lowQualScore : 3333 1111 33 2 333333333333 2222222 1 333333333333333333333333333333333333 111 8888888888888888888888888888888888888888888888888 33 2 33333 11 22 11 2222222222222222 111 222 55555555555555 11 22222222 333 11111 222 2 2 1 1111 444444444 11 22 444444444 111 2 222 33 1111
lowQualScore : 44 4444 888 99 5555 33 0 555555555555 999 6 1 7777777 2 2 666666666666666666666666666666666666 2 5 000 0 888 5 0000000000000000000000000000000000000000000000000 0 33 4 1 1 2 11111 00 22 0 11 4 4 444 3333333333333333 1 111 8 333 00000000000000 5 55 2 4 66 888 888 2 77 4 4 888888 1 88888888 5 555 6 55555 4 777 2 66 0 6 5 1 5 5 7 5 0000 0 999999999 5 33 999 00 0 8 5 000000000 0 555 5 8 0 333 6 1 6 6 88 7777 4 8 0
lowQualScore : .. .... ... .. .... .. . ............ ... . . ....... . . .................................... . . ... . ... . ................................................. . .. . . . . ..... .. .. . .. . . ... ................ . ... . ... .............. . .. . . .. ... ... . .. . . ...... . ........ . ... . ..... . ... . .. . . . . . . . . .... . ......... . .. ... .. . . . ......... . ... . . . ... . . . . .. .... . . .
lowQualScore : 00 6666 333 22 3333 33 0 555555555555 333 7 7 3333333 5 0 111111111111111111111111111111111111 3 7 000 1 888 0 5555555555555555555555555555555555555555555555555 2 88 4 7 3 9 77777 77 33 9 99 0 0 999 2222222222222222 2 333 0 000 00000000000000 2 11 7 0 99 888 888 0 66 4 4 111111 4 99999999 6 111 7 00000 4 111 3 99 9 9 7 4 7 7 1 9 6666 6 999999999 7 33 666 44 1 9 6 666666666 7 333 7 6 4 777 7 7 7 7 55 2222 8 0 8
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-T--TCT-T-TTATT--TCCTCC-TTTCGGAGATTAA-TGGAACAAAGTA-GTT---A-TA-AGAAATAT-TTACA-TTAG--GTAGAAAAATAAATGTA-------GG--TA----AAG-------AT-------ATAT-GC---TATGC---ATAATTTA-ACAATTCGAAG-GTGTTGA---TT----T---CAA-TGCC----TTATACAA-CAGGAAAAATTGTCAA-TGA-TAAGTTGCAATGC-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACT-CTT-T-T-GATT--A-TA-CG-C--G--GTCGTGGG--TA-CCC--TTCAAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCA-TAAACA-TCT-TCATATTCGACTAAAAGGGAC-AGATNAAAAT-A-ACAAATCTGTCATTAGAAGTGACA-GGNCAAGATGC-TA--TGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCG-T-TTCGGTACNAGAGTCCA----CAAATTA-GCAAATG-AGTT-AAC-AACT--TTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGC-GATG-CTAAGTGTA-CAG-TTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACAAT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( gi|2 ) : AAAATGGCCATTAATGAATTTCATTCATTCATGT--TCT-T-TTATT--TCCGTC-TTTCGGAGATTAAATGGAA-AAAGTA-GTT---A-TA-AGAAATAT-TTACAATTAA--GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAATTTA-ACAATTCGAAG-GTGTTGA---TT----T---CAA-TACC----TTATACAAACAGGAAAAATTATCAAATGA-TAAGTTGCAATGCCTAGACATATATAAATGAATAACATTTTAACAGTGAACT-ATT-T-T-GATT--A-TA-CA-C--A--GTCGTGGA--TA-CC---TTCAAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCA-TAAACA-TCT-TCGTATTCAACTAAGAGGGAT-AGATTAAAATCACACAAATCTGTCATTAGAAGTGACA-GGCCAAGATGC-TA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCG-T-TT-GGTACTAGAGTCCA----CAAATTAGGCAAATGAAGTT-AAC-AACT--TTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAG-GATG-C-AAGTGTA-C-G-TTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|6 : TTTCATTCATTC------TCTAT-TTATT--TCCTCT-TTTCGGAGATTAA-TGGAA-CAA----------A-TC-A-AAAT-T-TTACA-TTAG--TTA-AAAAATAA-TGTA-------GGTATA----AAGTTATGTTATTTGTACAATAT-GCATGCATGT---ATACTTTA-ACAATTCAA-------------CT----T-----A-TGAC----TTATGTA--CAGGAAATATTGTCA--TGG-CAAGTGGCAATGC-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACT-CTT-T-TTGATTGAA-CA-CG-C--A--GTCACGG---TG-CCA--CTCAAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CA-TAAACG-TCT-TCACGTTCGACTAAAAGGT-C-AGATAAAAAT---ACAAATCTGTCATTAGAAGTGACA-AGACAAGATGC-T--ATGACAA-GTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTG-T-TTCGGCACAAGAGTCCA----TTAATTA-GC------AGTT-AGCTAAC---TTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCA-AAGTGATG-CTAAATGTA-
gi|8 : tcTTTCATTCATT-AT----------TTATT--TCTTCC-CTTCGAAGATTAG-TGGAACAAAGTA-ATT---AATA-CAAAATAT-TTACATCTGACAGTAGAAAAATAA-TGTA-------GG--TA----AGG-------AT-------AT---GC---TATGC---AT---TTA-ACAATTCCAAG--TGTCGA---CT----T------------------TACAG---GAAAAAACCATCA--TGA-TAGGTTGCAAGGC-TAAACATG-ATAAACGAATAACATTTTAAC--T---CT--TT-T-T-GATTGAA-TA-CG-C--G--GTCATGGG--TA-CCC--TTCAAAAC-----A--AA-TATGTTAAAA-TCGTATTCGCTGTAT--GTAAAGG---TAAAG---ATAA-CGAACAGTCTATCAAATTC-ACTAaa
gi|3 : TTCATTCATTCATGT--TCT-T-TTATT--TCCGTC-TTTCGGAGATTAAATGGAA-AAAGTA-GTT---A-TA-AGAAATAT-TTACAATTAA--GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAATTTA-ACAATTCGAAG-GTGTTGA---TT----T---CAA-TACC----TTATACAAACAGGAAAAATTATCAAATGA-TAAGTTGCAATGCCTAGACATATATAAATGAATAACATTTTAACAGTGAACT-ATT-T-T-GATT--A-TA-CA-C--A--GTCGTGGA--TA-CC---TTCAAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCA-TAAACA-TCT-TCGTATTCAACTAAGAGGGAT-AGATTAAAATCACACAAATCTGTCATTAGAAGTGACA-GGCCAAGATGC-TA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCG-T-TT-GGTACTAGAGTCCA----CAAATTAGGCAAATGAAGTT-AAC-AACT--TTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAG-GATG-C-AAGTGTA-C-G-TTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAgatcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
gi|1 : TTCGTTCATTTATCCAATCT-T-T-ATT--TCT-TCATTTCGGAAATTA--TTGAA-AGA-------------A-AGCAATATAGCACAAT-----GTAGAAAAATAA---TA-------G---TATATCAAG-------TT-------ATGTTGT---T-TGT---ACAATATACATAACT----G-ATCTCGAGCGTT----TACACGA-TATG----TT-TATAA----GAAACATTGT--AATGA-TAAGTGGCAGCGT-TGGATATA-ACAAACACATAGCATCATAAT-TTGAACT-CTT-T-T-TTTA--A-CA-CG-T--G--GTCATGGG--TA-CCC--TTCAAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTTTC--CAAACA-CC----AGATTCAACT------GAA-AGATCAAA-TGA---AAATCTAT---------TGATA-G----AAATGC-TA--TGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTG-T-TTCGGTACAAGAATCCACCCTCAAATTA-GCGAA-----CT-AA-----T--TTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGC-AGTG-CTAAATGTA-TAG-TAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTAT-ATCTTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|4 : caTCATTCATTCAT-T--TCT-TCTTACTATTCCGTCCTTTCGGAGATTAA-TGGAACAAAGTA-GTTTTAA-TACAGAAATAT-T-ACA-TTA---GTAGAAAA-TAAATGTA-------G---TA------G-------AT-------ATAT-GC---TATGC---ATAATT-A-ACAATTCGAAGAGTGTTGA---TT----T---CAA-TACC----TTATACAAACAGGAAAA-TTATCAA-TGACTAAGTTGCAATGCCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACT-ATT-T-T-GATT--AATAACAAC--A--GTCGTGGA--TA-CCCTTTTCAAA-C-----ACGAGCTATGTTAAAAATCATATTCGT-GTAT--GT---GA---CAA-GTCT-TCA-TAAACA--CT-TCGTATTCAACTAAA--GGAT-AG-TTAAAA--ATACAA-TCTGTCATTA-AAGTGACA-GGC-AAGATGC-TA--TGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCG-T-TT-GGTACTAGAGTCCA----CAAATTA-GC-AATGAAGTT-AAC-AACT--TTT-ATTTCTATTGATGTGAG---------TGAATGTGTCCACAGC-GATG-CTAAGTGTA-CAG-TTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAAC-ATATTTttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|9 : -T-TTAAT--TCTTCC-TTTCGGAGATCG--TGAAACAAAGCACATTG--A-TA-CAACATAT-TTACA-TTAG--G-ACAAAAATAAATGTATCAATATA---TA----AAA-------AT-------A-GT-GC---TGTTTTTTATAATATA--CA-TTCG--------TAA---TTCAAAT---CAAGTGTC----TTGTTTTA-CAGGAAACATTGCCA--TGT-CAAGTGGCAATGCTTGGG---------------GACATTTCCCCA-TGAACT-CTT-T-T---TT--A-T-----T--A--GTCATG--------------TAAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAA-AAGACC-AGA-TAAAATAACCTAAATTTGTC--TA----TAACA-AGACAAAATGT-TACATGGC-ATGTTGAGAAATAT
gi|14 : gactcatccaatcATGTA-------GG--TA----AAG-------AT-------ATAT-GC---TATCC---ATAATTTA-ATAATTCGAAG--TGTTGA---TT----T---------------------------GAAAAATTATCA--TGA-TAAGTTGCAATGC-TATACATA-----ATAAATAACATTTTAACA-TGAACT-CTT-TCT-CATTTAA-TA-CA-C--A--GTCGTGGG--TA-CC---CT
gi|12 : TGC---ATGATTTG-AAAATT-AAGG-GTGTTTA-------------CAA--GCCATGTTTATG------AGATAAATTGTCA--TGA-TGAGTGGCTATACTGAAA-----GTAAAAGAATATCATTTTAACA-TGAACT-CCTAT-T-GATT--A-AA-CA-CGTG--GGCAAGGG--TACCC---TTCAAA-tc
gi|5 : aagaaatatgtatgcaagttatgctgtttgaacaat-TGAGTTGCAGTGC-TGGACA-----GAAC--ATAACAT-----CAATT--CT-ACT-T---GACT--A-AA-CA-C--GTGGTCATGGGAGCA-CCC--TTCAAAAC-----A-GA----TGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTT-TCA-TAAACA-TCT-TCATATTCAACTAAAAGAT-T-ACATAAAGATAA---AAATATATCAGTAGAAGTGACAAGGCCA-GATGCCT---TGGC-ATGTTGGAAA-CATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTG-CATT-AGTACAAGAGTCTA----ATAATTAA-CAA-----GGT-AACGAACTGCTTTCATATCT----------GT--------TGA-TGTATCCACAGC-GATG-CTAAATGTAGT-G-TTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATATT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTTaca
gi|10 : attcactcattcattcattcttgacttccccctcatggagaataattgaacaaagcaaatggttacgtgacttttacaatatgtatgcatttatattttaggaatagaaagtgtcgactttacttgctATAACATTTTAAC-GTATACTCATT-T-T-G-------------------GTCATGAA--TACCC---TTCAAA-CATGCAA-GAA-TATATCAAA----ATATTTGCT
gi|13 : tATTCACTGAAT--GT---GA---CTACGTCTA-CA-TACACA-TCT-T---ATTTGACTAAAAAGATC-AGATAAGAAT---ACAAATCTATCATTAGAGGTAACA------AGAC------------ATGTTGGAAAGCATTTA--TAAATGG-TTGGAACAAATAATACA-CTGTTC-GATATCCTG-T-TTCAGTACAAGAGTTCA----aaagctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|7 : CTA-CA-TAAACA-TC----ATATTCAACTAAAAG--ATCAGATGAAAAT---ACAAATCTATCATAAGAAGTGACA-AGACAAGATGC-TA--TGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCAA-TCTTC-AATATCTTGTT-TT-GCTAATAGAGTCCA----CGAATTA-GC-AATGTAGTT-AAC-TACA--TTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGC-GTTGCC-AACTGTA-T-ATTTGACTGAAG-AACTT-GAAATC-GGTAAAGT-AGGAGTTAGTGTTGATAAC-ATCTTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAa
gi|10 : ATTACAAGTAATG-AGTAAAGATGG-TA--TAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgcaagaatatatcaaaatatttgctaaagctaa----CAAATTAG-CA--TGTAGTTTAGC-TACT--TTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGC-GATG-CTAAG-GTA-CAG-TTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACAAT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
3 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|16 ): ATGTTAAAAACGTTCAAAACGTTTAGAATCCTGCTTCGGTACAAGGTCCACTACTTATTTAACGG
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG
Alignments
lowQualScore : 33333333333 1111 1 1111 222222222 1 11 2222222222222222 1111111 5555555555555555555555555555555555555555555555 111 1 22 33333333333333 11 111 333333333 11 1 1 3333333 1111111 22 222222222 1 1111
lowQualScore : 33333333333 0000 0 2 5 0000 5 222222222 3 0 0 9999 0 0 33 66 6666666666666666 6666666 5 888 777 4 777 4 4 3333333333333333333333333333333333333333333333 888 4 0 8 4 1 0 8 0 4 2 0 7 3 3 3 3 55 3 3 44 1 0 777 1 55 7 33333333333333 55 0 2 1 66 777 777 0 44 4 4 44 4 0 777 4 777777777 5 888 33 2 66 3 2 4 1 8 1 7777 2 8 6666666 4 1111111 00 2 2 888888888 5 8 0 5 5 1 4444 6
lowQualScore : ........... .... . . . .... . ......... . . . .... . . .. .. ................ ....... . ... ... . ... . . .............................................. ... . . . . . . . . . . . . . . . . .. . . .. . . ... . .. . .............. .. . . . .. ... ... . .. . . .. . . ... . ......... . ... .. . .. . . . . . . .... . . ....... . ....... .. . . ......... . . . . . . .... .
lowQualScore : 22222222222 6666 0 2 6 6666 0 111111111 4 0 4 0000 7 4 22 99 9999999999999999 2222222 0 888 888 4 888 4 4 2222222222222222222222222222222222222222222222 111 0 6 0 0 6 7 0 7 8 7 9 3 6 6 6 6 00 6 6 00 0 2 666 4 00 3 00000000000000 66 8 7 0 11 888 888 8 00 0 0 88 6 7 000 9 111111111 0 222 55 0 11 3 5 0 2 2 0 7777 9 0 8888888 4 6666666 11 8 8 222222222 1 7 1 7 7 4 6666 7
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GATT-AA-TA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGG-NACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCA----CNAATTA-GCAAAT-G-A-GTTAAC-NA----CTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACA-NT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( family-2411 ) : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GATT--A-TA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGG-GACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCA----CAAATTA-GCAAAT-G-A-GTTAAC-AA----CTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACA-AT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|1 : CATTCGTTCAT-TTATCCAATCTTT----ATTTCTTCATTTCGGAAATT-ATTGAAAGAAAG----CA-AT----ATA-G--------CAC-A--AT---GTAGAAAAATAATAGTATATC--AAG-------TT-------ATG-------TTGT---T-TGT---ACAATATACATAACTGATCTCGA---GCGTTTACACGAT--------A-TGT-----TTATA-------AGAAACATTGT--AATGA-TAAGTGGCAGCG-T-TGGATATA-ACAAACACATAGCATCATAATT-TGAACTC-T-T-T-T-TTTA--A-CA-CG-TGGTCATGG--GTACCCTT--C-AAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTTTC-CAA-ACA-CC----AGATTCAACTGAAAG-------ATCAAA-T-G---A---AAATCTAT---------TGATAG----AAATGCT--ATGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTGTTTCGGTACAAGAATCCACCCTCAAATTA-GC-----G-A-ACTAA---------TTTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGCAGTGCTAAATGTATAGTAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTATA-TC-TTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|10 : ATAACATTTTAACG-TATACTCAT-T-T-T-G---------------GTCATGA--ATACCCTT--C-AAA-CATGCAA-GAA-TATATCAAAA----TATTTGCTAAAttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|10 : tAAG-AATATATCAAAAT-ATTTGCT-AAAGCTA-AATTACAAGTAATGAGTAAAGATGGT--ATAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGA-----------------------ATCCTGCTTCGGTACGAGAAATCA----CTACTTA-TTTAACAG-T-GTTAGC-TA----ATTTC-ATTTCTgctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgc----CAAATTA-GCATGT-A-G-TTTAGC-TA----CTTTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGCGATGCTAAG-GTACAGTTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACA-AT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|12 : TGC---ATGAT-T---TGAA-AAT-T-AAGG-GTGTT-----TA-------CAA--GCCATGTTTATG-------AGATAAATTGTC-A-TGA-TGAGTGGCTATA-C-TGAA---A-GTAAAAGAATATCATTTTAACA-TGAACTC-C-TAT-T-GATTAAA-CA-CG-TGGGCAAGG--GTACCCTT--C-AAA-aacaatattcttccaaaatgttttttggatggaaaacctgagtattattgaacaagtcagaatgaacctgtctaaagaatattt
gi|13 : aagaaatatgtatgcaagttatgctgtttgaacaatATTCACTGAAT--GT---GA---CTACGTCTA-CATAC-ACA-TCT-T---ATTTGACTAAAAAG-ATCAGATAAGAAT-A----C--AAATCTATCATTAGAGGTAACA-----AGA----------C-ATGTTGGAAAGCATTTA--TAAATGGTT-GGAACAAATAATACA-CTGTTC-GATATCCTGTTTCAGTACAAGAGTTCA----aca
gi|14 : ATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATCC---ATAAT-T---TAAT-AAT-TCGAAG--TGTT-----GATT----T-------------------------GAAAAATTATC-A-TGA-TAAGTTGCAATG-C-TATACATA-ATA----AATAACATTTTAACA-TGAACTC-T-T-TCT-CATTTAA-TA-CA-CAGTCGTGG--GTACCCTT--C-a
gi|16 : GTTT-AGAATCCTGCTTCGGTACAAG-GTCCA----CTACTTA-
gi|2 : atgttaaaaacgttcaaaacTTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GATT--A-TA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAAATTAGGCAAAT-GAA-GTTAAC-AA----CTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACA-ATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAtttaacgg
gi|3 : aaaatggccattaatgaaTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GATT--A-TA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAAATTAGGCAAAT-GAA-GTTAAC-AA----CTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACA-ATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|4 : TCATTCATTCAT-TTCT------TCTTACTATTCCGTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTTTTAATACAGAAATATT-AC-ATTAG----TAGAAAA-TAAATGTAG-TA----G-------AT-------ATA-------T-GC---TATGC---ATAAT-T----AAC-AAT-TCGAAGAGTGTT-----GATT----TCAA-TACC----TTATAC-AAACAGGAAAA-TTATC-AATGACTAAGTTGCAATG-CCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACTA-T-T-T-T-GATT--AATAACAACAGTCGTGG--ATACCCTTTTC-AAA-C-----ACGAGCTATGTTAAAAATCATATTCG-TGTAT--GT---GA---CAA-GTCT-TCATAA-ACA--CT-TCGTATTCAACTAAA--G-GATAGTTAAAAAT-A----C--AA-TCTGTCATTA-AAGTGACAGG-CAAGATGCT--ATGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAAATTA-GCAA-T-G-AAGTTAAC-AA----CTTTTA-TTTCTATTGATGTGAGT---------GAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAACATAT-TT
gi|5 : TCATTCATTCAT-TC--------TTG----ACTTCCCCCTCATGGAGAAT-AATTGAACAAAGCAAATG-GTT---AC---GTGACTTTTAC-AATAT---GTA
gi|5 : attcac-TGAGTTGCAGTG-C-TGGACA---------GAACA------TAACA-TCAATTC-TAC-T-T-GACTAAA-CA-CG-TGGTCATGGGAGCACCCTT--CAAAA-C-----A-G----ATGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTT-TCATAA-ACA-TCT-TCATATTCAACTAAAAGATTAC--ATAAAGAT-A---A---AAATATATCAGTAGAAGTGACAAGGCCAGATGCC--TTGGC-ATGTTGG-AAACATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTGCATTAGTACAAGAGTCTA----ATAATTA-ACA------A-GGTAAC-GAACTGCTTTC-ATATCT----------GT--------TG-ATGTATCCACAGCGATGCTAAATGTAGTGTTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATA-TT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTTtgcatttatattttaggaatagaaagtgtcgactttacttgcttgagttgcagtgctggacagaacataacatcaattctacttgactaaacacgtggtcatgggagcacccttcaaaacagatgaaaaaaatcgttttcgctgaatatgacaaggttttcataaacatcttcatattcaactaaaagattacataaagataaaaatatatcagtagaagtgacaaggccagatgccttggcatgttggaaacatttataaacggcctggagcaaataatgcacggtttaatatcctgcattagtacaagagtctaataattaacaaggtaacgaactgctttcatatctgttgatgtatccacagcgatgctaaatgtagtgttgaccgaagaaacttgaaatcggtaaagtcggagttagtgtccataatatttttcgatgcagttttgtaataggaattgacagtttgttt
gi|6 : attcactcattcattcattcttgacttccccctcatggagaataattgaacaaagcaaatggttacgtgacttttacaatatgtatgcatttatattttaggaatagaaagtgtcgactttacttgctTTTCATTCATTC----TCTA-----TTT----ATTTCCTCTTTTCGGAGATT-AATGGAACAAA---------TC---A-----AAAT-TTTAC-ATTAG---TTA-AAAAATAA-TGTAGGTATAAAGTTATGTTATTTGTACAATA-------T-GCATGCATGT---ATACT-T---TAAC-AAT-TCAA---------------CT----T--A-TGAC----TTATGT-A--CAGGAAATATTGTC-A-TGG-CAAGTGGCAATG-C-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACTC-T-T-T-TTGATTGAA-CA-CG-CAGTCACGG---TGCCACT--C-AAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CATAA-ACG-TCT-TCACGTTCGACTAAAAGG-T-CAGATAAAAAT-A----C--AAATCTGTCATTAGAAGTGACAAGACAAGATGCT--ATGAC-AAGTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTGTTTCGGCACAAGAGTCCA----TTAATTA-GC-------A-GTTAGCTAA----C-TTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCAAAGTGATGCTAAATGTA
gi|7 : tcCTA-CATAA-ACA-TC----ATATTCAACTAAAAGA-T-CAGATGAAAAT-A----C--AAATCTATCATAAGAAGTGACAAGACAAGATGCT--ATGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCA-ATCTTC-AATATCTTGTTTTGCTAATAGAGTCCA----CGAATTA-GC-AAT-GTA-GTTAAC-TA----CATTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGCGTTGCCAACTGTATATTTGACTGAAG-AACTT-GAAATC-GGTAAAGTAGG-AGTTAGTGTTGATAACA-TC-TTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAaa
gi|8 : TTCATTCAT-TA--------TTT----ATTTCTTCCCTTCGAAGATT-AGTGGAACAAAG----TA-ATTA--ATA-CAAAATATTTAC-ATCTGACAGTAGAAAAAT-AATGTAGGTA--AGG----------------ATA-------T-GC---TATGC------AT-T---TAAC-AAT-TCCAA--GTGTC-----GACT----T---------------TAC-A---GGAAAAAACCATC--ATGA-TAGGTTGCAAGG-C-TAAACATG-ATAAACGAATAACATTTT-------AACTCTT-T-T-T-GATTGAA-TA-CG-CGGTCATGG--GTACCCTT--CAAAA-C-----A--AA-TATGTT-AAAATCGTATTCGCTGTAT--GTAAAGG---TAAAG---ATAACGA-ACAGTCTATCAAATTC-ACTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|9 : tACTCATCCAA-TC--------TTT----AATTCTTCCTTTCGGAGATC-G-TGAAACAAAG----CACATTG--ATA-CAACATATTTAC-ATTAG---G-ACAAAAATAAATGTA--TC--AAT-------AT-------ATAAAAATAGT-GC---TGTTTTTTATAAT-A---TA-C-A-T-TCG--------T-----AATTCAAATCAAGTGTC----TTGTTT-TA-CAGGAAACATTGCC-A-TGT-CAAGTGGCAATG-C-TTGG-----------GGA---CATTTCCCCA-TGAACTC-T-T-T-T---TT--A-T-----TAGTCATG-------------T-AAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAAAA-G-ACCAGAT-AAAAT-A---ACCTAAATTTGTC--TA----TAACAAGACAAAATGTTACATGGC-ATGTTGAGAAATATtcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG
Alignments
lowQualScore : 33333333333 1111 1 1111 222222222 1 11 2222222222222222 1111111 5555555555555555555555555555555555555555555555 111 1 11 33333333333333 11 111 333333333 11 1 1 1111111 22 222222222 1 1
lowQualScore : 33333333333 0000 0 2 5 0000 5 222222222 3 0 0 9999 0 0 33 66 6666666666666666 6666666 5 888 777 4 777 4 4 3333333333333333333333333333333333333333333333 888 4 0 8 4 1 0 8 0 4 2 0 7 3 3 3 8888 66 555555 0 777 1 55 7 33333333333333 55 0 2 1 66 777 777 0 44 4 4 44 4 777 4 777777777 5 888 33 2 66 3 2 4 1 8 1 1 8 9999999 4 1 00 2 2 888888888 5 8 0 5 5 1 1 1 6
lowQualScore : ........... .... . . . .... . ......... . . . .... . . .. .. ................ ....... . ... ... . ... . . .............................................. ... . . . . . . . . . . . . . . . .... .. ...... . ... . .. . .............. .. . . . .. ... ... . .. . . .. . ... . ......... . ... .. . .. . . . . . . . . ....... . . .. . . ......... . . . . . . . . .
lowQualScore : 22222222222 6666 0 2 6 6666 0 111111111 4 0 4 0000 7 4 22 99 9999999999999999 2222222 0 888 888 4 888 4 4 2222222222222222222222222222222222222222222222 111 0 6 0 0 6 7 0 7 8 7 9 3 6 6 6 5555 66 222222 2 666 4 00 3 00000000000000 66 8 7 0 11 888 888 8 00 0 0 88 6 111 9 111111111 0 222 55 0 11 3 5 0 2 2 0 0 0 7777777 4 0 11 8 8 222222222 1 7 1 7 7 4 0 4 7
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AATA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGG-NACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( family-2411 ) : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AATA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGG-NACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACNACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|1 : CATTCGTTCAT-TTATCCAATCTTT----ATTTCTTCATTTCGGAAATT-ATTGAAAGAAAG----CA-AT----ATA-G--------CAC-A--AT---GTAGAAAAATAATAGTATATC--AAG-------TT-------ATG-------TTGT---T-TGT---ACAATATACATAACTGATCTCGA---GCGTTTACACGAT--------A-TGT-----TTATA-------AGAAACATTGT--AATGA-TAAGTGGCAGCG-T-TGGATATA-ACAAACACATAGCATCATAATT-TGAACTC-T-T-T-T-T--TT-AACA-CG-TGGTCATGG--GTACCCTT--C-AAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTTTC-CAA-ACA-CC----AGATTCAACTGAAAG-------ATCAAA-T-G---A---AAATCTAT---------TGATAG----AAATGCT--ATGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTGTTTCGGTACAAGAATCCACC--CT---CAAAT-T-A-GCGAACTAATTTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGCAGTGCTAAATGTATAGTAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTATATC-TTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|10 : ATAACATTTTAACG-TATACTCAT-T-T-T-G---------------GTCATGA--ATACCCTT--C-AAA-CATGCAA-GAA-TATATCAAAA----TATTTGCTAAAttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|10 : tAAG-AATATATCAAAAT-ATTTGCT-AAAGCTA-AATTACAAGTAATGAGTAAAGATGGT--ATAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGA-----------------------ATCCTGCTTCGGTACGAGAAATCACTACTTA-TTTAACAG-T-GTTAGCTAATTTC-ATTTCTgctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgcCAAATTA-GCATGT-A-G-TTTAGCTACTTTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGCGATGCTAAG-GTACAGTTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACAAT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|12 : TGC---ATGAT-T---TGAA-AAT-T-AAGG-GTGTT-----TA-------CAA--GCCATGTTTATG-------AGATAAATTGTC-A-TGA-TGAGTGGCTATA-C-TGAA---A-GTAAAAGAATATCATTTTAACA-TGAACTC-C-TAT-T-GA-TTAAACA-CG-TGGGCAAGG--GTACCCTT--C-AAA-aacaatattcttccaaaatgttttttggatggaaaacctgagtattattgaacaagtcagaatgaacctgtctaaagaatattt
gi|13 : aagaaatatgtatgcaagttatgctgtttgaacaatATTCACTGAAT--GT---GA---CTACGTCTA-CATAC-ACA-TCT-T---ATTTGACTAAAAAG-ATCAGATAAGAAT-A----C--AAATCTATCATTAGAGGTAACA-----AGA----------C-ATGTTGGAAAGCATTTA--TAAATGGTT-GGAACAAATAATACA-CTGTTC-GATATCCTGTTTCAGTACAAGAGTTCAaca
gi|14 : ATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATCC---ATAAT-T---TAAT-AAT-TCGAAG--TGTT-----GATT----T-------------------------GAAAAATTATC-A-TGA-TAAGTTGCAATG-C-TATACATA-ATA----AATAACATTTTAACA-TGAACTC-T-T-TCT-CATTT-AATA-CA-CAGTCGTGG--GTACCCTT--C-a
gi|16 : GTTT-AGAATCCTGCTTCGGTACAAG-GTCCACTACTTA-
gi|2 : atgttaaaaacgttcaaaacTTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--ATA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAtttaacgg
gi|3 : aaaatggccattaatgaaTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--ATA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|4 : TCATTCATTCAT-TTCT------TCTTACTATTCCGTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTTTTAATACAGAAATATT-AC-ATTAG----TAGAAAA-TAAATGTAG-TA----G-------AT-------ATA-------T-GC---TATGC---ATAAT-T----AAC-AAT-TCGAAGAGTGTT-----GATT----TCAA-TACC----TTATAC-AAACAGGAAAA-TTATC-AATGACTAAGTTGCAATG-CCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT-AATAACAACAGTCGTGG--ATACCCTTTTC-AAA-C-----ACGAGCTATGTTAAAAATCATATTCG-TGTAT--GT---GA---CAA-GTCT-TCATAA-ACA--CT-TCGTATTCAACTAAA--G-GATAGTTAAAAAT-A----C--AA-TCTGTCATTA-AAGTGACAGG-CAAGATGCT--ATGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTA-GCAA-T-G-AAGTTAACAACTTTTA-TTTCTATTGATGTGAGT---------GAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAACATA-TTT
gi|5 : TCATTCATTCAT-TC--------TTG----ACTTCCCCCTCATGGAGAAT-AATTGAACAAAGCAAATG-GTT---AC---GTGACTTTTAC-AATAT---GTA
gi|5 : attcac-TGAGTTGCAGTG-C-TGGACA---------GAACA------TAACA-TCAATTC-TAC-T-T-GA-CTAAACA-CG-TGGTCATGGGAGCACCCTT--CAAAA-C-----A-G----ATGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTT-TCATAA-ACA-TCT-TCATATTCAACTAAAAGATTAC--ATAAAGAT-A---A---AAATATATCAGTAGAAGTGACAAGGCCAGATGCC--TTGGC-ATGTTGG-AAACATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTGCATTAGTACAAGAGTCTAATAATTA-ACAAGG-T-A-ACGAACTGCTTTC-ATATCT----------GT--------TG-ATGTATCCACAGCGATGCTAAATGTAGTGTTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATATT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTTtgcatttatattttaggaatagaaagtgtcgactttacttgcttgagttgcagtgctggacagaacataacatcaattctacttgactaaacacgtggtcatgggagcacccttcaaaacagatgaaaaaaatcgttttcgctgaatatgacaaggttttcataaacatcttcatattcaactaaaagattacataaagataaaaatatatcagtagaagtgacaaggccagatgccttggcatgttggaaacatttataaacggcctggagcaaataatgcacggtttaatatcctgcattagtacaagagtctaataattaacaaggtaacgaactgctttcatatctgttgatgtatccacagcgatgctaaatgtagtgttgaccgaagaaacttgaaatcggtaaagtcggagttagtgtccataatatttttcgatgcagttttgtaataggaattgacagtttgttt
gi|6 : attcactcattcattcattcttgacttccccctcatggagaataattgaacaaagcaaatggttacgtgacttttacaatatgtatgcatttatattttaggaatagaaagtgtcgactttacttgctTTTCATTCATTC----TCTA-----TTT----ATTTCCTCTTTTCGGAGATT-AATGGAACAAA---------TC---A-----AAAT-TTTAC-ATTAG---TTA-AAAAATAA-TGTAGGTATAAAGTTATGTTATTTGTACAATA-------T-GCATGCATGT---ATACT-T---TAAC-AAT-TCAA---------------CT----T--A-TGAC----TTATGT-A--CAGGAAATATTGTC-A-TGG-CAAGTGGCAATG-C-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACTC-T-T-T-TTGA-TTGAACA-CG-CAGTCACGG---TGCCACT--C-AAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CATAA-ACG-TCT-TCACGTTCGACTAAAAGG-T-CAGATAAAAAT-A----C--AAATCTGTCATTAGAAGTGACAAGACAAGATGCT--ATGAC-AAGTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTGTTTCGGCACAAGAGTCCATTAATTA-GC-------A-GTTAGCTAACTTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCAAAGTGATGCTAAATGTA
gi|7 : tcCTA-CATAA-ACA-TC----ATATTCAACTAAAAGA-T-CAGATGAAAAT-A----C--AAATCTATCATAAGAAGTGACAAGACAAGATGCT--ATGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCA-ATCTTC-AATATCTTGTTTTGCTAATAGAGTCCACGAATTA-GC-AAT-GTA-GTTAACTACATTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGCGTTGCCAACTGTATATTTGACTGAAG-AACTT-GAAATC-GGTAAAGTAGG-AGTTAGTGTTGATAACATC-TTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAaa
gi|8 : TTCATTCAT-TA--------TTT----ATTTCTTCCCTTCGAAGATT-AGTGGAACAAAG----TA-ATTA--ATA-CAAAATATTTAC-ATCTGACAGTAGAAAAAT-AATGTAGGTA--AGG----------------ATA-------T-GC---TATGC------AT-T---TAAC-AAT-TCCAA--GTGTC-----GACT----T---------------TAC-A---GGAAAAAACCATC--ATGA-TAGGTTGCAAGG-C-TAAACATG-ATAAACGAATAACATTTT-------AACTCTT-T-T-T-GA-TTGAATA-CG-CGGTCATGG--GTACCCTT--CAAAA-C-----A--AA-TATGTT-AAAATCGTATTCGCTGTAT--GTAAAGG---TAAAG---ATAACGA-ACAGTCTATCAAATTC-ACTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|9 : tACTCATCCAA-TC--------TTT----AATTCTTCCTTTCGGAGATC-G-TGAAACAAAG----CACATTG--ATA-CAACATATTTAC-ATTAG---G-ACAAAAATAAATGTA--TC--AAT-------AT-------ATAAAAATAGT-GC---TGTTTTTTATAAT-A---TA-C-A-T-TCG--------T-----AATTCAAATCAAGTGTC----TTGTTT-TA-CAGGAAACATTGCC-A-TGT-CAAGTGGCAATG-C-TTGG-----------GGA---CATTTCCCCA-TGAACTC-T-T-T-T----TT-ATTA------GTCATG-------------T-AAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAAAAGA-C-CAGAT-AAAAT-A---ACCTAAATTTGTC--TA----TAACAAGACAAAATGTTACATGGC-ATGTTGAGAAATATtcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG
Alignments
lowQualScore : 33333333333 1111 1 1111 222222222 1 11 2222222222222222 1111111 5555555555555555555555555555555555555555555555 111 1 11 33333333333333 11 111 333333333 11 1 1 1111111 22 222222222 1 1
lowQualScore : 33333333333 0000 0 2 5 0000 5 222222222 3 0 0 9999 0 0 33 66 6666666666666666 6666666 5 888 777 4 777 4 4 3333333333333333333333333333333333333333333333 888 4 0 8 4 1 0 8 0 4 2 0 7 3 3 3 8888 33 3 555555 0 777 1 55 3 44444444444444 55 0 2 1 66 777 777 0 44 4 4 44 4 777 4 777777777 5 888 33 2 66 3 2 4 1 8 1 1 8 9999999 4 00 2 2 888888888 5 8 0 5 5 1 1 1 6
lowQualScore : ........... .... . . . .... . ......... . . . .... . . .. .. ................ ....... . ... ... . ... . . .............................................. ... . . . . . . . . . . . . . . . .... .. . ...... . ... . .. . .............. .. . . . .. ... ... . .. . . .. . ... . ......... . ... .. . .. . . . . . . . . ....... . .. . . ......... . . . . . . . . .
lowQualScore : 22222222222 6666 0 2 6 6666 0 111111111 4 0 4 0000 7 4 22 99 9999999999999999 2222222 0 888 888 4 888 4 4 2222222222222222222222222222222222222222222222 111 0 6 0 0 6 7 0 7 8 7 9 3 6 6 6 5555 00 6 222222 2 666 4 00 6 33333333333333 66 8 7 0 11 888 888 8 00 0 0 88 6 111 9 111111111 0 222 55 0 11 3 5 0 2 2 0 0 0 7777777 4 11 8 8 222222222 1 7 1 7 7 4 0 4 7
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGGN-ACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( family-2411 ) : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGGN-ACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|1 : CATTCGTTCAT-TTATCCAATCTTT----ATTTCTTCATTTCGGAAATT-ATTGAAAGAAAG----CA-AT----ATA-G--------CAC-A--AT---GTAGAAAAATAATAGTATATC--AAG-------TT-------ATG-------TTGT---T-TGT---ACAATATACATAACTGATCTCGA---GCGTTTACACGAT--------A-TGT-----TTATA-------AGAAACATTGT--AATGA-TAAGTGGCAGCG-T-TGGATATA-ACAAACACATAGCATCATAATT-TGAACTC-T-T-T-T-T--TT-AA-CA-CG-TGGTCATGGG--TACCCTT--C-AAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTTTC-CAA-ACA-CC----AGATTCAACTGAAAG-------ATCAAA-T-G---A---AAATCTAT---------TGATAG----AAATGCT--ATGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTGTTTCGGTACAAGAATCCACC--CT---CAAAT-T-A-GCGAACTAATTTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGCAGTGCTAAATGTATAGTAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTATATC-TTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|10 : ATAACATTTTAACG-TATACTCAT-T-T-T-G----------------GTCATGAA--TACCCTT--C-AAA-CATGCAA-GAA-TATATCAAAA----TATTTGCTAAAttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|10 : tAAGA-ATATATCAAAAT-ATTTGCT-AAAGCTA-AATTACAAGTAATGAGTAAAGATGGT--ATAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGA-----------------------ATCCTGCTTCGGTACGAGAAATCACTACTTA-TTTAACAG-T-GTTAGCTAATTTC-ATTTCTgctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgcCAAATTA-GCATGT-A-G-TTTAGCTACTTTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGCGATGCTAAG-GTACAGTTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACAAT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|12 : TGC---ATGAT-T---TGAA-AAT-T-AAGG-GTGTT-----TA-------CAA--GCCATGTTTATG-------AGATAAATTGTC-A-TGA-TGAGTGGCTATA-C-TGAA---A-GTAAAAGAATATCATTTTAACA-TGAACTC-C-TAT-T-GA-TTAAA-CA-CG-TGGGCAAGGG--TACCCTT--C-AAA-aacaatattcttccaaaatgttttttggatggaaaacctgagtattattgaacaagtcagaatgaacctgtctaaagaatattt
gi|13 : aagaaatatgtatgcaagttatgctgtttgaacaatATTCACTGAAT--GT---GA---CTACGTCTA-CATAC-ACA-TCT-T---ATTTGACTAAAAAGA-TCAGATAAGAAT-A----C--AAATCTATCATTAGAGGTAACA-----AGA----------C-ATGTTGGAAAGCATTTA--TAAATGGTT-GGAACAAATAATACA-CTGTTC-GATATCCTGTTTCAGTACAAGAGTTCAaca
gi|14 : ATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATCC---ATAAT-T---TAAT-AAT-TCGAAG--TGTT-----GATT----T-------------------------GAAAAATTATC-A-TGA-TAAGTTGCAATG-C-TATACATA-ATA----AATAACATTTTAACA-TGAACTC-T-T-TCT-CATTT-AA-TA-CA-CAGTCGTGGG--TACCCTT--C-a
gi|16 : GTTT-AGAATCCTGCTTCGGTACAAG-GTCCACTACTTA-
gi|2 : atgttaaaaacgttcaaaacTTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--A-TA-CA-CAGTCGTGGA--TA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGGG-ATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAtttaacgg
gi|3 : aaaatggccattaatgaaTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--A-TA-CA-CAGTCGTGGA--TA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGGG-ATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|4 : TCATTCATTCAT-TTCT------TCTTACTATTCCGTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTTTTAATACAGAAATATT-AC-ATTAG----TAGAAAA-TAAATGTAG-TA----G-------AT-------ATA-------T-GC---TATGC---ATAAT-T----AAC-AAT-TCGAAGAGTGTT-----GATT----TCAA-TACC----TTATAC-AAACAGGAAAA-TTATC-AATGACTAAGTTGCAATG-CCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT-AA-TAACAACAGTCGTGGA--TACCCTTTTC-AAA-C-----ACGAGCTATGTTAAAAATCATATTCG-TGTAT--GT---GA---CAA-GTCT-TCATAA-ACA--CT-TCGTATTCAACTAAA--GG-ATAGTTAAAAAT-A----C--AA-TCTGTCATTA-AAGTGACAGG-CAAGATGCT--ATGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTA-GCAA-T-G-AAGTTAACAACTTTTA-TTTCTATTGATGTGAGT---------GAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAACATA-TTT
gi|5 : TCATTCATTCAT-TC--------TTG----ACTTCCCCCTCATGGAGAAT-AATTGAACAAAGCAAATG-GTT---AC---GTGACTTTTAC-AATAT---GTA
gi|5 : attcac-TGAGTTGCAGTG-C-TGGACA---------GAACA------TAACA-TCAATTC-TAC-T-T-GA-CT-AAACA-CG-TGGTCATGGGAGCACCCTT--C-AAAAC-----A-GA----TGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTT-TCATAA-ACA-TCT-TCATATTCAACTAAAAGATTACA--TAAAGAT-A---A---AAATATATCAGTAGAAGTGACAAGGCCAGATGCC--TTGGC-ATGTTGGAAA-CATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTGCATTAGTACAAGAGTCTAATAATTA-ACAAGG-T-A-ACGAACTGCTTTCA-TATCT----------GT--------TGA-TGTATCCACAGCGATGCTAAATGTAGTGTTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATATT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTTtgcatttatattttaggaatagaaagtgtcgactttacttgcttgagttgcagtgctggacagaacataacatcaattctacttgactaaacacgtggtcatgggagcacccttcaaaacagatgaaaaaaatcgttttcgctgaatatgacaaggttttcataaacatcttcatattcaactaaaagattacataaagataaaaatatatcagtagaagtgacaaggccagatgccttggcatgttggaaacatttataaacggcctggagcaaataatgcacggtttaatatcctgcattagtacaagagtctaataattaacaaggtaacgaactgctttcatatctgttgatgtatccacagcgatgctaaatgtagtgttgaccgaagaaacttgaaatcggtaaagtcggagttagtgtccataatatttttcgatgcagttttgtaataggaattgacagtttgttt
gi|6 : attcactcattcattcattcttgacttccccctcatggagaataattgaacaaagcaaatggttacgtgacttttacaatatgtatgcatttatattttaggaatagaaagtgtcgactttacttgctTTTCATTCATTC----TCTA-----TTT----ATTTCCTCTTTTCGGAGATT-AATGGAACAAA---------TC---A-----AAAT-TTTAC-ATTAG---TTA-AAAAATAA-TGTAGGTATAAAGTTATGTTATTTGTACAATA-------T-GCATGCATGT---ATACT-T---TAAC-AAT-TCAA---------------CT----T--A-TGAC----TTATGT-A--CAGGAAATATTGTC-A-TGG-CAAGTGGCAATG-C-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACTC-T-T-T-TTGA-TTGAA-CA-CG-CAGTCACGG---TGCCACT--C-AAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CATAA-ACG-TCT-TCACGTTCGACTAAAAGGT--CAGATAAAAAT-A----C--AAATCTGTCATTAGAAGTGACAAGACAAGATGCT--ATGAC-AAGTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTGTTTCGGCACAAGAGTCCATTAATTA-GC-------A-GTTAGCTAACTTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCAAAGTGATGCTAAATGTA
gi|7 : tcCTA-CATAA-ACA-TC----ATATTCAACTAAAAGAT--CAGATGAAAAT-A----C--AAATCTATCATAAGAAGTGACAAGACAAGATGCT--ATGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCA-ATCTTC-AATATCTTGTTTTGCTAATAGAGTCCACGAATTA-GC-AAT-GTA-GTTAACTACATTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGCGTTGCCAACTGTATATTTGACTGAAG-AACTT-GAAATC-GGTAAAGTAGG-AGTTAGTGTTGATAACATC-TTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAaa
gi|8 : TTCATTCAT-TA--------TTT----ATTTCTTCCCTTCGAAGATT-AGTGGAACAAAG----TA-ATTA--ATA-CAAAATATTTAC-ATCTGACAGTAGAAAAAT-AATGTAGGTA--AGG----------------ATA-------T-GC---TATGC------AT-T---TAAC-AAT-TCCAA--GTGTC-----GACT----T---------------TAC-A---GGAAAAAACCATC--ATGA-TAGGTTGCAAGG-C-TAAACATG-ATAAACGAATAACATTTT-------AACTCTT-T-T-T-GA-TTGAA-TA-CG-CGGTCATGGG--TACCCTT--CAAAA-C-----A--AA-TATGTT-AAAATCGTATTCGCTGTAT--GTAAAGG---TAAAG---ATAACGA-ACAGTCTATCAAATTC-ACTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|9 : tACTCATCCAA-TC--------TTT----AATTCTTCCTTTCGGAGATC-G-TGAAACAAAG----CACATTG--ATA-CAACATATTTAC-ATTAG---G-ACAAAAATAAATGTA--TC--AAT-------AT-------ATAAAAATAGT-GC---TGTTTTTTATAAT-A---TA-C-A-T-TCG--------T-----AATTCAAATCAAGTGTC----TTGTTT-TA-CAGGAAACATTGCC-A-TGT-CAAGTGGCAATG-C-TTGG-----------GGA---CATTTCCCCA-TGAACTC-T-T-T-T----TT-AT-TA------GTCATG-------------T-AAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAAAAGAC--CAGAT-AAAAT-A---ACCTAAATTTGTC--TA----TAACAAGACAAAATGTTACATGGC-ATGTTGAGAAATATtcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG
Alignments
lowQualScore : 33333333333 1111 1 1111 222222222 1 11 2222222222222222 1111111 5555555555555555555555555555555555555555555555 111 1 11 33333333333333 11 111 333333333 11 1 1 1111111 22 222222222 1 1
lowQualScore : 33333333333 0000 0 2 5 0000 5 222222222 3 0 0 9999 0 0 33 66 6666666666666666 6666666 5 888 777 4 777 4 4 3333333333333333333333333333333333333333333333 888 4 0 8 4 1 0 8 0 4 2 0 7 3 3 3 8888 33 3 555555 0 777 1 55 3 44444444444444 55 0 2 1 66 777 777 0 44 4 4 44 4 777 4 777777777 5 888 33 2 66 3 2 4 1 8 1 1 8 9999999 4 00 2 2 888888888 5 8 0 5 5 1 1 1 6
lowQualScore : ........... .... . . . .... . ......... . . . .... . . .. .. ................ ....... . ... ... . ... . . .............................................. ... . . . . . . . . . . . . . . . .... .. . ...... . ... . .. . .............. .. . . . .. ... ... . .. . . .. . ... . ......... . ... .. . .. . . . . . . . . ....... . .. . . ......... . . . . . . . . .
lowQualScore : 22222222222 6666 0 2 6 6666 0 111111111 4 0 4 0000 7 4 22 99 9999999999999999 2222222 0 888 888 4 888 4 4 2222222222222222222222222222222222222222222222 111 0 6 0 0 6 7 0 7 8 7 9 3 6 6 6 5555 00 6 222222 2 666 4 00 6 33333333333333 66 8 7 0 11 888 888 8 00 0 0 88 6 111 9 111111111 0 222 55 0 11 3 5 0 2 2 0 0 0 7777777 4 11 8 8 222222222 1 7 1 7 7 4 0 4 7
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGGN-ACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( family-2411 ) : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGGN-ACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|1 : CATTCGTTCAT-TTATCCAATCTTT----ATTTCTTCATTTCGGAAATT-ATTGAAAGAAAG----CA-AT----ATA-G--------CAC-A--AT---GTAGAAAAATAATAGTATATC--AAG-------TT-------ATG-------TTGT---T-TGT---ACAATATACATAACTGATCTCGA---GCGTTTACACGAT--------A-TGT-----TTATA-------AGAAACATTGT--AATGA-TAAGTGGCAGCG-T-TGGATATA-ACAAACACATAGCATCATAATT-TGAACTC-T-T-T-T-T--TT-AA-CA-CG-TGGTCATGGG--TACCCTT--C-AAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTTTC-CAA-ACA-CC----AGATTCAACTGAAAG-------ATCAAA-T-G---A---AAATCTAT---------TGATAG----AAATGCT--ATGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTGTTTCGGTACAAGAATCCACC--CT---CAAAT-T-A-GCGAACTAATTTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGCAGTGCTAAATGTATAGTAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTATATC-TTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|10 : ATAACATTTTAACG-TATACTCAT-T-T-T-G----------------GTCATGAA--TACCCTT--C-AAA-CATGCAA-GAA-TATATCAAAA----TATTTGCTAAAttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|10 : tAAGA-ATATATCAAAAT-ATTTGCT-AAAGCTA-AATTACAAGTAATGAGTAAAGATGGT--ATAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGA-----------------------ATCCTGCTTCGGTACGAGAAATCACTACTTA-TTTAACAG-T-GTTAGCTAATTTC-ATTTCTgctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgcCAAATTA-GCATGT-A-G-TTTAGCTACTTTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGCGATGCTAAG-GTACAGTTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACAAT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|12 : TGC---ATGAT-T---TGAA-AAT-T-AAGG-GTGTT-----TA-------CAA--GCCATGTTTATG-------AGATAAATTGTC-A-TGA-TGAGTGGCTATA-C-TGAA---A-GTAAAAGAATATCATTTTAACA-TGAACTC-C-TAT-T-GA-TTAAA-CA-CG-TGGGCAAGGG--TACCCTT--C-AAA-aacaatattcttccaaaatgttttttggatggaaaacctgagtattattgaacaagtcagaatgaacctgtctaaagaatattt
gi|13 : aagaaatatgtatgcaagttatgctgtttgaacaatATTCACTGAAT--GT---GA---CTACGTCTA-CATAC-ACA-TCT-T---ATTTGACTAAAAAGA-TCAGATAAGAAT-A----C--AAATCTATCATTAGAGGTAACA-----AGA----------C-ATGTTGGAAAGCATTTA--TAAATGGTT-GGAACAAATAATACA-CTGTTC-GATATCCTGTTTCAGTACAAGAGTTCAaca
gi|14 : ATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATCC---ATAAT-T---TAAT-AAT-TCGAAG--TGTT-----GATT----T-------------------------GAAAAATTATC-A-TGA-TAAGTTGCAATG-C-TATACATA-ATA----AATAACATTTTAACA-TGAACTC-T-T-TCT-CATTT-AA-TA-CA-CAGTCGTGGG--TACCCTT--C-a
gi|16 : GTTT-AGAATCCTGCTTCGGTACAAG-GTCCACTACTTA-
gi|2 : atgttaaaaacgttcaaaacTTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--A-TA-CA-CAGTCGTGGA--TA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGGG-ATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAtttaacgg
gi|3 : aaaatggccattaatgaaTTCATTCATTCATGTTCT------TTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AAAG----TA-GTT---ATA-AGAAATATTTACAATTAA---GTAGAAAAATAAATGTA-GTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAATGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--A-TA-CA-CAGTCGTGGA--TA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCGTATTCAACTAAGAGGG-ATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTAGGCAAAT-GAA-GTTAACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|4 : TCATTCATTCAT-TTCT------TCTTACTATTCCGTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTTTTAATACAGAAATATT-AC-ATTAG----TAGAAAA-TAAATGTAG-TA----G-------AT-------ATA-------T-GC---TATGC---ATAAT-T----AAC-AAT-TCGAAGAGTGTT-----GATT----TCAA-TACC----TTATAC-AAACAGGAAAA-TTATC-AATGACTAAGTTGCAATG-CCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT-AA-TAACAACAGTCGTGGA--TACCCTTTTC-AAA-C-----ACGAGCTATGTTAAAAATCATATTCG-TGTAT--GT---GA---CAA-GTCT-TCATAA-ACA--CT-TCGTATTCAACTAAA--GG-ATAGTTAAAAAT-A----C--AA-TCTGTCATTA-AAGTGACAGG-CAAGATGCT--ATGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCACAAATTA-GCAA-T-G-AAGTTAACAACTTTTA-TTTCTATTGATGTGAGT---------GAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAACATA-TTT
gi|5 : TCATTCATTCAT-TC--------TTG----ACTTCCCCCTCATGGAGAAT-AATTGAACAAAGCAAATG-GTT---AC---GTGACTTTTAC-AATAT---GTA
gi|5 : attcac-TGAGTTGCAGTG-C-TGGACA---------GAACA------TAACA-TCAATTC-TAC-T-T-GA-CT-AAACA-CG-TGGTCATGGGAGCACCCTT--C-AAAAC-----A-GA----TGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTT-TCATAA-ACA-TCT-TCATATTCAACTAAAAGATTACA--TAAAGAT-A---A---AAATATATCAGTAGAAGTGACAAGGCCAGATGCC--TTGGC-ATGTTGGAAA-CATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTGCATTAGTACAAGAGTCTAATAATTA-ACAAGG-T-A-ACGAACTGCTTTCA-TATCT----------GT--------TGA-TGTATCCACAGCGATGCTAAATGTAGTGTTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATATT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTTtgcatttatattttaggaatagaaagtgtcgactttacttgcttgagttgcagtgctggacagaacataacatcaattctacttgactaaacacgtggtcatgggagcacccttcaaaacagatgaaaaaaatcgttttcgctgaatatgacaaggttttcataaacatcttcatattcaactaaaagattacataaagataaaaatatatcagtagaagtgacaaggccagatgccttggcatgttggaaacatttataaacggcctggagcaaataatgcacggtttaatatcctgcattagtacaagagtctaataattaacaaggtaacgaactgctttcatatctgttgatgtatccacagcgatgctaaatgtagtgttgaccgaagaaacttgaaatcggtaaagtcggagttagtgtccataatatttttcgatgcagttttgtaataggaattgacagtttgttt
gi|6 : attcactcattcattcattcttgacttccccctcatggagaataattgaacaaagcaaatggttacgtgacttttacaatatgtatgcatttatattttaggaatagaaagtgtcgactttacttgctTTTCATTCATTC----TCTA-----TTT----ATTTCCTCTTTTCGGAGATT-AATGGAACAAA---------TC---A-----AAAT-TTTAC-ATTAG---TTA-AAAAATAA-TGTAGGTATAAAGTTATGTTATTTGTACAATA-------T-GCATGCATGT---ATACT-T---TAAC-AAT-TCAA---------------CT----T--A-TGAC----TTATGT-A--CAGGAAATATTGTC-A-TGG-CAAGTGGCAATG-C-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACTC-T-T-T-TTGA-TTGAA-CA-CG-CAGTCACGG---TGCCACT--C-AAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CATAA-ACG-TCT-TCACGTTCGACTAAAAGGT--CAGATAAAAAT-A----C--AAATCTGTCATTAGAAGTGACAAGACAAGATGCT--ATGAC-AAGTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTGTTTCGGCACAAGAGTCCATTAATTA-GC-------A-GTTAGCTAACTTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCAAAGTGATGCTAAATGTA
gi|7 : tcCTA-CATAA-ACA-TC----ATATTCAACTAAAAGAT--CAGATGAAAAT-A----C--AAATCTATCATAAGAAGTGACAAGACAAGATGCT--ATGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCA-ATCTTC-AATATCTTGTTTTGCTAATAGAGTCCACGAATTA-GC-AAT-GTA-GTTAACTACATTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGCGTTGCCAACTGTATATTTGACTGAAG-AACTT-GAAATC-GGTAAAGTAGG-AGTTAGTGTTGATAACATC-TTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAaa
gi|8 : TTCATTCAT-TA--------TTT----ATTTCTTCCCTTCGAAGATT-AGTGGAACAAAG----TA-ATTA--ATA-CAAAATATTTAC-ATCTGACAGTAGAAAAAT-AATGTAGGTA--AGG----------------ATA-------T-GC---TATGC------AT-T---TAAC-AAT-TCCAA--GTGTC-----GACT----T---------------TAC-A---GGAAAAAACCATC--ATGA-TAGGTTGCAAGG-C-TAAACATG-ATAAACGAATAACATTTT-------AACTCTT-T-T-T-GA-TTGAA-TA-CG-CGGTCATGGG--TACCCTT--CAAAA-C-----A--AA-TATGTT-AAAATCGTATTCGCTGTAT--GTAAAGG---TAAAG---ATAACGA-ACAGTCTATCAAATTC-ACTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|9 : tACTCATCCAA-TC--------TTT----AATTCTTCCTTTCGGAGATC-G-TGAAACAAAG----CACATTG--ATA-CAACATATTTAC-ATTAG---G-ACAAAAATAAATGTA--TC--AAT-------AT-------ATAAAAATAGT-GC---TGTTTTTTATAAT-A---TA-C-A-T-TCG--------T-----AATTCAAATCAAGTGTC----TTGTTT-TA-CAGGAAACATTGCC-A-TGT-CAAGTGGCAATG-C-TTGG-----------GGA---CATTTCCCCA-TGAACTC-T-T-T-T----TT-AT-TA------GTCATG-------------T-AAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAAAAGAC--CAGAT-AAAAT-A---ACCTAAATTTGTC--TA----TAACAAGACAAAATGTTACATGGC-ATGTTGAGAAATATtcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
blockSeqs : GTTCT TACT A A C CAAA C TTAATACAG A A GACA GG TA TTATGTTATTTGTACA AAAATAG . ATG TTT . . . . AGAGTGTTGATTTCAATACCTTATACAAACA AAA C C C C T A A G A A A C CAT AA A ACAACA GAG C TT A CATGCAAGAAT CA A A AG AAA TTA AT T G TA G TTA C ATTTGCT C AGT AC G CA G G A T C G T G TAACAG A AA T T TCACGAGAG T A . A T A A A
blockSeqs : GTTCT . A A C . . AATACA A A A GG . AT . . . . . . . . AGGTGTTGATTTCAATACCTTATACAAACA AAA . C . C T T T G T . . . TGA GA . CGTG A C . . CACGAGCT TA A A . . . AT . . T A AA A CACAC G GGC A G . G G . T C A A G AAATGA . AA G T CG T A . . T A A .
blockSeqs : TTCT . . A C . . GATACA A . A GG . AT . . . . . . . . AGGTGTTGATTTCAATACCTTATACAAACA AA . . . C . T A G . . . . GA GA . CACA G C . . CAGAAT TA A T . . . AT . . T A AT T CACAC G GGC A G . G T . T C A T . AAATGA . A G T T T T . . . A . .
blockSeqs : TCTA . . A C . . ATAAG T . G G . AT . . . . . . . . TAATTCAAATCAAGTGTCTTGTTTTACA A . . . C . T A . . . . . GA A . CACA G C . . CAGAAT TA G T . . . A . . T A GA T AACCT G AGG . . . . T . C T T A . ATGTA . A T T T T A . . . T . .
blockSeqs : TC . . A C . . ATAAG A . T G . AT . . . . . . . . GGGTGTTTACAAGCCATGTTTATG A . . . C . C A . . . . . GA A . CACA A C . . ACAGA AA G T . . . T . . T A GA A AC G AGA . . . . T . C C T A . AAGGT . A A A T C . . . . T . .
blockSeqs : TA . . G . . . ACG A . G G . AT . . . . . . . . CTTATGACTTATGTACA A . . . C . C A . . . . . GA A . CGTG A C . . CAAAT T A A . . . T . . T G GA A AC G AGA . . . . G . C T T A . AATGT . A C A T . . . . . T .
blockSeqs : TC . . . . . . A . . G . . . . . . . . . . . AGTGTCGACTTTACAG A . . . C . . G . . . . . GA A . CGCA A C . . A T . T . . . A . . T A T A AA G AGA . . . . G . T . A T . AATG . A . . . .
blockSeqs : . . . . . AGTGTTGATTT A . . . . . . A . . . . . GA . . CGCG G . . . . A . T . . . A . . T G T G AC . GG . . . . C . T . A T . . . A
blockSeqs : . . . . . . . . . . . . G . . . . . . . A A . . . . C . AC . . . . . . T . T G .
blockSeqs : . . . . . . . . . . . . . .
blockSeqCons : TTCN******* ATACG**** G* *** AGGTGTTGATTTCAATGCCTTATACAACG***************** A** GA** TA A* T* GA* AGN AATGN** T********
originalCons : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TTCT------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTT---ATA-AGAAATATTTAC-ATTAG---GTAGAAAAATAAATGTAGGTA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CAGGAAAAATTGTC-AATGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTATCATAA-ACA-TCT-TCATATTCGACTAAAAGGN-ACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAGGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAAAT-G-A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
finalCons : NNNNNNNNNNNNNNNNNNTTTCATTCATTCATTTCN-------TTT----ATTTCCTCCTTTCGGAGATT-AATGGAACAAAG----TA-GTTATACG----AAATATTTAC-ATTAG---GTAGAAAAATAAATGTAG-TA--AAG-------AT-------ATA-------T-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAGGTGTTGATTTCAATGCCTTATACAACG-----------------GGAAAAATTGTCA--TGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-TGA--TT-AA-TA-CG-CGGTCGTGGG--TACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTA-CATAA-ACA-TCT-TCATATTCGACTAAAAGGGA-CAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAAGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCACNAATTA-GCAATGN--A-GTTAACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG
Alignments
lowQualScore : 33333333333 1111 11 1111 111111 11111111111 222222222222222222222222222 1111111 1111 11111 77777777777777777777777777777 11 1 11 33333333333333 111 333333333 11 1 1 111111 22 222222222 1 1
lowQualScore : 11111111111 0000 22 5 0000 5 999999 666 6 0 77777777777 2 0 7 888888888888888888888888888 4444444 4 777 777 4 777 4 4 2222 00000 0 22222222222222222222222222222 0 11 4 4 0 8 4 1 0 8 0 4 2 0 7 3 3 3 8888 66 555555 0 777 1 55 7 33333333333333 55 0 2 1 66 777 777 0 8 4 4 44 4 0 777 4 777777777 2 1 2 33 2 66 3 2 4 1 8 1 7777 1 777 4 8 999999 4 00 2 2 888888888 5 8 0 5 5 1 1 1 6
lowQualScore : ........... .... .. . .... . ...... ... . . ........... . . . ........................... ....... . ... ... . ... . . .... ..... . ............................. . .. . . . . . . . . . . . . . . . . .... .. ...... . ... . .. . .............. .. . . . .. ... ... . . . . .. . . ... . ......... . . . .. . .. . . . . . . .... . ... . . ...... . .. . . ......... . . . . . . . . .
lowQualScore : 00000000000 6666 22 6 6666 0 000000 222 5 1 99999999999 5 1 3 666666666666666666666666666 4444444 4 888 000 0 000 0 0 8888 00000 4 88888888888888888888888888888 8 00 0 0 6 0 0 6 7 0 7 8 7 9 3 6 6 6 5555 66 222222 2 666 4 00 3 00000000000000 66 8 7 0 11 888 888 8 0 0 0 88 6 7 000 9 111111111 5 3 4 55 0 11 3 5 0 2 2 0 7777 0 000 0 0 000000 4 11 8 8 222222222 1 7 1 7 7 4 0 4 7
consensus : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TT------CCTTT----ATTTCCTCCTTTCGGAGATTAA-TGGAACAA----AGTA-GTT---A-TA-C-GAAATATTTACA-TTAG---GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CGGGAAAAATTGTC--A-TGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AATA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTA-CA-TAAACA-TCT-TCATATTCGACTAAAAGG-NACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAAGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCA----CNA---A-TTA-GC-AATG-AGTT-AACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
Reference ( family-2411 ) : NNNNNNNNNNNNNNNNNNTTTCATTCATTCAT-TT------CNTTT----ATTTCCTCCTTTCGGAGATTAA-TGGAACAA----AGTA-GTT---A-TA-C-GAAATATTTACA-TTAG---GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TGCC----TTATAC-AA-CGGGAAAAATTGTC--A-TGA-TAAGTTGCAATG-C-TAGACATA-ATAAACGAATAACATTTTAACA-TGAACTC-T-T-T-T-GA-TT-AATA-CG-CGGTCGTGG--GTACCCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCGTATTCGCTGNAT--GT---GA---CAAAGTCTA-CA-TAAACA-TCT-TCATATTCGACTAAAAGG-GACAGATNAAAAT-A---AC--AAATCTGTCATTAGAAGTGACAAGNCAAGATGCT--ATGGC-ATGTTGGAAAACATTTG--TAAACGGTTTGGAGCAAATAATGCA-CTGTTC-AATATCCCGTTTCGGTACNAGAGTCCA----CNA---A-TTA-GC-AATGNAGTT-AACTACTTTCAATTTCTATNGATGNGAGT--------TGAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTTGATAACANT-TTTCCATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|1 : CATTCGTTCAT-TTATCCAATCTTT----ATTTCTTCATTTCGGAAATTAT-TGAAAGAA----AGCA-AT----A-TAGC-ACAAT---------------GTAGAAAAATAA---TA-------G---TATATCAAG-------TT-------ATGTTGT---T-TGT---ACAATATACATAACTGATCTCGA---GCGTTTACACGAT--------A-TGT-----TTATA-------AGAAACATTGTA--A-TGA-TAAGTGGCAGCG-T-TGGATATA-ACAAACACATAGCATCATAATT-TGAACTC-T-T-T-T-T--TT-AACA-CG-TGGTCATGG--GTACCCTT--C-AAAAT-----A-GGA--ATGT-AAAAGTCGTATTTGCTAAAT--AT---GA---TAAAATCTT-TC-CAAACA-CC----AGATTCAACTGAAAG-------ATCAAA-T-G---A---AAATCTATTGATAGAA-------------ATGCT--ATGGC-ATGTTAAAAAACATTCG--TAGACGGTTTGGAACAAGTAATGCA-CTGTTC-AATATCCTGTTTCGGTACAAGAATCCACCCTCAA---A-TTA-GC-G---------AACTAATTTCA--TTCAATAGATGAGAG---------TGAATGCGTTCAGAGCAGTGCTAAATGTATAGTAGACTGAAGAAACTTGGAAGTC-GGTAAAATCGG-AAATACTGTTGATTATATC-TTTCCATGC-GATATTATGATAGGAAATGACAATTTGTTTACCA
gi|10 : ATAACATTTTAACG-TATACTCAT-T-T-T-G---------------GTCATGA--ATACCCTT--C-AAA-CATGCAA-GAA-TATATCAAAA----TATTTGCTAAAttattattcttccaaatgtgtttagttggaaaaactagtgttattgacgaacgctccaatgaatccttcagaggaata
gi|10 : tAAG-AATATATCAAAAT-ATTTGCT-AAAGCTA-AATTACAAGTAATGAGTAAAGATGGT--ATAGC-ATGTTGAAAAACGTTCA--TAAACGGTTTAGA-----------------------ATCCTGCTTCGGTACGAGAAATCA----CTACTTATTTA-AC-AGT---GTT-AGCTAATTTC-ATTTCTgctaaattacaagtaatgagtaaagatggtatagcatgttgaaaaacgttcataaacggtttagaatcctgcttcggtacgagaaatcactacttatttaacagtgttagctaatttcatttctgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|11 : tataacattttaacgtatactcattttggtcatgaatacccttcaaacatgc----CAA---A-TTA-GC-A-TGTAGTTTAGCTACTTTTA-TTTCTATTGATGTGAACG-------TGAATGTGTC-ACAGCGATGCTAAG-GTACAGTTGAC-GAAGAAACTT-GAAATCAAGTAAAGTCAG-AGTTAGTGTTGATAACAAT-TTTCCATGTAAGTATTGTAA-AGGAATTGACAGTTTgaagaaactttaaatggataaatgtgtgcagggaaaaacaatttaagaaatga
gi|12 : TGC---ATGAT-T---TGAA-AAT-T-AAGG-GTGTT-----TA-------CAA--GCCATGTTTAT-------GAGATAAATTGTC--A-TGA-TGAGTGGCTATA-C-TGAA---A-GTAAAAGAATATCATTTTAACA-TGAACTC-C-TAT-T-GA-TTAAACA-CG-TGGGCAAGG--GTACCCTT--C-AAA-aacaatattcttccaaaatgttttttggatggaaaacctgagtattattgaacaagtcagaatgaacctgtctaaagaatattt
gi|13 : aagaaatatgtatgcaagttatgctgtttgaacaatATTCACTGAAT--GT---GA---CTACGTCTA-CA-TACACA-TCT-T---ATTTGACTAAAAAG-ATCAGATAAGAAT-A----C--AAATCTATCATTAGAGGTAACAAGACA----------------TGTTGGAAAGCATTTA--TAAATGGTT-GGAACAAATAATACA-CTGTTC-GATATCCTGTTTCAGTACAAGAGTTCA----aca
gi|14 : ATGTA-------GG--TA----AAG-------AT-------ATAT-GC---TATCC---ATAAT-T---TAAT-AAT-TCGAAG--TGTT-----GATT----T-------------------------GAAAAATTATC--A-TGA-TAAGTTGCAATG-C-TATACATA-ATA----AATAACATTTTAACA-TGAACTC-T-T-TCT-CATTT-AATA-CA-CAGTCGTGG--GTACCCTT--C-a
gi|16 : GTTT-AGAATCCTGCTTCGGTACAAG-GTCCA----CTA---C-TTA-
gi|2 : atgttaaaaacgttcaaaacTTTCATTCATTCATGTT------CTTTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AA----AGTA-GTT---A-TA-A-GAAATATTTACAATTAA---GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAA-TGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--ATA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCA-TAAACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAA---A-TTAGGCAAATGAAGTT-AACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACAtttaacgg
gi|3 : aaaatggccattaatgaaTTCATTCATTCATGTT------CTTTT----ATTTCCGTCTTTCGGAGATTAAATGGAA-AA----AGTA-GTT---A-TA-A-GAAATATTTACAATTAA---GTAGAAAAATAAATGTA-------G---TA----AAG-------AT-------ATAT-GC---TATGC---ATAAT-T---TAAC-AAT-TCGAAG-GTGTT-----GATT----TCAA-TACC----TTATACAAA-CAGGAAAAATTATCAAA-TGA-TAAGTTGCAATGCC-TAGACATATATAAATGAATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT--ATA-CA-CAGTCGTGG--ATA-CCTT--C-AAA-C-----A-GAA-TATGTTAAAAATCATATTCGTTGTAT--GT---GA---CAAAGTCTATCA-TAAACA-TCT-TCGTATTCAACTAAGAGG-GATAGATTAAAATCAC--AC--AAATCTGTCATTAGAAGTGACAGGCCAAGATGCTA-ATGGCGATGTTGGAAAACATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAA---A-TTAGGCAAATGAAGTT-AACAACTTTTAATTTCTATGGATGTGAGT--------TGAATGTGTCCACAAGGATGC-AAGTGTAC-GTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAGTCGTTAGTGTTGATAACAATATTTCTATGT-AGTATTGTAATAGGAATTGACAGTTTGTTTAACA
gi|4 : TCATTCATTCAT-TT------CTTCTTACTATTCCGTCCTTTCGGAGATTAA-TGGAACAA----AGTA-GTTTTAA-TA-CAGAAATATT-ACA-TTAG----TAGAAAA-TAAATGTA-------G---TA------G-------AT-------ATAT-GC---TATGC---ATAAT-T----AAC-AAT-TCGAAGAGTGTT-----GATT----TCAA-TACC----TTATAC-AAACAGGAAAA-TTATC--AATGACTAAGTTGCAATG-CCTAGACATA-ATAAAT-AATAACATTTTAACAGTGAACTA-T-T-T-T-GA-TT-AATAACAACAGTCGTGG--ATACCCTTTTC-AAA-C-----ACGAGCTATGTTAAAAATCATATTCG-TGTAT--GT---GA---CAA-GTCTT-CA-TAAACA--CT-TCGTATTCAACTAAA--G-GATAGTTAAAAAT-A----C--AA-TCTGTCATTA-AAGTGACA-GGCAAGATGCT--ATGGCGATGTTGGAAAA-ATTTG--TAAACGGTTTAGAGCAAATAATGCAGCTTTTC-AATATCTCGTTT-GGTACTAGAGTCCA----CAA---A-TTA-GC-AATGAAGTT-AACAACTTTTA-TTTCTATTGATGTGAGT---------GAATGTGTCCACAGCGATGCTAAGTGTACAGTTGACTGAAGAAACTT-GAAATC-AGTAAAGTCAG-AGTTAGTGTTGATAACATA-TTT
gi|5 : TCATTCATTCAT-T--------CTTG----ACTTCCCCCTCATGGAGAATAA-TTGAACAAAGCAAATG-GTT------A-C-GTGACTTTTAC--------------------AAT------------------------------AT-------GTAT-GC----ATTT---ATATT-T---TAGG-AAT--AGAAA-GTGTC-----GACT----T---------------TAC-------------TTG-C--T-TGA----GTTGCAGTG-C-TGGACA---------GAACA------TAACA-TCAATTC-TAC-T-T-GA-CTAAACA-CG-TGGTCATGGGAGCACCCTT--CAAAA-C-----A-G----ATGAAAAAAATCGTTTTCGCTGAAT--AT---GA---CAAGGTTTT-CA-TAAACA-TCT-TCATATTCAACTAAAAGATTAC--ATAAAGAT-A---A---AAATATATCAGTAGAAGTGACAAGGCCAGATGCC--TTGGC-ATGTTGG-AAACATTTA--TAAACGGCCTGGAGCAAATAATGCA-CGGTTT-AATATCCTGCATTAGTACAAGAGTCTA----ATA---A-TTA-AC-AAGGTAACG-AACTGCTTTC-ATATCT----------GT--------TG-ATGTATCCACAGCGATGCTAAATGTAGTGTTGACCGAAGAAACTT-GAAATC-GGTAAAGTCGG-AGTTAGTGTCCATAATATT-TTTCGATGC-AGTTTTGTAATAGGAATTGACAGTTTGTTT
gi|6 : attcacTTTCATTCATTC---TC------TATTT----ATTTCCTCTTTTCGGAGATTAA-TGGAACAA----A------------T--C-AAAAT-TTTACA-TTAG---TTA-AAAAATAA-TGTA-------GGTATA----AAGTTATGTTATTTGTACAATAT-GCATGCATGT---ATACT-T---TAAC-AAT-TCAA---------------CT----T--A-TGAC----TTATGT-A--CAGGAAATATTGTC--A-TGG-CAAGTGGCAATG-C-TAGACATA-ACAAACGAATAG---TTTAACA-TGAACTC-T-T-T-TTGA-TTGAACA-CG-CAGTCACGG---TGCCACT--C-AAA-----------A--ATGTT----------TTCGCTGTATAGGT---AATTACAGAGTCTA-CA-TAAACG-TCT-TCACGTTCGACTAAAAGG-T-CAGATAAAAAT-A----C--AAATCTGTCATTAGAAGTGACAAGACAAGATGCT--ATGAC-AAGTTGGAAAACATTTGCACAAACGGTTTGGAGCAAATAATGCA-CTGTTCAAATATCCTGTTTCGGCACAAGAGTCCA----TTA---A-TTA-GC------AGTT-AGCTAACTTCA--TTCTGTAGATGAGACTCACGAGAGTGAATATATCCAAAGTGATGCTAAATGTA
gi|7 : tcCTA-CA-TAAACA-TC----ATATTCAACTAAAAGA-T-CAGATGAAAAT-A----C--AAATCTATCATAAGAAGTGACAAGACAAGATGCT--ATGGC-ATGTTGGAAAACATTTA--TAAACGGTTTAGAGAAAATAATGCA-ATCTTC-AATATCTTGTTTTGCTAATAGAGTCCA----CGA---A-TTA-GC-AATGTAGTT-AACTACATTC-ATTTCTATCGATGAGAG---------TGAATGTATCTACGGCGTTGCCAACTGTATATTTGACTGAAG-AACTT-GAAATC-GGTAAAGTAGG-AGTTAGTGTTGATAACATC-TTTCCATGT-AATATTGTAATAGGAATTGACAGTTTGATTAACAaa
gi|8 : TTCATTCAT-T--------ATTT----ATTTCTTCCCTTCGAAGATTAG-TGGAACAA----AGTA-ATT---AATA-C-AAAATATTTACA-TCTGACAGTAGAAAAATAA-TGTA-------GG--TA----AGG-------AT-------AT---GC---TATGC---AT----T---TAAC-AAT-TCCAAG--TGTC-----GACT----T---------------TAC-A---GGAAAAAACCATC--A-TGA-TAGGTTGCAAGG-C-TAAACATG-ATAAACGAATAACATTTT-------AACTCTT-T-T-T-GA-TTGAATA-CG-CGGTCATGG--GTACCCTT--CAAAA-C-----A--AA-TATGTT-AAAATCGTATTCGCTGTAT--GTAAAGG---TAAAG-ATA--A-CGAACAGTCTATCAAATTC-ACTAGAatattcttccaagtgtttgtggatggaaaactggtattattgacatatattagaaggaacctctctaaag
gi|9 : tACTCATCCAA-T--------CTTT----AATTCTTCCTTTCGGAGATCG--TGAAACAA----AGCACATTG--A-TA-C-AACATATTTACA-TTAG---G-ACAAAAATAAATGTATCAATATA---TA----AAA-------AT-------A-GT-GC---TGTTTTTTATAAT-A---TA-C-A-T-TCG--------T-----AATTCAAATCAAGTGTC----TTGTTT-TA-CAGGAAACATTGCC--A-TGT-CAAGTGGCAATG-C-TTGG-----------GGA---CATTTCCCCA-TGAACTC-T-T-T-T----TT-ATTA------GTCATG-------------T-AAA-------------------AAAAATCATAATTGCTAAAT--GT---GA---TAAAATCTA-CATTATACA-TTT-TCATAGTCGACTAAAA-G-ACCAGAT-AAAAT-A---ACCTAAATTTGTC--TA----TAACAAGACAAAATGTTACATGGC-ATGTTGAGAAATATtcactaaaaaaagatctgacaacaagctagaattccaacatttgtaaagaagt
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|15 ): TTAAAACAAAAACTGAAGATGCTTCAAAATCCAATCCGTGTAATGTAAAGGCAAAGATAACGAACAGTC
Unaligned ( gi|17 ): CTGAAGAAACTTTAAATGGATAAATTTGTGCAGGGAAAAACATTGTAATTTGTGAAGAAAAG