lowQualScore : 111111111111111111111111111111111111111
lowQualScore : 1 4 4 4 55 2222 222 4 333 333333 22 222 3333 111 111 666666666666 3333 1 1 11 1 222222 1111 111 22 66666666666 3333 444 4444 111 1 2 33 222222 11 7777777777777777777777 33333 11 6666666666666 22 44444444444444444 333333333 222 2222222222 1 2 1 22222 777777777777777777 2 1 999999999999999999999999999999999999999 3 55555555 11 444444444444444 2 22222 11 11 5555555555555555555 22 2222 111 11 44444444 666666666666666666666666666666666666 11111 111 111 11 2222 22222 222222222 111 444444444 11 4
lowQualScore : 7 6 6 0 0 0 6 55 4 2222 000 0 999 7 999999 22 2 2 4 777 0 6 6666 777 777 0 4 777777777777 0000 1 1 77 2 5 6 0 3 22 0 888888 9999 666 00 3 55555555555 1111 8 222 4444 777 0 0 00 444444 44 7 0 9 5555555555555555555555 33333 4 1 6 33 9999999999999 4 6 22 33333333333333333 0 0 6 333333333 999 8888888888 3 2 7 2 9 0 55555 444444444444444444 6 6 3 555555555555555555555555555555555555555 1 7 77777777 88 0 444444444444444 3 0 99999 1 77 44 4444444444444444444 7 22 2 2 2222 2 2 2 4 2 3 8 777 999 33 88888888 3 999999999999999999999999999999999999 66666 3 4444 8 7 6 444 111 2 2 11 1111 99 6 33333 1 000000000 2 1 5 000 222222222 88 0 0
lowQualScore : . . . . . . . .. . .... ... . ... . ...... .. . . . ... . . .... ... ... . . ............ .... . . .. . . . . . .. . ...... .... ... .. . ........... .... . ... .... ... . . .. ...... .. . . . ...................... ..... . . . .. ............. . . .. ................. . . . ......... ... .......... . . . . . . ..... .................. . . . ....................................... . . ........ .. . ............... . . ..... . .. .. ................... . .. . . .... . . . . . . . ... ... .. ........ . .................................... ..... . .... . . . ... ... . . .. .... .. . ..... . ......... . . . ... ......... .. . .
lowQualScore : 0 0 0 0 0 0 0 00 0 0000 555 0 000 3 000000 55 5 5 0 555 8 0 0000 555 555 7 0 000000000000 0000 0 0 00 3 5 5 2 2 55 0 888888 5555 222 88 0 77777777777 7777 3 000 0000 555 0 0 00 777777 77 3 7 0 8888888888888888888888 33333 0 0 7 00 0000000000000 7 7 00 77777777777777777 7 7 7 000000000 333 0000000000 3 5 5 5 0 0 00000 999999999999999999 7 7 3 777777777777777777777777777777777777777 7 3 77777777 33 7 333333333333333 3 7 33333 0 00 77 7777777777777777777 3 33 5 5 0000 5 5 5 0 5 7 3 555 000 88 00000000 2 444444444444444444444444444444444444 66666 2 8888 4 9 0 666 777 5 5 88 0000 22 7 44444 2 444444444 8 0 8 000 777777777 33 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTNTGCAGAATATGCGTTATTGTTGTCCATGAATTGCGAGCA-TGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACATACGCTATGGGCATTTTAAAAANGNCNTGCANCTTCTCGCTTCGTCTT---ATTGATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACATATNCAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATNTCGTT-TTATTC------ACATTTT--GAGAAT-G-ATG-TANACTGGTACAACA-G-AAATAGA-TTATAATAGACAGCATAAGGT-TACGACGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCGTAATAAATAGAAATG-A----A---------------AATGACAGG-----AATNCATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATGTTTTAANTTTTGTGTTGACACATGTTTAGTGGCAGAAGGCT--TAATTGTTTTCAATAATAGAGTCGATATTCTAACAGCTGACGATATAACACCCAAATGGAGTAGA-AAA---AACAATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGCGA-TGTCTCCCACTT-TATGCTTCCTGAGGGGCNACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTTTCGCAGCCAATGTGGAATTT-AGAAGCCGTGCGAA--------------------T--------------CCACAGTGT-GGACATTCTGAAG----TGTATCT--AAAAAAAATCATAGCAATTACCATTAAA-----AAA--ATC--TGTG-ATAAT-AGGCATGTAC-CGTATATAAAAAAATAATA---------TACA------TAGAAA-ATTATTTTAATGTGATTCTTCTANANCTTTACTGTTATTGANATTCCTTNGAATTNTAATTTGTCNACCAATTCACNACCTCACCCTTACCGAATCAAACATTG---AGCGTATGGAAATNAAAAGCATA--AAT-------GAACAANTANA---GTGGTA-T--TGTG--------AAACA-T-GATGCCCCGNGATTNCAACAAAGTGGAAATCATTTTAGTGAGTAATTTTCAAAGNAGGT---CAGAGGT-NAATTTCAAGG--TCA--CA-AGCTNGATACNAATGG---G-GNATTCTCACAAGAAATGCANATGCTANNT---AC-GA--AAAATACGGATTGGCTTGTATTTGACGTCATATGT
Reference ( gi|1 ) : CAATGCTTCCAATTTAGGACATGTTATGACTTAAGCTCTTGAGTACACAATATCTTCCTCAGCGCAAACTACGTGACGTCTTATGAAATTGAATTTCCTGCTGTACATACATGTCTATTAATCATCATTATGAGCATTCATCA-CACTGAGATATGCGATAAAAAGATTATGCAGAATATGCAT-AT-GTTGTCCATGAAT-GCGAGCA-T-TCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAA-CGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTTTCGCT-CTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAAACTTTAAAACTCTTCATTTGTTTGAAAGTCGTT-TTATTC------ACATTTT--GAGAAT-G-ATA-TAAACTG-TA-AACA-G-AAATAGA-T-GTAATAGACAGCATTAGGTTTATGATGAGTCTAATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCT-AAAATATTGTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAGTG-A----A---------------AATGACAGG-----AATACATAAACAAACAAAATTTATGGTAAACTGCACGTGATTGTTCATGT-ATTGTTAGAATGTTTTAAATTGTGTGTTGACACAGTTTTAGTGGCAGAAGGCT--TAATCATTT--AATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAA---AACAATCGCTCCGTAAATG-ACAGTTTTGTCAGCAGCTTTGTGA-TGTCTCCCACTTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTGTCACAGCCAATGTGGAA-TT-AGAAGCCGTG-AAA--------------------T--------------CCACAGTGTGGGACATTCTGAAGTACATATATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATCTATGTGCATGAT-AGGCATATATATGTATATAAAAAAATAATA---------TACA------TAGAAACATTATTTTAATGTGATTCTTCTACAGCTTTACTG-TA-TGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCTAACATTG---AGCGTATGGAAATCAAAAGCATA--AAT-------AAACAAATACA---GTGGTA----TGTG--------AACCA-T-GATGCCTCGCGATTACAATAGAGTGGAATTCATTTTAGTGAGTACTCTTCAATGAAGGT---CAGAGAT-GAATTTCAA-G--TCA--CA-AACTAGA-ACTAATGG---G-ATATTCTTACAAGAAATGCACATGCTAAAT---ACGGA--AAAGTACGGATTGGTTTGTATTTGAC-TCATATGT
gi|2 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTATGCAGAATATGCAT-ATTGTTGTC-ATGAATTGCGAGCA-TGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAGACTTTAAA-CTCTTCATTTGTTTGAAAGTCGTT-TTATTC------ACATTTT--GAGAATCG-ATAATAAACTGGTACAACA-GGAAATAGA-TTGTAATAGACAGCATTAGGT--ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-T-AAAACATCT-AAAATATGTTGCTCTTTTAA-CG-TTCAT-CATAATAAATGGAAATG-A----ACTGTAACTTAATTAAAATGACAGG-----AATACATAAACAAGCAACATTTATGGTAAACTGCATGTGATTGTTCA-GTGATTGT-AATATGTTTTAAATTGTGTGTTGACACATTTTTAGTGGCAGAAGG-T--TAATAGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAA---AACAATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGA-TGTCTCCCA-TTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT--------------A--TGGTTGTCACAGCCAATGTGGAATTT-AGAAGCCGTGTAAA--------------------T--------------CCACAGTGT-GGACATTCTGAAGTACCTGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-ATGTGCATGAT-AGGCATATATATGTATATAAAAAAATAATA---------TACA------TAG-AACATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTA-TGAGATTCCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCCAATCTAACATTG---AGCGTATGGAAATCAAAAGCATA--AAT-------AAACAAATACA---NNNNNN----NNNN--------NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTACTTCTCAATGTAGGT---CAGAGAT-GAATTTNNN-N--NNN--NN-NNNNNNN-NNNNNNNN---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-GA--AAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|7 : TTTTGCAGAATATGCGTTAT-GTTG-CCATGAATTGCAAACAAG-TCTTGAACAATCATTTGTCTATC--------------CTTCCAAACCAACTTATTGTACATACGC-ATGGGCATTTTAAAA-AGGCGTGCATCTTTTCGCTTAGTTTCG--ACTGATTT
gi|13 : TGAATTGCGAGCA-TGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATT
gi|5 : CTTCGTTTT---ATTGGTTTCTC----CTTTCTGTTCAGTCGTCTCTGGAACAATTATCAATTTTTGT------------TGTTTTTTTATCTTGCAAAGAAAGGCTTTGAA-CATTTTATTGGTTTGAATTTCGTT-TTATTA------ACATTTTTTGAGAAT-G-ATG-TACACTGGTACAACAAG-TAATCAA-TTATAATAGACAGCATAAGGT--ATGACAAGT--GAGGTTTACAACAGGCATTCTAAAACCATTATC-A-AAA-CATCTAAAAATATGTTGCGCTTTTAA-CGTT-CATTAGT-ATCAATAGAACTGCAATTTA---------------AGTAACATGATTAAAATCCATAAACAAACAAACTTTAGGGTAAACTGCGTGTGACTGCT
gi|16 : CGTCTTCTAATTACTTTCTTGTTACTTTTGATT---TTGCATCTG---CAATCACCAAaggttgtaactggatttta
gi|6 : gTTTTGATC---TTGCATCTG---CAATCACCTACATATCCAATAGTTTTTTTTATTGTTTC---TTGCAAAGACAGGCTCT-AAACT-----TTTGTT-----GTTGTTGTCATTCGCCATTACACCT-----GAAT-GCAT--TAAACT
gi|6 : AAACTCTTCATTTGTATGAATTTCGTT-TTATTC------ACATTTT--TAGAAT-T-ATG-TACACTGATACAATACA-AAATAGATT-ATAATAGACAGTATAACG--TATGATGAG--TGATGTTTACAACAGGCATTATACAAACATTATTAT-AAA-CTTCTAAAAATATGTTGCTTTTTTAATTT-T-CA-TCATAATAAATAGAAATG-A----A---------------cttcatttgtatgaatttcgttttattcacatttttagaattatgtacactgatacaatacaaaatagattataatagacagtataacgtatgatgagtgatgtttacaacaggcattatacaaacattattataaacttctaaaaatatgttgcttttttaattttcatcataataaatagaaatgaacagta
gi|14 : ttttgatcttgcatctgcaatcacctacatatccaatagttttttttattgtttcttgcaaagacaggctctaaacttttgttgttgttgtcattcgccattacacctgaatgcattTACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-TAAAA-CATCT-AAAATATGTTGCTcagta
gi|3 : gg-A----A---------------TATGACAGG-----AATGCACAAACAAGCAAAATGTATG------------TGATTGTTCA-GTGATTGT-AATATGTTTTCATTTTTGTGTTGACACATGTTTAGTGGCAGAAGGTTACTAGTT-TTT--AATAATAGAGTCGATATTCTAACAGCTGACGATAGAACACCCAAATGGAGTA--------------------CGTAAA-A-ACAATC---------GCTTTGCAAATGTCTCCCACTT-TATGTTTCCTGAAGAGCTGCAGATCTGGAGTTACCTAGTCTGATGGTGGATATTGTTTTCATCTTAGTTGTTTTTCACAGCCAATGTCAAA-TTTATATGCCGTGCAAA--------------------TTCATCGTATGTTTTCCACAGTGTCGG-CATTCTGA------TGTATCT--AAGAAAAATCATTGCAATTACCATTAAA-----CAATTATCTTTGTG-ATAATCAAG--TGCACTCGTATA-----ATATAATA---------TACA------TAGAAA-ATTATTTTAATGTGATTCTTCTAGATCTTTACTG-TATTGATATTTCTTTGAATTGTAATTTGTCAACTAATTCACTACCTCACCCTTACCAAATCAAACAATG---AGCGTATGAAAATC-AAAGCATA--AA--------GAANNNNNNNN---NNNNNN----NNNN--------NNNNN-N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAATTCACAATGTAGGT---CAGCGAT-GAATTCCAAGG--TTT--CA-AACTTGATACCAATGG---GAAAATTCTTAC----AATGCAAAGGCTATAT---AC-GA--AAGATACGGATTGGCTTGTATTT
gi|4 : tTGCTTTACGTTTTGTGTTGACACATGTTTAGTGGCAGAA--CA--TAAATATTTTCAATAAAGGAGTCCATATCTTAACAGCTGACGATATAACACCCAAATGGAGAAGAGAAAAACAACAATCGCTCCGTAAATGTACAG-TTTGTTAGTAGCTTTGTGA-TGTCTCCCACTC-TATGCTTCCTGTAGAGCTATAGATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTTTCGTAGCCAATGTGGAATTT-AGAAGCCGTGCGAATTCGAATTCATCTTATCTTTT--------------CCACAGTAT-GGACATTGTGAAG------TATCTAGAAAAAAAAGCATAGCAATTACCATTAAACAACTAAA--AT---TGTG-ATAAT----CATGTGC-TCTCT-TAAAAAATTGATGCCCCCGGATTACAACAGAGTAGAA--ATTATTTTAATG
gi|15 : TCTCCCACTT-TATGCTTCCTGAGAGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------
gi|11 : TTACCGAATCAAACATTG---AGCGTATGGAAATAAAATGCGTA--AA--------GAACAAGTAT-------GTATT--TGTG--------AGCCATT-GATG
gi|4 : ACATTGTGAAGTATCTAGAAA-AAAAAGCATAGCAATTACCATTAAACAACTAAAATTGTGATAATCATGTGCTCTCTTAAAAAA-TTGATGCCCCCGGATTACAACAGAGTAGAAATTATTTTAATG
gi|9 : tgctttacgttttgtgttgacacatgtttagtggcagaacataaatattttcaataaaggagtccatatcttaacagctgacgatataacacccaaatggagaagagaaaaacaacaatcgctccgtaaatgtacagtttgttagtagctttgtgatgtctcccactctatgcttcctgtagagctatagatctggattacctgatggtggatatggttttcgtagccaatgtggaatttagaagccgtgcgaattcgaattcatcttatcttttccacagtatgg----TGTA--------AAACA-T-----CCCCGC-ATTTCAACCATGTGAAACTCATTTTAGTGAATAATTTTCAAAGAAGGT---CA-------------AG-G--TCA--CAGAGCTAAA-AATAATCT---G-GTAT
gi|12 : ATGCC-CAAGATTGCAACAAAGTGGAAATCATTTTAGCGAGCAATTTTCAAAGTAGGcaa
gi|8 : atatTTTAGTGAATACTTTTTAA--AAGGTAGTCAGAGGTCAAATTTCAA-GGGTCAACCA-AAT--GT-ACTAATGAAAAG-GTATTCTCACAAGAAATG----TGCTAGTT---TTGGACCAAAATAgtgaagggccag
gi|10 : aGTGAATAATTTTCAAAAAAGTT---CAGAGGC-CAATTTCAAGG--TCA--CA-AGCTGCATACAGAAAG---G-TCA-TCTCACAAGAAATGCACATACTAAt
gi|17 : GTAAATAATTTTTAAAGTAGGT---CATAGGT-CAATTTCAAGG--TCA--AA-At
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TAATTTTCAAAGTAGGTCAGAAGTCAATGTTACAGTC
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 2 2 1 22 2222 333 22 222 111 111 444444444444 1111 1 11 1 1 222 222 333 111 1 111111 55555555555555555555 22222 1 1 1 11 1 1 2 2222 1 22222 55555555555555 11 33333333333333333333333333333333333 1 555555 11 22222 11 11111 222 111 33 444444444 1 2222 1 2222 1 2222222222 1111111 1 1 1
lowQualScore : 4 0 0 5 77 1 0 9999 7 6 3 2 3 777 88 0 11 1 1 1 222 22 9 444 444 1 333333333333 8888 9 0 3 6 22 8 8 33 0 0 1 2 2 444 3 4 333 2 111 222 8 0 0 111111 66 2 3 0 8 88888888888888888888 55555 1 3 3 3 4 2 5 0 0 44 11 1 3 2 2 5 7 77 3 0 0 1111 66 0 0 0 8 8 1 8 00000 44444444444444 33 3 2 3 88 11111111111111111111111111111111111 0 444444 33 55555 33 77777 777 333 2 22 66 000000000 0 1111 0 1 1 9999 1 0 11 1 1 1 0 0 4 44 5 2 1 7777777777 4 8 4 7777 1 0 5 66 1 1 5 1 5 99 2 1 55 1 8888888 2 2 2 3 22 0 3 1 0 5
lowQualScore : . . . . .. . . .... . . . . . ... .. . .. . . . ... .. . ... ... . ............ .... . . . . .. . . .. . . . . . ... . . ... . ... ... . . . ...... .. . . . . .................... ..... . . . . . . . . . .. .. . . . . . . .. . . . .... .. . . . . . . . ..... .............. .. . . . .. ................................... . ...... .. ..... .. ..... ... ... . .. .. ......... . .... . . . .... . . .. . . . . . . .. . . . .......... . . . .... . . . .. . . . . . .. . . .. . ....... . . . . .. . . . . .
lowQualScore : 0 0 0 5 55 0 7 3333 3 7 2 5 2 333 00 7 33 0 0 0 000 88 2 000 000 0 555555555555 5555 0 8 2 0 44 0 0 88 0 0 0 5 5 000 2 0 888 8 222 222 0 6 8 222222 55 0 2 8 0 00000000000000000000 00000 0 2 0 2 2 5 0 0 0 55 00 0 0 5 5 0 8 55 0 0 0 2222 55 0 2 2 2 0 0 0 00000 66666666666666 88 0 0 2 55 00000000000000000000000000000000000 0 555555 88 00000 88 22222 555 555 5 00 55 000000000 0 2222 0 0 0 3333 0 7 77 0 0 0 7 2 0 22 5 5 0 8888888888 6 0 4 4444 0 2 0 11 0 0 7 0 7 22 2 0 66 0 8888888 8 8 2 8 00 0 3 0 7 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGG-TTACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCAGTG-ATTG-TAATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTA-GATAAAAA----CAATCGCTCCGTAAATGTACAG-TTTGTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGT-GGACATTCTGAAGTAC-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGC--ATGAT-AGGCATGTACATGTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTA-TGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
Reference ( family-2406 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTNTGCAGAATATGCGTTATTGTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACATACGCTATGGGCATTTTAAAAANGNCNTGCANCTTCTCGCTTCGTCTT---ATTGATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACATATNCAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATNTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTATAATAGACAGCATAAGG-TTACGACGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCGTAATAAATAGAAATG-A----A---------------AATGACAGG-----AATNCATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCAGTG-ATTG-TAATATG--TTTTAANTTTTGTGTTGACACATGTTTAGTGGCAGAAGGCTTAATTGTTTTCAATAATAGAGTCGATATTCTAACAGCTGACGATATAACACCCAAATGGAGTA-GA-AAAAA----CAATCGCTCCGTAAATGTACAG-TTTGTCAGCAGCTTTGCGATGTCTCCCACTT-TATGCTTCCTGAGGGGCNACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTTTCGCAGCCAATGTGGAATTTAGAAGCCGTGCGAA--------------------T--------------CCACAGTGT-GGACATTCTGAAG----TGTATCT--AAAAAAAATCATAGCAATTACCATTAAA-----AAA--ATC-T--GTG---ATAAT-AGGCATGTAC-CGTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTANANCTTTACTGTTATTGANATTCCTTNGAATTNTAATTTGTCNACCAATTCACNACCTCACCCTTACCGAATCAAACATTGAGCGTATGGAAATNAAAAGCATAAATGAACAANTANAGTGGTA-TTGTGAAACA-TGATGCCCCGNGATTNCAACAAAGTGGAAATCATTTTAGTGAGTAATTTTCAAA--GNAGGTCAGAGGTNAA-TTTCAAGG-TCA--CAAGCTNGATACNAATGG---G-GNATTCTCACAAGAAATGCANATGCTANNT-AC-GAAAAATACGGATTGGCTTGTATTTGACGTCATATGT
gi|1 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTATGAAATTGAATTTCCTGCTGTACATACATGTCTATTAATCATCATTATGAGCATTCATCA-CACTGAGATATGCGATAAAAAGATTATGCAGAATATGCAT-AT-GTTGTCCATGAAT-GCGAGCAT-TCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAA-CGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTTTCGCT-CTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAAACTTTAAAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAAT-GATA-TAAACT-GTA-AACA-G-AAATAGA-TGTAATAGACAGCATTAGGTTTATGATGAGTCTAATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCT-AAAATATTGTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAGTG-A----A---------------AATGACAGG-----AATACATAAACAAACAAAATTTATGGTAAACTGCACGTGATTGTTCA-TGTATTGTTAGAATG--TTTTAAATTGTGTGTTGACACAGTTTTAGTGGCAGAAGGCTTAATCATTT--AATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTA-GATAAAAA----CAATCGCTCCGTAAATG-ACAGTTTTGTCAGCAGCTTTGTGATGTCTCCCACTTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTGTCACAGCCAATGTGGAA-TTAGAAGCCGTG-AAA--------------------T--------------CCACAGTGTGGGACATTCTGAAGTACATATATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--ATGTGCATGAT-AGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AACATTATTTTAATGTGATTCTTCTACAGCTTTACTG-TA-TGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACAGTGGTA--TGTGAACCA-TGATGCCTCGCGATTACAATAGAGTGGAATTCATTTTAGTGAGTACTCTTCAAT--GAAGGTCAGAGATGAA-TTTCAA-G-TCA--CAAACTAGA-ACTAATGG---G-ATATTCTTACAAGAAATGCACATGCTAAAT-ACGGAAAAGTACGGATTGGTTTGTATTTGAC-TCATATGT
gi|10 : caatgcttccaatttaggacatgttatgacttaagctcttgagtacacaatGTGAATAATTTTCAAA--AAAGTTCAGAGGCCAA-TTTCAAGG-TCA--CAAGCTGCATACAGAAAG---G-TCA-TCTCACAAGAAATGCACATACTA
gi|11 : TTACCGAATCAAACATTGAGCGTATGGAAATAAAATGCGTAAA-GAACAAGTAT----GTATTTGTGAGCCATTGATGat
gi|12 : ATGCCC-AAGATTGCAACAAAGTGGAAATCATTTTAGCGAGCAATTTTCAAA--GTAGG
gi|13 : atatTGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTgtgaagggccag
gi|14 : TACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-TAAAA-CATCT-AAAATATGTTGCT
gi|15 : ggTCTCCCACTT-TATGCTTCCTGAGAGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------
gi|16 : CGTCTTCTAATTACTTTCTTGTTACTTTTGATT---TTGCATCTG---CAATCACCAA
gi|17 : gGTAAATAATTTTTAAA--GTAGGTCATAGGTCAA-TTTCAAGG-TCA--AAAG
gi|18 : gTAATTTTCAAA--GTAGGTCAGAAGTCAA-TGTTACAG-TC
gi|2 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTATGCAGAATATGCAT-ATTGTTGTC-ATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAGACTTT-AAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAATCGATAATAAACTGGTACAACA-GGAAATAGATTGTAATAGACAGCATTAGG-T-ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-T-AAAACATCTAAAA-TATGTTGCTCTTTTAA-CG-TTCAT-CATAATAAATGGAAATG-A----ACTGTAACTTAATTAAAATGACAGG-----AATACATAAACAAGCAACATTTATGGTAAACTGCATGTGATTGTTCAGTG-ATTG-TAATATG--TTTTAAATTGTGTGTTGACACATTTTTAGTGGCAGAAGG-TTAATAGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTA-GATAAAAA----CAATCGCTCCGTAAATGTACAG-TTTGTCAGCAGCTTTGTGATGTCTCCCATTG-TATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTGTCACAGCCAATGTGGAATTTAGAAGCCGTGTAAA--------------------T--------------CCACAGTGT-GGACATTCTGAAGTACCTGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATCAT--GTGC--ATGAT-AGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AC-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTA-TGAGATTCCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCCAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACA-NNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTACTTCTCAAT--GTAGGTCAGAGATGAA-TTTNNNNN-NNN--NNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|3 : -A----A---------------TATGACAGG-----AATGCACAAACAAGCAAAAT-----GTA-------TGTGATTGTTCAGTG-ATTG-TAATATG--TTTTCATTTTTGTGTTGACACATGTTTAGTGGCAGAAGG-TTACTAGTTTTTAATAATAGAGTCGATATTCTAACAGCTGACGATAGAACACCCAAATGGAGTACGT-AAAAA----CAATCGCTTTGCAAATGT---------------------------CTCCCACTT-TATGTTTCCTGAAGAGCTGCAGATCTGGAGTTACCTAGTCTGATGGTGGATATTGTTTTCATCTTAGTTGTTTTTCACAGCCAATGTCAAATTTATATGCCGTGCAAA--------------------TTCATCGTATGTTTTCCACAGTGT-CGGCATTCTGA------TGTATCT--AAGAAAAATCATTGCAATTACCATTAAA-----CAATTATC-TTTGTG---ATAATCAAG--TGCACTCGTATA-----ATATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTAGATCTTTACTGT-ATTGATATTTCTTTGAATTGTAATTTGTCAACTAATTCACTACCTCACCCTTACCAAATCAAACAATGAGCGTATGAAAATC-AAAGCATAAA-GAA-NNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAATTCACAAT--GTAGGTCAGCGATGAA-TTCCAAGG-TTT--CAAACTTGATACCAATGG---GAAAATTCTTAC----AATGCAAAGGCTATAT-AC-GAAAGATACGGATTGGCTTGTATTT
gi|4 : tTG--CTTTACGTTTTGTGTTGACACATGTTTAGTGGCAGAA--CATAAATATTTTCAATAAAGGAGTCCATATCTTAACAGCTGACGATATAACACCCAAATGGAGAA-GA-GAAAAACAACAATCGCTCCGTAAATGTACAG-TTTGTTAGTAGCTTTGTGATGTCTCCCACTC-TATGCTTCCTGTAGAGCTATAGATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTTTCGTAGCCAATGTGGAATTTAGAAGCCGTGCGAATTCGAATTCATCTTATCTTTT--------------CCACAGTAT-GGACATTGTGAA------GTATCTAGAAAAAAAAGCATAGCAATTACCATTAAACAACTAAA--AT--T--GTG---ATAAT----CATGTGC-TCTCT-TAAAAAATTGATGCCCCCGGATTACAACAGAGTAGAA-ATTATTTTAATG
gi|5 : CTTCGTTTT---ATTGGTTTCTC----CTTTCTGTTCAGTCGTCTCTGGAACAATTATCAATTTTTGT------------TGTTTTTTTATCTTGCAAAGAAAGGCTTTGAA-CATTTTATTGGTTTGAATTTCGTT-TTATTAA-CATTTTTTGAGAAT-GATG-TACACTGGTACAACAAG-TAATCAATTATAATAGACAGCATAAGG-T-ATGACAAGT--GAGGTTTACAACAGGCATTCTAAAACCATTATC-A-AAA-CATCTAAAAATATGTTGCGCTTTTAA-CGTT-CATTAGT-ATCAATAGAACTGCAATTTA---------------AGTAACATGATTAAAATCCATAAACAAACAAACTTTAGGGTAAACTGCGTGTGACTGCT-A--G-GTTG-TAAC-TGGATTTTA
gi|6 : TTTTGATC---TTGCATCTG---CAATCACCTACATATCCAATAGTTTTTTTTATTGTTTC---TTGCAAAGACAGGCTCT-AAACT-----TTTGT-----TGTTGTTGTCATTCGCCATT
gi|6 : AAACTCTTCATTTGTATGAATTTCGTT-TTATTCA-CATTTT--TAGAAT-TATG-TACACTGATACAATACA-AAATAGATTATAATAGACAGTATAACG--TATGATGAGT--GATGTTTACAACAGGCATTATACAAACATTATTAT-AAA-CTTCTAAAAATATGTTGCTTTTTTAATTT-T-CA-TCATAATAAATAGAAATG-A----A---------------acacctgaatgcattaaactcttcatttgtatgaatttcgttttattcacatttttagaattatgtacactgatacaatacaaaatagattataatagacagtataacgtatgatgagtgatgtttacaacaggcattatacaaacattattataaacttctaaaaatatgttgcttttttaattttcatcataataaatagaaatgaacagta
gi|7 : ttttgatcttgcatctgcaatcacctacatatccaatagttttttttattgtttcttgcaaagacaggctctaaacttttgttgttgttgtcattcgccattacacctgaatgcattTTTTGCAGAATATGCGTTAT-GTTG-CCATGAATTGCAAACAAGTCTTGAACAATCATTTGTCTATC--------------CTTCCAAACCAACTTATTGTACATACGC-ATGGGCATTTTAAAAA-GGCGTGCATCTTTTCGCTTAGTTTCG--ACTGATTTcagta
gi|8 : TTTAGTGAATACTTTTTAAAAGGTAG-TCAGAGGTCAAATTTCAAGGGTCAACCAAA--TG-TACTAATGAAAAG-GTATTCTCACAAGAAATG----TGCTAGTT-
gi|9 : aTGTAAAACA-T----CCCCGC-ATTTCAACCATGTGAAACTCATTTTAGTGAATAATTTTCAAA--GAAGGTCA-AGGTCAttggaccaaaatat
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 1 1 11 1 1 222 11 222 111 111 444444444444 1111 1 11 1 1 222 222 333 111 1 111111 55555555555555555555 22222 11 1 11 1 111 1 22222 55555555555555 11 33333333333333333333333333333333333 1 4444444 11 22222 11 11111 1 444444444 1 2222 1 1 222222222 1111111 1 1 1
lowQualScore : 1 5 5 5 88 0 3 3 7 6 3 2 3 333 7 44 222 22 9 444 444 0 333333333333 8888 9 0 3 6 1 8 8 33 0 0 1 6 2 444 3 1 111 111 222 8 0 0 111111 66 3 0 8 88888888888888888888 55555 0 3 3 3 4 2 22 2 0 44 11 1 1 1 2 5 1 44 1 777 66 0 0 0 8 8 00000 44444444444444 33 1 3 6 11111111111111111111111111111111111 0 0000000 33 55555 33 77777 5 666 3 2 0 3 333 000000000 0 1111 0 7 0 1 3 5 2 666666666 8 4 88 1 0 1 66 5 1 5 99 2 1 55 1 6666666 2 2 2 2 1 3 3 5
lowQualScore : . . . . .. . . . . . . . . ... . .. ... .. . ... ... . ............ .... . . . . . . . .. . . . . . ... . . ... ... ... . . . ...... .. . . . .................... ..... . . . . . . .. . . .. .. . . . . . . .. . ... .. . . . . . ..... .............. .. . . . ................................... . ....... .. ..... .. ..... . ... . . . . ... ......... . .... . . . . . . . ......... . . .. . . . .. . . . .. . . .. . ....... . . . . . . . .
lowQualScore : 0 5 5 5 55 7 3 3 3 7 2 5 2 333 3 00 000 88 2 000 000 8 555555555555 5555 0 8 2 0 4 0 0 88 0 0 0 5 5 000 2 0 888 222 222 0 8 6 222222 55 2 8 0 00000000000000000000 00000 8 2 0 2 2 5 55 5 0 55 00 2 0 0 5 0 0 00 0 555 55 0 2 2 0 0 00000 66666666666666 88 0 2 5 00000000000000000000000000000000000 0 5555555 88 00000 88 22222 0 000 2 5 8 2 888 000000000 0 2222 0 3 2 0 2 5 5 888888888 0 4 88 0 2 0 11 7 0 7 22 2 0 66 0 2222222 8 8 2 2 0 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
Reference ( family-2406 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTACATGTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|1 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTATGAAATTGAATTTCCTGCTGTACATACATGTCTATTAATCATCATTATGAGCATTCATCA-CACTGAGATATGCGATAAAAAGATTATGCAGAATATGCAT-AT-GTTGTCCATGAAT-GCGAGCAT-TCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAA-CGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTTTCGCT-CTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAAACTTTAAAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAAT-GATA-TAAACTG-TA-AACA-G-AAATAGAT-GTAATAGACAGCATTAGGTTTATGATGAGTCTAATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAA-TATTGTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAGTG-A----A---------------AATGACAGG-----AATACATAAACAAACAAAATTTATGGTAAACTGCACGTGATTGTTCATGT-ATTGTTAGAATG--TTTTAAATTGTGTGTTGACACAGTTTTAGTGGCAGAAGGCTTAATCATTT--AATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATG-ACAGTTTTGTCAGCAGCTTTGTGATGTCTCCCACTTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTGTCACAGCCAATGTGGAATT-AGAAGCCGTG-AAA--------------------T--------------CCACAGTGTGGGACATTCTGAAGTA-CATATATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-TATGTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AACATTATTTTAATGTGATTCTTCTACAGCTTTACTG-TATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACAGTGGTA--TGTGAACCA-TGATGCCTCGCGATTACAATAGAGTGGAATTCATTTTAGTGAGTACTCTTCAAT--GAAGGTCAGAGATGAA-TTTCAA-G-TCA--CAAACTAGA-ACTAATGG---G-ATATTCTTACAAGAAATGCACATGCTAAAT-ACGGAAAAGTACGGATTGGTTTGTATTTGAC-TCATATGT
gi|10 : caatgcttccaatttaggacatgttatgacttaagctcttgagtacacaatGTGAATAATTTTCAAA--AAAGTTCAGAGGCCAA-TTTCAAGG-TCA--CAAGCTGCATACAGAAAG---G-TCA-TCTCACAAGAAATGCACATACTA
gi|11 : TTACCGAATCAAACATTGAGCGTATGGAAATAAAATGCGTAAA-GAACAAGTAT----GTATTTGTGAGCCATTGATGat
gi|12 : ATGCCCAA-GATTGCAACAAAGTGGAAATCATTTTAGCGAGCAATTTTCAAA--GTAGG
gi|13 : atatTGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTgtgaagggccag
gi|14 : T-ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-TAAAA-CATCT-AAAATATGTTGCT
gi|15 : ggTCTCCCACTT-TATGCTTCCTGAGAGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------
gi|16 : CGTCTTCTAATTACTTTCTTGTTACTTTTGATT---TTGCATCTG---CAATCACCAA
gi|17 : gGTAAATAATTTTTAAA--GTAGGTCATAGGTCAA-TTTCAAGG-TCA--AAA
gi|18 : gTAATTTTCAAA--GTAGGTCAGAAGTCAA-TGTTACAG-TCg
gi|2 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTATGCAGAATATGCAT-ATTGTTGTC-ATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAGACTTT-AAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAATCGATAATAAACTGGTACAACA-GGAAATAGATTGTAATAGACAGCATTAGGT--ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-T-AAAACATCTAAAA-TATGTTGCTCTTTTAA-CG-TTCAT-CATAATAAATGGAAATG-A----ACTGTAACTTAATTAAAATGACAGG-----AATACATAAACAAGCAACATTTATGGTAAACTGCATGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTGTGTGTTGACACATTTTTAGTGGCAGAAGG-TTAATAGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCATTG-TATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTGTCACAGCCAATGTGGAATTTAGAAGCCGTGTAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTACC-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATCAT--GTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AC-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTCCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCCAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACA-NNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTACTTCTCAAT--GTAGGTCAGAGATGAA-TTTNNNNN-NNN--NNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|3 : -A----A---------------TATGACAGG-----AATGCACAAACAAGCAAAAT-----GTA-------TGTGATTGTTCA-GTGATTGT-AATATG--TTTTCATTTTTGTGTTGACACATGTTTAGTGGCAGAAGG-TTACTAGTTTTTAATAATAGAGTCGATATTCTAACAGCTGACGATAGAACACCCAAATGGAGTACGTAAAAACA---ATCGCTTTGCAAATGT---------------------------CTCCCACTT-TATGTTTCCTGAAGAGCTGCAGATCTGGAGTTACCTAGTCTGATGGTGGATATTGTTTTCATCTTAGTTGTTTTTCACAGCCAATGTCAAATTTATATGCCGTGCAAA--------------------TTCATCGTATGTTTTCCACAGTGTCG-GCATTCTGA-------TGTATCT--AAGAAAAATCATTGCAATTACCATTAAA-----CAATTATC-T--TTG--TGATAATCAAGTGCACTCGTATAATA---TAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTAGATCTTTACTGTATTGATATTTCTTTGAATTGTAATTTGTCAACTAATTCACTACCTCACCCTTACCAAATCAAACAATGAGCGTATGAAAATC-AAAGCATAAA-GAA-NNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAATTCACAAT--GTAGGTCAGCGATGAA-TTCCAAGG-TTT--CAAACTTGATACCAATGG---GAAAATTCTTAC----AATGCAAAGGCTATAT-AC-GAAAGATACGGATTGGCTTGTATTT
gi|4 : tTG--CTTTACGTTTTGTGTTGACACATGTTTAGTGGCAGAA--CATAAATATTTTCAATAAAGGAGTCCATATCTTAACAGCTGACGATATAACACCCAAATGGAGAAGAGAAAAACAACAATCGCTCCGTAAATGTACAGTTT-GTTAGTAGCTTTGTGATGTCTCCCACTC-TATGCTTCCTGTAGAGCTATAGATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTTTCGTAGCCAATGTGGAATTTAGAAGCCGTGCGAATTCGAATTCATCTTATCTTTT--------------CCACAGTATGG-ACATTGTGAA-------GTATCTAGAAAAAAAAGCATAGCAATTACCATTAAACAACTAAA--AT--T--GTG-ATAAT---CATGTGC-TCTCT-TAAAAAATTGATGCCCCCGGATTACAACAGAGTAGAA-ATTATTTTAATG
gi|5 : CTTCGTTTT---ATTGGTTTCTC----CTTTCTGTTCAGTCGTCTCTGGAACAATTATCAATTTTTGT------------TGTTTTTTTATCTTGCAAAGAAAGGCTTTGAA-CATTTTATTGGTTTGAATTTCGTT-TTATTAA-CATTTTTTGAGAAT-GATG-TACACTGGTACAACAAG-TAATCAATTATAATAGACAGCATAAGGT--ATGACAAGT--GAGGTTTACAACAGGCATTCTAAAACCATTATC-A-AAA-CATCTAAAAATATGTTGCGCTTTTAA-CGTT-CATTAGT-ATCAATAGAACTGCAATTTA---------------AGTAACATGATTAAAATCCATAAACAAACAAACTTTAGGGTAAACTGCGTGTGACTGCT-A---GGTTGT-AAC-TGGATTTTA
gi|6 : TTTTGATC---TTGCATCTG---CAATCACCTACATATCCAATAGTTTTTTTTATTGTTTC---TTGCAAAGACAGGCTCT-AAACT-----TTTGT-----TGTTGTTGTCATTCGCCATT
gi|6 : AAACTCTTCATTTGTATGAATTTCGTT-TTATTCA-CATTTT--TAGAAT-TATG-TACACTGATACAATACA-AAATAGATTATAATAGACAGTATAACG-T-ATGATGAGT--GATGTTTACAACAGGCATTATACAAACATTATTAT-AAA-CTTCTAAAAATATGTTGCTTTTTTAATTT-T-CA-TCATAATAAATAGAAATG-A----A---------------acacctgaatgcattaaactcttcatttgtatgaatttcgttttattcacatttttagaattatgtacactgatacaatacaaaatagattataatagacagtataacgtatgatgagtgatgtttacaacaggcattatacaaacattattataaacttctaaaaatatgttgcttttttaattttcatcataataaatagaaatgaacagta
gi|7 : ttttgatcttgcatctgcaatcacctacatatccaatagttttttttattgtttcttgcaaagacaggctctaaacttttgttgttgttgtcattcgccattacacctgaatgcattTTTTGCAGAATATGCGTTAT-GTTG-CCATGAATTGCAAACAAGTCTTGAACAATCATTTGTCTATC--------------CTTCCAAACCAACTTATTGTACATACG-CATGGGCATTTTAAAAA-GGCGTGCATCTTTTCGCTTAGTTTCG--ACTGATTTcagta
gi|8 : TTTAGTGAATACTTTTTAAAAGGTAG-TCAGAGGTCAAATTTCAAGGGTCAACCAAA--TG-TACTAATGAAAAG-GTATTCTCACAAGAAATG----TGCTA
gi|9 : aTGTAAAACA-T----CCCCGC-ATTTCAACCATGTGAAACTCATTTTAGTGAATAATTTTCAAA--GAAGGTCA-AGGTCAgttttggaccaaaatat
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 1 1 11 1 1 222 11 222 111 111 444444444444 1111 1 11 1 1 222 222 333 111 1 111111 55555555555555555555 22222 11 1 11 1 111 1 22222 55555555555555 11 33333333333333333333333333333333333 1 4444444 11 22222 11 11111 1 444444444 1 2222 1 1 222222222 1111111 1 1 1
lowQualScore : 1 5 5 5 88 0 3 3 7 6 3 2 3 333 7 44 222 22 9 444 444 0 333333333333 8888 9 0 3 6 1 8 8 33 0 0 1 6 2 444 3 1 111 111 222 8 0 0 111111 66 3 0 8 88888888888888888888 55555 0 3 3 3 4 2 22 2 0 44 11 1 1 1 2 5 1 44 1 777 66 0 0 0 8 8 00000 44444444444444 33 1 3 6 11111111111111111111111111111111111 0 0000000 33 55555 33 77777 5 666 3 1 0 3 333 000000000 0 1111 0 7 0 1 3 5 2 666666666 8 4 88 1 0 1 66 5 1 5 99 2 1 55 1 6666666 2 2 2 2 1 3 3 5
lowQualScore : . . . . .. . . . . . . . . ... . .. ... .. . ... ... . ............ .... . . . . . . . .. . . . . . ... . . ... ... ... . . . ...... .. . . . .................... ..... . . . . . . .. . . .. .. . . . . . . .. . ... .. . . . . . ..... .............. .. . . . ................................... . ....... .. ..... .. ..... . ... . . . . ... ......... . .... . . . . . . . ......... . . .. . . . .. . . . .. . . .. . ....... . . . . . . . .
lowQualScore : 0 5 5 5 55 7 3 3 3 7 2 5 2 333 3 00 000 88 2 000 000 8 555555555555 5555 0 8 2 0 4 0 0 88 0 0 0 5 5 000 2 0 888 222 222 0 8 6 222222 55 2 8 0 00000000000000000000 00000 8 2 0 2 2 5 55 5 0 55 00 2 0 0 5 0 0 00 0 555 55 0 2 2 0 0 00000 66666666666666 88 0 2 5 00000000000000000000000000000000000 0 5555555 88 00000 88 22222 0 000 2 0 8 2 888 000000000 0 2222 0 3 2 0 2 5 5 888888888 0 4 88 0 2 0 11 7 0 7 22 2 0 66 0 2222222 8 8 2 2 0 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
Reference ( family-2406 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|1 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTATGAAATTGAATTTCCTGCTGTACATACATGTCTATTAATCATCATTATGAGCATTCATCA-CACTGAGATATGCGATAAAAAGATTATGCAGAATATGCAT-AT-GTTGTCCATGAAT-GCGAGCAT-TCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAA-CGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTTTCGCT-CTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAAACTTTAAAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAAT-GATA-TAAACTG-TA-AACA-G-AAATAGAT-GTAATAGACAGCATTAGGTTTATGATGAGTCTAATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAA-TATTGTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAGTG-A----A---------------AATGACAGG-----AATACATAAACAAACAAAATTTATGGTAAACTGCACGTGATTGTTCATGT-ATTGTTAGAATG--TTTTAAATTGTGTGTTGACACAGTTTTAGTGGCAGAAGGCTTAATCATTT--AATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATG-ACAGTTTTGTCAGCAGCTTTGTGATGTCTCCCACTTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTGTCACAGCCAATGTGGAATT-AGAAGCCGTG-AAA--------------------T--------------CCACAGTGTGGGACATTCTGAAGTA-CATATATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-TATGTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AACATTATTTTAATGTGATTCTTCTACAGCTTTACTG-TATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACAGTGGTA--TGTGAACCA-TGATGCCTCGCGATTACAATAGAGTGGAATTCATTTTAGTGAGTACTCTTCAAT--GAAGGTCAGAGATGAA-TTTCAA-G-TCA--CAAACTAGA-ACTAATGG---G-ATATTCTTACAAGAAATGCACATGCTAAAT-ACGGAAAAGTACGGATTGGTTTGTATTTGAC-TCATATGT
gi|10 : caatgcttccaatttaggacatgttatgacttaagctcttgagtacacaatGTGAATAATTTTCAAA--AAAGTTCAGAGGCCAA-TTTCAAGG-TCA--CAAGCTGCATACAGAAAG---G-TCA-TCTCACAAGAAATGCACATACTA
gi|11 : TTACCGAATCAAACATTGAGCGTATGGAAATAAAATGCGTAAA-GAACAAGTAT----GTATTTGTGAGCCATTGATGat
gi|12 : ATGCCCAA-GATTGCAACAAAGTGGAAATCATTTTAGCGAGCAATTTTCAAA--GTAGG
gi|13 : atatTGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTgtgaagggccag
gi|14 : T-ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-TAAAA-CATCT-AAAATATGTTGCT
gi|15 : ggTCTCCCACTT-TATGCTTCCTGAGAGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------
gi|16 : CGTCTTCTAATTACTTTCTTGTTACTTTTGATT---TTGCATCTG---CAATCACCAA
gi|17 : gGTAAATAATTTTTAAA--GTAGGTCATAGGTCAA-TTTCAAGG-TCA--AAA
gi|18 : gTAATTTTCAAA--GTAGGTCAGAAGTCAA-TGTTACAG-TCg
gi|2 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTATGCAGAATATGCAT-ATTGTTGTC-ATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAGACTTT-AAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAATCGATAATAAACTGGTACAACA-GGAAATAGATTGTAATAGACAGCATTAGGT--ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATC-T-AAAACATCTAAAA-TATGTTGCTCTTTTAA-CG-TTCAT-CATAATAAATGGAAATG-A----ACTGTAACTTAATTAAAATGACAGG-----AATACATAAACAAGCAACATTTATGGTAAACTGCATGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTGTGTGTTGACACATTTTTAGTGGCAGAAGG-TTAATAGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCATTG-TATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTGTCACAGCCAATGTGGAATTTAGAAGCCGTGTAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTACC-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATCAT--GTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AC-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTCCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCCAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACA-NNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTACTTCTCAAT--GTAGGTCAGAGATGAA-TTTNNNNN-NNN--NNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|3 : -A----A---------------TATGACAGG-----AATGCACAAACAAGCAAAAT-----GTA-------TGTGATTGTTCA-GTGATTGT-AATATG--TTTTCATTTTTGTGTTGACACATGTTTAGTGGCAGAAGG-TTACTAGTTTTTAATAATAGAGTCGATATTCTAACAGCTGACGATAGAACACCCAAATGGAGTACGTAAAAACA---ATCGCTTTGCAAATGT---------------------------CTCCCACTT-TATGTTTCCTGAAGAGCTGCAGATCTGGAGTTACCTAGTCTGATGGTGGATATTGTTTTCATCTTAGTTGTTTTTCACAGCCAATGTCAAATTTATATGCCGTGCAAA--------------------TTCATCGTATGTTTTCCACAGTGTCG-GCATTCTGA-------TGTATCT--AAGAAAAATCATTGCAATTACCATTAAA-----CAATTATC-T--TTG--TGATAATCAAGTGCACTCGTATAATA---TAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTAGATCTTTACTGTATTGATATTTCTTTGAATTGTAATTTGTCAACTAATTCACTACCTCACCCTTACCAAATCAAACAATGAGCGTATGAAAATC-AAAGCATAAA-GAA-NNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAATTCACAAT--GTAGGTCAGCGATGAA-TTCCAAGG-TTT--CAAACTTGATACCAATGG---GAAAATTCTTAC----AATGCAAAGGCTATAT-AC-GAAAGATACGGATTGGCTTGTATTT
gi|4 : tTG--CTTTACGTTTTGTGTTGACACATGTTTAGTGGCAGAA--CATAAATATTTTCAATAAAGGAGTCCATATCTTAACAGCTGACGATATAACACCCAAATGGAGAAGAGAAAAACAACAATCGCTCCGTAAATGTACAGTTT-GTTAGTAGCTTTGTGATGTCTCCCACTC-TATGCTTCCTGTAGAGCTATAGATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTTTCGTAGCCAATGTGGAATTTAGAAGCCGTGCGAATTCGAATTCATCTTATCTTTT--------------CCACAGTATGG-ACATTGTGAA-------GTATCTAGAAAAAAAAGCATAGCAATTACCATTAAACAACTAAA--AT--T--GTG-ATAAT---CATGTGC-TCTCT-TAAAAAATTGATGCCCCCGGATTACAACAGAGTAGAA-ATTATTTTAATG
gi|5 : CTTCGTTTT---ATTGGTTTCTC----CTTTCTGTTCAGTCGTCTCTGGAACAATTATCAATTTTTGT------------TGTTTTTTTATCTTGCAAAGAAAGGCTTTGAA-CATTTTATTGGTTTGAATTTCGTT-TTATTAA-CATTTTTTGAGAAT-GATG-TACACTGGTACAACAAG-TAATCAATTATAATAGACAGCATAAGGT--ATGACAAGT--GAGGTTTACAACAGGCATTCTAAAACCATTATC-A-AAA-CATCTAAAAATATGTTGCGCTTTTAA-CGTT-CATTAGT-ATCAATAGAACTGCAATTTA---------------AGTAACATGATTAAAATCCATAAACAAACAAACTTTAGGGTAAACTGCGTGTGACTGCT-A---GGTTGT-AAC-TGGATTTTA
gi|6 : TTTTGATC---TTGCATCTG---CAATCACCTACATATCCAATAGTTTTTTTTATTGTTTC---TTGCAAAGACAGGCTCT-AAACT-----TTTGT-----TGTTGTTGTCATTCGCCATT
gi|6 : AAACTCTTCATTTGTATGAATTTCGTT-TTATTCA-CATTTT--TAGAAT-TATG-TACACTGATACAATACA-AAATAGATTATAATAGACAGTATAACG-T-ATGATGAGT--GATGTTTACAACAGGCATTATACAAACATTATTAT-AAA-CTTCTAAAAATATGTTGCTTTTTTAATTT-T-CA-TCATAATAAATAGAAATG-A----A---------------acacctgaatgcattaaactcttcatttgtatgaatttcgttttattcacatttttagaattatgtacactgatacaatacaaaatagattataatagacagtataacgtatgatgagtgatgtttacaacaggcattatacaaacattattataaacttctaaaaatatgttgcttttttaattttcatcataataaatagaaatgaacagta
gi|7 : ttttgatcttgcatctgcaatcacctacatatccaatagttttttttattgtttcttgcaaagacaggctctaaacttttgttgttgttgtcattcgccattacacctgaatgcattTTTTGCAGAATATGCGTTAT-GTTG-CCATGAATTGCAAACAAGTCTTGAACAATCATTTGTCTATC--------------CTTCCAAACCAACTTATTGTACATACG-CATGGGCATTTTAAAAA-GGCGTGCATCTTTTCGCTTAGTTTCG--ACTGATTTcagta
gi|8 : TTTAGTGAATACTTTTTAAAAGGTAG-TCAGAGGTCAAATTTCAAGGGTCAACCAAA--TG-TACTAATGAAAAG-GTATTCTCACAAGAAATG----TGCTA
gi|9 : aTGTAAAACA-T----CCCCGC-ATTTCAACCATGTGAAACTCATTTTAGTGAATAATTTTCAAA--GAAGGTCA-AGGTCAgttttggaccaaaatat
blockSeqs : T . . A . T T T C T G A TAC T AC CTA GT A CAG GAA AATAGTTTTTTT TATC G C T A G C TT C A A G C GG T T T C TA A A CGTT TT A C ACTGTAACTTAATTAA ATTAA T T A A C G G . TA GA A G T G C A TT G ACA TA . . G AGTCT TATTGTTTTCATCT GT G T T TTCGAATTCATCTTATCTTTT . AGTACC AG CAACT TT CAT C AGG A G A AAA CCCCCGGAT A GTAG . T A A T C NNNNNNNN T G NN G A AG A G G AC C G AT A AAAGGT N A C C N C . G
blockSeqs : . . . . T G A . . A G GC A . . AAA G . T T T . . . . . C G C AG T A T C AT . A CGTT T A . ATTTA . T G A G C G G . TA . T T G G . A TT T . TA . . . . T . T T C TTCATCGTATGTTTT . A . . . CT . AAT A T A AAT . . . . T T A . C ANNNNNN . N NN N N . . G . . N N NN N GAAA T N N N T . .
blockSeqs : T G . . . . . . . C . C A T . . . . . C A C CA T A T G T . A TTTT T . . A . . . . . . . G . C . G T G . . T TC T . T . . . . . . T T C T . . . . . T . . . C . . . . . . A . . . GTATT . N G N N . . A . . C T AT C GTC T A C A
blockSeqs : . . . . . T . . G A . . . A . . . . . . . C T C . . N . . . T T T NNN . . . .
blockSeqs : . . G . .
blockSeqs : . . G .
blockSeqs : .
blockSeqs : .
blockSeqCons : N** A** T************* AT
originalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC-GATGTTTACAACAGGCATTATACAAACATTATC-T-AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
finalCons : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAACA-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTN--ATGTTTACAACAGGCATTATACAAACATTATCA--AAA-CATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
Alignments
lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1 1 1 11 1 1 222 11 222 111 111 444444444444 1111 1 11 1 1 11111 222 111 222 1 111111 55555555555555555555 22222 11 1 11 1 111 1 22222 55555555555555 11 33333333333333333333333333333333333 1 4444444 11 22222 11 11111 1 444444444 1 2222 1 1 222222222 1111111 1 1 1
lowQualScore : 1 5 5 5 88 0 3 3 7 6 3 2 3 333 7 44 222 22 9 444 444 0 333333333333 8888 9 0 3 6 1 8 8 33 0 0 1 6 2 55555 3 1 444 222 000 0 0 111111 66 3 0 8 88888888888888888888 55555 0 3 3 3 4 2 22 2 0 44 11 1 1 1 2 5 1 44 1 777 66 0 0 0 8 8 00000 44444444444444 33 1 3 6 11111111111111111111111111111111111 0 0000000 33 55555 33 77777 5 666 3 1 0 3 333 000000000 0 1111 0 7 0 1 3 5 2 666666666 8 4 88 1 0 1 66 5 1 5 99 2 1 55 1 6666666 2 2 2 2 1 3 3 5
lowQualScore : . . . . .. . . . . . . . . ... . .. ... .. . ... ... . ............ .... . . . . . . . .. . . . . . ..... . . ... ... ... . . ...... .. . . . .................... ..... . . . . . . .. . . .. .. . . . . . . .. . ... .. . . . . . ..... .............. .. . . . ................................... . ....... .. ..... .. ..... . ... . . . . ... ......... . .... . . . . . . . ......... . . .. . . . .. . . . .. . . .. . ....... . . . . . . . .
lowQualScore : 0 5 5 5 55 7 3 3 3 7 2 5 2 333 3 00 000 88 2 000 000 8 555555555555 5555 0 8 2 0 4 0 0 88 0 0 0 5 5 00000 2 0 333 000 222 8 6 222222 55 2 8 0 00000000000000000000 00000 8 2 0 2 2 5 55 5 0 55 00 2 0 0 5 0 0 00 0 555 55 0 2 2 0 0 00000 66666666666666 88 0 2 5 00000000000000000000000000000000000 0 5555555 88 00000 88 22222 0 000 2 0 8 2 888 000000000 0 2222 0 3 2 0 2 5 5 888888888 0 4 88 0 2 0 11 7 0 7 22 2 0 66 0 2222222 8 8 2 2 0 3 3 0
consensus : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAAC-A-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATCTA-AAACATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
Reference ( family-2406 ) : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCTTCCTCAGCGCAAACTACGTGACGTCTTNTGAAATTGAATTCCCTGCTGTACATACACGTCTATTAATCATCATTATGAGCATTCATCAACGCTGAGATATGCGATAAAAAGATTATGCAGAATATGCGT-AT-GTTGTCCATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTN---TTGCAAAGACAGGCTTTGAAACTCTTCATTTGTTTGAATGTCGTT-TTATTCA-CATTTT--GAGAAT-GATG-TANACTGGTACAAC-A-G-AAATAGATTGTAATAGACAGCATNAGGTT-ACGATGAGTN--ATGTTTACAACAGGCATTATACAAACATTATC-A-AAACATCTAAAAATATGTTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAATG-A----A---------------AATGACAGG-----AATACATAAACAAGCAAAATTTATGGTAAACTGCGTGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTNTGTGTTGACACATNTTTAGTGGCAGAAGGCTTAATNGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGANATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCACTT-TATGCTTCCTGAGGGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTNTCACAGCCAATGTGGAATTTAGAAGCCGTGCAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTA-C-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-T--GTGCATGATAGGCATGTGCATNTATATAAAAAAATAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCNAACATTGAGCGTATGGAAATCAAAAGCATAAATGAACAAATACAGTGGTA-TTGTGAACCA-TGATGCCCCGCGATTNCAACAAAGTGGAANTCATTTTAGTGAGTAATTTTCAAA--GTAGGTCAGAGGTCAA-TTTCAAGG-TCA--CAAACTNGATACNAATGG---G-NNATTCTCACAAGAAATGCACATGCTANAT-AC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|1 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTATGAAATTGAATTTCCTGCTGTACATACATGTCTATTAATCATCATTATGAGCATTCATCA-CACTGAGATATGCGATAAAAAGATTATGCAGAATATGCAT-AT-GTTGTCCATGAAT-GCGAGCAT-TCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAA-CGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTTTCGCT-CTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAAACTTTAAAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAAT-GATA-TAAACTG-TA-AAC-A-G-AAATAGAT-GTAATAGACAGCATTAGGTTTATGATGAGTCTAATGTTTACAACAGGCATTATACAAACATTATC-T-AAACATCTAAAA-TATTGTGCTCTTTTAA-CG-T-CATTCATAATAAATGGAAGTG-A----A---------------AATGACAGG-----AATACATAAACAAACAAAATTTATGGTAAACTGCACGTGATTGTTCATGT-ATTGTTAGAATG--TTTTAAATTGTGTGTTGACACAGTTTTAGTGGCAGAAGGCTTAATCATTT--AATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATG-ACAGTTTTGTCAGCAGCTTTGTGATGTCTCCCACTTGTATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGAT-------------TA--TGGTTGTCACAGCCAATGTGGAATT-AGAAGCCGTG-AAA--------------------T--------------CCACAGTGTGGGACATTCTGAAGTA-CATATATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATC-TATGTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AACATTATTTTAATGTGATTCTTCTACAGCTTTACTG-TATGAGATTTCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCGAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACAGTGGTA--TGTGAACCA-TGATGCCTCGCGATTACAATAGAGTGGAATTCATTTTAGTGAGTACTCTTCAAT--GAAGGTCAGAGATGAA-TTTCAA-G-TCA--CAAACTAGA-ACTAATGG---G-ATATTCTTACAAGAAATGCACATGCTAAAT-ACGGAAAAGTACGGATTGGTTTGTATTTGAC-TCATATGT
gi|10 : caatgcttccaatttaggacatgttatgacttaagctcttgagtacacaatGTGAATAATTTTCAAA--AAAGTTCAGAGGCCAA-TTTCAAGG-TCA--CAAGCTGCATACAGAAAG---G-TCA-TCTCACAAGAAATGCACATACTA
gi|11 : TTACCGAATCAAACATTGAGCGTATGGAAATAAAATGCGTAAA-GAACAAGTAT----GTATTTGTGAGCCATTGATGat
gi|12 : ATGCCCAA-GATTGCAACAAAGTGGAAATCATTTTAGCGAGCAATTTTCAAA--GTAGG
gi|13 : atatTGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTgtgaagggccag
gi|14 : T-ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATCTA-AAACATCT-AAAATATGTTGCT
gi|15 : ggTCTCCCACTT-TATGCTTCCTGAGAGGCGACAGATCTGGA-TTACCT-----GATGGTGGAT-------------
gi|16 : CGTCTTCTAATTACTTTCTTGTTACTTTTGATT---TTGCATCTG---CAATCACCAA
gi|17 : gGTAAATAATTTTTAAA--GTAGGTCATAGGTCAA-TTTCAAGG-TCA--AAA
gi|18 : gTAATTTTCAAA--GTAGGTCAGAAGTCAA-TGTTACAG-TCg
gi|2 : ATCTTCCTCAGCGCAAACTACGTGACGTCTTTTGAAATTGAATTCCCTGCTGTACATACACGTCTATTA-TCATCATTATGAGCAT-CATCAACGCTGAGATATGCGATAAA--GATTATGCAGAATATGCAT-ATTGTTGTC-ATGAATTGCGAGCATGTCTTGAACAATCATTTGTCTGTCATGTCTGATATTACCTTCGAAACCAACTTATTGCACA---GTTATGGACATTTTAAAAACGCCCTGCAACTTCTCGCTTCGTCTT---ATTAATTTCTCGCTACTTTTGATT---TTGCATCTG---CAATCACCAACACATACAA-A--------TATTTTTTG---TTACAAAAACAGACTTT-AAACTCTTCATTTGTTTGAAAGTCGTT-TTATTCA-CATTTT--GAGAATCGATAATAAACTGGTACAAC-A-GGAAATAGATTGTAATAGACAGCATTAGGT--ACGATGAGTC--ATGTTTACAACAGGCATTATACAAACATTATCTA-AAACATCTAAAA-TATGTTGCTCTTTTAA-CG-TTCAT-CATAATAAATGGAAATG-A----ACTGTAACTTAATTAAAATGACAGG-----AATACATAAACAAGCAACATTTATGGTAAACTGCATGTGATTGTTCA-GTGATTGT-AATATG--TTTTAAATTGTGTGTTGACACATTTTTAGTGGCAGAAGG-TTAATAGTTTTTAATGATAGAGTCGATATTCTAGCAGCTGACGAGATAACACCCAAATGGAGTAGATAAAAACA---ATCGCTCCGTAAATGTACAGTTT-GTCAGCAGCTTTGTGATGTCTCCCATTG-TATGCTTCCTGAGGGGCGACATATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTGTCACAGCCAATGTGGAATTTAGAAGCCGTGTAAA--------------------T--------------CCACAGTGTGG-ACATTCTGAAGTACC-TGTATCT--AAAAAAAATCACAGCAATTACCATTAAA-----AAA--ATCAT--GTGCATGATAGGCATATATATGTATATAAAAAAATAATA---------TAC-ATAGA----AC-ATTATTTTAATGTGATTCTTCTACAGCTTTACTGTTATGAGATTCCTTGAAATTCTAATTTGTCTACCAATTCACGACTTCACCCTTACCCAATCTAACATTGAGCGTATGGAAATCAAAAGCATAAATAAACAAATACA-NNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTACTTCTCAAT--GTAGGTCAGAGATGAA-TTTNNNNN-NNN--NNNNNNNNNNNNNNNNNN---N-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAC-GAAAAGTACGGATTGGTTTGTATTTGACGTCATATGT
gi|3 : -A----A---------------TATGACAGG-----AATGCACAAACAAGCAAAAT-----GTA-------TGTGATTGTTCA-GTGATTGT-AATATG--TTTTCATTTTTGTGTTGACACATGTTTAGTGGCAGAAGG-TTACTAGTTTTTAATAATAGAGTCGATATTCTAACAGCTGACGATAGAACACCCAAATGGAGTACGTAAAAACA---ATCGCTTTGCAAATGT---------------------------CTCCCACTT-TATGTTTCCTGAAGAGCTGCAGATCTGGAGTTACCTAGTCTGATGGTGGATATTGTTTTCATCTTAGTTGTTTTTCACAGCCAATGTCAAATTTATATGCCGTGCAAA--------------------TTCATCGTATGTTTTCCACAGTGTCG-GCATTCTGA-------TGTATCT--AAGAAAAATCATTGCAATTACCATTAAA-----CAATTATC-T--TTG--TGATAATCAAGTGCACTCGTATAATA---TAATA---------TAC-ATAGA----AA-ATTATTTTAATGTGATTCTTCTAGATCTTTACTGTATTGATATTTCTTTGAATTGTAATTTGTCAACTAATTCACTACCTCACCCTTACCAAATCAAACAATGAGCGTATGAAAATC-AAAGCATAAA-GAA-NNNNNNNNNNNNN-NNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTAATTCACAAT--GTAGGTCAGCGATGAA-TTCCAAGG-TTT--CAAACTTGATACCAATGG---GAAAATTCTTAC----AATGCAAAGGCTATAT-AC-GAAAGATACGGATTGGCTTGTATTT
gi|4 : tTG--CTTTACGTTTTGTGTTGACACATGTTTAGTGGCAGAA--CATAAATATTTTCAATAAAGGAGTCCATATCTTAACAGCTGACGATATAACACCCAAATGGAGAAGAGAAAAACAACAATCGCTCCGTAAATGTACAGTTT-GTTAGTAGCTTTGTGATGTCTCCCACTC-TATGCTTCCTGTAGAGCTATAGATCTGGA-TTACCT-----GATGGTGGA--------------TA--TGGTTTTCGTAGCCAATGTGGAATTTAGAAGCCGTGCGAATTCGAATTCATCTTATCTTTT--------------CCACAGTATGG-ACATTGTGAA-------GTATCTAGAAAAAAAAGCATAGCAATTACCATTAAACAACTAAA--AT--T--GTG-ATAAT---CATGTGC-TCTCT-TAAAAAATTGATGCCCCCGGATTACAACAGAGTAGAA-ATTATTTTAATG
gi|5 : CTTCGTTTT---ATTGGTTTCTC----CTTTCTGTTCAGTCGTCTCTGGAACAATTATCAATTTTTGT------------TGTTTTTTTATCTTGCAAAGAAAGGCTTTGAA-CATTTTATTGGTTTGAATTTCGTT-TTATTAA-CATTTTTTGAGAAT-GATG-TACACTGGTACAACAA-G-TAATCAATTATAATAGACAGCATAAGG-T-ATGACAAGTG--AGGTTTACAACAGGCATTCTAAAACCATTATC-A-AAACATCTAAAAATATGTTGCGCTTTTAA-CGTT-CATTAGT-ATCAATAGAACTGCAATTTA---------------AGTAACATGATTAAAATCCATAAACAAACAAACTTTAGGGTAAACTGCGTGTGACTGCT-A---GGTTGT-AAC-TGGATTTTA
gi|6 : TTTTGATC---TTGCATCTG---CAATCACCTACATATCCAATAGTTTTTTTTATTGTTTC---TTGCAAAGACAGGCTCT-AAACT-----TTTGT-----TGTTGTTGTCATTCGCCATT
gi|6 : AAACTCTTCATTTGTATGAATTTCGTT-TTATTCA-CATTTT--TAGAAT-TATG-TACACTGATACAAT-ACA-AAATAGATTATAATAGACAGTATAACG-T-ATGATGAGTG--ATGTTTACAACAGGCATTATACAAACATTATT-ATAAACTTCTAAAAATATGTTGCTTTTTTAATTT-T-CA-TCATAATAAATAGAAATG-A----A---------------acacctgaatgcattaaactcttcatttgtatgaatttcgttttattcacatttttagaattatgtacactgatacaatacaaaatagattataatagacagtataacgtatgatgagtgatgtttacaacaggcattatacaaacattattataaacttctaaaaatatgttgcttttttaattttcatcataataaatagaaatgaacagta
gi|7 : ttttgatcttgcatctgcaatcacctacatatccaatagttttttttattgtttcttgcaaagacaggctctaaacttttgttgttgttgtcattcgccattacacctgaatgcattTTTTGCAGAATATGCGTTAT-GTTG-CCATGAATTGCAAACAAGTCTTGAACAATCATTTGTCTATC--------------CTTCCAAACCAACTTATTGTACATACG-CATGGGCATTTTAAAAA-GGCGTGCATCTTTTCGCTTAGTTTCG--ACTGATTTcagta
gi|8 : TTTAGTGAATACTTTTTAAAAGGTAG-TCAGAGGTCAAATTTCAAGGGTCAACCAAA--TG-TACTAATGAAAAG-GTATTCTCACAAGAAATG----TGCTA
gi|9 : aTGTAAAACA-T----CCCCGC-ATTTCAACCATGTGAAACTCATTTTAGTGAATAATTTTCAAA--GAAGGTCA-AGGTCAgttttggaccaaaatat