lowQualScore : 888888888888888 1111 22222222222222 11111 11111 1 111 111 22 222 11 1111 1 1 1 1 11111 111111
lowQualScore : 2 4 000000000000000 999 0000 5 5 5 88 66 66 5 5 66 0 0 66 0 0 4 99999999999999 4 4 5 55 5 8 5 22222 5 44444 1 88 44 1 000 77 77 000 99 5 5 0 4 111 4 33 2 0000 66 888 5 6 99 5 3 66 888 5 888 5 5 0 0 66 5 9 2 5 55555 888 888 888 5 66 5 5 5 5 888888 666 8
lowQualScore : . . ............... ... .... . . . .. .. .. . . .. . . .. . . . .............. . . . .. . . . ..... . ..... . .. .. . ... .. .. ... .. . . . . ... . .. . .... .. ... . . .. . . .. ... . ... . . . . .. . . . . ..... ... ... ... . .. . . . . ...... ... .
lowQualScore : 8 8 333333333333333 000 6666 0 0 0 99 99 99 0 0 99 2 1 11 1 8 4 77777777777777 4 3 0 11 0 4 0 99999 0 33333 4 77 22 7 000 99 99 000 33 0 0 1 4 111 4 88 0 6666 99 888 0 7 22 7 9 33 888 0 888 0 0 2 0 99 0 5 2 0 44444 888 888 888 0 99 0 0 0 0 666666 444 7
consensus : GGCCTACTTCGATTGGGAAACCCGNGTTAA---G-GTTAACTCGA--GGATGAATA----AAAC-GG-AGCG-AGTAACTC-TGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGCGGTAT----TT-TACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCG-AGTGTGAA----CTT-GTG-----TTTACCTAATTTTTAAGTTTTTACGATATCT--AGTAATAG--AA--AG---AGA-GT-TTTATAGAGG-CAGAAATTAAAATGGA-ATGG-CTAAT-GCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTTATT---TA-C---CT-T-CGATTT-AACTC--TC-GAGTAAGTTAANT-CGT---TCGATTC---AAA--AT---TCG--TGTAC-GCA-T-GCCCA-TGACGTCC--ATTTAAATGAACCCGAG---TTAACNCGGGTTTCCCAATCGAAGTAGGCC
Reference ( gi|2 ) : GGCCTACTTCGATTGGGAAACCCGAGTTAATCCGAGTTAACTCGA--GGATGAATA----AAAC-GG-AGCG-AGTAACTT-TGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGCGGTAA----TT-TATGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGACG-AGTGTGAA----TTT-GTG-----TTGACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAG--AA--AG---AG--GT-TTTATAGAGG-CAGAAATTAAAATGGA-AT-G-CTAAT-GCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGTCATTTATT---TA-C---CT-T-CAATTT-AACTC--TC-GAGTAAGATAAAT-CGT---TCGATTC---AAA--AT---TTG--TGTAC-GCA-T-GCCCA-TGACATGC--ATTTAAATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|3 : GGCCTACTTCGATTTG-AAACCAGAGT-----------AACTCGC--GGATGAATA----AAAC-GG-GGCG-AGTAACTC-TGAA--GCGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCAACCCACATTTTAT-CGGGTAAT--GACGGTAT----TT-TACGTCACAACTATGGC-GGGGAATGG-TGAA-AATCGGCG-AGTGTGAA----TTT-GTG-----TTTACCTAATTTTTAAGTTTTTACAATATCT--GGTAGTAG--AAAGAG---AG--GT-TTTATAGAGG-CAA----TA-----------G-CTAAT-GCA--TTTTTTC----TTACTTTCAC--ATCTCAT---AA-AAAGG-TGGG--GGTACCCGG-CTTCGCCATTTATT---TA-C---CT-T-CGATTT-AACTC--TC-GAGTAAGTGAACT-CGT---TCGATTC---AAA--AT---TCG--TGTAC-GCA-T-GCCCA-TGACTTTC--ATTTAAATGAA-CCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|3 : GGCCTACTTCGATTGGGAAACCCGTGTTAACTCG-GTTCATTTAA----ATGAAc
gi|1 : ggcctacttcgatttgaaaccagagtaactcgcggatgaataaaacggggcgagtaactctgaagcgtcacgaaaatgaccttttaaccttacccgaggaatcctaggtccaacccacattttatcgggtaatgacggtattttacgtcacaactatggcggggaatggtgaaaatcggcgagtgtgaatttgtgtttacctaatttttaagtttttacaatatctggtagtagaaagagaggttttatagaggcaatagctaatgcattttttcttactttcacatctcataaaaaggtgggggtacccggcttcgccatttatttaccttcgatttaactctcgagtaagtgaactcgttcgattcaaaattcgtgtacgcatgcccatgactGGCCTACTTCGATTGGTAAACCCGAG---------GTTA--TTGA--A----AATA----AAAC-GGTAACGGAACAACTTCTGAATAACGTCACGATCAACA-TGACCTCTTTTAACCTTACCCGAGGAATCCTAGGTTACCGACCCA-A-TTAATACGCGTAATCAGGC--TGATCTTTT-TACGTCACAACGAT-GC-GGGGAAAGGCTGAATAGTCGACGAAGTGTGAA----CTTAGTG-----TTTACC---TTTTTA-------ACTATATCTCGGGTAATAG--AA--AGAGTAG--GTATTTATAGGGA-CAGATATTAAAATGGA-ATGG-CTAAT-GCAATTTTTCTC----TCACTTTCACCAATTACATTAAAA-AACGGTTGGAGCGGTACCCGGCCGTCGCCATTTATT---TA-C---CTAT-C--TTTCAACTCATTC-GATTAAGTTAAAT-CGTCTCCCGATTCATTAAG--AT---ATAGCTGTACGGCAGT-GCCCA-TGACGCTCTAATTAAGATGAACCCGAG---TTAACc
gi|9 : GGCCTACTTCGATTGGGAAACCTGAGTTAACCCGAG------------GATGAATA----AAAT-GG-AGCG-GGTAACTC-TGAA--ACGTCACGA--AA-A-TTACCT--TT-AA----ACCCGAGGAATCCAAGGT--CTGACCCACACTTAAT-CGGGTAAT--GGCAGTAT----TT-TATGTCACAACGATGGT-GGGGAAAGA-TGAA-AATCGGCG-AGTGTGAA----CTC-GTA-----TTTACCTAATTTTTAAGTTTTTACGATATCT--
gi|10 : GGCCTACTTCGATTGGGAAACCCAAGTTAA----------CTCGG--GGGTGAATA----AA-C-GG-AACA-AGTAACTC-TGAA--ACGTCACGA--AA-A-TGACAT--ATTAACGTTACACGAGGAATCCTATAT--CCGATGCACATTTAAT-CGGGT-AT--------------TT-TACGTCACAACAAT
gi|5 : GGTCTACTTCGATTGGGAAACC--------------------CGA--GGATGAATA----AAAC-GG-AGCG-AGTAAC
gi|12 : ttGACCTACTTCGATTGGGAAAATCGTGTACATTTGGGTTCATTTGAATGGACGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataattaaaatggaatggctaaagcattttttccccctcactttcacatcacataaaatggtggaggtacacggcgtcgcaatttatttaccttcgatttaactctcgatcgagtaagttaacattagtcaacgcatgcccatgacgtccatttaaatgaa
gi|6 : ttaccttcgattcaactctcgagtaagttactcgttcgattcaaaataattcgagtacacatgcccatgaGCCTACTTCGATTGGGAAACCCGAGTTA----------ACTCGA--TGATGAATATATAAAAC-GG-AGCG-AGTAACTC-CGAA--ACGTCACGA--AA-A-TGACCT--TTTAACTTTACTCAAGGAATCCAAGCT--CCGACCCACATTTAAT-CGGGTAAT--GGCAGTAT----TT-TACGTCACAACGATGGC-GGGGAAAGG-GGAA-AATCGGTG-AGTGTGAA----CTT-GTG-----CTTACCTGCTTTTTAAGTTTTTACGATATCT--TGTAATAGAAAA--AG---AG--GT-TTTATAAAGG-CAGAAATTAAAATGGA-ATGG-CTAAT-GCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCGGG-CTTCTTCATTTATT---TA-C---CT-T-CGATTT-AACTG--TC-GAGTAAG-TGAAT--GC------------------AT---TCG--TGTAC-GCA-T-GTCCA-TGACGTCC--ATTTAAATGAACCCGA
gi|4 : CCTACTTCGATTGGTAAACC------------GGTTAAC-CGA--GGATGAATA----AAACAGG-AGCG-AGTAACTC-TGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--C-GAACCACATTTAAT-CGGGTAAT--GACGGGTG----TTGTACGTCAT--CGATGGC-GGGGAAAGG-TCAA-TATCGGCG-AGTGTGAA----CTT-GTG-----TTTACCT------------TTTACTATATCT--AGTAA-AG--AA--AG---AGAGGT-TTTTTAGGGGGCAGAAATTAAAATGGACAT-GGCTAATTGCA--TTTT-TC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CATCGCCATT--TT---TATC---CT-TCCGATTT-AACTC--TC-GAGTAAGTTAACT-CGT---TCGATTC---AAA--A----TAG--TGTAC-GCA-T-GCCCATTGACGTT----TTTAAAT-AATCCGAG---TTAACACGGG-TTCCCAATCGAAGTAGG
gi|4 : CCTACTTCGATTGGG-AACCCGTGTTAACTCGGATTA
gi|8 : cctacttcgattggtaaaccggttaaccgaggatgaataaaacaggagcgagtaactctgaaacgtcacgaaaatgaccttttaaccttacccgaggaatcctaggtcgaaccacatttaatcgggtaatgacgggtgttgtacgtcatcgatggcggggaaaggtcaatatcggcgagtgtgaacttgtgtttaccttttactatatctagtaaagaaagagaggttttttagggggcagaaattaaaatggacatggctaattgcatttttctcactttcacatcacataaaacggtggaggtacccggcatcgccatttttatccttccgatttaactctcgagtaagttaactcgttcgattcaaaatagtgtacgcatgcccattgacgtttttaaaCCT-CTTCGATTGGGAAA-CCGTGTTAA
gi|7 : ttgttacgatatctagtaatagaaaaagtgttttatagaggagcaaataaaatggaatggctaatgcattttttttctcactttcaaatcaataataacggccgagttcccaggggtcgccattttacaaaaatcgattcaaactctcggagtaaattaactcgttgattcaaaacattcgtgtacgcatcgccctgatgtcccattaaatgaacccgagtttAATA----AAAA-GG-AGCG-GGTAACTC-TGAA--ACGTCACGA--AA-AATGACCT--TTTAACTTTACTCGAAGAAACCTAGGT--TCGACCCACATTTAAT-CAGGTAAT--GGAGGTAT----TT-TACGTCA-AA----GGT---GAAAAGG-TGAA-CATCGGCG-ATCGTGAA----CTT-GTG-----TTTACCTAAGTTTTGAATTTTTACAGTACCT--AGTAATAG--AA--AG---AGAAAT-TGTATAGAGG-CAGATATTAAATTGGA-AT-GACTACT-GTA--TTTTTTC----TCACTTTCAC--ATTACAT---AA-AAC
gi|14 : -TGAA--ACGTCATGA--AA-A-TGACCT--TTTAACCT-ACCCGAGGCATCCTAG-----------------AAT-CGGATA---------T------TT-TACGTCACAACAATGGT-GGGGAAAGG-TGAA-AGTCGGTG-AGTGTGAA----CTT-
gi|13 : TTACCCGAG--ATC--AGGT--CCGACCCACATTGAAT---GGTAAT--GGCGGAAT----TT-TACGTCACAACGATGGCTGGGGAAAAG--GAA-AATTG-----TTGTGAAAAATTTT-GCGGGAAATTGAC
gi|8 : TTGTTACGATATCT--AGTAATAG--AA--AA---AGT-GT-TTTATAGAGG--AGCAAATAAAATGGA-ATGG-CTAAT-GCATTTTTTTTC----TCACTTTCAA--ATCA-AT---AATAACGG-CCGA--GTTCCCAGG-GGTCGCCAT---TT---TA-CAAAAA-T-CGATTCAAACTC--TCGGAGTAAATTAACT-CGT---T-GATTC---AAAACAT---TCG--TGTAC-GCA-TCGCCC--TGATGTCC--CATTAAATGAACCCGAGTTTTTAACAC-GGTTTCCCAATCGAAG-AGG
gi|16 : GTAATAG--AA--AG---AGAGGT-TTTTTAGGGG-CAGAAATTAAAATGGA-ATGG-CTAAT-
gi|15 : T-TTTATAGAGG-CAGAAATTAAAATGGA-AT-G-------GAA--TTTTGTC----CCACTTTCAC--ATCACCT---AA-An
gi|5 : AATTAAAATGGA-AT-GGCTAAA-GCA--TTTTTTCCCCCTCACTTTCAC--ATCACAT---AA-AATGG-TGGA--GGTACACGG-CGTCGCAATTTATT---TA-C---CT-T-CGATTT-AACTC--TC-GATCGAG-TAA----GT---T---------AAC--AT---TAG--TCAAC-GCA-T-GCCCA-TGACGTCC--ATTTAAATGAAtgg
gi|11 : ttggtctacttcgattgggaaacccgaggatgaataaaacggagcgagtaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatCTGG-TGCCACCATTT-TTGTGTA-C---AT-G-CGATAT-AACCC--TT------ATATAAATTCGT---TTCATTG---CAC--AT---TTG--TTTGC-GCA-T-GTCCG-TGACTTGT--ATTTAAATGAATTCGAG---TT--------TTTCAATATTGGAGTAGGCC
gi|12 : agT---TA-C---CT-T-CGATTC-AACTC--TC-GAGTAAGTTAC-T-CGT---TCGATTC---AAA--ATAATTCG--AGTAC-ACA-T-GCCCA-TGACGTCC--ATTCAAATGAACCCAAA---TGTACACGATTTTCCCAATCGAAGTAGGTCcta
gi|9 : CTCGGG---TTAACTCAGGTTTCCCAATCGAAGTAGGCC
gi|10 : CCCGAG---TTAACTTGGGTTTCCCAATCGAAGTAGGCCgatgaataaaatggagcgggtaactctgaaacgtcacgaaaattacctttaaacccgaggaatccaaggtctgacccacacttaatcgggtaatggcagtattttatgtcacaacgatggtggggaaagatgaaaatcggcgagtgtgaactcgtatttacctaatttttaagtttttacgatatct
gi|3 : CGAG---TTA-CTCTGGTTTCA-AATCGAAGTAGGCCggtgaataaacggaacaagtaactctgaaacgtcacgaaaatgacatattaacgttacacgaggaatcctatatccgatgcacatttaatcgggtattttacgtcacaacaat
gi|6 : CGAG---TTAACTCGGGTTTCCCAATCGAAGTAGGCcggatgaataaaacggggcgagtaactctgaagcgtcacgaaaatgaccttttaaccttacccgaggaatcctaggtccaacccacattttatcgggtaatgacggtattttacgtcacaactatggcggggaatggtgaaaatcggcgagtgtgaatttgtgtttacctaatttttaagtttttacaatatctggtagtagaaagagaggttttatagaggcaatagctaatgcattttttcttactttcacatctcataaaaaggtgggggtacccggcttcgccatttatttaccttcgatttaactctcgagtaagtgaactcgttcgattcaaaattcgtgtacgcatgcccatgactttcatttaaatgaaccgagttaacacgggtttcccaatcgaagtaggccc
gi|4 : G---TTAAC-CGG-TTTACCAATCGAAGTAGGatgatgaatatataaaacggagcgagtaactccgaaacgtcacgaaaatgaccttttaactttactcaaggaatccaagctccgacccacatttaatcgggtaatggcagtattttacgtcacaacgatggcggggaaaggggaaaatcggtgagtgtgaacttgtgcttacctgctttttaagtttttacgatatcttgtaatagaaaaagaggttttataaaggcagaaattaaaatggaatggctaatgcattttttctcactttcacatcacataaaacggtggaggtaccgggcttcttcatttatttaccttcgatttaactgtcgagtaagtgaatgcattcgtgtacgcatgtccatgacgtccatttaaatgaacccga
gi|1 : CGGGTTTACCAATCGAAGTAGGCCcgaggatgaataaaacaggagcgagtaactctgaaacgtcacgaaaatgaccttttaaccttacccgaggaatcctaggtcgaaccacatttaatcgggtaatgacgggtgttgtacgtcatcgatggcggggaaaggtcaatatcggcgagtgtgaacttgtgtttaccttttactatatctagtaaagaaagagaggttttttagggggcagaaattaaaatggacatggctaattgcatttttctcactttcacatcacataaaacggtggaggtacccggcatcgccatttttatccttccgatttaactctcgagtaagttaactcgttcgattcaaaatagtgtacgcatgcccattgacgtttttaaataatccgagttaacacgggttcccaatcgaagtagg
gi|5 : CGGGTTTCCCAATCGAAGTAGACCaggttattgaaaataaaacggtaacggaacaacttctgaataacgtcacgatcaacatgacctcttttaaccttacccgaggaatcctaggttaccgacccaattaatacgcgtaatcaggctgatctttttacgtcacaacgatgcggggaaaggctgaatagtcgacgaagtgtgaacttagtgtttacctttttaactatatctcgggtaatagaaagagtaggtatttatagggacagatattaaaatggaatggctaatgcaatttttctctcactttcaccaattacattaaaaaacggttggagcggtacccggccgtcgccatttatttacctatctttcaactcattcgattaagttaaatcgtctcccgattcattaagatatagctgtacggcagtgcccatgacgctctaattaagatgaacccgagttaac
Alignments
lowQualScore : 777777777777777777 222222 11 1111 1111111111111 111
lowQualScore : 2 333333333333333333 2 9999 4 4 4 5 66 66 4 4 66 55 0 4 55 8 4 4 4 4 4 5 666 3 0 888 555555 4 4 4 4 22 9999 66 777 4 5 77 5 777 4 777 4 4 4 5555 4 5 777 2 5555555555555 1 4 4 4 4 4 4 4 0 000 1 3 2
lowQualScore : . .................. . .... . . . . .. .. . . .. .. . . .. . . . . . . . ... . . ... ...... . . . . .. .... .. ... . . .. . ... . ... . . . .... . . ... . ............. . . . . . . . . . ... . . .
lowQualScore : 5 666666666666666666 0 4444 4 4 4 0 11 11 4 4 11 55 7 0 55 0 0 4 4 4 4 0 111 0 2 000 000000 4 4 0 0 22 4444 11 888 4 7 99 0 000 4 888 4 4 4 6666 4 3 888 9 0000000000000 9 4 4 4 4 4 4 4 2 000 7 3 5
consensus : GGCCTACTTCGATTGGGAAACCCGAGTTAA----GGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
Reference ( family-2382 ) : GGCCTACTTCGATTGGGAAACCCGNGTTAA----GGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--AGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAANTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACNCGGGTTTCCCAATCGAAGTAGGCC
gi|1 : GGCCTACTTCGATTGGTAAACCCG-----A----GGTTA--TTGAA----AATA----AAAC-GGTAACGGAACAACTTCTGAATAACGTCACGATCAACA-TGACCTCTTTTAACCTTACCCGAGGAATCCTAGGTTACCGACCCA-ATT-AATACGCGTAATCAGGCTGATCTTTTTACGTCACAACGATG-C-GGGGAAAGGCTGAATAGTCGACGAAGTGTGAACTTAGTGTTTACCT---TTTTAA-------CTATATCTCGGGTAATAGAAAGAGTAG-G-TATTTATA-GGGACAGATATTAAAATGGA-ATGGCTAA-TGCAATTTTTCTC----TCACTTTCACCAATTACATTAAAA-AACGGTTGGAGCGGTACCCGGCCGTCGCCATTT--ATTTA-C---CTAT-CT-TTC-AACTCAT--TC-GATTAAGTTAAATCGTCTCCCGATTCATTAAG--ATA--TAGCTGTACGGCAGT-GCCCA-TGACGCTCTAATTAAGATGAACCCGAG---TTAAC
gi|10 : GGCCTACTTCGATTGGGAAACCC------A----AGTTAACTCGGGGGTGAATA----AA-C-GG-AACA-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACAT--ATTAACGTTACACGAGGAATCCTATAT--CCGATGCACATTTAAT-CG------------GGTATTTT-ACGTCACAACAAT
gi|11 : CTGG-TGCCACCATTTTTGTGTA-C---AT-G-CGATAT-AACCC----T-----TATATAAATTCGT---TTCATTG---CAC--AT---TTG-TTTGC-GCA-T-GTCCG-TGACT-TGTATTTAA-ATGAATTCGAG---TT--------TTTCAATATTGGAGTAGGCC
gi|12 : agTTA-C---CT-T-CGATTC-AACTC----TC-GAGTAAGTTA-CTCGT---TCGATTC---AAA--ATAATTCG-AGTAC-ACA-T-GCCCA-TGACG-TCCATTCAA-ATGAACCCAAA---TGTACACGATTTTCCCAATCGAAGTAGGTCcta
gi|13 : TTACCCGAG--ATC--AGGT--CCGACCCACATTGAAT---GGTAAT--GGC-GGAATTTT-ACGTCACAACGATGGCTGGGGAAAAG--GAA-AATTG-----TTGTGAA
gi|14 : TGAA--ACGTCATGA--AA-A-TGACCT--TTTAACCT-ACCCGAGGCATCCTAG-----------------AAT-CGGATA------------TTTT-ACGTCACAACAATGGT-GGGGAAAGG-TGAA-AGTCGGTGA-GTGTGAACTT-aaattttgcgggaaattgac
gi|15 : -T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGG--A-----A--TTTTGTC----CCACTTTCAC--ATCACCT---AA-A
gi|16 : GTAATAGAAAGAG--A-GGT-TTTTTA-GGGGCAGAAATTAAAATGGA-ATGGCTAA-Ttgg
gi|2 : GGCCTACTTCGATTGGGAAACCCGAGTTAATCCGAGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-TTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTAATTT-ATGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGACGA-GTGTGAATTT-GTGTTGACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG----G-T-TTTATA-GAGGCAGAAATTAAAATGGA-AT-GCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGTCATTT--ATTTA-C---CT-T-CAATTT-AACTC----TC-GAGTAAGATAAATCGT---TCGATTC---AAA--AT---TTG-TGTAC-GCA-T-GCCCA-TGACA-TGCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCCn
gi|3 : GGCCTACTTCGATTTG-AAACCAGAGT-----------AACTCGCGGATGAATA----AAAC-GG-GGCG-AGTAACT-CTGAA--GCGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCAACCCACATTTTAT-CGGGTAAT--GAC-GGTATTTT-ACGTCACAACTATGGC-GGGGAATGG-TGAA-AATCGGCGA-GTGTGAATTT-GTGTTTACCTAATTTTTAAGTTTTTACAATATCT--GGTAGTAGAAAGAG--A-GGT-TTTATA-GAGGCA---------------ATAGCTAA-TGCA--TTTTTTC----TTACTTTCAC--ATCTCAT---AA-AAAGG-TGGG--GGTACCCGG-CTTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTGAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACT-TTCATTTAA-ATGAA-CCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|4 : CCTACTTCGATTGGTAAACC------------GGTTAAC-CGAGGATGAATA----AAACAGG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT---CGAACCACATTTAAT-CGGGTAAT--GACGGGTGTTGT-ACGTCAT--CGATGGC-GGGGAAAGG-TCAA-TATCGGCGA-GTGTGAACTT-GTGTTTACC------------TTTTACTATATCT--AGTAA-AGAAAGAG--AGG-T-TTTTTAGGGGGCAGAAATTAAAATGGACATGGCTAATTGCA---TTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CATCGCCATT----TTTATC---CT-TCCGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--A----TAG-TGTAC-GCA-T-GCCCATTGACG-TT--TTTAA-AT-AATCCGAG---TTAACACGGG-TTCCCAATCGAAGTAGGc
gi|5 : GGTCTACTTCGATTGGGAAACCCG--------------------AGGATGAATA----AAAC-GG-AGCG-AGTAAC
gi|5 : ttAATTAAAATGGA-ATGGCTAA-AGCA--TTTTTTCCCCCTCACTTTCAC--ATCACAT---AA-AATGG-TGGA--GGTACACGG-CGTCGCAATTT--ATTTA-C---CT-T-CGATTT-AACTCTCGATC-GAGTAAGTTAA--CAT---TAG--TC---A----------------AC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataattaaaatggaatggctaaagcattttttccccctcactttcacatcacataaaatggtggaggtacacggcgtcgcaatttatttaccttcgatttaactctcgatcgagtaagttaacattagtcaacgcatgcccatgacgtccatttaaatgaa
gi|6 : ttggtctacttcgattgggaaacccgaggatgaataaaacggagcgagtaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatGCCTACTTCGATTGGGAAACCCGAGTTAA----------CTCGATGATGAATATATAAAAC-GG-AGCG-AGTAACT-CCGAA--ACGTCACGA--AA-A-TGACCT--TTTAACTTTACTCAAGGAATCCAAGCT--CCGACCCACATTTAAT-CGGGTAAT--GGC-AGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-GGAA-AATCGGTGA-GTGTGAACTT-GTGCTTACCTGCTTTTTAAGTTTTTACGATATCT--TGTAATAGAAAAAG--AGG-T-TTTATA-AAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCGGG-CTTCTTCATTT--ATTTA-C---CT-T-CGATTT-AACTG----TC-GAGTAAGTGAATGC--------------------AT---TCG-TGTAC-GCA-T-GTCCA-TGACG-TCCATTTAA-ATGAACCCGA
gi|7 : AATA----AAAA-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-AATGACCT--TTTAACTTTACTCGAAGAAACCTAGGT--TCGACCCACATTTAAT-CAGGTAAT--GGA-GGTATTTT-ACGTCA-AA----GGT---GAAAAGG-TGAA-CATCGGCGA-TCGTGAACTT-GTGTTTACCTAAGTTTTGAATTTTTACAGTACCT--AGTAATAGAAAGAGA-A-A-T-TGTATA-GAGGCAGATATTAAATTGGA-ATGACTAC-TGTA--TTTTTTC----TCACTTTCAC--ATTACAT---AA-AAC
gi|8 : TTGTTACGATATCT--AGTAATAGAAAAAG--T-G-T-TTTATA-GAGG-AGCAAATAAAATGGA-ATGGCTAA-TGCATTTTTTTTC----TCACTTTCAA--ATCA-AT---AATAACGG-CCGA--GTTCCCAGG-GGTCGCCAT-----TTTA-CAAAAA-T-CGATTCAAACTC----TCGGAGTAAATTAACTCGT---T-GATTC---AAAACAT---TCG-TGTAC-GCA-TCGCCC--TGATG-TCCCATTAA-ATGAACCCGAGTTTTTAACAC-GGTTTCCCAATCGAAG-AGG
gi|9 : GGCCTACTTCGATTGGGAAACCTGAGTTAA----------CCCGAGGATGAATA----AAAT-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-A-TTACCT--TT-AA----ACCCGAGGAATCCAAGGT--CTGACCCACACTTAAT-CGGGTAAT--GGC-AGTATTTT-ATGTCACAACGATGGT-GGGGAAAGA-TGAA-AATCGGCGA-GTGTGAACTC-GTATTTACCTAATTTTTAAGTTTTTACGATATCT--
Alignments
lowQualScore : 77777777777777 222222 11 1111 111 111
lowQualScore : 2 1 88888888888888 2 9999 4 4 4 5 66 66 4 4 66 55 0 4 55 8 4 4 4 4 4 5 666 3 0 777 444444 4 4 4 4 22 9999 66 777 4 5 77 5 777 4 777 4 4 4 5555 4 88888 99999999 222 1 4 4 4 4 4 4 4 0 000 1 2
lowQualScore : . . .............. . .... . . . . .. .. . . .. .. . . .. . . . . . . . ... . . ... ...... . . . . .. .... .. ... . . .. . ... . ... . . . .... . ..... ........ ... . . . . . . . . . ... . .
lowQualScore : 5 4 99999999999999 0 4444 4 4 4 0 11 11 4 4 11 55 7 0 55 0 0 4 4 4 4 0 111 0 2 333 555555 4 4 0 0 22 4444 11 888 4 7 99 0 000 4 888 4 4 4 6666 4 77777 99999999 222 9 4 4 4 4 4 4 4 2 000 7 5
consensus : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
Reference ( family-2382 ) : GGCCTACTTCGATTGGGAAACCCGAGTTAA----GGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|1 : GGCCTACTTCGATTGGTAAACCCGAG---------GTTA--TTGAA----AATA----AAAC-GGTAACGGAACAACTTCTGAATAACGTCACGATCAACA-TGACCTCTTTTAACCTTACCCGAGGAATCCTAGGTTACCGACCCA-ATT-AATACGCGTAATCAGGCTGATCTTTTTACGTCACAACGATG-C-GGGGAAAGGCTGAATAGTCGACGAAGTGTGAACTTAGTGTTTACCT---TTTTAA-------CTATATCTCGGGTAATAGAAAGAGTAG-G-TATTTATA-GGGACAGATATTAAAATGGA-ATGGCTAA-TGCAATTTTTCTC----TCACTTTCACCAATTACATTAAAA-AACGGTTGGAGCGGTACCCGGCCGTCGCCATTT--ATTTA-C---CTAT-CT-TTC-AACTCAT--TC-GATTAAGTTAAATCGTCTCCCGATTCATTAAG--ATA--TAGCTGTACGGCAGT-GCCCA-TGACGCTCTAATTAAGATGAACCCGAG---TTAAC
gi|10 : GGCCTACTTCGATTGGGAAACCCAAGTTAA----------CTCGGGGGTGAATA----AA-C-GG-AACA-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACAT--ATTAACGTTACACGAGGAATCCTATAT--CCGATGCACATTTAAT-CG------------GGTATTTT-ACGTCACAACAAT
gi|11 : CTGG-TGCCACCATTTTTGTGTA-C---AT-G-CGATAT-AACCC----T-----TATATAAATTCGT---TTCATTG---CAC--AT---TTG-TTTGC-GCA-T-GTCCG-TGACT-TGTATTTAA-ATGAATTCGAG---TT--------TTTCAATATTGGAGTAGGCC
gi|12 : agTTA-C---CT-T-CGATTC-AACTC----TC-GAGTAAGTTA-CTCGT---TCGATTC---AAA--ATAATTCG-AGTAC-ACA-T-GCCCA-TGACG-TCCATTCAA-ATGAACCCAAA---TGTACACGATTTTCCCAATCGAAGTAGGTCcta
gi|13 : TTACCCGAG--ATC--AGGT--CCGACCCACATTGAAT---GGTAAT--GGC-GGAATTTT-ACGTCACAACGATGGCTGGGGAAAAG--GAA-AATTG-----TTGTGAA
gi|14 : TGAA--ACGTCATGA--AA-A-TGACCT--TTTAACCT-ACCCGAGGCATCCTAG-----------------AAT-CGGATA------------TTTT-ACGTCACAACAATGGT-GGGGAAAGG-TGAA-AGTCGGTGA-GTGTGAACTT-aaattttgcgggaaattgac
gi|15 : -T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGG--A-----A--TTTTGTC----CCACTTTCAC--ATCACCT---AA-A
gi|16 : GTAATAGAAAGAG--A-GGT-TTTTTA-GGGGCAGAAATTAAAATGGA-ATGGCTAA-Ttgg
gi|2 : GGCCTACTTCGATTGGGAAACCCGAGTTAATCCGAGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-TTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTAATTT-ATGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGACGA-GTGTGAATTT-GTGTTGACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG----G-T-TTTATA-GAGGCAGAAATTAAAATGGA-AT-GCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGTCATTT--ATTTA-C---CT-T-CAATTT-AACTC----TC-GAGTAAGATAAATCGT---TCGATTC---AAA--AT---TTG-TGTAC-GCA-T-GCCCA-TGACA-TGCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCCn
gi|3 : GGCCTACTTCGATTTG-AAACCAGAGT-----------AACTCGCGGATGAATA----AAAC-GG-GGCG-AGTAACT-CTGAA--GCGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCAACCCACATTTTAT-CGGGTAAT--GAC-GGTATTTT-ACGTCACAACTATGGC-GGGGAATGG-TGAA-AATCGGCGA-GTGTGAATTT-GTGTTTACCTAATTTTTAAGTTTTTACAATATCT--GGTAGTAGAAAGAG--A-GGT-TTTATA-GAGGCA---------------ATAGCTAA-TGCA--TTTTTTC----TTACTTTCAC--ATCTCAT---AA-AAAGG-TGGG--GGTACCCGG-CTTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTGAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACT-TTCATTTAA-ATGAA-CCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|4 : CCTACTTCGATTGGTAAACC------------GGTTAAC-CGAGGATGAATA----AAACAGG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT---CGAACCACATTTAAT-CGGGTAAT--GACGGGTGTTGT-ACGTCAT--CGATGGC-GGGGAAAGG-TCAA-TATCGGCGA-GTGTGAACTT-GTGTTTACC------------TTTTACTATATCT--AGTAA-AGAAAGAG--AGG-T-TTTTTAGGGGGCAGAAATTAAAATGGACATGGCTAATTGCA---TTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CATCGCCATT----TTTATC---CT-TCCGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--A----TAG-TGTAC-GCA-T-GCCCATTGACG-TT--TTTAA-AT-AATCCGAG---TTAACACGGG-TTCCCAATCGAAGTAGGc
gi|5 : GGTCTACTTCGATTGGGAAACCCGAG--------------------GATGAATA----AAAC-GG-AGCG-AGTAAC
gi|5 : ttAATTAAAATGGA-ATGGCTAA-AGCA--TTTTTTCCCCCTCACTTTCAC--ATCACAT---AA-AATGG-TGGA--GGTACACGG-CGTCGCAATTT--ATTTA-C---CT-T-CGATTT-AACTCTCGATC-GAGTAAGTTAAC----------------------AT---TAG-TCAAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataattaaaatggaatggctaaagcattttttccccctcactttcacatcacataaaatggtggaggtacacggcgtcgcaatttatttaccttcgatttaactctcgatcgagtaagttaacattagtcaacgcatgcccatgacgtccatttaaatgaa
gi|6 : ttggtctacttcgattgggaaacccgaggatgaataaaacggagcgagtaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatGCCTACTTCGATTGGGAAACCCGAGTTAA----------CTCGATGATGAATATATAAAAC-GG-AGCG-AGTAACT-CCGAA--ACGTCACGA--AA-A-TGACCT--TTTAACTTTACTCAAGGAATCCAAGCT--CCGACCCACATTTAAT-CGGGTAAT--GGC-AGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-GGAA-AATCGGTGA-GTGTGAACTT-GTGCTTACCTGCTTTTTAAGTTTTTACGATATCT--TGTAATAGAAAAAG--A-GGT-TTTATA-AAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCGGG-CTTCTTCATTT--ATTTA-C---CT-T-CGATTT-AACTG----TC-GAGTAAGTGAATGC--------------------AT---TCG-TGTAC-GCA-T-GTCCA-TGACG-TCCATTTAA-ATGAACCCGA
gi|7 : AATA----AAAA-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-AATGACCT--TTTAACTTTACTCGAAGAAACCTAGGT--TCGACCCACATTTAAT-CAGGTAAT--GGA-GGTATTTT-ACGTCA-AA----GGT---GAAAAGG-TGAA-CATCGGCGA-TCGTGAACTT-GTGTTTACCTAAGTTTTGAATTTTTACAGTACCT--AGTAATAGAAAGAGA-A-A-T-TGTATA-GAGGCAGATATTAAATTGGA-ATGACTAC-TGTA--TTTTTTC----TCACTTTCAC--ATTACAT---AA-AAC
gi|8 : TTGTTACGATATCT--AGTAATAGAAAAAG--T-G-T-TTTATA-GAGG-AGCAAATAAAATGGA-ATGGCTAA-TGCATTTTTTTTC----TCACTTTCAA--ATCA-AT---AATAACGG-CCGA--GTTCCCAGG-GGTCGCCAT-----TTTA-CAAAAA-T-CGATTCAAACTC----TCGGAGTAAATTAACTCGT---T-GATTC---AAAACAT---TCG-TGTAC-GCA-TCGCCC--TGATG-TCCCATTAA-ATGAACCCGAGTTTTTAACAC-GGTTTCCCAATCGAAG-AGG
gi|9 : GGCCTACTTCGATTGGGAAACCTGAGTTAA----------CCCGAGGATGAATA----AAAT-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-A-TTACCT--TT-AA----ACCCGAGGAATCCAAGGT--CTGACCCACACTTAAT-CGGGTAAT--GGC-AGTATTTT-ATGTCACAACGATGGT-GGGGAAAGA-TGAA-AATCGGCGA-GTGTGAACTC-GTATTTACCTAATTTTTAAGTTTTTACGATATCT--
Alignments
lowQualScore : 55555555555555 222222 11 1111 111 111
lowQualScore : 2 1 66666666666666 2 9999 4 4 4 5 66 66 4 4 66 55 0 4 55 8 4 4 4 4 4 5 666 3 0 777 444444 4 4 4 4 22 9999 66 777 4 5 77 5 777 4 777 4 4 4 5555 4 88888 99999999 222 1 4 4 4 4 4 4 4 0 000 1 2
lowQualScore : . . .............. . .... . . . . .. .. . . .. .. . . .. . . . . . . . ... . . ... ...... . . . . .. .... .. ... . . .. . ... . ... . . . .... . ..... ........ ... . . . . . . . . . ... . .
lowQualScore : 5 4 66666666666666 0 4444 4 4 4 0 11 11 4 4 11 55 7 0 55 0 0 4 4 4 4 0 111 0 2 333 555555 4 4 0 0 22 4444 11 888 4 7 99 0 000 4 888 4 4 4 6666 4 77777 99999999 222 9 4 4 4 4 4 4 4 2 000 7 5
consensus : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
Reference ( family-2382 ) : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|1 : GGCCTACTTCGATTGGTAAACCCGAG---------GTTA--TTGAA----AATA----AAAC-GGTAACGGAACAACTTCTGAATAACGTCACGATCAACA-TGACCTCTTTTAACCTTACCCGAGGAATCCTAGGTTACCGACCCA-ATT-AATACGCGTAATCAGGCTGATCTTTTTACGTCACAACGATG-C-GGGGAAAGGCTGAATAGTCGACGAAGTGTGAACTTAGTGTTTACCT---TTTTAA-------CTATATCTCGGGTAATAGAAAGAGTAG-G-TATTTATA-GGGACAGATATTAAAATGGA-ATGGCTAA-TGCAATTTTTCTC----TCACTTTCACCAATTACATTAAAA-AACGGTTGGAGCGGTACCCGGCCGTCGCCATTT--ATTTA-C---CTAT-CT-TTC-AACTCAT--TC-GATTAAGTTAAATCGTCTCCCGATTCATTAAG--ATA--TAGCTGTACGGCAGT-GCCCA-TGACGCTCTAATTAAGATGAACCCGAG---TTAAC
gi|10 : GGCCTACTTCGATTGGGAAACCC-----AA-----GTTAACTCGGGGGTGAATA----AA-C-GG-AACA-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACAT--ATTAACGTTACACGAGGAATCCTATAT--CCGATGCACATTTAAT-CG------------GGTATTTT-ACGTCACAACAAT
gi|11 : CTGG-TGCCACCATTTTTGTGTA-C---AT-G-CGATAT-AACCC----T-----TATATAAATTCGT---TTCATTG---CAC--AT---TTG-TTTGC-GCA-T-GTCCG-TGACT-TGTATTTAA-ATGAATTCGAG---TT--------TTTCAATATTGGAGTAGGCC
gi|12 : agTTA-C---CT-T-CGATTC-AACTC----TC-GAGTAAGTTA-CTCGT---TCGATTC---AAA--ATAATTCG-AGTAC-ACA-T-GCCCA-TGACG-TCCATTCAA-ATGAACCCAAA---TGTACACGATTTTCCCAATCGAAGTAGGTCcta
gi|13 : TTACCCGAG--ATC--AGGT--CCGACCCACATTGAAT---GGTAAT--GGC-GGAATTTT-ACGTCACAACGATGGCTGGGGAAAAG--GAA-AATTG-----TTGTGAA
gi|14 : TGAA--ACGTCATGA--AA-A-TGACCT--TTTAACCT-ACCCGAGGCATCCTAG-----------------AAT-CGGATA------------TTTT-ACGTCACAACAATGGT-GGGGAAAGG-TGAA-AGTCGGTGA-GTGTGAACTT-aaattttgcgggaaattgac
gi|15 : -T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGG--A-----A--TTTTGTC----CCACTTTCAC--ATCACCT---AA-A
gi|16 : GTAATAGAAAGAG--A-GGT-TTTTTA-GGGGCAGAAATTAAAATGGA-ATGGCTAA-Ttgg
gi|2 : GGCCTACTTCGATTGGGAAACCCGAGTTAATCCGAGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-TTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTAATTT-ATGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGACGA-GTGTGAATTT-GTGTTGACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG----G-T-TTTATA-GAGGCAGAAATTAAAATGGA-AT-GCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGTCATTT--ATTTA-C---CT-T-CAATTT-AACTC----TC-GAGTAAGATAAATCGT---TCGATTC---AAA--AT---TTG-TGTAC-GCA-T-GCCCA-TGACA-TGCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCCn
gi|3 : GGCCTACTTCGATTTG-AAACCAGAGT-----------AACTCGCGGATGAATA----AAAC-GG-GGCG-AGTAACT-CTGAA--GCGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCAACCCACATTTTAT-CGGGTAAT--GAC-GGTATTTT-ACGTCACAACTATGGC-GGGGAATGG-TGAA-AATCGGCGA-GTGTGAATTT-GTGTTTACCTAATTTTTAAGTTTTTACAATATCT--GGTAGTAGAAAGAG--A-GGT-TTTATA-GAGGCA---------------ATAGCTAA-TGCA--TTTTTTC----TTACTTTCAC--ATCTCAT---AA-AAAGG-TGGG--GGTACCCGG-CTTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTGAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACT-TTCATTTAA-ATGAA-CCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|4 : CCTACTTCGATTGGTAAACC-------G-----GTTAAC-CGAGGATGAATA----AAACAGG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT---CGAACCACATTTAAT-CGGGTAAT--GACGGGTGTTGT-ACGTCAT--CGATGGC-GGGGAAAGG-TCAA-TATCGGCGA-GTGTGAACTT-GTGTTTACC------------TTTTACTATATCT--AGTAA-AGAAAGAG--AGG-T-TTTTTAGGGGGCAGAAATTAAAATGGACATGGCTAATTGCA---TTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CATCGCCATT----TTTATC---CT-TCCGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--A----TAG-TGTAC-GCA-T-GCCCATTGACG-TT--TTTAA-AT-AATCCGAG---TTAACACGGG-TTCCCAATCGAAGTAGGc
gi|5 : GGTCTACTTCGATTGGGAAACCCGAG--------------------GATGAATA----AAAC-GG-AGCG-AGTAAC
gi|5 : ttAATTAAAATGGA-ATGGCTAA-AGCA--TTTTTTCCCCCTCACTTTCAC--ATCACAT---AA-AATGG-TGGA--GGTACACGG-CGTCGCAATTT--ATTTA-C---CT-T-CGATTT-AACTCTCGATC-GAGTAAGTTAAC----------------------AT---TAG-TCAAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataattaaaatggaatggctaaagcattttttccccctcactttcacatcacataaaatggtggaggtacacggcgtcgcaatttatttaccttcgatttaactctcgatcgagtaagttaacattagtcaacgcatgcccatgacgtccatttaaatgaa
gi|6 : ttggtctacttcgattgggaaacccgaggatgaataaaacggagcgagtaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatGCCTACTTCGATTGGGAAACCCGAGTTAA----------CTCGATGATGAATATATAAAAC-GG-AGCG-AGTAACT-CCGAA--ACGTCACGA--AA-A-TGACCT--TTTAACTTTACTCAAGGAATCCAAGCT--CCGACCCACATTTAAT-CGGGTAAT--GGC-AGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-GGAA-AATCGGTGA-GTGTGAACTT-GTGCTTACCTGCTTTTTAAGTTTTTACGATATCT--TGTAATAGAAAAAG--A-GGT-TTTATA-AAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCGGG-CTTCTTCATTT--ATTTA-C---CT-T-CGATTT-AACTG----TC-GAGTAAGTGAATGC--------------------AT---TCG-TGTAC-GCA-T-GTCCA-TGACG-TCCATTTAA-ATGAACCCGA
gi|7 : AATA----AAAA-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-AATGACCT--TTTAACTTTACTCGAAGAAACCTAGGT--TCGACCCACATTTAAT-CAGGTAAT--GGA-GGTATTTT-ACGTCA-AA----GGT---GAAAAGG-TGAA-CATCGGCGA-TCGTGAACTT-GTGTTTACCTAAGTTTTGAATTTTTACAGTACCT--AGTAATAGAAAGAGA-A-A-T-TGTATA-GAGGCAGATATTAAATTGGA-ATGACTAC-TGTA--TTTTTTC----TCACTTTCAC--ATTACAT---AA-AAC
gi|8 : TTGTTACGATATCT--AGTAATAGAAAAAG--T-G-T-TTTATA-GAGG-AGCAAATAAAATGGA-ATGGCTAA-TGCATTTTTTTTC----TCACTTTCAA--ATCA-AT---AATAACGG-CCGA--GTTCCCAGG-GGTCGCCAT-----TTTA-CAAAAA-T-CGATTCAAACTC----TCGGAGTAAATTAACTCGT---T-GATTC---AAAACAT---TCG-TGTAC-GCA-TCGCCC--TGATG-TCCCATTAA-ATGAACCCGAGTTTTTAACAC-GGTTTCCCAATCGAAG-AGG
gi|9 : GGCCTACTTCGATTGGGAAACCTGAGTTAA----------CCCGAGGATGAATA----AAAT-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-A-TTACCT--TT-AA----ACCCGAGGAATCCAAGGT--CTGACCCACACTTAAT-CGGGTAAT--GGC-AGTATTTT-ATGTCACAACGATGGT-GGGGAAAGA-TGAA-AATCGGCGA-GTGTGAACTC-GTATTTACCTAATTTTTAAGTTTTTACGATATCT--
blockSeqs : G C TTAATCCGAGTTAA T TATA A . . . . . . A . . . . G . T . . . . AAT G G AGG . G C T TT CCCC . . T . . . TTT T AAA . C A TCGA G TT AAAAC AAT T . . . C T . . TTT T G
blockSeqs : G C AAGTTAA T . . . . . . . . . . . . . . . . . . . . AAT G G AGG . . . . . . . . . . . . T . . . . . . . TC CAC . C . . . . . . . . A G
blockSeqs : T A GGTTAA T . . . . . . . . . . . . . . . . . . . . GCT G A AGG . . . . . . . . . . . . T . . . . . . . TC AAA . T . . . . . . . . A G
blockSeqs : G C TTAA T . . . . . . . . . . . . . . . . . . . . AAG A T AGG . . . . . . . . . . . . T . . . . . . . TC AAA . C . . . . . . . . A G
blockSeqs : G C TTAA C . . . . . . . . . . . . . . . . . . . . AAT G A AAA . . . . . . . . . . . . T . . . . . . . TC AAA . A . . . . . . . . A .
blockSeqs : G T TAA . . . . . . . . . . . . . . . . . . . . . . . A TG . . . . . . . . . . . . . . . . . . . . T AAA . A . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ** ** ** ** ** AAT A** AGG*** ** ** *** ** **** TC*** AAA***** ***
originalCons : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG--A-G-T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGT---TCGATTC---AAA--AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
finalCons : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCTA--GTAATAGAAAGAGAGG---T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTTC----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-C---CT-T-CGATTT-AACTC----TC-GAGTAAGTTAACTCGTTC---GATTCAAA-----AT---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
Alignments
lowQualScore : 55555555555555 111 1111 111111 111
lowQualScore : 2 1 66666666666666 2 9999 4 4 4 5 66 66 4 4 66 55 0 4 55 8 4 4 4 4 4 5 666 3 0 888 5 4 4 4 4 66 66 9999 66 777 4 5 77 5 888 4 222 4 4 5555 4 88888 777 0 444444 1 4 4 4 4 4 4 4 0 000 1 2
lowQualScore : . . .............. . .... . . . . .. .. . . .. .. . . .. . . . . . . . ... . . ... . . . . . .. .. .... .. ... . . .. . ... . ... . . .... . ..... ... . ...... . . . . . . . . . ... . .
lowQualScore : 5 4 66666666666666 0 4444 4 4 4 0 11 11 4 4 11 55 7 0 55 0 0 4 4 4 4 0 111 0 2 000 0 4 4 0 0 11 11 4444 11 888 4 7 99 0 999 4 222 4 4 6666 4 77777 888 7 888888 9 4 4 4 4 4 4 4 2 000 7 5
consensus : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAAAGAG-AGGT-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTT--C----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-CCT---T-CGATTTAA-CTC----TCG-AGTAAGTTAACTCGT---TCGATTC---AAAA--T---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
Reference ( family-2382 ) : GGCCTACTTCGATTGGGAAACCCGAGTTAA-----GTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGGCGA-GTGTGAACTT-GTGTTTACCTAATTTTTAAGTTTTTACGATATCT--AGTAATAGAAAGAG-AGGT-TTTATA-GAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTT--C----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGCCATTT--ATTTA-CCT---T-CGATTTAA-CTC----TCG-AGTAAGTTAACTCGT---TCGATTC---AAAA--T---TCG-TGTAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|1 : GGCCTACTTCGATTGGTAAACCCGAG---------GTTA--TTGAA----AATA----AAAC-GGTAACGGAACAACTTCTGAATAACGTCACGATCAACA-TGACCTCTTTTAACCTTACCCGAGGAATCCTAGGTTACCGACCCA-ATT-AATACGCGTAATCAGGCTGATCTTTTTACGTCACAACGATG-C-GGGGAAAGGCTGAATAGTCGACGAAGTGTGAACTTAGTGTTTACCT---TTTTAA-------CTATATCTCGGGTAATAGAAAGAGTAGGTATTTATA-GGGACAGATATTAAAATGGA-ATGGCTAA-TGCAATTTTTCT--C----TCACTTTCACCAATTACATTAAAA-AACGGTTGGAGCGGTACCCGGCCGTCGCCATTT--ATTTA-CCTA--T-CT-TTCAA-CTCAT--TCG-ATTAAGTTAAATCGTCTCCCGATTCATTAAGA--TA--TAGCTGTACGGCAGT-GCCCA-TGACGCTCTAATTAAGATGAACCCGAG---TTAAC
gi|10 : GGCCTACTTCGATTGGGAAACCC-----AA-----GTTAACTCGGGGGTGAATA----AA-C-GG-AACA-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACAT--ATTAACGTTACACGAGGAATCCTATAT--CCGATGCACATTTAAT-CG------------GGTATTTT-ACGTCACAACAAT
gi|11 : CTGG-TGCCACCATTTTTGTGTA-CAT---G-CGATATAA-CCC----T-----TATATAAATTCGT---TTCATTG---CACA--T---TTG-TTTGC-GCA-T-GTCCG-TGACT-TGTATTTAA-ATGAATTCGAG---TT--------TTTCAATATTGGAGTAGGCC
gi|12 : agTTA-CCT---T-CGATTCAA-CTC----TCG-AGTAAGTTA-CTCGT---TCGATTC---AAAA--TAATTCG-AGTAC-ACA-T-GCCCA-TGACG-TCCATTCAA-ATGAACCCAAA---TGTACACGATTTTCCCAATCGAAGTAGGTCcta
gi|13 : TTACCCGAG--ATC--AGGT--CCGACCCACATTGAAT---GGTAAT--GGC-GGAATTTT-ACGTCACAACGATGGCTGGGGAAAAG--GAA-AATTG-----TTGTGAA
gi|14 : TGAA--ACGTCATGA--AA-A-TGACCT--TTTAACCT-ACCCGAGGCATCCTAG-----------------AAT-CGGATA------------TTTT-ACGTCACAACAATGGT-GGGGAAAGG-TGAA-AGTCGGTGA-GTGTGAACTT-aaattttgcgggaaattgac
gi|15 : T-TTTATA-GAGGCAGAAATTAAAATGGA-ATGG--A-----A--TTTTGT--C----CCACTTTCAC--ATCACCT---AA-A
gi|16 : GTAATAGAAAGAG-AGGT-TTTTTA-GGGGCAGAAATTAAAATGGA-ATGGCTAA-Ttgg
gi|2 : GGCCTACTTCGATTGGGAAACCCGAGTTAATCCGAGTTAACTCGAGGATGAATA----AAAC-GG-AGCG-AGTAACT-TTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCGACCCACATTTAAT-CGGGTAAT--GGC-GGTAATTT-ATGTCACAACGATGGC-GGGGAAAGG-TGAA-AATCGACGA-GTGTGAATTT-GTGTTGACCTAATTTTTAAGTTTTTACGATATCT--GGTAATAGAA--AG-AGGT-TTTATA-GAGGCAGAAATTAAAATGGA-AT-GCTAA-TGCA--TTTTTT--C----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CGTCGTCATTT--ATTTA-CCT---T-CAATTTAA-CTC----TCG-AGTAAGATAAATCGT---TCGATTC---AAAA--T---TTG-TGTAC-GCA-T-GCCCA-TGACA-TGCATTTAA-ATGAACCCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCCn
gi|3 : GGCCTACTTCGATTTG-AAACCAGAGT-----------AACTCGCGGATGAATA----AAAC-GG-GGCG-AGTAACT-CTGAA--GCGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT--CCAACCCACATTTTAT-CGGGTAAT--GAC-GGTATTTT-ACGTCACAACTATGGC-GGGGAATGG-TGAA-AATCGGCGA-GTGTGAATTT-GTGTTTACCTAATTTTTAAGTTTTTACAATATCT--GGTAGTAGAAAGAG-AGGT-TTTATA-GAGGC--------------A-ATAGCTAA-TGCA--TTTTTT--C----TTACTTTCAC--ATCTCAT---AA-AAAGG-TGGG--GGTACCCGG-CTTCGCCATTT--ATTTA-CCT---T-CGATTTAA-CTC----TCG-AGTAAGTGAACTCGT---TCGATTC---AAAA--T---TCG-TGTAC-GCA-T-GCCCA-TGACT-TTCATTTAA-ATGAA-CCGAG---TTAACACGGGTTTCCCAATCGAAGTAGGCC
gi|4 : CCTACTTCGATTGGTAAACC-------G-----GTTAAC-CGAGGATGAATA----AAACAGG-AGCG-AGTAACT-CTGAA--ACGTCACGA--AA-A-TGACCT--TTTAACCTTACCCGAGGAATCCTAGGT---CGAACCACATTTAAT-CGGGTAAT--GACGGGTGTTGT-ACGTCAT--CGATGGC-GGGGAAAGG-TCAA-TATCGGCGA-GTGTGAACTT-GTGTTTACC------------TTTTACTATATCT--AGTAA-AGAAAGAG-AGGT-TTTTTAGGGGGCAGAAATTAAAATGGACATGGCTAATTGCA---TTTTT--C----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCCGG-CATCGCCATT----TTTATCCT---TCCGATTTAA-CTC----TCG-AGTAAGTTAACTCGT---TCGATTC---AAAA------TAG-TGTAC-GCA-T-GCCCATTGACG-TT--TTTAA-AT-AATCCGAG---TTAACACGGG-TTCCCAATCGAAGTAGGc
gi|5 : GGTCTACTTCGATTGGGAAACCCGAG--------------------GATGAATA----AAAC-GG-AGCG-AGTAAC
gi|5 : ttAATTAAAATGGA-ATGGCTAA-AGCA--TTTTTT--CCCCCTCACTTTCAC--ATCACAT---AA-AATGG-TGGA--GGTACACGG-CGTCGCAATTT--ATTTA-CCT---T-CGATTTAA-CTCTCGATCG-AGTAAGTTAAC--------------------A--T---TAG-TCAAC-GCA-T-GCCCA-TGACG-TCCATTTAA-ATGAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataattaaaatggaatggctaaagcattttttccccctcactttcacatcacataaaatggtggaggtacacggcgtcgcaatttatttaccttcgatttaactctcgatcgagtaagttaacattagtcaacgcatgcccatgacgtccatttaaatgaa
gi|6 : ttggtctacttcgattgggaaacccgaggatgaataaaacggagcgagtaacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnatGCCTACTTCGATTGGGAAACCCGAGTTAA----------CTCGATGATGAATATATAAAAC-GG-AGCG-AGTAACT-CCGAA--ACGTCACGA--AA-A-TGACCT--TTTAACTTTACTCAAGGAATCCAAGCT--CCGACCCACATTTAAT-CGGGTAAT--GGC-AGTATTTT-ACGTCACAACGATGGC-GGGGAAAGG-GGAA-AATCGGTGA-GTGTGAACTT-GTGCTTACCTGCTTTTTAAGTTTTTACGATATCT--TGTAATAGAAAAAG-AGGT-TTTATA-AAGGCAGAAATTAAAATGGA-ATGGCTAA-TGCA--TTTTTT--C----TCACTTTCAC--ATCACAT---AA-AACGG-TGGA--GGTACCGGG-CTTCTTCATTT--ATTTA-CCT---T-CGATTTAA-CTG----TCG-AGTAAGTGAATGC------------------A--T---TCG-TGTAC-GCA-T-GTCCA-TGACG-TCCATTTAA-ATGAACCCGA
gi|7 : AATA----AAAA-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-AATGACCT--TTTAACTTTACTCGAAGAAACCTAGGT--TCGACCCACATTTAAT-CAGGTAAT--GGA-GGTATTTT-ACGTCA-AA----GGT-GA--AAAGG-TGAA-CATCGGCGA-TCGTGAACTT-GTGTTTACCTAAGTTTTGAATTTTTACAGTACCT--AGTAATAGAAAGAG-AAAT-TGTATA-GAGGCAGATATTAAATTGGA-ATGACTAC-TGTA--TTTTTT--C----TCACTTTCAC--ATTACAT---AA-AAC
gi|8 : TTGTTACGATATCT--AGTAATAGAAAAAG--TGT-TTTATA-GAGG-AGCAAATAAAATGGA-ATGGCTAA-TGCA--TTTTTTTTC----TCACTTTCAA--ATCA-AT---AATAACGG-CCGA--GTTCCCAGG-GGTCGCCATTT-----TA-CAAAAAT-CGATTCAAACTC----TCGGAGTAAATTAACTCGT---T-GATTC---AAAACAT---TCG-TGTAC-GCA-TCGCCC--TGATG-TCCCATTAA-ATGAACCCGAGTTTTTAACAC-GGTTTCCCAATCGAAG-AGG
gi|9 : GGCCTACTTCGATTGGGAAACCTGAGTTAA----------CCCGAGGATGAATA----AAAT-GG-AGCG-GGTAACT-CTGAA--ACGTCACGA--AA-A-TTACCT--TT-AA----ACCCGAGGAATCCAAGGT--CTGACCCACACTTAAT-CGGGTAAT--GGC-AGTATTTT-ATGTCACAACGATGGT-GGGGAAAGA-TGAA-AATCGGCGA-GTGTGAACTC-GTATTTACCTAATTTTTAAGTTTTTACGATATCT--