATT
gi|18 : taaaataaATCTAATTAAA---TAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----
gi|19 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTT
gi|2 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-T-------C---GTG-----AAA--A---T-AC-AAA-AT----TGAGCTGGGAGAT-TT--AATTTTGATGTTAA-TTAGATTGt
gi|3 : ATCTAATTAAAT-TAAAAT-CCTCCACAG----------CTCATCGA-TTTTGTTA--TTTT-CCCA----C---GCGA----AAA--A---TAACAAAA-AT-CGATGAGCTGGGAGA--TT--AATTT---TA--AA-TTA
gi|4 : ATCTAATTAAAA-TTAAATTC-TCC-CAG----------CTTATCGA-TTTTGTTA--TTTCGCA------C---GCG-----AAA--ATACT-AC-AAA-AT-CGATGAGCTTGGAGA--TT--AATTT---TA
gi|5 : ATCTAATTCAAA-TTAAAT-C-TCC-CAG-----------TCAT-GA-TTTTGTT--------C-------CAA-GTG-----AAA--A-----AC-AAA-AT-CAATAAGCTGGGAGAT-TT--AA------TATTAA-TTAGATTatt
gi|6 : ATCTAATTAGAA-TTAAAT-C-TCC-CAG----------CTCATTGA-TTTTGT----TTTT-A-------C---GCG-----AAA--A---A-AC-AAA-AT-CAATGAGGTGGGAGAT-TT------------TTAA-TTAGA
gi|7 : aATCCAATTAAAA-TTAAAT-C-TTC-CAG----------TTCATTGA-TTTTGTTG--TTTT-CGCTCCAAC---ATG-----AAA--A---CAAC-AAA-AT-CAATGAGCTGGGA
gi|8 : ATATAATTAAAA-TTAAAA-C-TCC-CAG----------CTCATCGA-TTTTGGTA--TT--------------------------------------AA-AT-CGATGAGCTGGGAGAT-TT--AA------TAATAA-TTAGATtg
gi|9 : tATTAAAA-TTAAAT-C-TCC-CAG----------CGCATTTA-TTTTGTTG--TTTT-C-------T--------------------TAAC-AAA-AT-GAATGATCTGGGAGAT-TT--AATTT---TAt
Alignments
lowQualScore : 1111111111 55555555555555555555555555555555555555555555 111111111
lowQualScore : 2 2 2 2 0000000000 0 2 555 11111111111111111111111111111111111111111111 2 33 777777777 4
lowQualScore : . . . . .......... . . ... ............................................ . .. ......... .
lowQualScore : 5 5 4 4 3333333333 1 4 888 11111111111111111111111111111111111111111111 7 77 999999999 0
consensus : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----AAA--A---T-AC-AAA-AT-CGATGAGCTGGGAGAT-TT--AATTT---TATTAA-TTAGATTG
Reference ( family-2420 ) : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----AAA--A---T-AC-AAA-AT-CGATGAGCTGGGAGAT-TT--AATTT---TATTAA-TTAGATTG
gi|1 : TTGTTAGATCTC-C-------C---ACGCTGAAAAATTA---T-AC-AAA-ATTCGATGAGCTGGGAGAT-TTTAAATTT-----TTAATTTAGATT
gi|10 : tctgagattacttctaaatggggag-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------CCATGCA-----AAA--A---TAAC-AAA-AT-TGATGAGCTGGGAGAT-TG--AA--T---TA-TAA-TTAGATTtgcc
gi|11 : TCTAATAAAAAATTGAAT-C-TCC-CAG----------CTCATTAA-TTTTGTTG--GTTT---------T---GCG-----------------------------TGAGCTGGGGGAT-TT--AATTT---
gi|12 : atATCTAATTAAAA-TTAAAT-C-TCT-CAG----------CTCATCGA-TTTTGTTA--TTTT---------C---GCG-----AAA--A---T---------T-T-----------AGAT-TT--AATT------TTAA-TTAGATTaacgaga
gi|13 : TCTAATTCAAA-T-AAAT-C-TCC-CAACACTGAACTCCTCCTTGA--TTTGTTG--TTTT-CA------C---ATG-----AAA--------AC-GAC-AT-CAATGAG
gi|14 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCA---A-T----------------------------G-----AAA--T---T-G---------CGATGAGCTGGGAGAT-TT--AATTT---TAAT-A-TTAGA
gi|15 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCGTCGA-TTT--------------------------------------------C-A------CGATGAGCTGTGAGAT-TT--AATT------TTAA-TTAGATtg
gi|16 : ---GCG-----AAA--A---T-AC-AAACAT--GATAAGCTGCGGGATCTT--AA
gi|17 : tctgagtgacctaatggggtgtagatctcccacaAAAA-TTGAAT-C-TCC--AG----------CTCATTAAATTTTGTTG--GTTT-T-------T---GCG-----------------------------TGAGCTGGGGGAT-TT--AATT
gi|18 : taaaataaATCTAATTAAA---TAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----
gi|19 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTT
gi|2 : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-T-------C---GTG-----AAA--A---T-AC-AAA-AT----TGAGCTGGGAGAT-TT--AATTTTGATGTTAA-TTAGATTGt
gi|3 : ATCTAATTAAAT-TAAAAT-CCTCCACAG----------CTCATCGA-TTTTGTTA--TTTT-CCCA----C---GCGA----AAA--A---TAACAAAA-AT-CGATGAGCTGGGAGA--TT--AATTT---TA--AA-TTA
gi|4 : ATCTAATTAAAA-TTAAATTC-TCC-CAG----------CTTATCGA-TTTTGTTA--TTTCGCA------C---GCG-----AAA--ATACT-AC-AAA-AT-CGATGAGCTTGGAGA--TT--AATTT---TA
gi|5 : ATCTAATTCAAA-TTAAAT-C-TCC-CAG-----------TCAT-GA-TTTTGTT--------C-------CAA-GTG-----AAA--A-----AC-AAA-AT-CAATAAGCTGGGAGAT-TT--AA------TATTAA-TTAGATTatt
gi|6 : ATCTAATTAGAA-TTAAAT-C-TCC-CAG----------CTCATTGA-TTTTGT----TTTT-A-------C---GCG-----AAA--A---A-AC-AAA-AT-CAATGAGGTGGGAGAT-TT------------TTAA-TTAGA
gi|7 : aATCCAATTAAAA-TTAAAT-C-TTC-CAG----------TTCATTGA-TTTTGTTG--TTTT-CGCTCCAAC---ATG-----AAA--A---CAAC-AAA-AT-CAATGAGCTGGGA
gi|8 : ATATAATTAAAA-TTAAAA-C-TCC-CAG----------CTCATCGA-TTTTGGTA--TT--------------------------------------AA-AT-CGATGAGCTGGGAGAT-TT--AA------TAATAA-TTAGATtg
gi|9 : tATTAAAA-TTAAAT-C-TCC-CAG----------CGCATTTA-TTTTGTTG--TTTT-C-------T--------------------TAAC-AAA-AT-GAATGATCTGGGAGAT-TT--AATTT---TAt
blockSeqs : . T C A CACTGAACTC A A CGCTCCAACATGAAAACAACAAAATCA C . TTTTGATGT .
blockSeqs : . . . . . . G CCCACGCGAAAAATAACAAAAATCG . . TTTTAA .
blockSeqs : . . . . . . A GCACGCGAAAATACTACAAAATCG . . TTTTA .
blockSeqs : . . . . . . G CCCATGCAAAAATAACAAAATTG . . TTA .
blockSeqs : . . . . . . G CCAAGTGAAAAACAAAATCA . . TTT .
blockSeqs : . . . . . . A ACGCGAAAAAACAAAATCA . . TTT .
blockSeqs : . . . . . . A CACATGAAAACGACATCA . . TAT .
blockSeqs : . . . . . . A TCGTGAAAATACAAAAT . . TAA .
blockSeqs : . . . . . . A CTTAACAAAATGA . . T .
blockSeqs : . . . . . . G CGCGAAAATTT . .
blockSeqs : . . . . . . A GAAATTGCG . .
blockSeqs : . . . . . . G AAATCG . .
blockSeqs : . . . . . . . TTGCG . .
blockSeqs : . . . . . . . TGCG . .
blockSeqs : . . . . . . . CACG
blockSeqs : . . . . .
blockSeqCons : A** ACGCGAAAAAACAAAATCG************************* ** TTT******
originalCons : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTT-C-------C---GCG-----AAA--A---T-AC-AAA-AT-CGATGAGCTGGGAGAT-TT--AATTT---TATTAA-TTAGATTG
finalCons : ATCTAATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGA-TTTTGTTA--TTTTACGCGAAAAAACAAAATCG-------------------------ATGAGCTGGGAGAT-TT--AATTT------TAA-TTAGATTG
Alignments
lowQualScore : 1111111111 55555555555555555555555555555555555555
lowQualScore : 44 2 2 2 2 0000000000 2 77777777777777777777777777777777777777 4 555 2 33 777777 2 2
lowQualScore : .. . . . . .......... . ...................................... . ... . .. ...... . .
lowQualScore : 22 9 9 5 5 9999999999 5 99999999999999999999999999999999999999 7 555 5 44 222222 7 9
consensus : ATCTAAT--TAAAA-TTAAAT-C-TCC-CAG----------CTCATCG-ATTTTGTT-A----TTT--T---ACG------C-GAAAA--A----ACAAAA-T-CGATGAGCTGGGAGA-TTTAA--TT------TT-AA-TTAGATTG
Reference ( family-2420 ) : ATCTAAT--TAAAA-TTAAAT-C-TCC-CAG----------CTCATCG-ATTTTGTT-A----TTT--T---ACG------C-GAAAA--A----ACAAAA-T-CGATGAGCTGGGAGA-TTTAA--TT------TT-AA-TTAGATTG
gi|1 : TTGTT-AGATCTCC--C---ACG------CTGAAAA--ATTATACAAAA-TTCGATGAGCTGGGAGATTTTAAATTT------TT-AATTTAGATT
gi|10 : tctgagattacttctaaatggggag-TCC-CAG----------CTCATCG-ATTTTGTT-A----TTT--TCCCATG------C-AAAAAT-A----ACAAAA-T-TGATGAGCTGGGAGA-TTGAA--TT------AT-AA-TTAGATTtgcc
gi|11 : TCTAAT--AAAAAATTGAAT-C-TCC-CAG----------CTCATTA-ATTTTGTTGG----TTT--T---GCG--------------------------------TGAGCTGGGGGA-TTTAA--TT------T
gi|12 : atATCTAAT--TAAAA-TTAAAT-C-TCT-CAG----------CTCATCG-ATTTTGTT-A----TTT--T----CG------C-G-------------AAAA-T-T--T--------AGA-TTTAA--TT------TT-AA-TTAGATTaacgaga
gi|13 : TCTAAT--TCAAA-T-AAAT-C-TCC-CAACACTGAACTCCTCCTTG-A-TTTGTT-G----TTT--TC--ACA------T-G--AA--A----ACGACA-T-CAATGAG
gi|14 : TCTAATATTAAAA-TTAAAT-C-TCC-CAG----------CTCATCGCA--------A----TTT--C---AT---------------------------------TGAGCTGGGAGA-TTTAA--TT------TT-AA-TTAGATTG
gi|15 : ATCTAAT--TAAAA-TTAAAT-C-TCC-CAG----------CTCGTCG-ATTT-------------------------------------------CA------CGATGAGCTGTGAGA-TTTAA--TT------TT-AA-TTAGAT
gi|17 : AA-TTAAAT-C-CCC-CAG----------CTCA----------------------------CG------C-AAAAACCA----ACAAAATT-TAATGAGCT-GGAGA-TTCAA--TT------TT-
gi|18 : taaaataaATCTAAT--TAAA---TAAAT-C-TCC-CAG----------CTCATCG-ATTTTGTT-A----TTT--T---CCG------C-G
gi|19 : AAA-T-CGATGAGCTGGGAGA-TTTAA--TT------TT-AA-TTAGATT
gi|2 : ATCTAAT--TAAAA-TTAAAT-C-TCC-CAG----------CTCATCG-ATTTTGTT-A----TTT--T---TCG------T-GAAAA--T----ACAAAA-T----TGAGCTGGGAGA-TTTAA--TTTTGATGTT-AA-TTAGATTG
gi|3 : ATCTAAT--TAAAT-TAAAAT-CCTCCACAG----------CTCATCG-ATTTTGTT-A----TTT--TCCCACG------C-GAAAA--ATA--ACAAAAAT-CGATGAGCTGGGAGA--TTAA--TT------TTAAA-TTA
gi|4 : ATCTAAT--TAAAA-TTAAATTC-TCC-CAG----------CTTATCG-ATTTTGTT-A----TTTCGC---ACG------C-GAAAAT-ACT--ACAAAA-T-CGATGAGCTTGGAGA--TTAA--TT------TT-AA-TT
gi|5 : ATCTAAT--TCAAA-TTAAAT-C-TCC-CAG-----------TCAT-G-ATTTTGTT--------C--C---AAG------T-GAAAA-------ACAAAA-T-CAATAAGCTGGGAGA-TTTAA--TA------TT-AA-TTAGATT
gi|6 : ATCTAAT--TAGAA-TTAAAT-C-TCC-CAG----------CTCATTG-ATTTTGT-------TTT--T---ACG------C-GAAAA--A----ACAAAA-T-CAATGAGGTGGGAGA-T------TT------TT-AA-TTAGA
gi|7 : a-TCC-CAG----------CTCATTG-ATTTTGTT-G----TTT--TC--ATGTTGGAGC-GAAAAC-A----ACAAAA-T-CAATGAACTGGAAGA-TTTAA--TT------TT-AA-TTGGATTG
gi|8 : ATATAAT--TAAAA-TTAAAA-C-TCC-CAG----------CTCATCG-ATTTTGGT-A----TT---------------------------------AAA-T-CGATGAGCTGGGAGA-TTTAA--TA------AT-AA-TTAGAT
gi|9 : tAT--TAAAA-TTAAAT-C-TCC-CAG----------ATCATTC-ATTTTGTT-A-------------A----------GAAAAC-A----ACAAAA-T-AAATGCGCTGGGAGA-TTTAA--TT------TT-AA-t
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): TCTGAGTGACCTAATGGGGTGTAGATCTCCCACAGCGAAAATACAAACATGATAAGCTGCGGGATCTTAA