lowQualScore : 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 222 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 11 4444444444 11 222 1 22 1 444444 1 1 555555555555555555555 1 2222 22222222222222 1 11111111111 33333333333 11 1 11111111 33333 8888888888888888888888888888 1 222 1 1 1111 2222 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 11 4444 2 1 2 3333333333333333 66666666 2 5555 333 1111 222 1 4444444444444 555555555555555555 1 11 1 1 222222222 3333 222 2222 11 3333333333 22 1 1 44444444 1 7777777777777777777777777777777777777777777 11 1 1 333333 22222 222 1 44444 1 3333 333 1 2222 111 1 55555555555555555 1111111 222 2
lowQualScore : 888 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 0 4 3 88 7777777777 99 3 4 111 5 4 55 5 000000 4 3 3 6 777777777777777777777 2 0 7777 3 88888888888888 4 5 4 77777777777 66 33333333333 2 3 00 0 88888888 0 33333 0 0 1 8888888888888888888888888888 8 3 333 3 0 6 7 11 0 6666 1111 99999 0 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 88 4444 6 3 0 5 0 9999999999999999 99999999 3 0 6 4444 555 5555 000 0 6666666666666 2 000000000000000000 4 0 8 33 2 2 777777777 6666 333 6666 66 7777777777 7 8 00 3 7 3 6 11111111 3 6666666666666666666666666666666666666666666 88 3 3 000000 6 88888 777 3 11111 6 3 6666 111 4 8 0 3 7 2222 666 3 7 88888888888888888 8888888 999 0
lowQualScore : ... ...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... . . . .. .......... .. . . ... . . .. . ...... . . . . ..................... . . .... . .............. . . . ........... .. ........... . . .. . ........ . ..... . . . ............................ . . ... . . . . .. . .... .... ..... . ............................................................................................................................................................................................................................... .. .... . . . . . ................ ........ . . . .... ... .... ... . ............. . .................. . . . .. . . ......... .... ... .... .. .......... . . .. . . . . ........ . ........................................... .. . . ...... . ..... ... . ..... . . .... ... . . . . . .... ... . . ................. ....... ... .
lowQualScore : 555 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 0 55 0000000000 55 0 0 000 0 0 55 5 000000 7 3 3 0 000000000000000000000 5 5 0000 2 00000000000000 0 0 0 88888888888 55 88888888888 0 5 00 0 88888888 7 33333 7 7 0 7777777777777777777777777777 3 3 333 3 7 0 2 55 0 5555 2222 77777 7 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 00 0000 0 0 0 5 0 0000000000000000 55555555 0 0 0 0000 777 0000 222 0 5555555555555 5 222222222222222222 0 0 8 88 0 3 000000000 0000 333 7777 33 0000000000 3 3 77 3 3 3 7 33333333 3 7777777777777777777777777777777777777777777 77 3 3 333333 7 33333 333 3 00000 7 3 0000 000 7 3 7 3 3 7777 777 3 3 00000000000000000 3333333 888 0
consensus : NGTTTTTTTTATCTTCTATTAAAACGTATATCTTNATTAAAATTNTATA-TATCATAACAATTCA-TATATCG-CACATGCC-ATATATCAATAT-CATATC--A-ATCTA-T--TATCGAATCATACATGTCATA-TTA-----AATT--ACAATC----TATTATTT--T-CA-A-CATATATA---TCACACACA----GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAAA--GAGCGTTTTCCTAATC--TTATAATAAATAA-ATCATCTTTCAACTTTACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGTG-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAGATTTNGTTTTCCGACATTTCTTCCGATCTCATTGNTTNATAATTCCTGCATTTTCATTTTAATCATCTTTATNTATGT-ATAANAAACTCACACGNGATATAAGGACTATT--AGTTATTTCANAAAGTGGNNGCTTTTTCGTTTGNTTTTCNTAANGAAAANATTCCCAAGCACANATAGTTTTCCNATGNTANTGTCCANANTTNNAGAAANGTAGCCAGTTGAACTTCCCGCCNAATAANATNTGTNACNATTTTTGCAGCANCACAAAAAAGATGTTTT-T-GT----TT--TCTTC-ANTTTTA--AACAGTTTA-CGC-AAAG--GTGATACA-T-NTTTG-TT-CAN-TTGCTTA---AAAACA---TT--GT-ATT---C-AAAATACC-ATNT-AAAT----ATTTATAGC--AATTCG-AT----AT-----T--CT-T-TTTTCCA--GTC-T--TAGTNAT-T----GCTAT-TA----TTTNTA-CATAGGTGCA-TTCC-AA-A--TACAA-TCTCTGTTAT--GTTGAATTCTCATTTCGCNTCTATTTTCATACCAANGGNTTTTGAAATTAATTTTATCNACCANTANACANTGAATAGTAAAANTTGCTTTCNACATCATCTAGCANGAATTTTACAANAT-TGT-TCCTAAACTTCAAAAAAGATNGACANCCTGTTTTATTNTNACATGATTTGCATAGGAACAACCAAATT-TTTTGT----AGTATNTTCCAACNGCCTTNTTTA--GCGTATAATATTCACATAAN--AGA--T--TGTTCTTTTTCNAAATCTTGTT-TG-A--AA--AATATAG-----AATATCGTGC-AT--TTCTCC--T-TC-GTC------GAATATA-TCT---TTCG-TATATAAAATNCCGC-TCTGTA-TCC----AGTTTTTAAAACAAAAGGGTTTTGAT-T--ATTGTATT-GAAANAAT-T-TTG-TCCANATGAACTNNNTNAGAAAATATTNATCTCTTTTAACGTTTTATATNAAGTTCAAATTTGCTTAATTGTTTAGCGTCTGTNGAANNCNTGAANGNACGTCCCCATTAGAAAAG--AGNCGNGCCTTANACATCTTGGAAAAA-ATTGGAATCTTAAAAATTTTATNCTCCANNGGTCTTAATCAAAATGTTCAAATACAGAGATGCTATGNTGCGCGTAAAATATCGCTCAGGCGTTCTATATTGTATAAACACTTTCTACATGTTTANCATCTCTACTAATCCCATGA-TGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAA-TGA---TNCCAATGCCCC-GCGTTCAA--C----C-TTNCC-AATCAA--TGTATTTCTCTTGATCCT-T-C--TCTTTTTTTCCAAATAAAGTTA-A-ATATAAG---TTTTGAAAC--GCTTTTGAAAAAATT-----ATC--CAGGGTTTTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A-C--GTA-------------------T-------------TTTCC-AAC-ATCGTCAG-ATTT----CGTCTTTTC-C--ACGAC-TNTGTA-TTTTTC---A-GTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAA-CATNAATTTTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AG--TC--T-GCGTTTTTACGCCACT-TATGCCAAATACGTTTGGT
Reference ( gi|2 ) : GGTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA-TATAT-A-CACATGCCCATAAGTCAATACGCATATCTCA-ATCTA-G--TATTAAATCATACATGTC----TTA-----AATT--ACAATCTTCTTATTATTTC-T-CA-A-CATATACA---TCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AAAGGGAGGG----CCTTATCCGTT-CAGTAAATAATAT-A---TTCA--CTTACCAAT-GTTTGACCCAG--CGCAAGAGTGTGTGTGTGACGCTAAAAAAGCTC--ATA-TGTTAAGA-TTCCG--TCGTAGATTTTG--TTCTGACATT------GAT-TCATTGATTTA-A---CCTGCGT---CATTATAGTCATC-TTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAATTT--CAATGTT-ATGTCCAAAATTAAATAAAAG-----AATT--ACTTTCTGCCAAATAAGATTTGTCATCA-TTT----ACAATATACAAAAGATGTTTT-TAGTGTACTT--TCTTCCAGTTGTACAAAAAATTCATCAC-AAAG--GTGATACA-T-ACTTG-TT-CAT-TTGCTCACAAAAAACA--GTTAGGTAATT---CAAAAATACC-ATGTCAAAT---TATTAATAGC-GAATTCA-AT----AT-----TACCT-TGTTTTCCA-TATC-TAGTAGTGATTT----ATTATCTAT---TTTGTATTATAGGTGCA-TCCC-AA-A--TACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACA-----TTTCAT-TCAAAGGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCAAACT-TTTTGT----AGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCACATAAT--AGA--T--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCCTGTCTC-GTT------GAAAATA-TCT---TTTG-TGTACAAAATACCAC-TCTGTA-TCC----AGTTTTTAAAACATAAGAGCTTTGA-----ATTGTATTTAAAAAAGTGTGTTGCTCCATAAAAATTCACTTAGAAA---TTCGTCTC-TTT-----------TGAAATTC------GCTT-----TTT-ACATCTATTGAATGCG-GAAAGGACATTTCCAT---AAAACCTAGGAATA-TTTAA-CATTTC--AAAAATATTGGA--TTTAGTGCATTTATAC-ACATTGGTCTTAATTAAA---T-CAAATACAGAAATAGTGTGTTGC-TGTAAAATATCACTTAG-CGTTTTATAT-GT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-A-T-A---TTTCAATACCCCCACATTCAA--C----C-TTACC-AATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--A-ATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A-T--GTA-------------------T-------------TTTCCGAAC-ATCGTCAG-ATTT----CGTCTTTTC-C--ACAACTTTTGTA-TTTTTC---A-GTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-A-CATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AG--TC--TAGCGTTTTTACGCCACT-TATGTCCAATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATA-TATCATAACAATTCATTATAT-GTCATAT-CTCAT---TC-ATATCTATATCATACATC-A-T--TATT-ATTCATA-ATGCCATATTCA-----TATC--ATAATC--ATTATTATTTCAT-TA-ATCACATACA---T
gi|4 : TTTTTTT---TTCT-------C---T---TTTATTAAAATTC--------------AA---A-TATATCA-CACATACC-ATATATCAATAC--ATATC--A-ATCTA-TACTATTGAATCATACATGTCATAATTATATTTAATTGTACAATCTC--TAT-ATTT--T-CATA-CATATATA---TCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAAA--GAGCGTTTTCCTAATC--TTATAATAAATAA-ATCATCTTTCAACTTTACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGTG-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAGATTTGGTTTTCTGACATT------GATCTCATTAATTTATA---CCTG------CATT----TCATCTTTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATT---TAAAGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACATA-AATTTTCCAA-GTTAATGT-CAAAATTACA-AAATG-----AGTTGAACTTCTCG-CAAAT-AGATTTGTT-TCATTTT----ACATCATAACAAAG-TGTTTT---GTGTCTTC--TCTT-CAGTTTT---AACAATTCA-CACAAAAG--GTGATACACT-CTTTGTTT-CACATTGTTC---AAAAACATTGTT---TAGTT---C-CAAATACCGATTT--GAT---AATTTATAGC--AATT-G-AT----ATCAAGCTATCTCTTTTTTCCA--GTCATTCTAGTGA--T----GTTA--------TTTGTATCATA--TGCATTTCC-AA-ATTTACAG-TCTCTGTTAT--GTTAAATTCTCTTTTC-CATCTATTTTCAT-TCAAAGGGTTTTGAAATT----TTA--TATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTTA-TAG--ATTTTACAATAT-TGT-ttcaatttaacaattcaattaacacaaccagtttccaccattccttatataaagtcatttctattttttgcccaatattttgcattatcatattctctggattaagaattttcattttaagtttgtataggagttgcttgttccaacatttcttccgattcttgcttaaaattcttgcattttcattttaatatttatatatatataaaaaactcacaaaggatataaggttatttcaaaagggttgttttttcgtttatttttcatggaaaatattcccaatacaatagtttccatggtttatccacatttcaagaaaagtagccaattttcttcccataacatgtgtgacaattttgcagcaatacaaaaaagatgttttatggttttcatcaacttgcaagttttcgcatagtggagatacatcgtttgttccattgcttaacatttacattattgttcaaaataccataaaatagttattatagttaaatccctctgaattcttttttccaacatcttcttaattttgtgactatatatatttttccaatatagatatacccctaatatacaaacatttgtttccatctgtttttcataccaatggtttgaaattaattttatcaaccaaacacaattagtaaaatttactttaacatctctagcatgaattttacaaaacatgtgtcctaaacaaaaaagataaacaggttttattttgatatattttgaataactacaatcaaatttttgtttagagattttaattggcttatttaaagcatatatattcacaaagaaatgttattttctttccaatttgttctgatgaagatgtagtatatcatgttatttttcttttttccgtttttcataaatataatctttcatatataaaattccactctgtattccaatttttcaaacatagtgttttgatattcattacgtttgaaacaatgtattaacttcgccttttgtattgaaagagtttttgtccaaataaattgactaagaaaatattctctctttaacgttttatatcaagttgctttttggatctataaaaagcttgaaaatatattcccattagaaaagagggaggtttaaacattttggaaaaaattggaatcttaaaaattttattctcagaagtttttaaaatgtcaaatagagatgctatagtgctgtaaaatatcgttcagtgttctattgtataaacactttctacatgttagtatctctacttcccatgattgctttggcggcattaaatttgctctttcaatatcaatgataccaatgccccgtgctcaaattttttccaataagttgtatttcgtctgatttcggtcttcgttttcaaataaagttatatattagttttgagaccagccttggaaaaaattcttggctttagggttttctaaaataaaagcattactatagtatctccgggagattgccagtgtaattgaatttattgtgcaatttttccaaactattgtaaagtttttcccatttttccaaacaactcagtattttttctaaacttttctacttgctctgtccaaattcttttcatagcattcaatttatttatgcccacaggtaaataccaagtgattttacggcagtttctgaattttcacacatgaatacatttggtt
gi|13 : tgtaA-TATATCA-CACATGCC-ATATATCAA-ATACATATC--A-ATCTGTA--TATCATATCATACATGTC----ATA-----AATT--A---------TATTAATTA-TACA-A-TATCTATATTTTCACACACA
gi|1 : tttttttgtcccttttttaaaaaattaaaTTG--TTCCAACATTTCTTCCGAT-TC-TTGCTTAA-AATTCTTGCATTTTCATTTTAAT-AT--TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAGTTT--CCATGGT-TTATCCACATTTCAAGAAAAGTAGCCAATT-----TTCTTCCCA-TAACATGTGTGACAA-TTTTGCAGCAATACAAAAAAGATGTTTTATGGT----TT--TCATCAACTTGCA-----AGTTT-TCGC-ATAGTGGAGATACA-TCGTTTG-TT-CCA-TTGCTTA------ACA--TTTACATTATTGTTCAAAA-TACC-ATA--AAATAGTTATTA-TAGT-TAAATCC-CTCTGAAT-----T--CT-T-TTTTCCAACATC-T--TCTTAATTTTGTGACTATATATATTTTTCCAATATAGATATA-CCCCTAATA--TACAAACATTTGTT-----------TC-CATCT-GTT-----TTTCATACCAATGGTTT--GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTT-AACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCAAA-T-TTTTGTTTAGAG-ATTTT--AATTGGCTTATTTAAAGCATATA-TATTCACA-AAG--AAA--TGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCTTTTTTCCGTTTTTCATAAATATAATCT---TTCA-TATATAAAATTCCAC-TCTGTATTCC----AATTTTTCAAACAT-AGTGTTTTGATATTCATTACGTTTGAAACAATGTATTcacacatgc
gi|10 : gttttttttatcttttattaaaatgtatatcttaattaaaattgtatatatcataacaattcattatatgtcatatctcattcatatctatatcatacatcattattattcataatgccatattcatatcataatcattattatttcattaatcacatacatttcaatttaacaattcaattaacacaaccagtttccaccattccttatataaagtcatttctattttttgcccaatattttgcattatcatattctctggattaagaattttcattttaagtttgtataggagttgcACAAAAGATTTTTT-T-------TTCATCTTC--ATTTTATAAAT--TTTA-CAC-AAAG--GTGATAAA-T-TTTTG-TTCCAT-TTTCTTACATAAAACA---TT-GGT-ACT---C-AACATACC-ATGTAAAG-----ATTTATAGCTAAATTCAGAT----AT-----T--CT-T-TTGTC------------AGTCAT----------TCTAG---TTTATA--AT-GGT----TTCC-AG-A--CACAATTCTCTGTAAT--GTTGAATTTTCATTaacttcgccttttgtattgaaagagtttttgtccaaataaattgactaagaaaatattctctctttaacgttttatatcaagttgctttttggatctataaaaagcttgaaaatatattcccattagaaaagagggaggtttaaacattttggaaaaaattggaatcttaaaaattttattctcagaagtttttaaaatgtcaaatagagatgctatagtgctgtaaaatatcgttcagtgttctattgtataaacactttctacatgttagtatctctacttcccatgattgctttggcggcattaaatttgctctttcaatatcaatgataccaatgccccgtgctcaaattttttccaataagttgtatttcgtctgatttcggtcttcgttttcaaataaagttatatattagttttgagaccagccttggaaaaaattcttggctttagggttttctaaaataaaagcattactatagtatctccgggagattgccagtgtaattgaatttattgtgcaatttttccaaactattgtaaagtttttcccatttttccaaacaactcagtattttttctaaacttttctacttgctctgtccaaattcttttcatagcattcaatttatttatgcccacaggtaaataccaagtgattttacggcagtttctgaattttcacacatgaatacatttggtt
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTAA-TT-TTTTGT----AGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCACATAAA--AGA--T--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T---------TC-ATC------GAAAATA-TCT---TTTG-TGTATAAGATACTTC-TCTGCA-TCC----AGTTTTTAAAACAAAAGGGCTTAGATCTAGATTGTcaaag
gi|16 : ATTTGCAAAGGAACAACCAGAAG-TCT-GT----TGTATGTTCTAACAGCC-TTTTT-------------TTCATATAA----GG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--Atgta
gi|8 : ACGACCAAATTGTTCTAT----AG-ATTTT--AATTGCTTTTTTAA--GCATATTATATTCAC-TAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCC-GTATC-ATC------AAATATA-TCTTAATTTGATATATAAATTCCGACTTCT----TCCTTTAAGTTTTT
gi|11 : aaatatttctttgaatatattagaataactAATGCCGC-TCTTTA-TCC----TATTTTCAAAACAAACAGGTTTTGA-----ATCATATAGATAAAGAT---------CATATGAACTCTGTTAAAAA---TTGATCTCTTTT-----------TGAAGTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT---AAAA---AGCCGTACCTTAT-CATCTT--AAAAA
gi|1 : gTTGTATT-GAAAGAGTTT-TTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTC-TTTAACGTTTTATATCAAGTT-------GCTT-----TTT-GGATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAAG--AGGGAGG-TTTAAACATTTTGGAAAAA-ATTGGAATCTTAAAAATTTTATTC-TCAGAAGTTTT---TAAAATGT-CAAATA--GAGATGCTATAGTGC-TGTAAAATATCGTTCAG-TGTTCTAT-T-GTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAA-TGA---TACCAATG-CCCCGTGCTCAAATT----T-TTTCC-AAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT--ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AGT--GTAATTGAATTTATTGTGCAATT-------------TTTCCAAACTATTGTAAA-GTTTTTCCCAT-TTTTC-CAAACAAC-TCAGTA-TTTTTTCTAA-ACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCAT-AGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTTTC--T-GAATTTTCACAC------ATG---AATACATTTGGT
gi|3 : gttttttttatcttttattaaaatgtatatcttaattaaaattgtatatatcataacaattcattatatgtcatatctcattcatatctatatcatacatcattattattcataatgccatattcatatcataatcattattatttcattaatcacatacatttcaatttaacaattcaattaacacaaccagtttccaccattccttatataaagtcatttctattttttgcccaatattttgcattatcatattctctggattaagaattttcattttaagtttgtataggagttgcttgttccaacatttcttccgattcttgcttaaaattcttgcattttcattttaatatttatatatatataaaaaactcacaaaggatataaggttatttcaaaagggttgttttttcgtttatttttcatggaaaatattcccaatacaatagtttccatggtttatccacatttcaagaaaagtagccaattttcttcccataacatgtgtgacaattttgcagcaatacaaaaaagatgttttatggttttcatcaacttgcaagttttcgcatagtggagatacatcgtttgttccattgcttaacatttacattattgttcaaaataccataaaatagttattatagttaaatccctctgaattcttttttccaacatcttcttaattttgtgactatatatatttttccaatatagatatacccctaatatacaaacatttgtttccatctgtttttcataccaatggtttgaaattaattttatcaaccaaacacaattagtaaaatttactttaacatctctagcatgaattttacaaaacatgtgtcctaaacaaaaaagataaacaggttttattttgatatattttgaataactacaatcaaatttttgtttagagattttaattggcttatttaaagcatatatattcacaaagaaatgttattttctttccaatttgttctgatgaagatgtagtatatcatgttatttttcttttttccgtttttcataaatataatctttcatatataaaattccactctgtattccaatttttcaaacatagtgttttgatattcattacgtttgaaacaatgtattaacttcgccttTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA----TATGTTGTGCGTAAA-TATCACTTAGGCGT---ATATTGT-TAA--ACTTT------GTTTATCAT-TCTACTAA--CCATA---GCGTTTACAGCATAAAATTT----CTT-CAACATC-A-T-AACTTTCCAATACCCC-ACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAA-ATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA-C--GTA-------------------TTTGACGATGTGCATTTCCCAAC-ATCGTCAG-ATTT----C-TCTTTCCAC--ACGACTAGTATT-TTTTTCA--A-GTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAA-CATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AG--AC--TTGCG-ATTTAC-CCACTATATATt
gi|18 : atGA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAA-TGA---TACCAATGCCGC-----TCAA--T----T-TTTCC-AATAAG--TGTATTTCattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|5 : AAATTTG--CTTTTCAACATT-AAT-A---ATTCAATACCCC-A-ATTCAA--CATACC-TTACC-AATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTTA-A-ATATAAAGTTTTTTGAAAC--A-TTTTGAAAA--TT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--A-TTCGTA-------------------T-------------TTCC--AAC-ATCGTCAGTATTT----CGTCTTTT--C--ACATC-TTTGTATTTTTTC---AGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAA-CATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AG--TCTTTA-CATTTTTACGCCACT-TATGCCAAATACG-TTGGTgttt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|12 ): TGTATATTGATATTTTTTTTCTCTTATTTAAAAGATAATTCAAATATATCATACATGCCATAAAATTATACAAATACATATCAATGTCTATATTTTCATACATACATATCATACAGCGAAAGATCAATATCTGAATATATGCT
Unaligned ( gi|14 ): ACATTATTGTTCAAAATACCATTAAGCCTAAATAGTTTACAGTTTAAAAATTCTGATATTCTTTTTTCGTACATTTAATTTTCGTGATATACTGTATATAT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 11111111111111111111111111111111111 1111111111111111111111111111111111111111111
lowQualScore : 222 2 22 11 11 2222 1111 33333333333333 66666666666666666666666666666666666 22222 222222 111111 44444444444444444444444444444444 33 1 33333333333 11 11 1 444444444444444 1 66666666666 222222 11 22222 222 111 555555 2 4444444 222222222222222222 2 1 2 5555555555 222 22 3333 33 1 33 22 1 555555555555 2222 1111 666666 55555555555 1 3333333333 1 1 11 1111 1 1 11 2222222 111 4444444 3333333333333333 5555555555555555555555555555555 9999999999999999999999999999999999999999999999999999 1111 1 1111 2 111 2 1 22 1 4444 222 11 3333333 1 1 3333 11 111 1 11 1 11 111 111 11 1111 11 22222 5555555555555555555555555555555 1 111 111 666666666666666666666666666666666666 11 1111 111 222222 44444 1 5555555555 222 11 22222222222222222222222222222222222 111 22 44444444444444 1 11 22 5555 11111 22 2 222 2 111 44444 2 2222 11 111 11 2222222 111 11 1 111111 11 111 2222 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 1111 1 33333 1 2222 1 1111 1 1 1 3333333333333 1 111 2
lowQualScore : 4 0 7 111 1 1 0 6 22 8 22 8 11 6 1111 4444 0 66666666666666 88888888888888888888888888888888888 999 55555 9999 777777 2 0 222222 11111111111111111111111111111111 11 7 2 22222222222 11 88 2 555555555555555 3 88888888888 666666 44 55555 333 1 999 0 777777 3 7 1 1111111 777777777777777777 1 3 3 1 3 3 11 7 2222222222 444 88 222 44 1 1 2222 1 00 77 4 7 0 00 1 7 1 11 6 1 1 22 5 1 444444444444 5555 7 1 1 0000 000000 11 0 3 33333333333 1 0 1 8888888888 0 2 0 33 2222 0 0 11 6666666 444 8 4444444 8 8 0000000000000000 8 1111111111111111111111111111111 8 0 8888888888888888888888888888888888888888888888888888 666 3333 0 4444 0 3 3 666 3 0 3 8 99999 3 44 1 4 4444 888 0 88 1 0 1 6 3 1 33 7 4444444 1 0 0 11 8888 11 11 111 1 1 0 1 8 0 8 11 0 1 11 1 0 1 111 4 66 8 111 8 11 1 44 8 3333 33 55555 2222222222222222222222222222222 4 0 777 2 3 111 999999999999999999999999999999999999 33 7777 3 444 888888 66 2 1 33333 3 1 2222222222 1 0 0 333 1 999 33 99999999999999999999999999999999999 999 0 1 22 44 1 1 0 0 11111111111111 9999 88 2 44 4 88 4 1 22 22 6 7 0 2222 7 77777 1 44 7 0 0 3 666 7 3 333 00000 7 11 3 8888 00 55 444 8 11 6 11 1 8 77 4444444 222 5 11 6 0 2 444444 33 777 6666 3 55555 33 3 4 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 2 1111 0 66666 2 0 4444 3 1 4 0 3 4444 0 0 0 3 1111111111111 3 6 2 0 777 3
lowQualScore : . . . ... . . . . .. . .. . .. . .... .... . .............. ................................... ... ..... .... ...... . . ...... ................................ .. . . ........... .. .. . ............... . ........... ...... .. ..... ... . ... . ...... . . . ....... .................. . . . . . . .. . .......... ... .. ... .. . . .... . .. .. . . . .. . . . .. . . . .. . . ............ .... . . . .... ...... .. . . ........... . . . .......... . . . .. .... . . .. ....... ... . ....... . . ................ . ............................... . . .................................................... ... .... . .... . . . ... . . . . ..... . .. . . .... ... . .. . . . . . . .. . ....... . . . .. .... .. .. ... . . . . . . . .. . . .. . . . ... . .. . ... . .. . .. . .... .. ..... ............................... . . ... . . ... .................................... .. .... . ... ...... .. . . ..... . . .......... . . . ... . ... .. ................................... ... . . .. .. . . . . .............. .... .. . .. . .. . . .. .. . . . .... . ..... . .. . . . . ... . . ... ..... . .. . .... .. .. ... . .. . .. . . .. ....... ... . .. . . . ...... .. ... .... . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... . .... . ..... . . .... . . . . . .... . . . . ............. . . . . ... .
lowQualScore : 0 7 3 000 0 0 0 5 00 0 88 0 00 0 4444 8888 8 88888888888888 88888888888888888888888888888888888 666 44444 0000 666666 5 8 222222 22222222222222222222222222222222 77 3 3 77777777777 00 33 0 333333333333333 3 77777777777 000000 77 00000 333 0 777 7 777777 3 3 0 0000000 333333333333333333 0 7 3 0 3 7 77 3 3333333333 333 00 777 33 0 0 3333 0 33 33 0 3 7 33 0 3 0 33 7 0 0 00 0 0 333333333333 7777 3 0 0 0000 000000 77 7 2 22222222222 2 0 0 2222222222 0 0 0 88 0000 0 0 00 0000000 000 0 4444444 0 0 0000000000000000 0 0000000000000000000000000000000 0 8 2222222222222222222222222222222222222222222222222222 000 8888 0 8888 0 2 5 222 2 2 5 7 77777 3 33 0 0 7777 000 7 33 0 7 0 7 7 0 00 3 0000000 0 0 0 33 0000 00 77 333 0 0 5 4 0 8 0 88 6 0 00 0 6 0 888 6 66 0 888 8 00 0 44 0 0000 88 00000 0000000000000000000000000000000 0 0 555 0 2 000 444444444444444444444444444444444444 00 0000 2 000 888888 88 2 2 55555 3 0 7777777777 0 7 7 000 0 777 33 00000000000000000000000000000000000 333 7 0 00 77 0 0 7 7 33333333333333 0000 33 0 33 0 55 0 0 33 00 7 3 7 7777 3 33333 0 00 3 7 7 3 333 3 7 000 00000 3 77 3 7777 88 88 222 0 66 4 00 0 0 88 4444444 000 0 00 5 5 5 888888 22 555 2222 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 0 8888 0 00000 5 0 8888 2 0 0 0 2 8888 0 0 0 2 2222222222222 2 5 5 0 333 7
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAAT-ATATCACACATGCC-AT--ATATCAATAT-CATATC--AATC--TATA-TATTAAATCATACATGTCAT--A-TTATATT-A-ATT--ACA----ATC-T--TAT-TATTT-TCATACATATATATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-A--GAGC--GTTTCC-CTAATCC-TTATAGTAAATAA-ATCAT--TTCAACTTT--ACCCATCGTTT---CCTGCACG-AANAGCGTGT-TGT---GA-C----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTA---GATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTT-TCATT-TAGTCATC-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCA-AAAGTAGAAACTTTTTCG-TTGTTTTTCAT--TAAAAAAAT--CCAAGTACA-ATAATTT--CAATGTTA-TGTCCAAAATTAAA-AAAAG-----AATT--ACTTCCCG-CAAATAAGATTTGTNATCATTTT----ACAATATAAAAAAGATGTTTTGT-G--T----TTTCTT-CAGTTT-T--AAANAATTCA-CAC-AAAG--GTGATACA-TC-TTTG-TT-CA-NTTGCTC---A---AAA---ACA-TT--GTT--GTTC-AAAATACC-ATN-----T-AAA-TAG-T-TTATAGCTA---AATTC----GATAT---------T--CTT-TTTTCCA-G-----TC---T--TAGTNATT----CTAT---TA-----TTTGT---ATTATAGGTGCA-TCCC-AA-A--TACAGTTCTCTGTTAT--GTTGAATTCTCATTTC-CATCTGTTTT-CAT-TCAAAGG-TTTTGA----AATTTTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTCCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAAGATTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATNTTCTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC-TG--T----CGTC------GAANATA-TCT---TTCGTGTAT-A-AA-----------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACC---ATCGTATTGA-AAAAA---T-TT-G-TCCATATAAATTCACTTAGAAA--ATTCGTCTCTTTTG----------T-AAGTT-AAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT---AAAA--NAG--GAANNTTAAACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACT-CANTGGTCTTAATTAAA----TCAAATACAGAAATG-TATGTTGC-CGTAAAATATCGCTTA-GCGTTC-ATATTGT-TAAACACTTTCT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTTGTA-TTTTTCCCAA-GTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AG--TCT-T-GCGTTTTTACGCCACT-TATGCC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTATCTTCTATTAAAACGTATATCTTNATTAAAATTNTATAT-ATCATAACAATTCA--T-ATATCGCACATGCC-AT--ATATCAATAT-CATATC--AATC--TAT--TATCGAATCATACATGTCAT--A-TTA-----A-ATT--ACA----ATC----TAT-TATTT-TCA-ACATATATATCACACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-A--GAGC--GTTTTC-CTAATC--TTATAATAAATAA-ATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G--C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTA---GATTTNGTT-TTCCGACATTTCTTCCGATCTCATTGNTTNATAATTCCTGCATTTTCATTTTAATCATCTTTATNTATGT-ATAANAAACTCACACGNGATATAAGGACTATT--AGTTATTTCANAAAGTGGNNGCTTTTTCGTTTGNTTTTCNTAANGAAAANATTCCCAAGCACANATAGTTTTCCNATGNTANTGTCCANANTTNNAGAAANGTAGCCAGTTGAACTTCCCGCCNAATAANATNTGTNACNATTTTTGCAGCANCACAAAAAAGATGTTTT-T-G--T----TTTCTT-CANTTT-T--AAACAGTTTA-CGC-AAAG--GTGATACA-TN-TTTG-TT-CA-NTTGCTT---A---AAA---ACA-TT--GT---ATTC-AAAATACC-ATN-----T-AAA-TA--T-TTATAGC-----AATTC----GATAT---------T--CTT-TTTTCCA-G-----TC---T--TAGTNATTG---CTAT---TA-----TTTNT---A-CATAGGTGCA-TTCC-AA-A--TACAA-TCTCTGTTAT--GTTGAATTCTCATTTCGCNTCTATTTT-CATACCAANGGNTTTTGAAATTAATTTTATCNACCANTANACANTGAATAGTAAAANTTGCTTTCNACATCATCTAGCANGAATTTTACAANAT-TGT-TCCTAAACTTCAAAAAAGATNGACANCCTGTTTTATTNTNACATGATTTGCATAGGAACAACCA-AATT-TTT-TGTAGTATNTTCCAACNGCCTTNTTTA--GCGTATAATATTCAC-A--TAANAGAT--TGTTCTTTTTCNAAATCTTGTT-TG-A--AA--AATATAG-----AATATCGTGC-AT--TTCTCC-T---T----CGTC------GAATATA-TCT---TTCGTATAT-A-AA-----------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGTTTTGATT---ATTGTATTGA-AANAA---TTTT-G-TCCANATGAACTNNNTNAGAAAATATTNATCTCTTTTAACGTTTTATATNAAGTTCAAATTTGCTTAATTGTTTAGCGTCTGTNGAANNCNTGAANGNACGTCCCCATTAGAAAA--GAGNCGNGCCTTANACATCTTGGAAAAAATTGGAATCTTAAAAATTTTATNCTCCANNGGTCTTAATCAAAATGTTCAAATACAGAGATGCTATGNTGCGCGTAAAATATCGCTCAGGCGTTCTATATTGTATAAACACTTTCTACATGTTTANCATCTCTACTAATCCCATGA-TGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TNCCAATG-CCCCGCGTTCAA--C----CTTN--CCAATCAA--TGTATTTCTCTTGATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--GCTTTTGAAAAAATT-----ATC--CAGGGTTTTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACGAC-TNTGTA-TTTTTC---A-GTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATNAATTTTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AG--TC--T-GCGTTTTTACGCCACT-TATGCCAAATACGTTTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCA--TTATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATCATTAT--TAT----TCATA-ATGCCAT--A-TTC-----ATATC--ATA----ATCAT--TAT-TATTT------CAT-TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACA--CAACCAGTTTCCACCATTCC-TTATA-TAAA----GTCAT--TTCTATTTTTTGCCCAATATTT-----TGCAT----TATCATAT-TCTCTGGATT----AAGAATTTTCA----TTTTAAG-TTT-------GTATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTTAA-AATTCTTGCATTTTCATTTTAAT-AT--TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG----------TTATTTCA-AAAG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACA-ATAGTTT--CCATGGT-TTATCCACATTTCAAGAAAAGTAGCCAATTTT-CTTCCC-----ATAACATGTGTGACAATTTT-GCAGCAATACAAAAAAGATGTTTTAT-GG-T----TTTCAT-CAACTT-G--CAA--GTTTT-CGC-ATAGTGGAGATACA-TCGTTTG-TT-CC-ATTGCTT---A---ACATTTACA-TT--ATT--GTTC-AAAATACC-ATA-------AAA-TAGTTATTATAGTTA---AATCCCTCTGA-AT---------T--CTT-TTTTCCA-ACATCTTC---T--TAATT-TTGTGACTATATATA-----TTTTTCCAA-TATAGATATA-CCCCTAATA--TACAA-AC------AT---TTG--------TTTC-CATCTGTTTTTCATACCAATGG--TTTGAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTT-AACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT-T---TTTTCCGTTTTTCATAAATATAATCT---TTCATATATAA-AATTCCACTCTGTATTCCAATTTTTCAAACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCT---TTTGTATTGA-AAGAG---TTTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTT-AACGTTTTATATCAAGTT-------GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAA--GAGG-GAGGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCT-CAGAAGTTT---TTAAAATG-TCAAAT--AGAGATGCTATAGTGC-TGTAAAATATCGTTCA-GTGTTC--TATTGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAATGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTA-TTTTTTCTAA-ACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTTTC--T-GAATTTTCACAC------ATG---AATACATTTGGT
gi|10 : AAAAGATTTTTT-T-T--T----CATCTT-CATTTTAT--AAAT--TTTA-CAC-AAAG--GTGATAAA-TT-TTTG-TTCCA-TTTTCTT---ACATAAA---ACA-TTG-GT---ACTC-AACATACC-ATG-----T-AAA-GA--T-TTATAGCTA---AATTCA---GATAT---------T--CTT-TT------G-----TC-------AGTCATT----CTA-----G-----TTTAT---A--AT-GGT----TTCC-AG-A--CACAATTCTCTGTAAT--GTTGAATTTTCATTt
gi|11 : acA-----------ATGCC-----------------G--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA-----ATCATATAGATAAAGA---T--------CATATGAACTCTGTTAAAAA---TTGATCTCTTTT-----------TGAAGTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT----AAA--AAGCCGTACCTTAT-CATCTTAAAAAcaaag
gi|12 : gATAATTCAAAT-ATATCATACATGCC-AT--A----AA-AT-TATA-C--AA------------------ATACATATCA---------------AT----------GTC----TAT--ATTT-TCATACATACATATCATACA------GCGAAAGATCAATAT--CTG-AAT---AT-ATGCT
gi|13 : tgtatattgatattttttttctcttatttaaaagA--T-ATATCACACATGCC-AT--ATATCAA-ATACATATC--AATC--TGTA-TATCATATCATACATGTCATAAA-TTATATT-A-ATT--ATACAATATC----TA--TATTT-TC--ACACA-----CACACA----CA
gi|14 : tttttttgtcccttttttaaaaaattaaa---ACA-TT--ATT--GTTC-AAAATACC-ATTAAGCCT-AAA-TAG-T-TTACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTCtgc
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAA--GGT--TGCCCTTTTTCAAAAGCATGTT-TG-A--Agtacatttaattttcgtgatatactgtatatat
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAATGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--T-ATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATC--TAG--TATTAAATCATACATGTC------TTA-----A-ATT--ACA----ATCTTCTTAT-TATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTT-CAGTAAATAATAT-A---TTCA--CTT--ACCAAT-GTTTGACCCAG--CGCAAGAGTGTGTGTGT---GA-CGCTAAAAAAGCTC--ATA-TGTTAAGA-TTCCG--TCGTA---GATTTTG---TTCTGACATT------GAT-TCATTGATT--TAA--CCTGCG---TCATTATAGTCATC-TTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCA-TTGTGTATCAT--TAAAAAAAT--CCAAGTACAAATAATTT--CAATGTTA-TGTCCAAAATTAAATAAAAG-----AATT--ACTTTCTGCCAAATAAGATTTGTCATCATTT-----ACAATATACAAAAGATGTTTT-TAG--TGTACTTTCTTCCAGTTG-TACAAAAAATTCATCAC-AAAG--GTGATACA-TA-CTTG-TT-CA-TTTGCTCACAA---AAA---ACAGTTAGGTA--ATTCAAAAATACC-ATG-----TCAAATTA--T-TAATAGCG----AATTC----AATAT---------TACCTTGTTTTCCATA-----TC---TAGTAGTGATT-----TAT---TATCTATTTTGT---ATTATAGGTGCA-TCCC-AA-A--TACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACA-----TTT-CAT-TCAAAGGTTTTTGA----AATTTTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT-----AAGAAATTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCC-TGTCT----CGTT------GAAAATA-TCT---TTTGTGTAC-A-AA-----------ATACC-----------------A--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA-----ATTGTATTTA-AAAAAGTGTGTT-GCTCCATAAAAATTCACTTAGAA---ATTCGTCTCTTTTG------------------AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT---AAAACCTAG--GAATATTTAACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATAC-ACATTGGTCTTAATTAAA----TCAAATACAGAAATAGTGTGTTGC-TGTAAAATATCACTTA-GCGTTTTATA-TGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-AT-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTA-TTTTTC---A-GTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AG--TC--TAGCGTTTTTACGCCACT-TATGTCCAATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA----TATGTTGTGCGTAAA-TATCACTTAGGCGT---ATATTGT-TAAAC---TT-----TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATCA-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC-TA-GTA-TTTTTTTCAA-GTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AG--ACT-T-GCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTAA-AATTCAAAT-ATATCACACATACC-AT--ATATCAATA--CATATC--AATC--TATACTATTGAATCATACATGTCAT--AATTATATTTA-ATTGTACA----ATC----TCTATATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-A--GAGC--GTTTTC-CTAATC--TTATAATAAATAA-ATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G--C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTA---GATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATT----------TCATCTTTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT---AAAGTAAAAACTTTTTCA-TTGGTTTTCCTAATAAAAAAAT--CCAAGCACATA-AATTTTCCAA-GTTAATGT-CAAAATTACA-AAATG-----AGTTGAACTTCTCG-CAAAT-AGATTTGTT-TCATTTT----ACATCATAACAAAG-TGTTTTGT-GTCT----TCTCTT-CAGTTT-T---AACAATTCA-CACAAAAG--GTGATACACTC-TTTGTTT-CACATTGTTC---A---AAA---ACA-TT--GTTTAGTTC-CAAATACCGATT-----T-GAT-AA--T-TTATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTCCA-G-----TCATTC--TAGTGA-------TGT---TA-----TTTGT---ATCATA--TGCATTTCC-AA-ATTTACAG-TCTCTGTTAT--GTTAAATTCTCTTTTC-CATCTATTTT-CAT-TCAAAGGGTTTTGA----AATTTTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttttatAAATTTG--CTTTTCAACATTAATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--A-TTTTG--AAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTATTTTTTC---AGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AG--TCTTT-ACATTTTTACGCCACT-TATGCCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-A--------C-T---T----CATC------GAAAATA-TCT---TTTGTGTAT-A-AG-----------ATACT-----------------T--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCTAGATTGTgt
gi|8 : TTTCTTTGAATAT-ATTAGAATAACTACGACCA-AATTGTTC-TATAG-ATTTT--AATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCGTA--T----CATC------AAATATA-TCTTAATTTG-ATAT-ATAA-----------ATTCC-----------------GACTTCT----TCCTTTAAGTT---TTTtgta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222 11 11 2222 1111 111 77777777777777777777777777777777777777 22222 111111 33333333333333333333333333333333 1 1111 33 11 11 1 444444444444 1 5555555555 222222 222222 1 22 333333 1 3333333 111 5555555555 1 1 222222 4444444444 1 1 11 11 22 11 1 1 1 3333333333333 111 222 222222222 11 11 1 1111111 1 1 1111 2 11 333 111 11 11 22222222 11 2222 3333 333333333333 6666666666666666666666 222222222222222 11111 1111 11 11 11 1 1 1 1 2222222222 11 222 11 1 1 222 222 11 11 1 111 111 11 1111 11 22222 444444444444444444444444444444 1 111 1 7777777777777777777777777777777777777 11 1111 111 222222 22 1 66666666666 11 11111 77777777777777 1 33333 11 11 222 333 11 22 1 11 1 22222 33333 11 1 333 1 1 222222222222 1 2222 11 111 11 2222222 111 11 111111 11 111 11 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 11 222 1 2222 1 1111 1 1 1 222 111 1 3333 1
lowQualScore : 1 7 111 1 1 7 6 8 11 5 8 11 6 1111 4444 0 5 222 9999 0 5 77777777777777777777777777777777777777 88 8 0 6 0 3 33333 2 0 222222 22222222222222222222222222222222 6 2 7777 11 11 88 2 666666666666 1 3 7777777777 444444 7 000000 6 3 00 0 888888 3 7 7777777 0 999 5555555555 3 3 222222 7 0000000000 6 3 7 0 3 88 88 6 00 88 7 3 6 3 3 3333333333333 888 7 88 7 333 3 888888888 33 33 0 6 7777777 0 0 1111 0 11 555 444 8 11 11 8 8 99999999 0 6 11 4444 3333 0 444444444444 8 0 5555555555555555555555 1 555555555555555 0 55555 666 3333 33 55 3 33 2 1 3 999 3 3 3 9999999999 7 6 1 00 7 444 55 1 0 0 333 999 00 1 1 6 1 8 0 8 11 0 11 1 0 1 111 66 8 111 6 11 1 44 8 3333 33 55555 555555555555555555555555555555 1 0 777 2 3 0 2222222222222222222222222222222222222 33 7777 3 444 888888 66 4 55 0 3 44444444444 44 99999 33333333333333 2 33333 88 77 1 0 333 222 88 4 22 99 2 1 1 88 1 3 1 6 7 77777 7 11111 44 7 0 3 444 3 3 333333333333 7 3 7777 44 55 444 8 11 6 11 1 8 3 4444444 222 5 11 6 7 2 444444 33 777 33 9 55555 33 3 1 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 33 4 111 2 0 4444 3 1 1 0 3 4444 0 0 0 3 444 111 3 6 2 0 1111 3
lowQualScore : . . ... . . . . . .. . . .. . .... .... . . ... .... . . ...................................... .. . . . . . ..... . . ...... ................................ . . .... .. .. .. . ............ . . .......... ...... . ...... . . .. . ...... . . ....... . ... .......... . . ...... . .......... . . . . . .. .. . .. .. . . . . . ............. ... . .. . ... . ......... .. .. . . ....... . . .... . .. ... ... . .. .. . . ........ . . .. .... .... . ............ . . ...................... . ............... . ..... ... .... .. .. . .. . . . ... . . . .......... . . . .. . ... .. . . . ... ... .. . . . . . . . .. . .. . . . ... .. . ... . .. . .. . .... .. ..... .............................. . . ... . . . ..................................... .. .... . ... ...... .. . .. . . ........... .. ..... .............. . ..... .. .. . . ... ... .. . .. .. . . . .. . . . . . ..... . ..... .. . . . ... . . ............ . . .... .. .. ... . .. . .. . . . ....... ... . .. . . . ...... .. ... .. . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... .. . ... . . .... . . . . . .... . . . . ... ... . . . . .... .
lowQualScore : 0 3 000 0 0 3 7 2 66 0 0 00 0 4444 8888 8 6 666 6666 8 0 88888888888888888888888888888888888888 88 6 8 8 8 8 88888 5 8 222222 66666666666666666666666666666666 7 0 7777 77 00 33 0 777777777777 0 3 7777777777 333333 3 777777 7 3 77 7 333333 3 3 0000000 7 777 7777777777 3 3 333333 3 3333333333 7 3 3 7 3 33 33 7 77 33 0 3 7 3 3 7777777777777 333 3 33 3 333 2 222222222 88 88 0 5 0000000 0 0 2222 0 00 000 000 0 00 00 0 0 88888888 8 4 00 6666 0000 8 000000000000 0 8 2222222222222222222222 0 888888888888888 2 22222 000 8888 88 88 5 88 0 2 3 333 3 3 3 3333333333 3 7 0 33 3 333 77 2 0 0 333 333 33 0 0 0 4 0 8 0 88 6 66 4 6 4 888 66 0 888 4 00 0 44 0 0000 88 00000 000000000000000000000000000000 0 0 555 0 2 0 4444444444444444444444444444444444444 00 0000 2 000 888888 88 2 55 7 3 00000000000 00 77777 00000000000000 0 33333 77 00 0 7 333 333 33 7 00 33 0 0 0 55 0 3 0 7 3 77777 3 33333 00 3 7 3 777 3 3 333333333333 3 3 0000 22 88 222 0 66 4 00 4 0 2 4444444 444 0 00 5 0 5 888888 22 555 88 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 22 0 222 5 0 8888 2 2 0 0 2 8888 0 0 0 2 222 000 2 5 5 0 7777 3
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATAT-CATATC--AATCTATA-TATTANATCATACATGTCAT--A-TTATATT-AAT--T--ACAATC-TCT---ATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CCTGCGC--AANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAANTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCACA-AAA---ACA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTCCA-G-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCA-TCCCAAA--TACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC-TN--T---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT-----TT-A-GTC-AAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT---AAAA---AG--GNANNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTC-TAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATAT-CATATC--AATCTATA-TATTAAATCATACATGTCAT--A-TTATATT-AAT--T--ACAATC-T-T---ATTATTT-TCATACATATATATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAATCAT--TTCAACTTT--ACCCATCGTTT---CCTGCACG-AANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGTCATCTTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCAATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AANAATTCA-CACAAA-GGTGATACA-TC-TTTGTT-CAN-TTGCTCA---AAA---ACA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTCCA-G-----TC---T--TA-----GTNATTCTAT-TAT-----TTGT--ATTATAGGTGCA-TCCCAAA--TACAGTTCTCTGTTATG--TTGAATTCTCATTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTCCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAAGATTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATNTTCTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC-TG--T---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT-----TGTAAGTT-AAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT---AAAA--NAG--GAANNTT-AAACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTCATAT-TGT-TAAACACTTTCT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTTGTATTTTTCCCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCAT-TATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATC-AT--TATTAT-TCATA-ATGCCAT--A-TT-CAT---AT--C--ATAATCAT-T---ATTATTT------CAT-TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACAC--AACCAGTTTCCACCATTCCTTATA-TAAA---GTCAT--TTCTATTTTTTGCCCAATATTT-----TGCAT----TATCATAT-TCTCTGGATT---AAGAATTTTCA----TTTTAAG-TTT--G--T-ATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTT-AAAATTCTTGCATTTTCATT-TTAAT-AT-TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAG--TTTCCATGGTT-TATCCACATTTCAAG-AAAAGTAGCCAATT--TTCTTCCC-----ATAACATGTGTGACAATTTTGCAGCAATACAAAAAAGATGTTTT--ATGGT--TT--TCA--TC-AACTTGC--AAGTTTTCG-CATAGT-GGAGATACA-TCGTTTGTT-CCA-TTGCTTA---ACATTTACA-TT--ATT--GTTCAAAA-TACC-AT-----A--AAATAGTTATTATAGTT---AAATCCCTCTGA-AT---------T--CTT-TTTTCCA-ACATCTTC---T--TAATTTTGTGACTATATATAT-----TTTTCCAATATAGATATA-CCCCTAA--TATA----------------CAAACATTTGTTTC-CATCTGTTTTTCATACCAA-TGGTTT-GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTTA-ACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT-TT--TTTCCGTTTTTCATAAATATAATCT---TTCATATATA-AAATTCCACTCTGTATTCCAATTTTTCAAACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCTTTTGTATTGA-AAGAG-T---TTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTTAACGTTTTATATC-AAGTT-GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAA--GAG--GGAGGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCTC-AGAAGTTT---TTAAAATGT-CAAAT--AGAGAT-GCTATAGTGC-TGTAAAATATCGTTCAG-TGTTC-TAT-TGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAATGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTATTTTTTCTAAACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTT-TCTGAATTTTCACAC------ATG----AATACATTTGGT
gi|10 : AAAAGATTTTTT------T--TTCATCT--TC-A-TTTTA--TAAATTTTA-CACAAA-GGTGATAAA-TT-TTTGTTCCAT-TTTCTTACATAAA---ACA-TT--GGT--ACTCAACA-TACC-AT-----GT-AAAGA-TT--TATAGCT---AAATTCA---GATAT---------T--CTT-TT------G-----TC-------A-----GTCATTCTA---GT-----TTAT--A--AT-GGT----TTCCAGA--CACAATTCTCTGTAATG--TTGAATTTTCATTt
gi|11 : acA------------ATGCC-----------------G--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA--ATCATATAGATAAAGA-T-----------CATATGAACTCTGTTA-AAAAT--TGATCTCTTT-----TTGAAGTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT---AAAA---AGCCGTACCTT--ATCATCTTAAAAAcaaag
gi|12 : gATAATTCAAATATATCATACATGCC-AT--A----AA-AT-TATA-C--AA---ATA-CAT---ATCA---ATGTC-------------------------------T---AT-ATTT-TCATACATACATATCAT--A----CAGCGAAAGATCAATAT--CTG-AAT---AT-ATGCT--
gi|13 : tgtatattgatattttttttctcttatttaaaagAAAAATTAAAATATATCACACATGCC-AT--ATATCAA-ATACATATC--AATCTGTA-TATCATATCATACATGTCATAAA-TTATATT-AATTAT--ACAATA-TCT---A-TATTT-TCACACACACACA-CATGC
gi|14 : tttttttgtccctttttta---ACA-TT--ATT--GTTCAAAA-TACC-ATTAAGCCT-AAATAGTT--TACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTC
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAAGG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--Agtacatttaattttcgtgatatactgtatatat
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAATGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--TATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATCTA-G-TATTAAATCATACATGTC------TTA-----AAT--T--ACAATC-T-TCTTATTATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTTCAGTAAATAA--TATA-TTCA--CTT--ACCAAT-GTTTGACCCAGCGC--AAGAGTGTGTGTGT---GACGCTAAAAAAGCTC--ATA-TGTTAAGATT-CCG--TCGTAG-ATTTTGTT---CTGACATT------GAT-TCATTGATT--TAA--CCTGCGT---CATTAT-AGTCATCTTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAA--TTTCAATGTTA-TGTCCAAAATT-AAATAAAAG-----AATT--A-CTTTCTGCCAAATAAGATTTGTCATCATTT-ACA---ATATACAAAAGATGTTTTTAGTG-TACTT--TCT--TCCAGTTGTACAAAAAATTCATCACAAA-GGTGATACA-TA-CTTGTT-CAT-TTGCTCACAAAAA---ACAGTTAGGTA--ATTCAAAAATACC-AT-----GTCAAATTATT--AATAGC----GAATTC----AATAT---------TACCTTGTTTTCCATA-----TC---TAGTA-----GTGATT-TAT-TATCTATTTTGT--ATTATAGGTGCA-TCCCAAA--TACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACAT-----TT-CATTCAAA-GGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCC-TGTCT---CGTT------GAAAATA-TCT---TTTGTGTACA-AA------------ATACC-----------------A--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA--ATTGTATTTA-AAAAAGTGTGTT--GCTCCATAAAAATTCACTTAG-AAAT--TCGTCTCTTT-----TG-------AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT---AAAACCTAG--GAATATT-TAACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATACAC-ATTGGTCTTAATTAAA---T-CAAATACAGAAATAG-TGTGTTGC-TGTAAAATATCACTTAG-CGTTT-TATATGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-AT-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTATTTTTC---AGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AGTC-T-AGCGTTTTTACGCCACT-TATGTCC-AATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA-----TATGTTGTGCGTAAA-TATCACTTAGGCGT--ATAT-TGT-TAAAC-----TT---TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATCA-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC--TAGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AGAC-T-TGCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTTAT--TAA-AATTCAAATATATCACACATACC-AT--ATATCAATA--CATATC--AATCTATACTATTGAATCATACATGTCAT--AATTATATTTAAT--TGTACAATC-TCT---AT-ATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-AG--AGC--GTTTTC-CTAATC-TTATAATAAATAAATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAG-ATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATTT-CATC-T--------TTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT--AA-AGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACA--TAAATTTTCCAAGTTAATGTC-AAAATT-ACA-AAATG-----AGTTGAA-CTTCTCGC-AAATA-GATTTGTT-TCATTTTACA---TCATAACAAAG-TGTTTT--GTG-T--CT--TCTCTTC-AGTTTTA--A-CAATTCA-CACAAAAGGTGATACACTC-TTTGTTTCACATTGTTCA---AAA---ACA-TT--GTTTAGTTCCAAA-TACCGAT-----TT-GA-TAATT--TATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTCCA-G-----TCATTC--TA-----GTGA---TGT-TAT-----TTGT--ATCATA--TGCATTTCCAAATTTACAG-TCTCTGTTATG--TTAAATTCTCTTTTC-CATCTATTTT-CATTCAAAGGGTTTT-GAAATT----TTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttAAATTTG--CTTTTCAACATTAATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--ATTTT---GAAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTATTTTT-TCAGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AGTCTT-TACATTTTTACGCCACT-TATG-CCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T----------T---CATC------GAAAATA-TCT---TTTGTGTATA-AG------------ATACT-----------------T--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCgt
gi|8 : TTTCTTTGAATATA-TTAGAATAACTACGACCA-AATTGTTC-TATAG---ATTTTAATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCGTA--T---CATC------AAATATA-TCTTAATTTG-ATATATAA------------ATTCC-----------------GACTTCT----TCCTTTAAGTT---TTTtagattgttgta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222 11 1 11 22 111 222 33333333333333333333333 11 11 22222 111111 33333333333333333333333333333333 1 1111 33 11 11 1 555555555 1 5555555555 222222 222222 1 22 333333 1 3333333 111 5555555555 1 1 222222 4444444444 1 1 11 11 22 11 1 1 1 3333333333333 111 222 222222222 11 11 1 11 1 1 1 1111 1 1111 11 11 22222222 11 2222 3333 333333333333 7777777777777777777777777777777 22222222222222 11 1 11 111 11 1 1 1 1 2222222222 222 11 1 1 222 222 11 11 1 111 111 11 1111 11 22222 44444444444444444444444444444 1 111 1 7777777777777777777777777777777777777 11 1111 111 222222 22 1 66666666666 11 11111 888888888888888 1 33333 11 11 2222 222 11 111 11 1 11 1 22222 33333 11 1 11 1 1 111 222 1 2222 11 111 11 2222222 111 11 111111 11 111 11 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 11 1 2222 1 1111 1 1 1 222 111 1 3333 1
lowQualScore : 1 7 111 1 1 7 6 8 99 8 0 0 33 3 77 666 3 000 11 0 66666666666666666666666 8 11 11 88 8 0 6 0 3 33333 2 0 222222 22222222222222222222222222222222 6 2 7777 11 11 88 2 555555555 1 3 7777777777 444444 7 000000 6 3 00 0 888888 3 7 7777777 0 999 2222222222 3 3 222222 7 0000000000 6 3 7 0 3 88 88 6 00 88 3 6 3 3 3333333333333 888 7 88 7 333 3 888888888 33 33 0 6 33 0 0 0 1111 2 0 3 9999 8 8 11 11 8 8 99999999 0 6 11 4444 3333 0 444444444444 8 0 2222222222222222222222222222222 44444444444444 8 11 1 666 66 0 33 222 3 33 4 3 999 3 3 3 9999999999 7 6 1 77 7 444 55 1 0 0 333 555 00 1 1 6 1 8 0 8 11 0 22 1 0 1 111 66 8 111 6 11 1 44 8 3333 33 55555 33333333333333333333333333333 1 0 777 2 3 0 2222222222222222222222222222222222222 33 7777 3 444 888888 66 4 55 0 3 44444444444 44 99999 333333333333333 2 33333 88 77 1 0 8888 333 88 1 555 88 2 1 1 88 1 3 1 6 7 77777 7 11111 44 7 0 3 11 3 3 333 333 7 3 7777 44 55 444 8 11 6 11 1 8 3 4444444 222 5 11 6 7 2 444444 33 777 33 9 55555 33 3 1 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 33 1 3 77 2 0 4444 3 1 1 0 3 4444 0 0 0 3 444 111 3 6 2 0 1111 3
lowQualScore : . . ... . . . . . .. . . . .. . .. ... . ... .. . ....................... . .. .. .. . . . . . ..... . . ...... ................................ . . .... .. .. .. . ......... . . .......... ...... . ...... . . .. . ...... . . ....... . ... .......... . . ...... . .......... . . . . . .. .. . .. .. . . . . ............. ... . .. . ... . ......... .. .. . . .. . . . .... . . . .... . . .. .. . . ........ . . .. .... .... . ............ . . ............................... .............. . .. . ... .. . .. ... . .. . . ... . . . .......... . . . .. . ... .. . . . ... ... .. . . . . . . . .. . .. . . . ... .. . ... . .. . .. . .... .. ..... ............................. . . ... . . . ..................................... .. .... . ... ...... .. . .. . . ........... .. ..... ............... . ..... .. .. . . .... ... .. . ... .. . . . .. . . . . . ..... . ..... .. . . . .. . . ... ... . . .... .. .. ... . .. . .. . . . ....... ... . .. . . . ...... .. ... .. . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... .. . . .. . . .... . . . . . .... . . . . ... ... . . . . .... .
lowQualScore : 0 3 000 0 0 3 7 8 00 8 2 0 88 2 00 222 2 222 88 8 66666666666666666666666 0 00 44 88 6 8 4 8 8 88888 5 8 222222 66666666666666666666666666666666 7 0 3333 77 00 33 0 000000000 0 3 7777777777 333333 3 777777 7 3 77 7 333333 3 3 0000000 7 777 3333333333 3 3 333333 3 3333333333 7 3 3 7 3 33 33 7 77 33 3 7 3 3 7777777777777 333 3 33 3 333 2 222222222 88 88 0 5 88 8 0 0 2222 5 0 2 5555 0 0 00 00 0 0 88888888 8 4 00 6666 0000 8 000000000000 0 8 2222222222222222222222222222222 22222222222222 2 00 2 000 88 0 88 888 5 88 2 3 333 3 3 3 3333333333 3 7 0 77 3 333 77 2 0 0 333 777 33 0 0 0 4 0 8 0 88 6 00 4 6 4 888 66 0 888 4 00 0 44 0 0000 88 00000 00000000000000000000000000000 0 0 555 0 2 0 4444444444444444444444444444444444444 00 0000 2 000 888888 88 2 55 7 3 00000000000 00 77777 333333333333333 0 33333 77 00 0 7 3333 333 33 0 333 33 0 0 0 55 0 3 0 7 3 77777 3 33333 00 3 7 3 00 3 3 000 333 3 3 0000 22 88 222 0 66 4 00 4 0 2 4444444 444 0 00 5 0 5 888888 22 555 88 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 22 0 2 22 5 0 8888 2 2 0 0 2 8888 0 0 0 2 222 000 2 5 5 0 7777 3
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT--AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC-G--CGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-G-TCAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATAT-CATATC--AATCTATA-TATTANATCATACATGTCAT--A---TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CCTG--CGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAANTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-G-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-G-TCAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTCTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCAT-TATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATC-AT--TATTAT-TCATA-ATGCCAT--A---TT-CAT---AT---C--A-TAATCAT--TATTATTT------CAT-TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACAC--AACCAGTTTCCACCATTCCTTATA-TAAA---GTCAT--TTCTATTTTTTGCCCAATATTT---T------GCATTATCATAT-TCTCTGGATT---AAGAATTTTCA----TTTTAAG-TTT--G--T-ATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTT-AAAATTCTTGCATTTTCATT-TTAAT-AT-TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAG--TTTCCATGGTT-TATCCACATTTCAAG-AAAAGTAGCCAATT--TTCTTCCC-----ATAACATGTGTGACAATTTTGCAGCAATACAAAAAAGATGTTTT--ATGGT--TT--TCA--TC-AACTTGC--AAGTTTTCG-CATAGT-GGAGATACA-TCGTTTGTTCCAT-T-GCTTAACA-TTTA-CA-TT--ATT--GTTCAAAA-TACC-AT-----A--AAATAGTTATTATAGTT---AAATCCCTCTGA-AT---------T--CTT-TTTTC-------CA-ACATCTTC---T--TAATTTTGTGACTATATATAT-----TTTTCCAATATAGATATACC-CCTAAT--ATA----------------CAAACATTTGTTTC-CATCTGTTTTTCATACCAA-TGGTTT-GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTTA-ACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT--TTTTTCCGTTTTTCATAAATATAATCT---TTCATATATA-AAATTCCACTCTGTATTCCAATTTTTCAAACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCTTTTGTATTGA-AAGAG-T---TTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTTAACGTTTT--ATA-TCAAGTT-GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAAG---AG--GGA-GGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCTC-AGAAGTTT---TTAAAATGT-CAAAT--AGAGAT-GCTATAGTGC-TGTAAAATATCGTTCAG-TGTTCTAT-TGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAATGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTATTTTTTCTAAACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTT-TCTGAATTTTCACAC------ATG----AATACATTTGGT
gi|10 : AAAAGATTTTTT------T--TTCATCT--TC-A-TTTTA--TAAATTTTA-CACAAA-GGTGATAAA-TT-TTTGTTCCAT-TTTCTTA-CATAAAA-CA-TT--GGT--ACTCAACA-TACC-AT-----GT-AAAGA-TT--TATAGCT---AAATTCA---GATAT---------T--CTT-TT-------------G-----TC-------A-----GTCATT---C-TAG-----TT-T--ATAAT-GGT---TT-CCAGAC--ACAATTCTCTGTAATG--TTGAATTTTCATTt
gi|11 : acA------------ATGCC-----------------G--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA--ATCATATAGATAAAGA-T-----------CATATGAACTCTGTTA-AAAAT--TGATCTCTTT------TTGAA-GTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT----AAAA---AGCCGTA-CCTT--ATCATCTTAAAAAcaaag
gi|12 : gTATATCATACATGCCAT--AAAATTATACA-AATACAT--ATCAATGTC--TAT-ATTT-TCATACATACATATCAT--A----CAGCGAAAGATCAATAT--CTG-AAT---AT-ATGCT--
gi|13 : tgtatattgatattttttttctcttatttaaaagataattcaaaAAAAATTAAAATATATCACACATGCC-AT--ATATCAA-ATACATATC--AATCTGTA-TATCATATCATACATGTCATAAA---TTATATT-AATTA-T--A-CAATATC--TA-TATTT-TCACACACACACA-CATGC
gi|14 : tttttttgtcccttttttaA-CA-TT--ATT--GTTCAAAA-TACC-ATTAAGCCT-AAATAGTT--TACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTCGTACATTTA-A-----TT---T--TC-----GTGATA-TAC-TGT-----ATAT--AT
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAAGG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--A
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAATGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--TATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATCTA-G-TATTAAATCATACATGTC--------TTA-----AAT---T--A-CAATCTTCTTATTATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTTCAGTAAATAA--TATA-TTCA--CTT--ACCAAT-GTTTGACCCAG--CGCAAGAGTGTGTGTGT---GACGCTAAAAAAGCTC--ATA-TGTTAAGATT-CCG--TCGTAG-ATTTTGTT---CTGACATT------GAT-TCATTGATT--TAA--CCTGCGT---CATTAT-AGTCATCTTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAA--TTTCAATGTTA-TGTCCAAAATT-AAATAAAAG-----AATT--A-CTTTCTGCCAAATAAGATTTGTCATCATTT-ACA---ATATACAAAAGATGTTTTTAGTG-TACTT--TCT--TCCAGTTGTACAAAAAATTCATCACAAA-GGTGATACA-TA-CTTGTTC-AT-TTGCTCA-CA-AAAAACAGTTAGGTA--ATTCAAAAATACC-AT-----GTCAAATTATT--AATAGC----GAATTC----AATAT---------TACCTTGTTTTC-------CATA-----TC---TAGTA-----GTGATT-TAT-TATCTATTTTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACAT-----TT-CATTCAAA-GGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCCTGTCT---CGTT------GAAAATA-TCT---TTTGTGTACA-AA------------ATACC-----------------A--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA--ATTGTATTTA-AAAAAGTGTGTT--GCTCCATAAAAATTCACTTAG-AAAT--TCGTCTCTTT------T-----G---AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT----AAAACCTAG--GAATATTT--AACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATACAC-ATTGGTCTTAATTAAA---T-CAAATACAGAAATAG-TGTGTTGC-TGTAAAATATCACTTAG-CGTTTTATATGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-AT-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTATTTTTC---AGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AGTC-T-AGCGTTTTTACGCCACT-TATGTCC-AATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA-----TATGTTGTGCGTAAA-TATCACTTAGGCGT-ATAT-TGT-TAAAC-----TT---TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATCA-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC--TAGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AGAC-T-TGCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTTAT--TAA-AATTCAAATATATCACACATACC-AT--ATATCAATA--CATATC--AATCTATACTATTGAATCATACATGTCAT--AA--TTATATTTAAT---TGTA-CAATCTC--TAT-ATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-AG--AGC--GTTTTC-CTAATC-TTATAATAAATAAATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAG-ATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATTT-CATC-T--------TTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT--AA-AGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACA--TAAATTTTCCAAGTTAATGTC-AAAATT-ACA-AAATG-----AGTTGAA-CTTCTCGC-AAATA-GATTTGTT-TCATTTTACA---TCATAACAAAG-TGTTTT--GTG-T--CT--TCTCTTC-AGTTTTA--ACAA-TTCA-CACAAAAGGTGATACACTC-TTTGTTTCACATTGTTCA----AAAA-CA-TT--GTTTAGTTCCAAA-TACCGAT-----TT-GA-TAATT--TATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTC-------CA-G-----TCATTC--TA-----GTGAT---GT-TAT-----TTGT--ATCATA--TGCATTTCCAAATTTACAGT-CTCTGTTATG--TTAAATTCTCTTTTC-CATCTATTTT-CATTCAAAGGGTTTT-GAAATT----TTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttAAATTTG--CTTTTCAACATTAATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--ATTTT---GAAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTA-TTTTTTCAGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AGTCTT-TACATTTTTACGCCACT-TATG-CCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T---------T---CATC------GAAAATA-TCT---TTTGTGTATA-AG------------ATACT-----------------T--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCgt
gi|8 : TTTCTTTGAATATA-TTAGAATAACTACGACCA-AATTGTTC-TATAG---ATTTTAATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCG-TAT---CATC------AAATATA-TCTTAATTTG-ATATATAA------------ATTCC-----------------GACTTCT----TCCTTTAAGTT---TTTtagattgttgta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222 11 1 11 11 111 222 11111 11 33333333 11 11 22222 111111 33333333333333333333333333333333 1 1111 33 11 11 1 777777777 1 5555555555 222222 222222 1 22 333333 1 3333333 111 5555555555 1 1 222222 4444444444 1 1 11 11 22 11 1 1 1 3333333333333 111 222 222222222 11 11 1 11 1 1 1111 1 1111 11 11 22222222 11 2222 3333 333333333333 8888888888888888888888888888888 22222222222222 11 1 11 111 11 1 1 1 1 2222222222 222 11 1 1 222 222 11 11 1 111 111 11 1111 11 22222 44444444444444444444444444444 1 111 1 7777777777777777777777777777777777777 11 1111 111 222222 22 1 66666666666 11 11111 888888888888888 1 33333 11 11 2222 222 11 111 11 1 11 1 22222 33333 11 1 1 1 111 222 1 2222 11 111 11 2222222 111 11 111111 11 111 11 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 11 1 2222 1 1111 1 1 1 222 111 1 3333 1
lowQualScore : 1 7 111 1 1 7 6 8 99 8 0 0 33 3 99 666 3 000 22 0 55555 0 22 0 55555555 11 11 88 8 0 6 0 3 33333 2 0 222222 22222222222222222222222222222222 6 2 7777 11 11 88 2 111111111 1 3 7777777777 444444 7 000000 6 3 00 0 888888 3 7 7777777 0 999 2222222222 3 3 222222 7 0000000000 6 3 7 0 3 88 88 6 00 88 3 6 3 3 3333333333333 888 7 88 7 333 3 888888888 33 33 0 6 33 3 0 0 1111 2 0 3 9999 8 8 11 11 8 8 99999999 0 6 11 4444 3333 0 444444444444 8 1111111111111111111111111111111 44444444444444 8 11 1 666 66 0 33 222 3 33 4 3 999 3 3 3 9999999999 7 6 1 77 7 444 55 1 0 0 333 555 00 1 1 6 1 8 0 8 11 0 22 1 0 1 111 66 8 111 6 11 1 44 8 3333 33 55555 33333333333333333333333333333 1 0 777 2 3 0 2222222222222222222222222222222222222 33 7777 3 444 888888 66 4 55 0 3 44444444444 44 99999 333333333333333 2 33333 88 77 1 0 8888 333 88 1 555 88 2 1 1 88 1 3 1 6 7 77777 7 11111 44 7 0 3 88 3 3 333 333 7 3 7777 44 55 444 8 11 6 11 1 8 3 4444444 222 5 11 6 7 2 444444 33 777 33 9 55555 33 3 1 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 33 1 3 77 2 0 4444 3 1 1 0 3 4444 0 0 0 3 444 111 3 6 2 0 1111 3
lowQualScore : . . ... . . . . . .. . . . .. . .. ... . ... .. . ..... . .. . ........ .. .. .. . . . . . ..... . . ...... ................................ . . .... .. .. .. . ......... . . .......... ...... . ...... . . .. . ...... . . ....... . ... .......... . . ...... . .......... . . . . . .. .. . .. .. . . . . ............. ... . .. . ... . ......... .. .. . . .. . . . .... . . . .... . . .. .. . . ........ . . .. .... .... . ............ . ............................... .............. . .. . ... .. . .. ... . .. . . ... . . . .......... . . . .. . ... .. . . . ... ... .. . . . . . . . .. . .. . . . ... .. . ... . .. . .. . .... .. ..... ............................. . . ... . . . ..................................... .. .... . ... ...... .. . .. . . ........... .. ..... ............... . ..... .. .. . . .... ... .. . ... .. . . . .. . . . . . ..... . ..... .. . . . .. . . ... ... . . .... .. .. ... . .. . .. . . . ....... ... . .. . . . ...... .. ... .. . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... .. . . .. . . .... . . . . . .... . . . . ... ... . . . . .... .
lowQualScore : 0 3 000 0 0 3 7 8 00 8 2 0 88 2 88 222 2 222 22 8 88888 8 00 8 66666666 00 44 88 6 8 4 8 8 88888 5 8 222222 66666666666666666666666666666666 7 0 3333 77 00 33 0 000000000 0 3 7777777777 333333 3 777777 7 3 77 7 333333 3 3 0000000 7 777 3333333333 3 3 333333 3 3333333333 7 3 3 7 3 33 33 7 77 33 3 7 3 3 7777777777777 333 3 33 3 333 2 222222222 88 88 0 5 88 2 0 0 2222 5 0 2 5555 0 0 00 00 0 0 88888888 8 4 00 6666 0000 8 000000000000 0 2222222222222222222222222222222 22222222222222 2 00 2 000 88 0 88 888 5 88 2 3 333 3 3 3 3333333333 3 7 0 77 3 333 77 2 0 0 333 777 33 0 0 0 4 0 8 0 88 6 00 4 6 4 888 66 0 888 4 00 0 44 0 0000 88 00000 00000000000000000000000000000 0 0 555 0 2 0 4444444444444444444444444444444444444 00 0000 2 000 888888 88 2 55 7 3 00000000000 00 77777 333333333333333 0 33333 77 00 0 7 3333 333 33 0 333 33 0 0 0 55 0 3 0 7 3 77777 3 33333 00 3 7 3 33 3 3 000 333 3 3 0000 22 88 222 0 66 4 00 4 0 2 4444444 444 0 00 5 0 5 888888 22 555 88 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 22 0 2 22 5 0 8888 2 2 0 0 2 8888 0 0 0 2 222 000 2 5 5 0 7777 3
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCAT-TATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATC-AT--TATTAT-TCATA-ATGCCAT-AT--TCATATC-A----------TAATCAT--TATTATTT------CAT-TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACAC--AACCAGTTTCCACCATTCCTTATA-TAAA---GTCAT--TTCTATTTTTTGCCCAATATTT---T------GCATTATCATAT-TCTCTGGATT---AAGAATTTTCA----TTTTAAG-TTT--G--T-ATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTT-AAAATTCTTGCATTTTCATT-TTAAT-AT-TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAG--TTTCCATGGTT-TATCCACATTTCAAG-AAAAGTAGCCAATT--TTCTTCCC-----ATAACATGTGTGACAATTTTGCAGCAATACAAAAAAGATGTTTT--ATGGT--TT--TCA--TC-AACTTGC--AAGTTTTCG-CATAGT-GGAGATACA-TCGTTTGTTCCAT-T-GCTTAACA-TTTA-CA-TT--ATT--GTTCAAAA-TACC-AT-----A--AAATAGTTATTATAGTT---AAATCCCTCTGA-AT---------T--CTT-TTTTC-------CA-ACATCTTC---T--TAATTTTGTGACTATATATAT-----TTTTCCAATATAGATATACC-CCTAAT--ATA----------------CAAACATTTGTTTC-CATCTGTTTTTCATACCAA-TGGTTT-GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTTA-ACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT--TTTTTCCGTTTTTCATAAATATAATCT---TTCATATATA-AAATTCCACTCTGTATTCCAATTTTTCAAACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCTTTTGTATTGA-AAGAG-T---TTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTTAACGTTTT--ATAT-CAAGTT-GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAAG---AG--GGA-GGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCTC-AGAAGTTT---TTAAAATGT-CAAAT--AGAGAT-GCTATAGTGC-TGTAAAATATCGTTCAG-TGTTCTAT-TGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAATGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTATTTTTTCTAAACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTT-TCTGAATTTTCACAC------ATG----AATACATTTGGT
gi|10 : AAAAGATTTTTT------T--TTCATCT--TC-A-TTTTA--TAAATTTTA-CACAAA-GGTGATAAA-TT-TTTGTTCCAT-TTTCTTA-CATAAAA-CA-TT--GGT--ACTCAACA-TACC-AT-----GT-AAAGA-TT--TATAGCT---AAATTCA---GATAT---------T--CTT-TTGTC-------------------------A-----GTCATT---C-TAG-----TT-T--ATAAT-GGT---TT-CCAGAC--ACAATTCTCTGTAATG--TTGAATTTTCATTt
gi|11 : acA------------ATGCC-----------------G--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA--ATCATATAGATAAAGA-T-----------CATATGAACTCTGTTA-AAAAT--TGATCTCTTT------TTGAA-GTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT----AAAA---AGCCGTA-CCTT--ATCATCTTAAAAAcaaag
gi|12 : gTATATCATACATGCCAT-AAAATTATACA-AATACAT--ATCAATGTC--TAT-ATTT-TCATACATACATATCAT--A----CAGCGAAAGATCAATAT--CTG-AAT---AT-ATGCT--
gi|13 : tgtatattgatattttttttctcttatttaaaagataattcaaaAAAAATTAAAATATATCACACATGCC-AT--ATATCAA-ATACATATC--AATCTGTA-TATCATATCATACATGTCATAAA--TTATATT-AATTA-T--A-CAATATC--TA-TATTT-TCACACACACACA-CATGC
gi|14 : tttttttgtcccttttttaA-CA-TT--ATT--GTTCAAAA-TACC-ATTAAGCCT-AAATAGTT--TACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTCGTACATTTA-A-----TT---T--TC-----GTGATA-TAC-TGT-----ATAT--AT
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAAGG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--A
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAATGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--TATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATCTA-G-TATTAAATCATACATGTC-------TTA-----AAT---T--A-CAATCTTCTTATTATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTTCAGTAAATAA--TATA-TTCA--CTT--ACCAAT-GTTTGACCCA--GCGCAAGAGTGTGTGTGT---GACGCTAAAAAAGCTC--ATA-TGTTAAGATT-CCG--TCGTAG-ATTTTGTT---CTGACATT------GAT-TCATTGATT--TAA--CCTGCGT---CATTAT-AGTCATCTTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAA--TTTCAATGTTA-TGTCCAAAATT-AAATAAAAG-----AATT--A-CTTTCTGCCAAATAAGATTTGTCATCATTT-ACA---ATATACAAAAGATGTTTTTAGTG-TACTT--TCT--TCCAGTTGTACAAAAAATTCATCACAAA-GGTGATACA-TA-CTTGTTC-AT-TTGCTCA-CA-AAAAACAGTTAGGTA--ATTCAAAAATACC-AT-----GTCAAATTATT--AATAGC----GAATTC----AATAT---------TACCTTGTTTTC-------CATA-----TC---TAGTA-----GTGATT-TAT-TATCTATTTTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACAT-----TT-CATTCAAA-GGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCCTGTCT---CGTT------GAAAATA-TCT---TTTGTGTACA-AA------------ATACC-----------------A--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA--ATTGTATTTA-AAAAAGTGTGTT--GCTCCATAAAAATTCACTTAG-AAAT--TCGTCTCTTT------T-----G---AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT----AAAACCTAG--GAATATTT--AACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATACAC-ATTGGTCTTAATTAAA---T-CAAATACAGAAATAG-TGTGTTGC-TGTAAAATATCACTTAG-CGTTTTATATGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-AT-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTATTTTTC---AGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AGTC-T-AGCGTTTTTACGCCACT-TATGTCC-AATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA-----TATGTTGTGCGTAAA-TATCACTTAGGCGT-ATAT-TGT-TAAAC-----TT---TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATCA-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC--TAGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AGAC-T-TGCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTTAT--TAA-AATTCAAATATATCACACATACC-AT--ATATCAATA--CATATC--AATCTATACTATTGAATCATACATGTCAT-AA--TTATATTTAAT---TGTA-CAATCTC--TAT-ATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-AG--AGC--GTTTTC-CTAATC-TTATAATAAATAAATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAG-ATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATTT-CATC-T--------TTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT--AA-AGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACA--TAAATTTTCCAAGTTAATGTC-AAAATT-ACA-AAATG-----AGTTGAA-CTTCTCGC-AAATA-GATTTGTT-TCATTTTACA---TCATAACAAAG-TGTTTT--GTG-T--CT--TCTCTTC-AGTTTTA--ACAATT-CA-CACAAAAGGTGATACACTC-TTTGTTTCACATTGTTCA----AAAA-CA-TT--GTTTAGTTCCAAA-TACCGAT-----TT-GA-TAATT--TATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTC-------CA-G-----TCATTC--TA-----GTGAT---GT-TAT-----TTGT--ATCATA--TGCATTTCCAAATTTACAGT-CTCTGTTATG--TTAAATTCTCTTTTC-CATCTATTTT-CATTCAAAGGGTTTT-GAAATT----TTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttAAATTTG--CTTTTCAACATTAATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--ATTTT---GAAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTA-TTTTTTCAGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AGTCTT-TACATTTTTACGCCACT-TATG-CCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T---------T---CATC------GAAAATA-TCT---TTTGTGTATA-AG------------ATACT-----------------T--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCgt
gi|8 : TTTCTTTGAATATA-TTAGAATAACTACGACCA-AATTGTTC-TATAG---ATTTTAATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCG-TAT---CATC------AAATATA-TCTTAATTTG-ATATATAA------------ATTCC-----------------GACTTCT----TCCTTTAAGTT---TTTtagattgttgta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222 11 1 11 11 111 222 11111 11 33333333 11 11 22222 111111 33333333333333333333333333333333 1 1111 33 11 11 1 777777777 1 5555555555 222222 222222 1 22 333333 1 3333333 111 5555555555 1 1 222222 4444444444 1 1 11 11 22 11 1 1 1 3333333333333 111 222 222222222 11 11 1 11 1 1 1111 1 1111 11 11 22222222 11 2222 3333 333333333333 8888888888888888888888888888888 22222222222222 11 1 11 111 11 1 1 1 1 2222222222 222 11 1 1 222 222 11 11 1 111 111 11 1111 11 22222 44444444444444444444444444444 1 111 1 7777777777777777777777777777777777777 11 1111 111 222222 22 1 66666666666 11 11111 888888888888888 1 33333 11 11 2222 222 11 111 11 1 11 1 22222 33333 11 1 1 1 111 222 1 2222 11 111 11 2222222 111 11 111111 11 111 11 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 11 1 2222 1 1111 1 1 1 222 111 1 3333 1
lowQualScore : 1 7 111 1 1 7 6 8 99 8 0 0 33 3 99 666 3 000 22 0 55555 0 22 0 55555555 11 11 88 8 0 6 0 3 33333 2 0 222222 22222222222222222222222222222222 6 2 7777 11 11 88 2 111111111 1 3 7777777777 444444 7 000000 6 3 00 0 888888 3 7 7777777 0 999 2222222222 3 3 222222 7 0000000000 6 3 7 0 3 88 88 6 00 88 3 6 3 3 3333333333333 888 7 88 7 333 3 888888888 33 33 0 6 33 3 0 0 1111 2 0 3 9999 8 8 11 11 8 8 99999999 0 6 11 4444 3333 0 444444444444 8 1111111111111111111111111111111 44444444444444 8 11 1 666 66 0 33 222 3 33 4 3 999 3 3 3 9999999999 7 6 1 77 7 444 55 1 0 0 333 555 00 1 1 6 1 8 0 8 11 0 22 1 0 1 111 66 8 111 6 11 1 44 8 3333 33 55555 33333333333333333333333333333 1 0 777 2 3 0 2222222222222222222222222222222222222 33 7777 3 444 888888 66 4 55 0 3 44444444444 44 99999 333333333333333 2 33333 88 77 1 0 8888 333 88 1 555 88 2 1 1 88 1 3 1 6 7 77777 7 11111 44 7 0 3 88 3 3 333 333 7 3 7777 44 55 444 8 11 6 11 1 8 3 4444444 222 5 11 6 7 2 444444 33 777 33 9 55555 33 3 1 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 33 1 3 77 2 0 4444 3 1 1 0 3 4444 0 0 0 3 444 111 3 6 2 0 1111 3
lowQualScore : . . ... . . . . . .. . . . .. . .. ... . ... .. . ..... . .. . ........ .. .. .. . . . . . ..... . . ...... ................................ . . .... .. .. .. . ......... . . .......... ...... . ...... . . .. . ...... . . ....... . ... .......... . . ...... . .......... . . . . . .. .. . .. .. . . . . ............. ... . .. . ... . ......... .. .. . . .. . . . .... . . . .... . . .. .. . . ........ . . .. .... .... . ............ . ............................... .............. . .. . ... .. . .. ... . .. . . ... . . . .......... . . . .. . ... .. . . . ... ... .. . . . . . . . .. . .. . . . ... .. . ... . .. . .. . .... .. ..... ............................. . . ... . . . ..................................... .. .... . ... ...... .. . .. . . ........... .. ..... ............... . ..... .. .. . . .... ... .. . ... .. . . . .. . . . . . ..... . ..... .. . . . .. . . ... ... . . .... .. .. ... . .. . .. . . . ....... ... . .. . . . ...... .. ... .. . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... .. . . .. . . .... . . . . . .... . . . . ... ... . . . . .... .
lowQualScore : 0 3 000 0 0 3 7 8 00 8 2 0 88 2 88 222 2 222 22 8 88888 8 00 8 66666666 00 44 88 6 8 4 8 8 88888 5 8 222222 66666666666666666666666666666666 7 0 3333 77 00 33 0 000000000 0 3 7777777777 333333 3 777777 7 3 77 7 333333 3 3 0000000 7 777 3333333333 3 3 333333 3 3333333333 7 3 3 7 3 33 33 7 77 33 3 7 3 3 7777777777777 333 3 33 3 333 2 222222222 88 88 0 5 88 2 0 0 2222 5 0 2 5555 0 0 00 00 0 0 88888888 8 4 00 6666 0000 8 000000000000 0 2222222222222222222222222222222 22222222222222 2 00 2 000 88 0 88 888 5 88 2 3 333 3 3 3 3333333333 3 7 0 77 3 333 77 2 0 0 333 777 33 0 0 0 4 0 8 0 88 6 00 4 6 4 888 66 0 888 4 00 0 44 0 0000 88 00000 00000000000000000000000000000 0 0 555 0 2 0 4444444444444444444444444444444444444 00 0000 2 000 888888 88 2 55 7 3 00000000000 00 77777 333333333333333 0 33333 77 00 0 7 3333 333 33 0 333 33 0 0 0 55 0 3 0 7 3 77777 3 33333 00 3 7 3 33 3 3 000 333 3 3 0000 22 88 222 0 66 4 00 4 0 2 4444444 444 0 00 5 0 5 888888 22 555 88 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 22 0 2 22 5 0 8888 2 2 0 0 2 8888 0 0 0 2 222 000 2 5 5 0 7777 3
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCAT-TATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATC-AT--TATTAT-TCATA-ATGCCAT-AT--TCATATC-A----------TAATCAT--TATTATTT------CAT-TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACAC--AACCAGTTTCCACCATTCCTTATA-TAAA---GTCAT--TTCTATTTTTTGCCCAATATTT---T------GCATTATCATAT-TCTCTGGATT---AAGAATTTTCA----TTTTAAG-TTT--G--T-ATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTT-AAAATTCTTGCATTTTCATT-TTAAT-AT-TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAG--TTTCCATGGTT-TATCCACATTTCAAG-AAAAGTAGCCAATT--TTCTTCCC-----ATAACATGTGTGACAATTTTGCAGCAATACAAAAAAGATGTTTT--ATGGT--TT--TCA--TC-AACTTGC--AAGTTTTCG-CATAGT-GGAGATACA-TCGTTTGTTCCAT-T-GCTTAACA-TTTA-CA-TT--ATT--GTTCAAAA-TACC-AT-----A--AAATAGTTATTATAGTT---AAATCCCTCTGA-AT---------T--CTT-TTTTC-------CA-ACATCTTC---T--TAATTTTGTGACTATATATAT-----TTTTCCAATATAGATATACC-CCTAAT--ATA----------------CAAACATTTGTTTC-CATCTGTTTTTCATACCAA-TGGTTT-GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTTA-ACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT--TTTTTCCGTTTTTCATAAATATAATCT---TTCATATATA-AAATTCCACTCTGTATTCCAATTTTTCAAACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCTTTTGTATTGA-AAGAG-T---TTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTTAACGTTTT--ATAT-CAAGTT-GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAAG---AG--GGA-GGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCTC-AGAAGTTT---TTAAAATGT-CAAAT--AGAGAT-GCTATAGTGC-TGTAAAATATCGTTCAG-TGTTCTAT-TGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAATGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTATTTTTTCTAAACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTT-TCTGAATTTTCACAC------ATG----AATACATTTGGT
gi|10 : AAAAGATTTTTT------T--TTCATCT--TC-A-TTTTA--TAAATTTTA-CACAAA-GGTGATAAA-TT-TTTGTTCCAT-TTTCTTA-CATAAAA-CA-TT--GGT--ACTCAACA-TACC-AT-----GT-AAAGA-TT--TATAGCT---AAATTCA---GATAT---------T--CTT-TTGTC-------------------------A-----GTCATT---C-TAG-----TT-T--ATAAT-GGT---TT-CCAGAC--ACAATTCTCTGTAATG--TTGAATTTTCATTt
gi|11 : acA------------ATGCC-----------------G--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA--ATCATATAGATAAAGA-T-----------CATATGAACTCTGTTA-AAAAT--TGATCTCTTT------TTGAA-GTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT----AAAA---AGCCGTA-CCTT--ATCATCTTAAAAAcaaag
gi|12 : gTATATCATACATGCCAT-AAAATTATACA-AATACAT--ATCAATGTC--TAT-ATTT-TCATACATACATATCAT--A----CAGCGAAAGATCAATAT--CTG-AAT---AT-ATGCT--
gi|13 : tgtatattgatattttttttctcttatttaaaagataattcaaaAAAAATTAAAATATATCACACATGCC-AT--ATATCAA-ATACATATC--AATCTGTA-TATCATATCATACATGTCATAAA--TTATATT-AATTA-T--A-CAATATC--TA-TATTT-TCACACACACACA-CATGC
gi|14 : tttttttgtcccttttttaA-CA-TT--ATT--GTTCAAAA-TACC-ATTAAGCCT-AAATAGTT--TACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTCGTACATTTA-A-----TT---T--TC-----GTGATA-TAC-TGT-----ATAT--AT
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAAGG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--A
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAATGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--TATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATCTA-G-TATTAAATCATACATGTC-------TTA-----AAT---T--A-CAATCTTCTTATTATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTTCAGTAAATAA--TATA-TTCA--CTT--ACCAAT-GTTTGACCCA--GCGCAAGAGTGTGTGTGT---GACGCTAAAAAAGCTC--ATA-TGTTAAGATT-CCG--TCGTAG-ATTTTGTT---CTGACATT------GAT-TCATTGATT--TAA--CCTGCGT---CATTAT-AGTCATCTTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAA--TTTCAATGTTA-TGTCCAAAATT-AAATAAAAG-----AATT--A-CTTTCTGCCAAATAAGATTTGTCATCATTT-ACA---ATATACAAAAGATGTTTTTAGTG-TACTT--TCT--TCCAGTTGTACAAAAAATTCATCACAAA-GGTGATACA-TA-CTTGTTC-AT-TTGCTCA-CA-AAAAACAGTTAGGTA--ATTCAAAAATACC-AT-----GTCAAATTATT--AATAGC----GAATTC----AATAT---------TACCTTGTTTTC-------CATA-----TC---TAGTA-----GTGATT-TAT-TATCTATTTTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATGGGTTAAATTCTCATTTCACAT-----TT-CATTCAAA-GGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCCTGTCT---CGTT------GAAAATA-TCT---TTTGTGTACA-AA------------ATACC-----------------A--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA--ATTGTATTTA-AAAAAGTGTGTT--GCTCCATAAAAATTCACTTAG-AAAT--TCGTCTCTTT------T-----G---AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT----AAAACCTAG--GAATATTT--AACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATACAC-ATTGGTCTTAATTAAA---T-CAAATACAGAAATAG-TGTGTTGC-TGTAAAATATCACTTAG-CGTTTTATATGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-AT-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTATTTTTC---AGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AGTC-T-AGCGTTTTTACGCCACT-TATGTCC-AATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA-----TATGTTGTGCGTAAA-TATCACTTAGGCGT-ATAT-TGT-TAAAC-----TT---TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATCA-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC--TAGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AGAC-T-TGCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTTAT--TAA-AATTCAAATATATCACACATACC-AT--ATATCAATA--CATATC--AATCTATACTATTGAATCATACATGTCAT-AA--TTATATTTAAT---TGTA-CAATCTC--TAT-ATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-AG--AGC--GTTTTC-CTAATC-TTATAATAAATAAATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAG-ATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATTT-CATC-T--------TTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT--AA-AGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACA--TAAATTTTCCAAGTTAATGTC-AAAATT-ACA-AAATG-----AGTTGAA-CTTCTCGC-AAATA-GATTTGTT-TCATTTTACA---TCATAACAAAG-TGTTTT--GTG-T--CT--TCTCTTC-AGTTTTA--ACAATT-CA-CACAAAAGGTGATACACTC-TTTGTTTCACATTGTTCA----AAAA-CA-TT--GTTTAGTTCCAAA-TACCGAT-----TT-GA-TAATT--TATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTC-------CA-G-----TCATTC--TA-----GTGAT---GT-TAT-----TTGT--ATCATA--TGCATTTCCAAATTTACAGT-CTCTGTTATG--TTAAATTCTCTTTTC-CATCTATTTT-CATTCAAAGGGTTTT-GAAATT----TTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttAAATTTG--CTTTTCAACATTAATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--ATTTT---GAAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTA-TTTTTTCAGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AGTCTT-TACATTTTTACGCCACT-TATG-CCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T---------T---CATC------GAAAATA-TCT---TTTGTGTATA-AG------------ATACT-----------------T--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCgt
gi|8 : TTTCTTTGAATATA-TTAGAATAACTACGACCA-AATTGTTC-TATAG---ATTTTAATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCG-TAT---CATC------AAATATA-TCTTAATTTG-ATATATAA------------ATTCC-----------------GACTTCT----TCCTTTAAGTT---TTTtagattgttgta
blockSeqs : G A . C C T C A AA C C . T TA CTC T TAC TA AAAA TT ACATAT CT TT CT T T G TAGCC C AATGC ATCATACTCTAAAGAGCGTTTTC C G TAAA CT AC . C GACCCAG G G GACGCTA CAATAC A TCCGCC C . T . C A TATA TT ATAGTCATC . C TCATG T TATCTAAA C T T . AA . G AA AT A C . T AGTTGAA GCC A CA T . A TAGTGTAC CA CT C G CA T T A CTC C A T CAT A G AG TA A G TAAGCCT G . TTAA A CAAGCTATCT G GTACATTTAATTTTC TTATTATCTATT A . A AGG GC T TT ATT A GG A A CTA . G T TTAA T G C TC A AT AG T . . TTC A CT G C A A G G T T TG A T A AA T ATT G . A AG . TG GT TATAC CTTCTTCTCCGTATCATC A . TAA T T T ATTCCGAC T TTTA A . . AG T TC T GTGTGTTGC A TGA TTGAAGTT T AATTG AC A A . CCT CC T TAT . C A T . T C T G T TT A ATAG GC A G TT A . AC . T . AAT T TG A T AA G CT A C C CATAC TAC A . C A C GTC AA GTT . T . AT T A TT C A . G GTTAT T AAACGTATTTGACGATGTGCAT G . T G . CAC TT T T TC G . TT A T A . T TA C A T A A TT T G C A TCC .
blockSeqs : C . T . C AA C . . T CG C T TA TA AAA A TATA . T T C C A C C AACTG TTAAGTATACAAAGGGAGGGC . A TAA A . . . CTTGTA C . GC ATA A CCG C . . . . A TAA . T . . A . ACTATTAG . . T . . . G . . . . . . AATTA GC . T . . A GTGT . . . G . T . . TT C . T CA . . . . . . GTC A . T T TAC . CATATCTAGTA ATACTGT G . T GG GC . . GTT T . A . . . . . TTAT T G A CC A . . T . . . . CC G T A A . . T T TT A T A AA . T G . A AT . A . . ATTTCTCCTGTCTCGTT A . . T T . ATGCCG G . G . . GA T . . T G TCG TG C . C G G . . . A CC . . C . C . T T A . T . . A . . A . T . AA G TT G . AA A . T . C T T C . C A C TAC A . . T . . T T T . A . G TTTT . ATTCGTA . . . G . CC T A T TC G . TG A C T . T T . . . A A T T G C . CCA .
blockSeqs : . . . . . . . C T G AA AA T TGTA . T T T C A . C CTG . T . . . . . . . . TA . . T . . . . . . . GT A . . . T . CAGTCATTCTA TCTAG G . C A . . . GT T . T C . . T A A A . . C T TG A A A TA . T A . A AT . A . . ACTTCATC T . . T . . ATACCA G . G . . GG A . C . G . A A . T . C C A C . . . C TC . . . . . . . A . . . . . TTT . ATGTAT . . . . . C . T . . G . T . A T . T T . . . A . T . . C .
blockSeqs : AA . . TA . T T . T . . . . . . . TT . . . . T . A GTTAT . . . T . . . . A T T . . . T . . T GT . A ATACTT . . G . . . A . . T . . C A C .
blockSeqCons : NA AA*** CGTA**** T* T* TT****** ** T*** **** CATCTTA************************ ATTAT********* ** T* A** AA T** ** AT A*** ATACCG******************************* G* *** G** A* C****** **
originalCons : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT---T--A-CAATCTC--TATTATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-----NT-AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC-------CA-A-----TC---T--TA-----GTGATT-TAT-TAT-----TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AA------------ATNCC-----------------G--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAATGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
finalCons : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTANATCATACATGTCATAA---TTATATT-AATCGTA----CAATCTC--TAT-ATTTT-CATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-ATTT------AAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTCCATCTTA------------------------GTGATATTAT---------TTGT--ATTATAGGTGCATC-CCAAAT--ACAGTTCTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-AT--AAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TGA---AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGTGTATA-AAATACCG-------------------------------CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-GT-CAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCA-TGA--TTCCAATA-CCCCACGTTCAAC------CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111
lowQualScore : 222 11 1 11 11 111 222 11111 11 222 11 22222 111111 33333333333333333333333333333333 1 1111 33 11 11 1 777777777 1 5555555555 222222 222222 1 22 333333 1 3333333 111 5555555555 1 1 222222 4444444444 1 1 11 11 22 11 1 1 1 3333333333333 111 222 222222222 11 11 1 11 1 1 1111 1 1111 11 11 33333333 11 2222 3333 333333333333 8888888888888888888888888888888888888888 1111111111 11 22222 11 1 1 1 1 2222222222 222 11 1 1 222 222 11 11 1 111 111 11 1111 11 22222 44444444444444444444444444444 1 111 99999999999999999999999999999999999 11 11 1111 111 222222 22 1 66666666666 11 11111 888888888888888 1 33333 11 11 2222 222 11 111 11 1 11 1 22222 33333 11 1 1 1 111 222 1 2222 11 111 1 11 2222222 111 11 111111 11 111 11 22222 11 11 1 1 22222222 1 3333333333333333333333333333333333333333333 1 11 1 1 2222 11111 11 1 2222 1 1111 1 1 1 222 111 1 3333 1
lowQualScore : 1 7 111 1 1 7 6 8 99 8 0 0 33 3 99 666 3 000 11 0 55555 0 22 0 555 8 11 8 8 44 6 0 3 33333 2 0 222222 22222222222222222222222222222222 6 2 7777 11 11 88 2 111111111 1 3 7777777777 444444 7 000000 6 3 00 0 888888 3 7 7777777 0 999 2222222222 3 3 222222 7 0000000000 6 3 7 0 3 88 88 6 00 88 3 6 3 3 3333333333333 888 7 88 7 333 3 888888888 33 33 0 6 33 3 0 0 1111 2 0 3 9999 8 8 11 11 8 8 22222222 0 6 11 4444 3333 0 444444444444 8 7777777777777777777777777777777777777777 8 3 4444444444 33 44444 33 3 4 3 999 3 3 3 9999999999 7 6 1 77 7 444 55 1 0 0 333 555 00 1 1 6 1 8 0 8 11 0 22 1 0 1 111 66 8 111 6 11 1 44 8 3333 33 55555 33333333333333333333333333333 1 0 777 2 22222222222222222222222222222222222 8 11 33 7777 3 444 888888 66 4 55 0 3 44444444444 44 99999 333333333333333 2 33333 88 77 1 0 8888 333 88 1 555 88 2 1 1 88 1 3 1 6 7 77777 7 11111 44 7 0 3 88 3 3 333 333 7 3 7777 44 55 444 8 6 8 6 11 1 8 3 4444444 222 5 11 6 7 2 444444 33 777 33 9 55555 33 3 1 33 0 3 0 2 44444444 0 8888888888888888888888888888888888888888888 0 33 0 5 1111 66666 33 1 3 77 2 0 4444 3 1 1 0 3 4444 0 0 0 3 444 111 3 6 2 0 1111 3
lowQualScore : . . ... . . . . . .. . . . .. . .. ... . ... .. . ..... . .. . ... . .. . . .. . . . ..... . . ...... ................................ . . .... .. .. .. . ......... . . .......... ...... . ...... . . .. . ...... . . ....... . ... .......... . . ...... . .......... . . . . . .. .. . .. .. . . . . ............. ... . .. . ... . ......... .. .. . . .. . . . .... . . . .... . . .. .. . . ........ . . .. .... .... . ............ . ........................................ . . .......... .. ..... .. . . . ... . . . .......... . . . .. . ... .. . . . ... ... .. . . . . . . . .. . .. . . . ... .. . ... . .. . .. . .... .. ..... ............................. . . ... . ................................... . .. .. .... . ... ...... .. . .. . . ........... .. ..... ............... . ..... .. .. . . .... ... .. . ... .. . . . .. . . . . . ..... . ..... .. . . . .. . . ... ... . . .... .. .. ... . . . . .. . . . ....... ... . .. . . . ...... .. ... .. . ..... .. . . .. . . . . ........ . ........................................... . .. . . .... ..... .. . . .. . . .... . . . . . .... . . . . ... ... . . . . .... .
lowQualScore : 0 3 000 0 0 3 7 8 00 8 2 0 88 2 88 222 2 222 88 8 88888 8 00 8 888 0 00 0 0 66 4 8 8 88888 5 8 222222 66666666666666666666666666666666 7 0 3333 77 00 33 0 000000000 0 3 7777777777 333333 3 777777 7 3 77 7 333333 3 3 0000000 7 777 3333333333 3 3 333333 3 3333333333 7 3 3 7 3 33 33 7 77 33 3 7 3 3 7777777777777 333 3 33 3 333 2 222222222 88 88 0 5 88 2 0 0 2222 5 0 2 5555 0 0 00 00 0 0 88888888 8 4 00 6666 0000 8 000000000000 0 2222222222222222222222222222222222222222 0 8 1111111111 88 55555 88 2 2 3 333 3 3 3 3333333333 3 7 0 77 3 333 77 2 0 0 333 777 33 0 0 0 4 0 8 0 88 6 00 4 6 4 888 66 0 888 4 00 0 44 0 0000 88 00000 00000000000000000000000000000 0 0 555 0 55555555555555555555555555555555555 0 00 00 0000 2 000 888888 88 2 55 7 3 00000000000 00 77777 333333333333333 0 33333 77 00 0 7 3333 333 33 0 333 33 0 0 0 55 0 3 0 7 3 77777 3 33333 00 3 7 3 33 3 3 000 333 3 3 0000 22 88 222 0 0 0 4 00 4 0 2 4444444 444 0 00 5 0 5 888888 22 555 88 2 00000 88 2 0 22 0 2 0 5 22222222 0 0000000000000000000000000000000000000000000 0 88 0 0 2222 22222 22 0 2 22 5 0 8888 2 2 0 0 2 8888 0 0 0 2 222 000 2 5 5 0 7777 3
consensus : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTATATCATACATGTCAT-AA--TTATATT-AAT-TATA-CAATCTC--TAT-ATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-T-----TAAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC---C-----A----T--CT--TAGTGAT--ATTAT-----TTGT-ATTATAGGTGCATT-CCAAAT--ACAGTT----CTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGT-----------------GTAT-----------A-AA-ATACCG--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-G-TCAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATCAA-TGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
Reference ( family-2373 ) : NGTTTTTTTTNTCTTTTATTAAAACGTATATCTTNATTAAAATTNCATATTATCATAACAATTCAAATATATCACACATGCC-AT--ATATCAATATGCATATC--AATCTATA-TATTANATCATACATGTCAT-AA--TTATATT-AAT-CGTA-CAATCTC--TAT-ATTT-TCATACATATACATCATACA----CAGCGAAAATTCAATATAACTG-AGT---ATCATACT--AA-AG--AGC--GTTTCC-CTAATCCTTATAGTAAATAAGTCAT--TTCAACTTT--ACCCATCGTTT---CC---GCGCAANAGCGTGT-TGT---GAC----AAAAAGCTTCAATA-TTTTAAGATTTCCG--TCGTAG-ATTTGGTT-TTCCGACATT------GAT-TCATTGATT-ATAA--CCTGCGTTT-CATT-T-AGT-AT-TTATAT-TGT-ATAATAAA-TCACGCGTAATATAAGG--TATC--AGTTATTTCAAA-AGTAGAAACTTTTTCGTT-GTTTTTCAT--TAAAAAAAT--CCAAGTACAA-TAA--TTTCCATGTTA-TGTCCAAAATT-AAA-AAAAG-----AATT--A-CTTCCCGC-AAATAAGATTTGTNATCATTTTACA---ATATAAAAAAGATGTTTT--GTG-T--TT--TCT--TC-AGTTTTA--AAAATTTCA-CACAAA-GGTGATACA-TC-TTTGTTCCAT-TTGCTCA-CA-AAAA-CA-TT--GTT--GTTCAAAA-TACC-AT-T-----TAAATAGTT--TATAGCT---AAATTC----GATAT---------T--CTT-TTTTC---C-----A----T--CT--TAGTGAT--ATTAT-----TTGT-ATTATAGGTGCATC-CCAAAT--ACAGTT----CTCTGTTATG--TTAAATTCTCGTTTC-CATCTGTTTT-CATTCAAA-GGTTTT-GAAATT----TTAT-AATCAATAAATAATGAATANTAAAAATTGCTTTNCACATCATCTA-CATGGATTTTACAATAT-TGT-TTTTAAAT---AAAAAA--TTAACATCCTGTTTTATTNTNACATAATTTGCATAGGAACAATCA-AATT-TTT-TGTAGTATGTTTTAATAGCCTTTTTTA--GCATATAATATTCAC-A--TAAGAGAT--TGTTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTGC-AT--TTCTCC--TNT---CGTC------GAANATA-TCT---TTCGT-----------------GTAT-----------A-AA-ATACCG--CTCTG-TATCC----AGTT---TTTAAAACAA------AAGGGCTTCGACCATCGTATTGA-AAAAA-T---TT--G-TCCATATAAATTCACTTAGAAAAT--TCGTCTCTTT------TT--A-G-TCAAATTCGCTT-----TTTAGCATCTATTGAATGCG-GAAAGNACGTTCCCAT----AAAA---AG--GNA-NNTT--AACATCTTNAAAAANATTGGAATCTTAGNGATTTTATACTC-ANTGGTCTTAATTAAA---T-CAAATACAGAAAT-G-TATGTTGC-CGTAAAATATCGCTTAG-CGTTNTAT-TGT-TAAACACTTTTT---TGTTTATTAT-TCTACTAAT-CCATGA-CGCTTTGGCGGCATAAAATTTG--CTTT-CAACATC-A-TGA--TTCCAATA-CCCCACGTTCAA--C----CTTT--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT-AAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATC--CAGGGTTNTG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--CGT--------------A-------------------TTTTCC-AA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAAC-TTNGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGTAACATTAANTCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACG--AGTC-T-TGCGTTTTTACGCCACT-TATG-CC-AATACG-TTGGT
gi|1 : GTTTTTTTTATCTTTTATTAAAATGTATATCTTAATTAAAATTGTATAT-ATCATAACAATTCAT-TATATGTCATATCTC-ATTCATATCTATAT-CATAC----ATC-AT--TATTAT-TCATA-ATGCCAT-AT--TCATATC-A--------TAATCAT--TAT-TATT-TCAT-----TA-ATCACATA----CAT------TTCAATTTAAC---AAT----TCA-ATT--AACAC--AACCAGTTTCCACCATTCCTTATA-TAAA---GTCAT--TTCTATTTTTTGCCCAATATTT---T------GCATTATCATAT-TCTCTGGATT---AAGAATTTTCA----TTTTAAG-TTT--G--T-ATAGGAGTTGCTTGTTCCAACATTTCTTCCGAT-TC-TTGCTT-AAAATTCTTGCATTTTCATT-TTAAT-AT-TTATATATAT-ATAAAAAACTCACAAAGGATATAAGG--T--------TATTTCAAA-AG-GGTTGTTTTTTCGTTTATTTTTCAT--GGAAAATATTCCCAA-TACAA-TAG--TTTCCATGGTT-TATCCACATTTCAAG-AAAAGTAGCCAATT--TTCTTCCC-----ATAACATGTGTGACAATTTTGCAGCAATACAAAAAAGATGTTTT--ATGGT--TT--TCA--TC-AACTTGC--AAGTTTTCG-CATAGT-GGAGATACA-TCGTTTGTTCCAT-T-GCTTAACA-TTTA-CA-TT--ATT--GTTCAAAA-TACC-AT-A------AAATAGTTATTATAGTT---AAATCCCTCTGA-AT---------T--CTT-TTTTC---C-----AACA-T--CT--TCTTAAT------T-----TTGTGACTATATATATTTT-TCCAAT--ATAGATATACCCCTAATATA--C-AAACATTTGTTTC-CATCTGTTTTTCATACCAA-TGGTTT-GAAATTAATTTTATCAACCAA-ACACAAT---TAGTAAAATTTACTTTA-ACATC-TCTAGCATGAATTTTACAAAACATGTGTCCTAAAC---AAAAAAGATAAACAG---GTTTTATTTTGATATATTTTGAATAACTACAATCA-AATT-TTTGTTTAG-AGATTTTAATTGGCTTATTTAAAGCATATA-TATTCAC-A---AAGAAATGTTATTTTCTTTCCAA--TTTGTTCTG-ATGAA--GATGTAG-----TATATCATGTTAT--TTTTCT--TTTTTCCGTTTTTCATAAATATAATCT---TTCATATATAAAATTCCACTCTGTATTCCAATTTTTCA-AACATAGTG--TTTTGATATTC----A-TTACGTTTGAAACAATGTATTAA---CTTCGCCTTTTGTATTGA-AAGAG-T---TTTTG-TCCAAATAAATTGACTAAGAAAATATTC-TCTCTTTAACGTTTT--ATA-TCAAGTT-GCTT-----TTTGG-ATCTATAAAAAGCTTGAAAATATATTCCCATTAGAAAAG---AG--GGA-GGTTTAAACATTTTGGAAAAAATTGGAATCTTAAAAATTTTATTCTC-AGAAGTTT---TTAAAATGT-CAAAT--AGAGAT-GCTATAGTGC-TGTAAAATATCGTTCAG-TGTTCTAT-TGTATAAACACTTTCTACATG-TTAGTATCTCTACT--TCCCATGATTGCTTTGGCGGCATTAAATTTGCTCTTT-CAATATCAA-TGA--TACCAATG-CCCCGTGCTCAAATT----TTTT--CCAAT-AAGTTGTATTTCGTCTGAT--T-T-CGGTCTTCGTTTTCAAATAAAGTT-ATATATTAG---TTTTGAGACCAGCCTTGGAAAAAATTCTTGGCTT--TAGGGTTTTC-TAAAATA-AAAGCATTACTATAGTA-TC-TCCGGGAGA-TTGCC--AG-TGT--------------AATTGAATTTATTGTGCAATTTTTCC-AAACTATTGTAAA-GTTTT-TCCCATTTTTC-CAAACAAC-TCAGTATTTTTTCTAAACTTTTCTA-CTTGCTCTGTCCAAATT-CTTTTCATAGCATTCAATTTATTTATGCCC-ACAGGT-AAATA-C-CAAGTGA-TTT-TACGGCAGTT-TCTGAATTTTCACAC------ATG----AATACATTTGGT
gi|10 : AAAAGATTTTTT------T--TTCATCT--TC-A-TTTTA--TAAATTTTA-CACAAA-GGTGATAAA-TT-TTTGTTCCAT-TTTCTTA-CATAAAA-CA-TT--GGT--ACTCAACA-TACC-AT-G-----TAAAGA-TT--TATAGCT---AAATTCA---GATAT---------T--CTT-TTGTC----------------------AGTCAT--TCTAG-----TT-T-ATAAT-GGT---TT-CCAGAC--ACAATT----CTCTGTAATG--TTGAATTTTCATTt
gi|11 : acA-ATGCCG--CTCTT-TATCC----TATT---TTCAAAACAA------ACAGGTTTTGA--ATCATATAGATAAAGA-T-----------CATATGAACTCTGTTA-AAAAT--TGATCTCTTT------TTGAA-GTTCAAATTTGTTTAATTGTTTAACGTTTGTTGAATTCA-AAATGAACGTCCCCAT----AAAA---AGCCGTA-CCTT--ATCATCTTAAAAAcaaag
gi|12 : gTATATCATACATGCCAT-AAAATTATACA-AATACATATCAATGTC--TAT-ATTT-TCATACATACATATCAT--A----CAGCGAAAGATCAATAT--CTG-AAT---AT-ATGCT--
gi|13 : tgtatattgatattttttttctcttatttaaaagataattcaaaAAAAATTAAAATATATCACACATGCC-AT--ATATCAA-ATACATATC--AATCTGTA-TATCATATCATACATGTCATAAA--TTATATT-AAT-TATA-CAATATC--TAT-ATTT-TCACACACACACA-CATGC
gi|14 : tttttttgtcccttttttaA-CA-TT--ATT--GTTCAAAA-TACC-AT-TAAGCCTAAATAGTT--TACAGTTTAAAAATTCT---GATAT---------T--CTT-TTTTCGTACATTTAA----T--TT--TCGTGAT--A-TA------CTGT-A-TATA
gi|16 : ATTTGCAAAGGAACAACCAGAAGT-CT---GTTGTATGTTCTAACAGCCTTTTTT--------------TCAT-A--TAAGG--T--TGCCCTTTTTCAAAAGCATGTT-TG-A--At
gi|18 : GA-TGCTTTGGCGGCATAAAATTTA--CTTT-CATTATCAA-TGA--TACCAATG-C----CGCTCAA--T----TTTT--CCAATAAG--TGTATTTC
gi|2 : GTTTTTTTTGTCTTCT-------CGTAT---TTCATTAAAATTCCATATTATCACCACAAGCCA--TATAT-ACACATGCCCAT--AAGTCAATACGCATATCTCAATCTA-G-TATTAAATCATACATGTC-------TTA-----AAT---TA-CAATCTTCTTATTATTTCTCA-ACATATACATCATACATAGCCAGCGAAAATTCAATATAA-TGCAGTTTAAGTATAC---AA-AGGGAGG--G----C-CTTATCCGTTCAGTAAATAA--TATA-TTCA--CTT--ACCAAT-GTTTGACCCA--GCGCAAGAGTGTGTGTGT---GACGCTAAAAAAGCTC--ATA-TGTTAAGATT-CCG--TCGTAG-ATTTTGTT---CTGACATT------GAT-TCATTGATT--TAA--CCTGCGT---CATTAT-AGTCATCTTATAT-TGTCATAATAAA-TCATGCGTAATATAAGG--TATCTAAATTATTACATATAGTAGAAACTTTTTCATT-GTGTATCAT--TAAAAAAAT--CCAAGTACAAATAA--TTTCAATGTTA-TGTCCAAAATT-AAATAAAAG-----AATT--A-CTTTCTGCCAAATAAGATTTGTCATCATTT-ACA---ATATACAAAAGATGTTTTTAGTG-TACTT--TCT--TCCAGTTGTACAAAAAATTCATCACAAA-GGTGATACA-TA-CTTGTTC-AT-TTGCTCA-CA-AAAAACAGTTAGGTA--ATTCAAAAATACC-ATGT-----CAAATTATT--AATAGC----GAATTC----AATAT---------TACCTTGTTTTC---C-----A----TATCTAGTAGTGATTTATTATCTATTTTGT-ATTATAGGTGCATC-CCAAAT--ACAGTT----CTCTGTTATGGGTTAAATTCTCATTTCACAT-----TT-CATTCAAA-GGTTTTTGAAATT----TTA--AATCAATAAATAATGAATACTAAAAATTGCTTTTCACATCATCTA-TAT--ATTTTACAATAT-TGT-TTTTGAAT---AAGAAA--TTAACATCTTGTTTTATTGTCACATAATTTGCATAGGAACAATCA-AACT-TTT-TGTAGTATTCTCTAATAGCCGTTTTTA--GCATATAATATTCAC-A--TAATAGAT--TGCTCTTTTTCAAAATCTTGTT-TG-A--AA--AATATGG-----AATGTCGTAC-AT--TTCTCCTGTCT---CGTT------GAAAATA-TCT---TTTGT-----------------GTAC-----------A-AA-ATACCA--CTCTG-TATCC----AGTT---TTTAAAACAT------AAGAGCTTTGA--ATTGTATTTA-AAAAAGTGTGTT--GCTCCATAAAAATTCACTTAG-AAAT--TCGTCTCTTT------T-----G---AAATTCGCTT-----TTTA-CATCTATTGAATGCG-GAAAGGACATTTCCAT----AAAACCTAG--GAATATTT--AACAT-TTCAAAAATATTGGA--TTTAGTGCATTTATACAC-ATTGGTCTTAATTAAA---T-CAAATACAGAAATAG-TGTGTTGC-TGTAAAATATCACTTAG-CGTTTTATATGT-TAA--ACTTTTT---TGTTTATTAT-TCTGCTAAT-CCATGA-GGCTTTTATAGCATAAAATTTG--CTTT-CAACATT-A-T-A--TTTCAATACCCCCACATTCAA--C----CTTA--CCAATCAA--TGTATTTCTCTTAATCCT-T-C--TCTTTTTTTCCAAATAAAGTT--AATATAAG---TTTTGAAAC--ATTTTTGAAAAAGTT-----ATC--CAGGGTTATG-TAATATT-GAAGCATTA-TATAGTA-TT-T---AGAAA-TTGCT--A--TGT--------------A-------------------TTTTCCGAA--CATCGTCAG-ATTTCGTC----TTTTC-C--ACAACTTTTGTATTTTTC---AGTTTTTCAAGTTTGCT-TAACCAA--T-TTTCTCGT-ACATTAAATCTA-TCATGCCCTACA--T-AGATA-C-CAAGGGA-TTTATACA--AGTC-T-AGCGTTTTTACGCCACT-TATGTCC-AATACG-TTGGTgttt
gi|3 : gATTTTATACTCCACTG-TCTTAATCAAA---TTCAAATACAGAA-----TATGTTGTGCGTAAA-TATCACTTAGGCGT-ATAT-TGT-TAAAC-----TT---TGTTTATCAT-TCTACTAA--CCATAG-CGTTT--ACAGCATAAAATTT----CTT-CAACATC-A-TAACTTTCCAATA-CCCCACGTTCAA--C----CCTTACCCAATCAA--TGTATTTCTCTT-ATCCTGT-C--TCTTTTTTTCCAAATAAAGTTAAAATATAAG---TTTTGAAAC--ATTTTTGAAAAAATT-----ATCATCTGGATTTTGTTAATATT-GAAGCATTA-TATA-TATTT-T---AGAAATTTGCTAAA--CGTATTTGACGATGTGCA-------------------TTTCCC-AA--CATCGTCAG-ATTTC-TC----TTTCCAC--ACGAC--TAGTATTTTTTTCAAGTTTTTCAAGTTTGCT-TAACCAAT-T-TTTCTCGTAACATCAATCTTA-TCATGCCCTACA--TAAGATACC-CAAGGGATTTTATACA--AGAC-T-TGCG-ATTTAC-CCACTATAT
gi|4 : TTTTTTTTCTCTTTTATTAAAAatattgttcattggcgtatgttatttacaaacgaacctgttaataaacattctgatttttctaaattaagtttagtcctcgcaaacttccgcgaaaatgctgaaattgtttttcctcaatgtttgccaaagagtttgcatcttgtaacaagtttcgtgcatcgttgcggagaacaatctttattactatcatgttatctatttttctgaaatgatagcccctctatctcattgttcttttttatctgaatactaaatttcttaaaacaaaatatgaacaataatgctgacgacagggacatccttgtcggattccctttgcatgacaaggtttaaaatccatccatatttctattttaaatataggcttatttgtaaaaggtgtttttatcatttgctatgaatgtggtccaaagtaaatttggtctttaaagttttcaacataaaatgtattcaactgaatcgaagctttttcaaaatcgaagaagagtaatattccagtctaaactttttgtgaatagtaatcgacaatattccaaaattaacgagcgttttgc
gi|4 : tgtatTTAT--TAA-AATTCAAATATATCACACATACC-AT--ATATCAATA--CATATC--AATCTATACTATTGAATCATACATGTCAT-AA--TTATATTTAAT-TGTA-CAATCTC--TAT-ATTT-TCATACATATATATCATACA------GCGAAAATTCAATATAACTG-AGT---ATCATACTCTAA-AG--AGC--GTTTTC-CTAATC-TTATAATAAATAAATCATCTTTCAACTTT--ACCCATCGTTT---CTTGTACGGAACAGCGTGT-TGT---G-C----AAAAAGCTTCAATACTTTTAAGATTTCCGCCTCGTAG-ATTTGGTT-TTCTGACATT------GATCTCATTAATTTATA---CCTGCATTT-CATC-T--------TTATCT-TGT-ATAATAAA-----ACGTAATA-AAGGACTATT--AGTTATTT--AA-AGTAAAAACTTTTTCATT-GGTTTTCCTAATAAAAAAAT--CCAAGCACA--TAAATTTTCCAAGTTAATGTC-AAAATT-ACA-AAATG-----AGTTGAA-CTTCTCGC-AAATA-GATTTGTT-TCATTTTACA---TCATAACAAAG-TGTTTT--GTG-T--CT--TCTCTTC-AGTTTTA--ACAATT-CA-CACAAAAGGTGATACACTC-TTTGTTTCACATTGTTCA----AAAA-CA-TT--GTTTAGTTCCAAA-TACCGAT-T-----TGA-TAATT--TATAGC-----AATT-----GATATCAAGCTATCT--CTT-TTTTC---C-----AGTCAT--TC--TAGTGAT--GTTAT-----TTGT-ATCATA--TGCATTTCCAAATTTACAGT-----CTCTGTTATG--TTAAATTCTCTTTTC-CATCTATTTT-CATTCAAAGGGTTTT-GAAATT----TTAT--ATCATTAAATATTGAATAATAAAAATTGCTTTCCACATCATTT---ATAGATTTTACAATAT-TGT-ttcaaatatatcacacataccatatatcaatacatatcaatctatactattgaatcatacatgtcataattatatttaattgtacaatctctatattttcatacatatatatcatacagcgaaaattcaatataactgagtatcatactctaaagagcgttttcctaatcttataataaataaatcatctttcaactttacccatcgtttcttgtacggaacagcgtgttgtgcaaaaagcttcaatacttttaagatttccgcctcgtagatttggttttctgacattgatctcattaatttatacctgcatttcatctttatcttgtataataaaacgtaataaaggactattagttatttaaagtaaaaactttttcattggttttcctaataaaaaaatccaagcacataaattttccaagttaatgtcaaaattacaaaatgagttgaacttctcgcaaatagatttgtttcattttacatcataacaaagtgttttgtgtcttctcttcagttttaacaattcacacaaaaggtgatacactctttgtttcacattgttcaaaaacattgtttagttccaaataccgatttgataatttatagcaattgatatcaagctatctcttttttccagtcattctagtgatgttatttgtatcatatgcatttccaaatttacagtctctgttatgttaaattctcttttccatctattttcattcaaagggttttgaaattttatatcattaaatattgaataataaaaattgctttccacatcatttatagattttacaatattgt
gi|5 : tgtatttttttttctcttAAATTTG--CTTTTCAACATT-AATAA--TTC-AATA-CCCCA-ATTCAA--CATACCTTA--CCAATCAA--TGTATTTCT-TTAATCCC-TAC--TCTTTTTTTCCAAATAAAGTT-AAATATAAAGTTTTTTGAAAC--ATTTT---GAAAATT-----ATC--CAGGG-TATG--AATATTCGAAGC-TTA-TATAGTAGTTAT---AGAAA-TTGCT--ATTCGT--------------A--------------------TTTCC-AA--CATCGTCAGTATTTCGTC----TTTT--C--ACATC-TTTGTA-TTTTTTCAGGTTTTTCAAGTTTGCT-TAACCAA--TGTTTCTCGTAACATAAATTCAA-TCATGCCCTACA--T-AGATA-CACAAGGAG-TTTATAC---AGTCTT-TACATTTTTACGCCACT-TATG-CCAAATACG-TTGGT
gi|7 : ATAACAT-TAT-TTTTAAATTTCAAAAA----TGACATCCTGTTTTATTGTTACATGATTTGCATAGGAACAATTA-A-TT-TTT-TGTAGTATGCTTCAACAGCCGTATTTA--GCGCATAATATTCAC-A--TAAAAGAT--TGTTCTTTTTCAATATCTTGTT-TG-A--AA--AATATGT-----AATGTTGTAC-AC--T---------T---CATC------GAAAATA-TCT---TTTGT-----------------GTAT-----------A-AG-ATACTT--CTCTG-CATCC----AGTT---TTTAAAACAA------AAGGGCTTAGATCgt
gi|8 : TTTCTTTGAATATA-TTAGAATAACTACGACCA-AATTGTTC-TATAG---ATTTTAATTGCTTTTTTAA--GCATATTATATTCACTAATTAAGAAGT--TATTTTTTTTCTCAGTTTTGTC-TGTG--AAGTAATATAGTATACAATATCATGC-CTTCTTCTCCG-TAT---CATC------AAATATA-TCTTAATTTG------------------ATAT-----------ATAA-ATTCCGACTTCT----TCCTTTAAGTT---TTTtagattgttgta
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): TCTTAGCGATTTTCACGTTATTTGTGTATTGATCATTGGCGTATATATTTACAAACGAACCTGTTAATAAACATTCTGGGTTTTTTTCTAAATTAAGTTTAAGTCCTGCAAGTTTCGAAAATGCTAAAACTGTTTTTAATATTTTTGGCAAAGAGAATGTATCTTGTAACTGGTTCGTGCAGTCGTCTGCCTGTTGAACAATATTTATACTATAATTGTTAGATTCTTATTTGTCTGAAATGATAACCCTTTGATCTCGTTGTCGTTTTTAAA
Unaligned ( gi|9 ): AAAAAGTAGTATTTATTATATTGTTATGAATGTTGGATACTAAGTTGTAAGATTTTTAAAGTTTTTAAACATTAATGATTTTTATTCAACTGATCGAAGGTTTTCATAAGTCAAGAGTAAGAGTAATCAGTTTCCAGCTTTAAATCTTTTGTGAATAGTATATCGAGATAATCCACGATATATTTAAGCGAGACGGCGTTTT
Unaligned ( gi|15 ): CGAGGCTTTTCAAAATCAAGGAAGAGTAATATTCCATCTAAATATTTTTGTGATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTAC
Unaligned ( gi|17 ): ATAGGCTTATTGTAAGTGTTTTTATCATTGCTATGAATTTTGTCAAAGTTTTTTTTCTAAGTTTAAACATAAAATTATATT
Unaligned ( gi|19 ): GGTCCCGCAACTTCCGAAAATGCTGAAATTATTTTCAATATTTTTG
Unaligned ( gi|20 ): GAATAGTAATCGAAGATATCCAGAATTAATTGAGCGTTTTCA