lowQualScore : 11111111111111111111111111111111111
lowQualScore : 1111111 33 11111 22222 11 11 22 11 222 11 222 22222222222 22222222 111 1 11 1 1 11 33333333 1 11111111111 11111 111 22222 3333 55555555555555555555555555555555555 6666666666666666 2222 1 11 333333 22222222 11111111 111 11 333333333333 11 1 1 22 11111 2222 11 1 111 22 1111 222 22 11111 22222 11 111 1 11 1 1 3 333333 1 1 2222 1 1 1 11 1 1 1 11 11 11 11 11 33 111 1 1 1 1 3 1 11111 1 1 2 3333 1 333333 1 1 66666666666666666666666 1 1 222 555555555555555555 2 111 222 1 333
lowQualScore : 6666666 5 0 22 5 4 66 11111 3 88888 4 4 4 777 4 4 4 4 1 4 55 55 00 4 1 8 55 66 4 4 888 5 5 999 0 33 5 77 333 77 5 00 555 5 77777777777 5 1 5 22222222 5 555 77 5 5 5 888 55 5 2 33 1 5 5 5 6 5 33 77 55555555 3 5 5 3 5 77777777777 3 44444 6 6 111 6 66666 8 7777 8 8 11111111111111111111111111111111111 2 1111111111111111 4444 0 0 3 7 0 2 8 0 8 88 000000 8 5 77 00000000 5 88888888 000 5 1 5 77 1 5 55 99 99 6 000000000000 1 1 99 7777 999 22 3 5 7 00 6 6 22222 6 0 0000 8 11 0 8 8 0 8 8 0 0 8 111 8 22 5 7777 444 77 8 77777 8 00000 0 11 8 444 8 0 8 0 00 3 0 0 0 888888 0 0 3 1111 0 5 0 33 0 0 5 22 33 33 11 33 2 77 4 111 9 0 0 0 0 0 0 66666 2 0 2 2 0 2 0 1111 0 2 666666 0 0 33333333333333333333333 0 0 777 3 000000000000000000 3 3 7 6 6 5 333 111 3 5 5 5 77 5 5 1 666 222
lowQualScore : ....... . . .. . . .. ..... . ..... . . . ... . . . . . . .. .. .. . . . .. .. . . ... . . ... . .. . .. ... .. . .. ... . ........... . . . ........ . ... .. . . . ... .. . . .. . . . . . . .. .. ........ . . . . . ........... . ..... . . ... . ..... . .... . . ................................... . ................ .... . . . . . . . . . .. ...... . . .. ........ . ........ ... . . . .. . . .. .. .. . ............ . . .. .... ... .. . . . .. . . ..... . . .... . .. . . . . . . . . . ... . .. . .... ... .. . ..... . ..... . .. . ... . . . . .. . . . . ...... . . . .... . . . .. . . . .. .. .. .. .. . .. . ... . . . . . . . ..... . . . . . . . .... . . ...... . . ....................... . . ... . .................. . . . . . . ... ... . . . . .. . . . ... ...
lowQualScore : 2222222 0 1 66 0 0 11 33333 9 00000 4 4 4 888 4 4 4 4 9 4 00 22 66 4 8 9 55 11 4 4 888 0 0 777 1 66 7 99 666 99 7 00 666 0 00000000000 0 4 7 11111111 7 111 99 0 0 0 888 11 0 9 66 4 7 7 7 6 7 66 99 11111111 6 7 7 3 7 33333333333 9 33333 7 7 777 7 66666 0 8888 0 0 44444444444444444444444444444444444 5 0000000000000000 8888 8 8 2 0 0 5 0 8 0 88 222222 0 6 99 77777777 7 77777777 000 7 3 7 99 4 7 77 22 22 7 888888888888 7 0 22 8888 000 77 3 0 3 33 7 7 55555 0 8 0000 0 00 8 0 0 8 0 4 6 8 0 888 0 00 0 0000 222 00 0 00000 0 00000 8 00 0 000 0 8 0 6 11 2 0 0 0 888888 0 0 2 2222 0 5 0 88 0 0 0 55 88 22 88 88 5 88 0 000 0 0 0 0 0 0 0 88888 5 0 5 5 0 5 0 8888 0 5 222222 0 0 55555555555555555555555 0 0 000 2 000000000000000000 2 2 5 5 7 7 999 444 9 7 7 7 99 7 7 4 888 888
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGA-ACCCC-AAAAATAT-AGGATT--ATA----GGGATT-----TTTTTT-C-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAATTT-ATATGGA-TAT-ATAG--G-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCTAGA--A--A-CGTAG-CAAAA-TTTG-TA--TTT------AAC-AAAAACTGGAGT-AA----ANT-GACAAC-AT-A-CATT--GT-AAACTAAAAAG-AC-AT---TT-AACTTT-GATTGGTTTT--CTGTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAA-TAT--A--TAACCCTCTATTCTA--TGTAC-ATTT-GTACAT-GTATT-ATGGCCTCC---CCC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTC-CCATCTTA-TTAT--TTTTTT-CCA-AC---CAAATGTTC-ATTAATGCCATTA-----TATTCAAATGTTCATTATGC-ATTAT-ACCAA-TGTTCATTATGCCGTTATATCTTATTCAGTT-TCTG-ATTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATT--TCA--------T-TTCC---A----TGTT---GATT-CCAGGATGA-T--CAAA-G--TTT--AAGGAC--TT-GCAGATT----TA-TT--ATTTTTTTTATTCT--C-AT-GTCCAT-TT-TATA-TCCTTGGGATCCTTCTGGAAT-CAAC-ATGTA-GGGATA---TGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTCG-CAATTATT-ATTT-AACAATAAACT-TTTA--TCA-TCTT-TCCCAA----AGGCAA-AATGCTA-A-TAAA-TT--AAAAATA-TATA-----TTACAATC--TATAG-CATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAA--C-CCA-TTCTTAAA-GATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATANATGTATA--TCTCTTTGT--AANGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTA-TCATACCTTATAACACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-ATAAAT-GT-----AT-GT---------AT-ATGAGTATC-TTGATTGCAT-ATATAATAATAAG-T-AAAGAGATTAT-TTTTGCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTTTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-A-AT-ATATAGGG
Reference ( gi|2 ) : GCAGGGTGTCAA-------GCCA-CTTTTGAAACCCC-AAAAATAT-AGGATT--ATA----GGGATT-A---TTTTTT-C-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAATTT-ATATGGA-TA--ATAG--G-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCTAG---A--A-CGTAA-GAACA-TTTG-TA--TT-------AAC-AAAAACTGGAGT-AA----ATT-GACAAC-AT-A-CATT--GT-AAACTAAAAAG-AC-AT---TT-AACTTT-GATTGGATTT--CTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAA-TAT--A--TAACCCTCTATTCTA--TATAC-ATTT-GTACAT-GAATT-ATGGCCTCC---CTC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTC-C-ATCCTA-TTAT-ATTTTTT-CCA-AC---CAAATGTTC-ATTAATG-CATTA-----TATTCAAATGTTCATTATGC-ATTAT-ACCAAATGTTCATTATGCCATTATATCTTATTCAGTT-TCTG-ATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATT--TCA--------T-TTCC---A----TGTT---GATT-CCAGGATGA-T--CAAA-G--TTT--AAGGAC--TT-GCAGATT----TA-TT--ATTTTTTTTATTCT--C-AT-GTCCAT-TT-TATA-TCCTTGGGATCCTTCTGGAAT-AAAC-ATGTA-GGGATA---TGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTCG-CAATTATT-ATTCAAACAATAAACT-TTTA--TCA-TCTTCTCCCCA----AGGCAA-AATGCT--A-TAAA-CT--AAAAATA-TATA-----TTACAATC--TATAG-CATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-A--C-CCA-TTCTTAAA-GATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGT-AAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTA-TCATACC-TATAATACTAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-ATAAAT-GC-----AT-GT---------AT-ATGAGTATC-TTGATTGCA--ATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TGTTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-A-AT-A-ATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCC-AAAAATAT-AGGATT--ATA----GGGATTTA---TTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAATTT-ATATGGA-TA--ATAG--G-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCTAGAA-A--A-CGTAA-GAACA-TTTG-TA--TT-------AAC-AAAAACTGGAGTAAA----ATT-GACAACAAT-A-CATT--GT---ACTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTAT--A--TAACCCTCTATTCTA--TATAC-ATTT-GTACAT-GAA-T-ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CTT-T----CTC-C-ATCCTA-TTAT--TTTTTT-CCA-AC---CAAATGTTCAATTAATGCCATTA-----TA-TCAAATGTTCATTATGC-ATTATAACCAAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTTATCA--------T-TTCC---A----TGTT---GATT-CCAGGATGA-T--CAAA-G--TTT--AAGGAC--TT-GCAGATT----TA--T--ATTTTTTTTATTCT--CAAT-GTCCATATT-TATA-TCCTT-GGATCCTTCTGGAATAAAAC-ATGTA-GGGATA---TGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTCG-CAATTATT-ATTC-AACAATAAACT-TTTA--TCA-TCTTCTCCCCA----AGGC-A-AATGCT--A-TAAA-CT--AAAAATA-TATA-----TTAC-ATC--TATA--CATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAA--CACCA-TTCTTAAA-GATAAA-TCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TTGTTCAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTA-TCATACCTTATAATACTAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-ATAAATCGC-----AT-GT---------ATAATGAGTATC-TTGATTGCA--ATATAATAATAAGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTGTTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAA-ATAA-ATAGGG
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA---CCT-AAAAAAAT-A--------TA----GG--TT-----TTTCTT-T-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAATTT-ATAGGGATTAT-ATAA--G-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCTAG---A--A-AGCTA-GCAAATTTTA-TAG-TT-------AAC-AAAAAATGGAAT-AATATGATT-TTTAAC-AT-A-CATT--GT-AAACTAAAAAG-ACAATAAATT-AACTTT-GATTGGTTAT--C---------------T-ATC-TCTGACACAAAACCTAA-T-T--AGTTA--CCTCTATTCTAAGTA-AC-GT----TACAT-GTATT-ATGGCCTCC---TCCCCCGGTTTC-----CTACAGCCATTTC-CTT-T---CCTCGC-ATTTGATTTGTAATCTTTTGCCACACTTTCCAAT-TTC-A--AAT----TTA-----TATTgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|17 : agatgataGCAGGGTG-CAA-------GCCA-CTTT---GACCCC-AAAAATAA-AGGATT--AT-----GGGATT-T---TTTTTT-C-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTT--TATAGG-GA--ATAtccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|5 : tCAGGGTGTCAA-------GC-A-CTTTGGA--CCCC-AAAA-TA--AGGATT--ATA----GG-ATT------TTTTT-T-AA-T---TATA-TAGAGGC-AA-T-ATAGGGC--TTTT-TAAT--TAAATTT-ATATGGA-TAT-ATAG--G-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCTAG---A--A-TGTAA-CAAAG-TTTG-TA--TT-------TAC-AAAAACTGGA-T-AAT---AAT-GACAA--AT---CATTTGGT-AAACT--AAAG-AC-AT---TT-AACTTT-GATTGGTTTT--CTGTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--AT--A--TAACTCTCTATTCTATGTGTAC-ATTT-AT-CAT-GTATT-A-GGCCTCT---CCC-----T--C-----CCAC-GCCAATTT-CCT-T---CCTC-CTAT-TTA-TTTT-TTTTTTC-TCA-AT---CAAATGTTC-ATT-ATGCCATTATATCTTATTCAGTTTTTCGGTTGGT-ATTGT-------TG-TCATTTT--TGTCACAGCTT-TCCAATT-TCAA-ATTG--------------------------TC-CA--T--TCA--------T--------------GTT---GATT-CCAGGATGA-T--CAAATGTTTTT--AAGGAC--TTGGCAGA-------A-TT--TTTTTTTTAATCTT--C-AT-GTCC-T-TT-TATA-TCCTT-GGATCCTTCTGGAAT-CAACAATGTT-AGGA-A---TGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTAG-CAATTATTCATTT-AACAATAATCT-TTCAAGTCA-TCT--TCCCAA----AGGCAA-AATGCTA-A-TAAA-
gi|14 : CAGGGTGTCAA-------GCCA-CTTTTG--ACCCC--AAAATAT--GGATT--ATAGGGGGGGATT-AATTTTTTTC-C-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AATTT-ATATGGA-TA--TT------GTAGTT-GTCCCGGAA---TTT-TGCGTTat
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTG--ACCCC-AAANGTGT-
gi|8 : tgcatAGGGTGTCAA-------GCCA-CTTTTGA--CCCC-AAAAATAT-AGGATT--ATA----GGGATT-A---TTTTTT-C-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAATTT-ATATGGA-TAT-ATAG--G-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCTAG---A--AATGTAG-CAAAT-TTTG-TA--TTT------AAC-AAAAACTGGAGT-AA----TAT-GACAAC-AT-A-CATT--GT-AAACTAAAAAG-AC-AT---TT-AACTTT-GATTGGTTTT--CTGTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAA-TAT--A--TAACCCTCTATTCTA--T------TCT-ATACAT-GTATT-ATGGCCT-C---CTC-----CTCC-----Cgt
gi|9 : AGGGTGTCAA-------GCCA-CTTTTG--ACCCCAAAAAATATCAGGATT--ATA----GGGAAT-T---TTTTTT-CAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAATTTCATAGGGA-TAT-ATAG--G-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCAAGA--A--A-CCTAATGCAAATTTTG-TATTTT-------AACAAAAAACTGGAGT--A----AT---ACAAC-AT-ACCAAT--GT-AAATAAAAAAGAAC-AT---TT-AACTTT-GAATG
gi|4 : AAAATAT-AGGATT--AT----------------TTTTTT-C-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGATTA-TTATGGAATAT-GTAG--GCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCTAG---ATAA-CATAG-CAAAT-TTTGATAGTTT-------AAC-AAAAACTG---T-AT----ATTTGACAAC-ATTATCATT--GTTAAACTAAAAAG-AC-AT---AT---CTTT-GATTGGATTTT-CTGTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAA-TATGTA--TAACCCT--ATTCTA--TGTATTATTTAGTACATTGTATT-ATGGCCTCC---TCC-----TCCCTACAGCTACAGCCATTTCTCTTGT---CCTC-CCAT--TA-TTAT----TTTT-CCA-A-----------------------------------TCAAATGTT-ATTATGCCATTAT-ATTAA-TGTTCATTATGCCATTATATCTTAT-CAGTT-TCTG-GT-GGATT-GT--GTCTTTTTGTCGCACTTTCTCAATT----A--------T-TTCC---A----TGTT---GATT-CCAGGATGAAT--CAAA-G--TTT--AAGGAC--TT-GCAGATG----TA-TTTAATTTTTTTTACTCT--C--T-GTCCAT-TT--ATGGTCCTTGGG--TCGTCTGGAATCAAAC-ATGTA-GGGAT----TGAAA-TATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTCAACAA-ATACTATTTA---CACTCCCTTCCCAA----AGGCAACAATGCT--AATAAA-TT--AAAAATA-TATAATATGTTACAATC--TATAGGCATG--TT-AAAT--TG-ACATAAATTTAATTTA-TTTCCTACTCCTTAAAAGC-AACT-CCA-TTCTTAAAAGATAAATTCTTCATAT-T--TAAAGGA-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGAT-
gi|10 : ATAT-AGGGTTTTATA----GGGATT----------T-T-AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAATTT-ATA-GGA-AAATATAT--G-GAATTT-ATgat
gi|16 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--ATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGAA--A-CGTAG-CAA-A-TTTG-TA--TTTAAATTAAAC-AAAAACTGGAGagggacttgacaccct
gi|11 : attaaaagacttcaaattgcacaat-TTTG-TA--TTT------AAC-AGAAACTGGAGC-AA----TAT-GACAAC-AT-A-CATT--GT-AAACTAAAAAG-AC-AT---TT-AACTTT-GATTGGTTTT--CTGTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAA-TAT--A--TAACCCTCTTTTCTG-----------T-GTACAT-GTATT-ATGGCCTCC---TCC-----TACC-----CTACAGCCATTTC-CTT-T---CCTC-C-
gi|3 : gcaaatT-AAACTAAAAAG-AC-AT---TT-CACTTTTGATTGA--TT--CTGTT-CAGCTTCTTAT-ATC-TC-GACAC-AAACCCAA-TATT-A--TAACGCTCTATTCTAC-TGTAC-ATTT-GTACAT-GTATTTATGGCCTCC---TCC-----TTCC-----CTACAGCCATTTC-CCT-TGTTCCTC-CCATC-TA-TTAT----TTTT-CCA-A-----------------------------------TCAAATGTTCATTATGC-----------------CATTATG--------TCTTATTCAGTT-T-TG-GTTGGATT-GTTCGTCTTTTCGTTGCACTTTC-CACAT--TCA--------T-TTCC---A----TGTT---GATTCCCAGGATGA-T--C-AA-G--TTT--AAGGACTTTT-GAAGATT----TATTT--ATTTGTTATATT-T--C-ATGGTCCAT-TT-CATATTCCTTGGG--CCTTCTAGAAT-CAAC-A-GTATAGGATA---TAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTCG-CATTTATT-ATTCAACAAATAAACT-TTTA--TCA-TCTT-----CA----AAGC---AATGCTAAA-TAAA-GTTAAAAAATATTGTA-----TTTCAATC--TATAG-CATGTTTT-AAATATTGCACATAAA-TTTAT----TT-CCTACTCCTTCAAAGCAA--C-CCATTTCTTAAA-GATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTTTT-TTCAAGCAA-GATATG-CCAAAAGTC--AAGATACATGTATA--TCTCTTT-T--AATGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTA-TCATACC-TATA--ACTAT-AAGTAACTTTCCC-----GAAACAGGTTATTTAACACAATAAA---------AT-GTCGATAACACAT-ATGAGTATC-TTGATTGCATTATATAA-AATA-----------------TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TTTTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TTcatt
gi|6 : -ATTTGATTTGTA-ATCTTTT-GCCACACTTTC-CAATT--TCAAATTTATAT-TTCC---G----TGTTATTGATT-CCAGA--GA-T--CAAA-G--TTT--AAGGAC--TT-GCAGATT----T--TT---TTTTTTTTA--CT--C-AT-GTCCAT-TTATATA-TCCTTGGCATCCTTCTGGAAT-CAAC-ATGTA-GGAATA---TGAAAAT-------------TAC-T--AG--TA-TTTTAG-CAATT-----TTTGACCAATAAACT-TTTA--TCA-TCTT-TCCCAATTTTAGGC-A-AATGCTA-A-TAAATTT--AAAAATG-TACA-----TTACAATCTATATAG-CATG--TTAAAATATTG-ACA-AAAgggctg
gi|5 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcTT--TCA--------T-TCCT---AACATTGTT---GATT-CCAGAAGGA-T--CCAA-GGATATAAAAGGAC--AT-GAAGATTAAAAAA-AA--A--------ATTCTGCC-AA-GTCC---TT-AAAA-ACATT-TGATCATCCTGGAAT-CAAC-ATGAA-TGGACAATTTGAAA
gi|6 : cagggtgtcaagcactttggaccccaaaataaggattataggattttttttaattatatagaggcaatatagggctttttaattaaatttatatggatatatagggtatttattgaaggttttgtgtgaaagtcctactgtttcagcctagaatgtaacaaagtttgtatttacaaaaactggataataatgacaaatcatttggtaaactaaagacatttaactttgattggttttctgttccagctcttataatcttctgacacaaaacccaaatataactctctattctatgtgtacatttatcatgtattaggcctctccctcccacgccaatttccttcctcctatttattttttttttctcaatcaaatgttcattatgccattatatcttattcagtttttcggttggtattgttgtcatttttgtcacagctttccaaTT--TCA--------TATTCCTACA----TGTT---GATT-CCAGAAGGA-TGCCAAG-G--atataaaaaagaattagtatattttagcaattattcatttaacaataatctttcaagtcatcttcccaaaggcaaaatgctaataaaat
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcatttgatttgtaatcttttgccacactttccaatttcaaatttatatttccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatA-TATA-----TTACAATC--TATAG-CATG--TT-AGATATTG-ACA-AA--TTTATTTATTT-CCTACTTCTTAAAAGCAA--C-CCA-TTCTTAAA-GATAAATTCTTCATATAA--AAGAGAG-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTA-TCATACCTTATAAC-TTATAAAGGTACTTTCCC---AG-AAACA-GCTATTTAACAC-ATACAT-GT-----ATAAC---------AT-ATGAGTATC-TTGATTGCAT-ATAAAATAAT-AG-T--AAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTTTTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-A-TT-ATATAGGGattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATA-C-TATA----TAT-AAGGTACTTT-CC---AG-AAACA-GCTATTTAACAC-ATAAAT-GTTATAGAT-AT---------AT-ATGAGTATCTTTGATTGC----TATAAttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|10 : ATACTAATA---TAAAAGAGAT-AT-TT--GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTTTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG-ATAT---ATAGGG
gi|13 : C-ATAAAGGCTTC-ATATATCAGTG-TTTTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-A-AT-ATGTAGGGttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|18 : -AAAAAGGCTTC-ATATATCAGTG-TTTTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-A-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|12 : GCTTC-ATATATCAGTA-TTTCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-G-AT-ATGTAAGG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC
Alignments
lowQualScore : 1111111 111 11 111111111 111 11 11 1111111 11111 1111 111 1 1 11 111111111 11111 11111 111 111 1111 1111 111 11111111 11111 5555555555555 1111 11 1 1 222222222222 111 111 111 1111 1 1 1111 111 11 1 11111 1 1 1111 1 11 1 11 11 11 1 222 22222 44444 111 33333333 1111 1 111 1
lowQualScore : 4444444 4 1 888 3 00 999999999 7 666 44 3 222 3 3 3 3 3 22 44 88 3 3 1 6 3 3 777 4 4 1 7 11 5 66 66 5 5 66 7 4 8 4444444 4 0 55555 0000 5 222 66 4 4 4 777 4 4 0 0 5 0 5 5 5 5 11 66 777777777 2 5 5 5 888 22222 4 22222 5 5 000 0 222 4444 6 1111 6 111 2 2 99999999 66666 1 0 11 6666666666666 5 7777 0 3 8 6 6 44 3 0 6 3 666666666666 111 6 6 6 99 99 6 6 222 1 1 6 6 6 6 666 6 7 111 6 6 5555 6 99 6 6 6 3 6 6 6 99 99 1 3 4444 777 44 3 8 6 66666 99 6 99 6 6 7 0 6 0 8 8 0 0 6 8 8 0 5555 8 0 8 11 8 8 0 8 11 88 11 11 99 1 8 8 8 8 8 8 3 8 66 88 8 8 5 222 8 77777 8 8 8 8 00000 8 8 8 999 0 99999999 5555 0 0 6 3 5 5 5 5 888 5 5 5 66 5 5 0 55 3
lowQualScore : ....... . . ... . .. ......... . ... .. . ... . . . . . .. .. .. . . . . . . ... . . . . .. . .. .. . . .. . . . ....... . . ..... .... . ... .. . . . ... . . . . . . . . . . .. .. ......... . . . . ... ..... . ..... . . ... . ... .... . .... . ... . . ........ ..... . . .. ............. . .... . . . . . .. . . . . ............ ... . . . .. .. . . ... . . . . . . ... . . ... . . .... . .. . . . . . . . .. .. . . .... ... .. . . . ..... .. . .. . . . . . . . . . . . . . . .... . . . .. . . . . .. .. .. .. .. . . . . . . . . . .. .. . . . ... . ..... . . . . ..... . . . ... . ........ .... . . . . . . . . ... . . . .. . . . .. .
lowQualScore : 4444444 4 9 777 3 00 666666666 3 444 22 6 777 6 6 6 6 6 33 00 66 6 6 9 7 6 6 888 4 4 9 0 99 0 99 99 0 0 11 1 4 9 7777777 4 1 66666 6666 0 111 99 4 4 4 888 4 4 0 4 0 0 0 0 0 0 99 99 999999999 0 0 0 0 888 55555 1 55555 7 7 000 7 555 2222 7 2222 7 777 5 5 33333333 77777 0 6 66 6666666666666 6 8888 8 8 0 7 7 22 3 8 7 2 777777777777 777 7 7 7 22 22 7 7 777 7 0 7 7 7 7 888 7 3 777 7 7 2222 7 22 7 7 7 3 7 7 7 22 22 7 3 2222 222 00 3 0 7 77777 22 7 22 7 7 3 8 0 8 0 0 0 8 0 0 0 8 2222 0 6 0 00 0 0 0 0 00 88 66 00 00 0 0 0 0 0 0 0 2 0 44 88 0 0 4 666 0 88888 0 0 0 0 00000 0 0 0 444 8 88888888 0000 8 8 0 2 7 0 0 0 888 0 0 0 99 0 0 0 99 5
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAANTTTG-TA-TTT------AAC-AAAAACTGGAGTAA-NAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCTTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCATTATGCATTATA-CC-AA-TGTTCATTATGCCGTTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-ATTC-AA-C-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGTA-AAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATA-AGT-TAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
Reference ( family-2315 ) : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAAATTTG-TA-TTT------AAC-AAAAACTGGAGTAA-ANT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCC---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCTTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCATTATGCATTATA-CC-AA-TGTTCATTATGCCGTTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-ATTT-AA-C-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATANATGTATA--TCTCTTTGT--AANGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAACACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-GTAT-ATGAGTATC-TTGATTGCA-TATATAATAATA-AG--TAAAGAGATTAT-TTTTGCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATT-TATTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AAACGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTAA-AATTGA----CAACAAT-A-CATT--GT-A--CTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTAT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAAT--ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CTT-T---CT--CCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCAATTAATGCCATTA-----TAT-CAAATGTTCATTATGCATTATAACC-AAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTTATCA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-T---ATTTTTTTTATTCTCAAT-GTCCATATT-TAT-A-TCCTT-GGATCCTTCTGGAATAA-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-ATTC-AA-C-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGC-A-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTAC-ATC--TATA--CATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAACACCA-TTCTT-AAAGATAAA-TCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TTGTTCAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-AT-AAATCGC-----AT-GTATAATGAGTATC-TTGATTGCA--ATATAATAATA-AGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAAATAAATAGGG
gi|10 : ATACTAATATA----AAAGAGAT-AT-TT--GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG--ATATATAGGGgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|10 : ATAT-AGGGTTTTATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAA-TTT-ATAGGAA-AATATATG-GAATTT-ATttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|11 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--GCAAATTTTG-TA-TTT------AAC-AGAAACTGGAGCAA-TAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAAT-AT--A--TAACCCTCTTTTCTG------------T-GTACAT-GTATT-ATGGCCTCCT---CC-----TACC-----CTACAGCCATTTC-CTT-T---CCTCCCATagggacttgacaccct
gi|12 : GCTTC-ATATATCAGTA-TT-TCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-GATATGTAAGGt
gi|13 : atC-ATAAAGGCTTC-ATATATCAGTG-TT-TTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATGTAGGGtttaatagggattataatgaattataagggtgtagggatcctcaaatctatagaaaaatatagaaattcatagggacttgacaccctg
gi|13 : AATATGT-AGGGTTCAATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCCT-C----------TTT-CTAGGAA-AATATAGG-A-ATTT-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|14 : cataaaggcttcatatatcagtgttttttatcatttcgaaaaaatatcacagatttttctgCAGGGTGTCAA-------GCCA-CTTTTG-A-CCCC-AAAATAT--GGATT--ATAGGGGGGGATTAATT-T---TTTTCC-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AA-TTT-ATATGGA-TAT-T----GTAGTT-GTCCCGGAA---TTT-TGCGTTcagg
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATAC--TATA----TAT-AAGGTACTTTCC-----AGAAACA-GCTATTTAACAC-AT-AAAT-GTTATAGAT-ATAT-ATGAGTATCTTTGATTGC--TATA
gi|16 : A-TATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGA-AA-CGTA--GC-AAATTTG-TA-TTTAAATTAAAC-AAAAACTGGAGa
gi|17 : attaaaagacttcaaattgcacaGCAGGGTG-CAA-------GCCA-CTTT--GA-CCCCAAAAATAA-AGGATT--ATGGGA--------TTT-T---TTTTTC-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTTT-ATAGGGA--ATA
gi|18 : t-AAAAAGGCTTC-ATATATCAGTG-TT-TTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AA
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTG-A-CCCCAAANGTGT-
gi|2 : tgcatGCAGGGTGTCAA-------GCCA-CTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-A--CGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTAA-ATT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-ATTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAAT-AT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAATT-ATGGCCTCCC---TC-----TTCC-----CTACAGCCATTTC-CTT-T---CCT-CCATCCTATT----ATATTTTTTC-CA-AC---CAAATGTTCA-TTAATG-CATTA-----TATTCAAATGTTCATTATGCATTATA-CCAAA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-A-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-ATTCAAA-C-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGCAA-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTACAATC--TATA-GCATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-AC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTA-AAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACC-TATAATACTAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAAT-GC-----AT-GTAT-ATGAGTATC-TTGATTGCA--ATATAATAATA-AGT-TAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TG-TTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATA-ATAGGGgt
gi|3 : T-AAACTAAAAAG-AC-AT---TTCA-CTTTTGATTGA-TT--CT-GTT-CAGCTTCTTAT-ATC-TC-GACACAAA-CCCAAT-ATT-A--TAACGCTCTATTCTAC-TGT-AC-ATTT-GTACAT-GTATTTATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CCT-TGTTCCTCCCATCT-ATT----AT-TTTT--------C---CAA----------------------------TCAAATGTTCATTATGC-----------------CATTATG--------TCTTATTCAGTT-T-TGG-TTGGATT-GTTCGTCTTTTCGTTGCACTTTC-CACATT--CA--------TTTCCATGTT---GATTCCCAGGATGA-TC-AA-G--TTTAAGGACTTTT-GAAGATTTATTT--ATTTGTTATATT-TCA-TGGTCCAT-TT-CAT-ATTCCTTGGG--CCTTCTAGAAT-C-AAC-A-GTATAGGATATAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTC-GCATTTATT-ATTC-AA-CAAATAAACT-TTTA--TCA--TCTT----CAA----A-GC---AATGCTAAATAAAGTTAAAAAATATTGTA-----TTTCAATC--TATA-GCATGTTTT-AAATATTGCACATAAA-TTTAT----TT-CCTACTCCTTCAAAGCAAC-CCATTTCTT-AAAGATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTTTT-TTCAAGCAA-GATATG-CCAAAAGTC--AAGATACATGTATA--TCTCTTT-T--AATGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTAT-CATACC-TATA--ACTAT-AAGTAACTTTCCC-----GAAACAGGTTATTTAACACAATAAAAT-GTCGATAAC-ACAT-ATGAGTATC-TTGATTGCATTATATAA-AATA------------------TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TT-TTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TT
gi|4 : AAAATAT-AGGATT--AT----------------T---TTTTTC-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGA-TTA-TTATGGAATATGTAGGCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCT--AGATAA-CATA--GCAAATTTTGATAGTTT------AAC-AAAAACTG---TAT-ATTTGA----CAACA-TTATCATT--GTTAAACTAAAAAG-AC-AT---AT---CTTT-GATTGGATTTTCT-GTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-ATGTA--TAACCCT--ATTCTA--TGT-ATTATTTAGTACATTGTATT-ATGGCCTCCT---CC-----TCCCTACAGCTACAGCCATTTCTCTTGT---CCTCCCAT--TATT----AT-TTTT--C-CA-AT---CAAATGTT-A-TTA-TGCCATTA-----TATT--------------------------AA-TGTTCATTATGCCATTATATCTTAT-CAGTT-TCTGG-T-GGATT-GT--GTCTTTTTGTCGCACTTTCTCAATT----A--------TTTCCATGTT---GATT-CCAGGATGAATCAAA-G--TTTAAGGAC--TT-GCAGATGTA-TTTAATTTTTTTTACTCTC--T-GTCCA--TT-TATGG-TCCTTGGG--TCGTCTGGAAT-CAAAC-ATGTA-GGGAT-TG-AAATATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTCAA-C-AA-ATACTATTTA---CACTCCCT-TCCCAA----AGGCAACAATGCT-AATAAA-TT-AAAAATA-TATAATATGTTACAATC--TATAGGCATG--TT-AA--ATTG-ACATAAATTTAATTTATTT-CCTACTCCTTAAAAGCAACTCCA-TTCTTAAAAGATAAATTCTTCATAT-T--TAAAGGA-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGATGATgggctg
gi|5 : CAGGGTGTCAA-------GC-A-CTTT-GGA-CCCCAAAA-TA--AGGATT--ATAGG---------ATT-T---TTTTT--AA-T---TATA-TAGAGGC--AAT-ATAGGGC--TTTT-TAAT--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCT--AG--AA-TGTA--ACAAAGTTTG-TA-TTT-------AC-AAAAACTGGA-TAATAAT-GA----CAA-A-T---CATTTGGT-AAACT--AAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--AT--A--TAACTCTCTATTCTATGTGT-AC-ATTT-AT-CAT-GTATT-A-GGCCTCTC---CC-----T--C-----CCAC-GCCAATTT-CCT-T---CCTCCTAT-TTATT----TT-TTTTTTCTCA-AT---CAAATGTTCA-TT-ATGCCATTATATCTTATTCAGTTTTTCGGTTGGTATTGT--------TG-TCATTTT--TGTCACAGCTT-TCCAATT-TCAAA-TTG--------------------------TC-CA--TT--C--------------ATGTT---GATT-CCAGGATGA-TCAAATGTTTTTAAGGAC--TTGGCAGA---A-TT--TTTTTTTTAATCTTCA-T-GTCC-T-TT-TAT-A-TCCTT-GGATCCTTCTGGAAT-C-AACAATGTT-AGGA-ATGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTA-GCAATTATTCATTT-AA-C-AATAATCT-TTCAAGTCA--TC-T-TCCCAA----AGGCAA-AATGCT-AATAAA-
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA---CCTAAAAAAAT-A--------TAGG----------TT-T---TTCTTT-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAA-TTT-ATAGGGATTATATAAG-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCT--AGA-AA-GCTA--GCAAATTTTA-TA-GTT------AAC-AAAAAATGGAATAA-TAT-GATTTTTAACA-T-A-CATT--GT-AAACTAAAAAG-ACAATAAATTAA-CTTT-GATTGG-TTATC----------------T-ATC-TCTGACACAAAACCTAAT--T--AGTTA--CCTCTATTCTA--AGTAAC-GT----TACAT-GTATT-ATGGCCTCCT---CCCCCGGTTTC-----CTACAGCCATTTC-CTT-T---CCTCGCATTTGATTTGTAAT-CTTTTGC-CACACTTTCCAAT-TTCA---AAT----TTA-----TATTat
gi|6 : agatgataA-TTTGATTTGTA-ATCTTTT-GCCACACTTTC-CAATTT--CAAATTTATATTTCCGTGTTATTGATT-CCAGA--GA-TCAAA-G--TTTAAGGAC--TT-GCAGATTT--TT---TTTTTTTTA--CTCA-T-GTCCAT-TTATAT-A-TCCTTGGCATCCTTCTGGAAT-C-AAC-ATGTA-GGAATATGAAAAT-------------TAC-T--AG--TA-TTTTA-GCAATT-----TTT-GACC-AATAAACT-TTTA--TCA--TCTT-TCCCAATTTTAGGC-A-AATGCT-AATAAATTT-AAAAATG-TACA-----TTACAATCTATATA-GCATG--TTAAAATATTG-ACA-AAAtccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcA-TATA-----TTACAATC--TATA-GCATG--TT-AGATATTG-ACA--AATTT-ATTTA-TTTCCTACTTCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATATAA--AAGAGAG-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTAT-CATACCTTATAAC-TTATAAAGGTACTTTCCC---A-GAAACA-GCTATTTAACAC-AT-ACAT-GT-----ATAACAT-ATGAGTATC-TTGATTGCA-TATAAAATAAT--AG--T-AAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-ATTATATAGGG
gi|8 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCT--AGA-AA-TGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTAA-TAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--T-------TCT-ATACAT-GTATT-ATGGCCTCCT---CC-----TCCC-----ttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|9 : AGGGTGTCAA-------GCCA-CTTTTGAC-CCCAAAAAATATCAGGATT--ATAGGGA-------ATT-T---TTTTTCAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAA-TTTCATAGGGA-TATATAGG-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCA--AGA-AA-CCTAATGCAAATTTTG-TATTTT------AACAAAAAACTGGAGTAA---T--A----CAACA-T-ACCAAT--GT-AAATAAAAAAGAAC-AT---TTAA-CTTT-GAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC
Alignments
lowQualScore : 1111111 111 11 111111111 111 11 11 1111111 1111 111 1 1 11 111111111 11111 11111 111 11 1111111 111 11111 33333 1 11 1 1 222222222222 111 11 111 111 1111 1 1111 1 11111 11 1 1 1 1111 1 11 11 11 11 1 111 22222 44444 111 2222222 1111 2 111 1
lowQualScore : 4444444 4 1 888 3 00 999999999 7 666 44 3 222 3 3 3 3 3 22 44 88 3 3 1 6 3 3 777 4 4 1 7 11 5 66 66 5 5 66 5 4 8 4444444 4 0 5 999 5 0000 5 222 66 4 4 4 777 4 4 0 0 5 0 5 5 5 5 11 66 777777777 2 5 5 5 888 22222 22222 5 000 5 0 77 5555555 6 6 111 8888 2 66666 44444 2 77777 0 0 22222 8 0 0 2 0 3 8 6 6 44 3 0 6 3 666666666666 111 6 6 6 99 55 999 1 1 6 6 6 6 6 6 6 7 111 6 6 5555 6 99 6 6 666 6 6 6 99 99 1 3 4444 7 6 7 6 3 8 6 66666 99 6 55 6 7 5 88 8 0 0 6 8 8 0 5555 8 0 8 8 11 8 3 8 11 8 0 11 11 88 6 8 8 8 8 8 8 3 8 66 88 8 8 5 999 8 77777 8 8 8 8 00000 8 8 8 999 0 6666666 5555 0 0 0 3 5 5 5 5 888 5 5 5 66 5 5 0 55 3
lowQualScore : ....... . . ... . .. ......... . ... .. . ... . . . . . .. .. .. . . . . . . ... . . . . .. . .. .. . . .. . . . ....... . . . ... . .... . ... .. . . . ... . . . . . . . . . . .. .. ......... . . . . ... ..... ..... . ... . . .. ....... . . ... .... . ..... ..... . ..... . . ..... . . . . . . . . . .. . . . . ............ ... . . . .. .. ... . . . . . . . . . . ... . . .... . .. . . ... . . . .. .. . . .... . . . . . . . ..... .. . .. . . . .. . . . . . . . .... . . . . .. . . . .. . . .. .. .. . . . . . . . . . .. .. . . . ... . ..... . . . . ..... . . . ... . ....... .... . . . . . . . . ... . . . .. . . . .. .
lowQualScore : 4444444 4 9 777 3 00 666666666 3 444 22 6 777 6 6 6 6 6 33 00 66 6 6 9 7 6 6 888 4 4 9 0 99 0 99 99 0 0 11 3 4 9 7777777 4 1 0 666 0 6666 0 111 99 4 4 4 888 4 4 0 4 0 0 0 0 0 0 99 99 999999999 0 0 0 0 888 55555 55555 7 000 7 7 55 3333333 7 7 777 2222 5 77777 66666 5 22222 2 8 22222 0 8 0 8 8 8 0 7 7 22 3 8 7 2 777777777777 777 7 7 7 22 88 333 7 0 7 7 7 7 7 7 7 3 777 7 7 2222 7 22 7 7 888 7 7 7 22 22 7 3 2222 3 7 3 7 3 0 7 77777 22 7 88 7 3 8 88 0 0 8 0 0 0 8 2222 0 6 0 0 00 0 2 0 00 0 8 22 00 66 0 0 0 0 0 0 0 2 0 44 88 0 0 4 888 0 88888 0 0 0 0 00000 0 0 0 444 8 6666666 0000 8 8 0 2 7 0 0 0 888 0 0 0 99 0 0 0 99 5
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-A-TAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CT---T-TCCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATGA-TCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCTAA-TAAA-TTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATGTT--AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
Reference ( family-2315 ) : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAANTTTG-TA-TTT------AAC-AAAAACTGGAGTA-A-NAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CT---T-TCCTCCCATCTTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCATTATGCATTATA-CC-AA-TGTTCATTATGCCGTTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATGA-TCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCTAA-TAAA-TTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATGTT--AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATT-TATTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AAACGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-A-AATTGA----CAACAAT-A-CATT--GT-A--CTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTAT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAAT--ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CT---T-TCT--CCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCAATTAATGCCATTA-----TAT-CAAATGTTCATTATGCATTATAACC-AAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTTATCA--------TTTCCATGTT---GATTCC-AGGATGA-TCAAA-G--TTTAAGGACTT--GCAGATTTAT---ATTTTTTTTATTCTCAATG-TCCATATT-TAT-AT-CCTT-GGATCCTTCTGGAATAA-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTTCTCCCCA----AGGC-A-AATGCT-A-TAAA-CTAAAAA-TAT-ATA-----TTAC-ATC--TATA--CATATT--AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAACACCATT-CTT-AAAGATAAA-TCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTTGTT--CAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-AT-AAATCGC-----AT-GTATAATGAGTATC-TTGATTGCA--ATATAATAATAAGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAAATAAATAGGG
gi|10 : ATACTAATA---TAAAAGAGAT-AT-TT--GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG--ATATATAGGGgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|10 : ATAT-AGGGTTTTATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAA-TTT-ATAGGAA-AATATATG-GAATTT-ATttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|11 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--GCAAATTTTG-TA-TTT------AAC-AGAAACTGGAGCA-A-TAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAAT-AT--A--TAACCCTCTTTTCTG------------T-GTACAT-GTATT-ATGGCCTCCT---CC-----TACC-----CTACAGCCATTTC-CT---T-TCCTCCCATagggacttgacaccct
gi|12 : GCTTC-ATATATCAGTA-TT-TCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-GATATGTAAGGt
gi|13 : atC-ATAAAGGCTTC-ATATATCAGTG-TT-TTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATGTAGGGtttaatagggattataatgaattataagggtgtagggatcctcaaatctatagaaaaatatagaaattcatagggacttgacaccctg
gi|13 : AATATGT-AGGGTTCAATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCCT-C----------TTT-CTAGGAA-AATATAGG-A-ATTT-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|14 : cataaaggcttcatatatcagtgttttttatcatttcgaaaaaatatcacagatttttctgCAGGGTGTCAA-------GCCA-CTTTTG-A-CCCC-AAAATAT--GGATT--ATAGGGGGGGATTAATT-T---TTTTCC-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AA-TTT-ATATGGA-TAT-T----GTAGTT-GTCCCGGAA---TTT-TGCGTTcagg
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATAC--TATA----TAT-AAGGTACTTTCC-----AGAAACA-GCTATTTAACAC-AT-AAAT-GTTATAGAT-ATAT-ATGAGTATCTTTGATTGC--TATA
gi|16 : A-TATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGA-AA-CGTA--GCAAA-TTTG-TA-TTTAAATTAAAC-AAAAACTGGAGa
gi|17 : attaaaagacttcaaattgcacaGCAGGGTG-CAA-------GCCA-CTTT--GA-CCCCAAAAATAA-AGGATT--ATGGGA--------TTT-T---TTTTTC-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTTT-ATAGGGA--ATA
gi|18 : t-AAAAAGGCTTC-ATATATCAGTG-TT-TTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AA
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTG-A-CCCCAAANGTGT-
gi|2 : tgcatGCAGGGTGTCAA-------GCCA-CTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-A--CGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-A-ATT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-ATTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAAT-AT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAATT-ATGGCCTCCC---TC-----TTCC-----CTACAGCCATTTC-CT---T-TCCT-CCATCCTATT----ATATTTTTTC-CA-AC---CAAATGTTCA-TTAATG-CATTA-----TATTCAAATGTTCATTATGCATTATA-CCAAA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATGA-TCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-A-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTCAAACAA-TAAACT-TTTA--TCA--TCTTCTCCCCA----AGGCAA-AATGCT-A-TAAA-CTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATATT--AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-AC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGT-AAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACC-TATAATACTAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAAT-GC-----AT-GTAT-ATGAGTATC-TTGATTGCA--ATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TG-TTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATA-ATAGGGgt
gi|3 : T-AAACTAAAAAG-AC-AT---TTCA-CTTTTGATTGA-TT--CT-GTT-CAGCTTCTTAT-ATC-TC-GACACAAA-CCCAAT-ATT-A--TAACGCTCTATTCTAC-TGT-AC-ATTT-GTACAT-GTATTTATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CCTTGT-TCCTCCCATC-TATT----A---TTTTTC-CA-AT---CAAATGTTCA-TT-ATGCCATTA-----TGT
gi|3 : -AA-TGTTCATTATGCCATTATGTCTTATTCAGTT-T-TGG-TTGGATT-GTTCGTCTTTTCGTTGCACTTTC-CACATT--CA--------TTTCCATGTT---GATTCCCAGGATGA-TCAA--G--TTTAAGGACTTTTGAAGATTTATTT-ATTTGTTATATT-TCA-TGGTCCAT-TT-CAT-ATTCCTTGGG--CCTTCTAGAAT-C-AAC-A-GTATAGGATATAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTC-GCATTTATT-A-TTC-AACAAATAAACT-TTTA--TCA--TCTT----CAA----AG-CAA---TGCTAAATAAAGTTAAAAAATATTGTA-----TTTCAATC--TATA-GCATGTTTTAAATATTGCACATAAATTT-ATTT-----CCTACTCCTTCAAAGCAAC-CCATTTCTT-AAAGATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTT-TTTTCAAGCAAG-ATATG-CCAAAAGTC-AA-GATACATGTATA--TCTCTTT-T-AAT-GTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTAT-CATACC-TATA--ACTAT-AAGTAACTTTCCC-----GAAACAGGTTATTTAACACAATAAAAT-GTCGATAAC-ACAT-ATGAGTATC-TTGATTGCATTATATAA-AATA-----------------TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TT-TTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TTcttattcagttttggttggattgttcgtcttttcgttgcactttccacattcatttccatgttgattcccaggatgatcaagtttaaggacttttgaagatttatttatttgttatatttcatggtccatttcatattccttgggccttctagaatcaacagtataggatataaaattataaaaaaaaaatgtagtatattttcgcatttattattcaacaaataaacttttatcatcttcaaagcaatgctaaataaagttaaaaaatattgtatttcaatctatagcatgttttaaatattgcacataaatttatttcctactccttcaaagcaacccatttcttaaagataaattcttcatacttaaagaggatttcaacgacttaaatacttcgcttttttcaagcaagatatgccaaaagtcaagatacatgtatatctcttttaatgtctttctactaacatgagtatgtgatgatcaataatgcatgtctaagttttgctaccctaagtacaccagattagagtatcatacctataactataagtaactttcccgaaacaggttatttaacacaataaaatgtcgataacacatatgagtatcttgattgcattatataaaatattttgctattatgatccaaaaaaggcttcagttatcagtgtttttcatcacttcggaaaaatacttcacaagattgggctg
gi|4 : taaactaaaaagacatttcacttttgattgattctgttcagcttcttatatctcgacacaaacccaatattataacgctctattctactgtacatttgtacatgtatttatggcctcctccttccctacagccatttcccttgttcctcccatctattatttttccaatcaAAAATAT-AGGATT--AT----------------T---TTTTTC-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGA-TTA-TTATGGAATATGTAGGCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCT--AGATAA-CATA--GCAAATTTTGATAGTTT------AAC-AAAAACTG---TATA-TTT-GA----CAACA-TTATCATT--GTTAAACTAAAAAG-AC-AT---AT---CTTT-GATTGGATTTTCT-GTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-ATGTA--TAACCCT--ATTCTA--TGT-ATTATTTAGTACATTGTATT-ATGGCCTCCT---CC-----TCCCTACAGCTACAGCCATTTCTCT---TGTCCTCCCAT--TATT----AT-TTTT--C-CA-AT---CAAATGTT-A-TTA-TGCCATTA-----TATT--------------------------AA-TGTTCATTATGCCATTATATCTTAT-CAGTT-TCTGG-T-GGATT-GT--GTCTTTTTGTCGCACTTTCTCAATT----A--------TTTCCATGTT---GATTCC-AGGATGAATCAAA-G--TTTAAGGACTT--GCAGATGTATTTAATTTTTTTTACTCTC--TG-TCCA--TT-TATGGT-CCTTGGG--TCGTCTGGAAT-CAAAC-ATGTA-GGGAT-TG-AAATATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTC-AACAA--ATACTATTTA---CACTCCCT-TCCCAA----AGGCAACAATGCTAA-TAAA-TTAAAAA-TAT-ATAATATGTTACAATC--TATAGGCATGTT--AA--ATTG-ACATAAATTTAATTTATTT-CCTACTCCTTAAAAGCAACTCCATT-CTTAAAAGATAAATTCTTCATAT-T--TAAAGGATT-CAATGACTT-AATACTT-GCTT-TT--CAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGATGATgggctg
gi|5 : CAGGGTGTCAA-------GC-A-CTTT-GGA-CCCCAAAA-TA--AGGATT--ATAGG---------ATT-T---TTTTT--AA-T---TATA-TAGAGGC--AAT-ATAGGGC--TTTT-TAAT--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCT--AG--AA-TGTA--ACAAAGTTTG-TA-TTT-------AC-AAAAACTGGA-TA-ATAAT-GA----CAA-A-T---CATTTGGT-AAACT--AAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--AT--A--TAACTCTCTATTCTATGTGT-AC-ATTT-AT-CAT-GTATT-A-GGCCT-CT---CC-----CTCC-----C-AC-GCCAATTT-CC---T-TCCTCCTAT-TTATT----TT-TTTTTTCTCA-AT---CAAATGTTCA-TT-ATGCCATTATATCTTATTCAGTTTTTCGGTTGGTATTGT--------TG-TCATTTT--TGTCACAGCTT-TCCAATT-TCAAA-TTG--------------------------TC-CA--TT--C--------------ATGTT---GATTCC-AGGATGA-TCAAATGTTTTTAAGGACTTG-GCAGA---ATT--TTTTTTTTAATCTTCA-TG-TCC-T-TT-TAT-AT-CCTT-GGATCCTTCTGGAAT-C-AACAATGTT-AGGA-ATGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTA-GCAATTATTCA-TTT-AACAA-TAATCT-TTCAAGTCA--TC-T-TCCCAA----AGGCAA-AATGCTAA-TAAA-
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA---CCTAAAAAAAT-A--------TAGG----------TT-T---TTCTTT-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAA-TTT-ATAGGGATTATATAAG-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCT--AGA-AA-GCTA--GCAAATTTTA-TA-GTT------AAC-AAAAAATGGAATA-A-TAT-GATTTTTAACA-T-A-CATT--GT-AAACTAAAAAG-ACAATAAATTAA-CTTT-GATTGG-TTATC----------------T-ATC-TCTGACACAAAACCTAAT--T--AGTTA--CCTCTATTCTA--AGTAAC-GT----TACAT-GTATT-ATGGCCTCCT---CCCCCGGTTTC-----CTACAGCCATTTC-CT---T-TCCTCGCATTTGATTTGTAAT-CTTTTGC-CACACTTTCCAAT-TTCA---AAT----TTA-----TATTat
gi|6 : agatgataA-TTTGATTTGTA-ATCTTTT-GCCACACTTTC-CAATTT--CAAATTTATATTTCCGTGTTATTGATTCC-AGA--GA-TCAAA-G--TTTAAGGACTT--GCAGATTT-TT---TTTTTTTTA--CTCA-TG-TCCAT-TTATAT-AT-CCTTGGCATCCTTCTGGAAT-C-AAC-ATGTA-GGAATATGAAAAT-------------TAC-T--AG--TA-TTTTA-GCAATTTTT-G-----ACCAA-TAAACT-TTTA--TCA--TCTT-TCCCAATTTTAGGC-A-AATGCTAA-TAAATTTAAAAA-TGT-ACA-----TTACAATCTATATA-GCATGTTA-AAATATTG-ACA-AAAtccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcAT-ATA-----TTACAATC--TATA-GCATGTT--AGATATTG-ACA--AATTT-ATTTA-TTTCCTACTTCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATATAA--AAGAGAGTT-CAATGACTT-AATACTT-GCTT-TT--CAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTAT-CATACCTTATAAC-TTATAAAGGTACTTTCCC---A-GAAACA-GCTATTTAACAC-AT-ACAT-GT-----ATAACAT-ATGAGTATC-TTGATTGCA-TATAAAATAAT-AG-T--AAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-ATTATATAGGG
gi|8 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCT--AGA-AA-TGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-A-TAT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--T-------TCT-ATACAT-GTATT-ATGGCCTCCT---CC-----TCCC-----ttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|9 : AGGGTGTCAA-------GCCA-CTTTTGAC-CCCAAAAAATATCAGGATT--ATAGGGA-------ATT-T---TTTTTCAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAA-TTTCATAGGGA-TATATAGG-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCA--AGA-AA-CCTAATGCAAATTTTG-TATTTT------AACAAAAAACTGGAGTA-A-T----A----CAACA-T-ACCAAT--GT-AAATAAAAAAGAAC-AT---TTAA-CTTT-GAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC
Alignments
lowQualScore : 1111111 111 11 111111111 111 11 11 1111111 1111 111 1 1 11 111111111 11111 11111 111 11 1111 1111 111 11111111 11111 888888888888888888888888 1 11 1 1 222222222222 111 111 111 1111 1 1111 111 11 1 11111 1 1 1111 1 11 1 11 11 22 1 111 22222 44444 111 2222222 1111 2 111 1
lowQualScore : 4444444 4 1 888 3 00 999999999 7 666 44 3 222 3 3 3 3 3 22 44 88 3 3 1 6 3 3 777 4 4 1 7 11 5 66 66 5 5 66 4 4 8 4444444 4 0 5 88 5 0000 5 222 66 4 4 4 777 4 4 0 0 5 0 5 5 5 5 11 66 777777777 2 5 5 5 888 22222 22222 5 5 000 0 77 4444 6 1111 6 111 2 2 99999999 66666 1 999999999999999999999999 0 0 0 3 8 6 6 44 3 0 6 3 666666666666 111 6 6 6 99 99 6 6 222 1 1 6 6 6 6 666 6 7 111 6 6 5555 6 99 6 6 666 6 6 6 99 99 1 3 4444 777 44 3 8 6 66666 99 6 99 6 6 7 0 6 0 8 8 0 0 6 8 8 0 5555 8 0 8 11 8 8 0 8 11 88 11 11 88 1 8 8 8 8 8 8 3 8 66 88 8 8 5 999 8 77777 8 8 8 8 00000 8 8 8 999 0 6666666 5555 0 0 0 3 5 5 5 5 888 5 5 5 66 5 5 0 55 3
lowQualScore : ....... . . ... . .. ......... . ... .. . ... . . . . . .. .. .. . . . . . . ... . . . . .. . .. .. . . .. . . . ....... . . . .. . .... . ... .. . . . ... . . . . . . . . . . .. .. ......... . . . . ... ..... ..... . . ... . .. .... . .... . ... . . ........ ..... . ........................ . . . . . . . .. . . . . ............ ... . . . .. .. . . ... . . . . . . ... . . ... . . .... . .. . . ... . . . .. .. . . .... ... .. . . . ..... .. . .. . . . . . . . . . . . . . . .... . . . .. . . . . .. .. .. .. .. . . . . . . . . . .. .. . . . ... . ..... . . . . ..... . . . ... . ....... .... . . . . . . . . ... . . . .. . . . .. .
lowQualScore : 4444444 4 9 777 3 00 666666666 3 444 22 6 777 6 6 6 6 6 33 00 66 6 6 9 7 6 6 888 4 4 9 0 99 0 99 99 0 0 11 9 4 9 7777777 4 1 0 66 0 6666 0 111 99 4 4 4 888 4 4 0 4 0 0 0 0 0 0 99 99 999999999 0 0 0 0 888 55555 55555 7 7 000 7 22 2222 7 2222 7 777 5 5 33333333 77777 0 666666666666666666666666 8 0 8 8 0 7 7 22 3 8 7 2 777777777777 777 7 7 7 22 22 7 7 777 7 0 7 7 7 7 888 7 3 777 7 7 2222 7 22 7 7 888 7 7 7 22 22 7 3 2222 222 00 3 0 7 77777 22 7 22 7 7 3 8 0 8 0 0 0 8 0 0 0 8 2222 0 6 0 00 0 0 0 0 00 88 22 00 44 4 0 0 0 0 0 0 2 0 44 88 0 0 4 888 0 88888 0 0 0 0 00000 0 0 0 444 8 6666666 0000 8 8 0 2 7 0 0 0 888 0 0 0 99 0 0 0 99 5
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
Reference ( family-2315 ) : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATT-TATTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AAACGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-ATTGA----CAACAAT-A-CATT--GT-A--CTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTAT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAAT--ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CTT-T---CT--CCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCAATTAATGCCATTA-----TAT-CAAATGTTCATTATGCATTATAACC-AAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTTATCA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-T---ATTTTTTTTATTCTCAAT-GTCCATATT-TAT-A-TCCTT-GGATCCTTCTGGAATAA-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGC-A-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTAC-ATC--TATA--CATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAACACCA-TTCTT-AAAGATAAA-TCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TTGTTCAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-AT-AAATCGC-----AT-GTATAATGAGTATC-TTGATTGCA--ATATAATAATAAGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAAATAAATAGGG
gi|10 : ATACTAATA---TAAAAGAGAT-AT-TT--GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG--ATATATAGGGgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|10 : ATAT-AGGGTTTTATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAA-TTT-ATAGGAA-AATATATG-GAATTT-ATttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|11 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--GCAAATTTTG-TA-TTT------AAC-AGAAACTGGAGCA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAAT-AT--A--TAACCCTCTTTTCTG------------T-GTACAT-GTATT-ATGGCCTCCT---CC-----TACC-----CTACAGCCATTTC-CTT-T---CCTCCCATagggacttgacaccct
gi|12 : GCTTC-ATATATCAGTA-TT-TCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-GATATGTAAGGt
gi|13 : atC-ATAAAGGCTTC-ATATATCAGTG-TT-TTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATGTAGGGtttaatagggattataatgaattataagggtgtagggatcctcaaatctatagaaaaatatagaaattcatagggacttgacaccctg
gi|13 : AATATGT-AGGGTTCAATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCCT-C----------TTT-CTAGGAA-AATATAGG-A-ATTT-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|14 : cataaaggcttcatatatcagtgttttttatcatttcgaaaaaatatcacagatttttctgCAGGGTGTCAA-------GCCA-CTTTTG-A-CCCC-AAAATAT--GGATT--ATAGGGGGGGATTAATT-T---TTTTCC-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AA-TTT-ATATGGA-TAT-T----GTAGTT-GTCCCGGAA---TTT-TGCGTTcagg
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATAC--TATA----TAT-AAGGTACTTTCC-----AGAAACA-GCTATTTAACAC-AT-AAAT-GTTATAGAT-ATAT-ATGAGTATCTTTGATTGC--TATA
gi|16 : A-TATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGA-AA-CGTA--GCAAA-TTTG-TA-TTTAAATTAAAC-AAAAACTGGAGa
gi|17 : attaaaagacttcaaattgcacaGCAGGGTG-CAA-------GCCA-CTTT--GA-CCCCAAAAATAA-AGGATT--ATGGGA--------TTT-T---TTTTTC-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTTT-ATAGGGA--ATA
gi|18 : t-AAAAAGGCTTC-ATATATCAGTG-TT-TTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AA
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTG-A-CCCCAAANGTGT-
gi|2 : tgcatGCAGGGTGTCAA-------GCCA-CTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-A--CGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-TT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-ATTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAAT-AT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAATT-ATGGCCTCCC---TC-----TTCC-----CTACAGCCATTTC-CTT-T---CCT-CCATCCTATT----ATATTTTTTC-CA-AC---CAAATGTTCA-TTAATG-CATTA-----TATTCAAATGTTCATTATGCATTATA-CCAAA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-A-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTCAAAC-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGCAA-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTACAATC--TATA-GCATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-AC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGT-AAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACC-TATAATACTAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAAT-GC-----AT-GTAT-ATGAGTATC-TTGATTGCA--ATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TG-TTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATA-ATAGGGgt
gi|3 : T-AAACTAAAAAG-AC-AT---TTCA-CTTTTGATTGA-TT--CT-GTT-CAGCTTCTTAT-ATC-TC-GACACAAA-CCCAAT-ATT-A--TAACGCTCTATTCTAC-TGT-AC-ATTT-GTACAT-GTATTTATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CCT-TGTTCCTCCCATC-TATT----AT-TTTT--------C---CAA----------------------------TCAAAT-------------------------GTTCATTATGCCATTATGTCTTATTCAGTT-T-TGG-TTGGATT-GTTCGTCTTTTCGTTGCACTTTC-CACATT--CA--------TTTCCATGTT---GATTCCCAGGATGA-TC-AA-G--TTTAAGGACTTTT-GAAGATTTATTT--ATTTGTTATATT-TCA-TGGTCCAT-TT-CAT-ATTCCTTGGG--CCTTCTAGAAT-C-AAC-A-GTATAGGATATAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTC-GCATTTATT-A-TTC-AACAAATAAACT-TTTA--TCA--TCTT----CAA----A-GC---AATGCTAAATAAAGTTAAAAAATATTGTA-----TTTCAATC--TATA-GCATGTTTT-AAATATTGCACATAAA-TTTAT----TT-CCTACTCCTTCAAAGCAAC-CCATTTCTT-AAAGATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTTTT-TTCAAGCAA-GATATG-CCAAAAGTC--AAGATACATGTATA--TCTCTTT-T--AATGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTAT-CATACC-TATA--ACTAT-AAGTAACTTTCCC-----GAAACAGGTTATTTAACACAATAAAAT-GTCGATAAC-ACAT-ATGAGTATC-TTGATTGCATTATATAA-AATA-----------------TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TT-TTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TT
gi|4 : AAAATAT-AGGATT--AT----------------T---TTTTTC-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGA-TTA-TTATGGAATATGTAGGCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCT--AGATAA-CATA--GCAAATTTTGATAGTTT------AAC-AAAAACTG---TATAT-TT-GA----CAACA-TTATCATT--GTTAAACTAAAAAG-AC-AT---AT---CTTT-GATTGGATTTTCT-GTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-ATGTA--TAACCCT--ATTCTA--TGT-ATTATTTAGTACATTGTATT-ATGGCCTCCT---CC-----TCCCTACAGCTACAGCCATTTCTCTTGT---CCTCCCAT--TATT----AT-TTTT--C-CA-AT---CAAATGTT-A-TTA-TGCCATTA-----TATT--------------------------AA-TGTTCATTATGCCATTATATCTTAT-CAGTT-TCTGG-T-GGATT-GT--GTCTTTTTGTCGCACTTTCTCAATT----A--------TTTCCATGTT---GATT-CCAGGATGAATCAAA-G--TTTAAGGAC--TT-GCAGATGTA-TTTAATTTTTTTTACTCTC--T-GTCCA--TT-TATGG-TCCTTGGG--TCGTCTGGAAT-CAAAC-ATGTA-GGGAT-TG-AAATATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTC-AAC-AA-ATACTATTTA---CACTCCCT-TCCCAA----AGGCAACAATGCT-AATAAA-TT-AAAAATA-TATAATATGTTACAATC--TATAGGCATG--TT-AA--ATTG-ACATAAATTTAATTTATTT-CCTACTCCTTAAAAGCAACTCCA-TTCTTAAAAGATAAATTCTTCATAT-T--TAAAGGA-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGATGATgggctg
gi|5 : CAGGGTGTCAA-------GC-A-CTTT-GGA-CCCCAAAA-TA--AGGATT--ATAGG---------ATT-T---TTTTT--AA-T---TATA-TAGAGGC--AAT-ATAGGGC--TTTT-TAAT--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCT--AG--AA-TGTA--ACAAAGTTTG-TA-TTT-------AC-AAAAACTGGA-TA-ATAAT-GA----CAA-A-T---CATTTGGT-AAACT--AAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--AT--A--TAACTCTCTATTCTATGTGT-AC-ATTT-AT-CAT-GTATT-A-GGCCT-CT---CC-----CTCC-----C-AC-GCCAATTT-CCT-T---CCTCCTAT-TTATT----TT-TTTTTTCTCA-AT---CAAATGTTCA-TT-ATGCCATTATATCTTATTCAGTTTTTCGGTTGGTATTGT--------TG-TCATTTT--TGTCACAGCTT-TCCAATT-TCAAA-TTG--------------------------TC-CA--TT--C--------------ATGTT---GATT-CCAGGATGA-TCAAATGTTTTTAAGGAC--TTGGCAGA---A-TT--TTTTTTTTAATCTTCA-T-GTCC-T-TT-TAT-A-TCCTT-GGATCCTTCTGGAAT-C-AACAATGTT-AGGA-ATGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTA-GCAATTATTCA-TTT-AAC-AATAATCT-TTCAAGTCA--TC-T-TCCCAA----AGGCAA-AATGCT-AATAAA-
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA---CCTAAAAAAAT-A--------TAGG----------TT-T---TTCTTT-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAA-TTT-ATAGGGATTATATAAG-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCT--AGA-AA-GCTA--GCAAATTTTA-TA-GTT------AAC-AAAAAATGGAATA-AT-AT-GATTTTTAACA-T-A-CATT--GT-AAACTAAAAAG-ACAATAAATTAA-CTTT-GATTGG-TTATC----------------T-ATC-TCTGACACAAAACCTAAT--T--AGTTA--CCTCTATTCTA--AGTAAC-GT----TACAT-GTATT-ATGGCCTCCT---CCCCCGGTTTC-----CTACAGCCATTTC-CTT-T---CCTCGCATTTGATTTGTAAT-CTTTTGC-CACACTTTCCAAT-TTCA---AAT----TTA-----TATTat
gi|6 : agatgataA-TTTGATTTGTA-ATCTTTT-GCCACACTTTC-CAATTT--CAAATTTATATTTCCGTGTTATTGATT-CCAGA--GA-TCAAA-G--TTTAAGGAC--TT-GCAGATTT--TT---TTTTTTTTA--CTCA-T-GTCCAT-TTATAT-A-TCCTTGGCATCCTTCTGGAAT-C-AAC-ATGTA-GGAATATGAAAAT-------------TAC-T--AG--TA-TTTTA-GCAATTTTT-G-----ACC-AATAAACT-TTTA--TCA--TCTT-TCCCAATTTTAGGC-A-AATGCT-AATAAATTT-AAAAATG-TACA-----TTACAATCTATATA-GCATG--TTAAAATATTG-ACA-AAAtccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcA-TATA-----TTACAATC--TATA-GCATG--TT-AGATATTG-ACA--AATTT-ATTTA-TTTCCTACTTCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATATAA--AAGAGAG-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTAT-CATACCTTATAAC-TTATAAAGGTACTTTCCC---A-GAAACA-GCTATTTAACAC-AT-ACAT-GT-----ATAACAT-ATGAGTATC-TTGATTGCA-TATAAAATAAT-AG-T--AAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-ATTATATAGGG
gi|8 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCT--AGA-AA-TGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--T-------TCT-ATACAT-GTATT-ATGGCCTCCT---CC-----TCCC-----ttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|9 : AGGGTGTCAA-------GCCA-CTTTTGAC-CCCAAAAAATATCAGGATT--ATAGGGA-------ATT-T---TTTTTCAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAA-TTTCATAGGGA-TATATAGG-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCA--AGA-AA-CCTAATGCAAATTTTG-TATTTT------AACAAAAAACTGGAGTA-AT-----A----CAACA-T-ACCAAT--GT-AAATAAAAAAGAAC-AT---TTAA-CTTT-GAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC
Alignments
lowQualScore : 1111111 111 11 111111111 111 11 11 1111111 1111 111 1 1 11 111111111 11111 11111 111 11 1111 1111 111 11111111 11111 888888888888888888888888 1 11 1 1 222222222222 111 111 111 1111 1 1111 111 11 1 11111 1 1 1111 1 11 1 11 11 22 1 111 22222 44444 111 2222222 1111 2 111 1
lowQualScore : 4444444 4 1 888 3 00 999999999 7 666 44 3 222 3 3 3 3 3 22 44 88 3 3 1 6 3 3 777 4 4 1 7 11 5 66 66 5 5 66 4 4 8 4444444 4 0 5 88 5 0000 5 222 66 4 4 4 777 4 4 0 0 5 0 5 5 5 5 11 66 777777777 2 5 5 5 888 22222 22222 5 5 000 0 77 4444 6 1111 6 111 2 2 99999999 66666 1 999999999999999999999999 0 0 0 3 8 6 6 44 3 0 6 3 666666666666 111 6 6 6 99 99 6 6 222 1 1 6 6 6 6 666 6 7 111 6 6 5555 6 99 6 6 666 6 6 6 99 99 1 3 4444 777 44 3 8 6 66666 99 6 99 6 6 7 0 6 0 8 8 0 0 6 8 8 0 5555 8 0 8 11 8 8 0 8 11 88 11 11 88 1 8 8 8 8 8 8 3 8 66 88 8 8 5 999 8 77777 8 8 8 8 00000 8 8 8 999 0 6666666 5555 0 0 0 3 5 5 5 5 888 5 5 5 66 5 5 0 55 3
lowQualScore : ....... . . ... . .. ......... . ... .. . ... . . . . . .. .. .. . . . . . . ... . . . . .. . .. .. . . .. . . . ....... . . . .. . .... . ... .. . . . ... . . . . . . . . . . .. .. ......... . . . . ... ..... ..... . . ... . .. .... . .... . ... . . ........ ..... . ........................ . . . . . . . .. . . . . ............ ... . . . .. .. . . ... . . . . . . ... . . ... . . .... . .. . . ... . . . .. .. . . .... ... .. . . . ..... .. . .. . . . . . . . . . . . . . . .... . . . .. . . . . .. .. .. .. .. . . . . . . . . . .. .. . . . ... . ..... . . . . ..... . . . ... . ....... .... . . . . . . . . ... . . . .. . . . .. .
lowQualScore : 4444444 4 9 777 3 00 666666666 3 444 22 6 777 6 6 6 6 6 33 00 66 6 6 9 7 6 6 888 4 4 9 0 99 0 99 99 0 0 11 9 4 9 7777777 4 1 0 66 0 6666 0 111 99 4 4 4 888 4 4 0 4 0 0 0 0 0 0 99 99 999999999 0 0 0 0 888 55555 55555 7 7 000 7 22 2222 7 2222 7 777 5 5 33333333 77777 0 666666666666666666666666 8 0 8 8 0 7 7 22 3 8 7 2 777777777777 777 7 7 7 22 22 7 7 777 7 0 7 7 7 7 888 7 3 777 7 7 2222 7 22 7 7 888 7 7 7 22 22 7 3 2222 222 00 3 0 7 77777 22 7 22 7 7 3 8 0 8 0 0 0 8 0 0 0 8 2222 0 6 0 00 0 0 0 0 00 88 22 00 44 4 0 0 0 0 0 0 2 0 44 88 0 0 4 888 0 88888 0 0 0 0 00000 0 0 0 444 8 6666666 0000 8 8 0 2 7 0 0 0 888 0 0 0 99 0 0 0 99 5
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
Reference ( family-2315 ) : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATT-TATTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AAACGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-ATTGA----CAACAAT-A-CATT--GT-A--CTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTAT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAAT--ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CTT-T---CT--CCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCAATTAATGCCATTA-----TAT-CAAATGTTCATTATGCATTATAACC-AAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTTATCA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-T---ATTTTTTTTATTCTCAAT-GTCCATATT-TAT-A-TCCTT-GGATCCTTCTGGAATAA-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGC-A-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTAC-ATC--TATA--CATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAACACCA-TTCTT-AAAGATAAA-TCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TTGTTCAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-AT-AAATCGC-----AT-GTATAATGAGTATC-TTGATTGCA--ATATAATAATAAGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAAATAAATAGGG
gi|10 : ATACTAATA---TAAAAGAGAT-AT-TT--GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG--ATATATAGGGgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|10 : ATAT-AGGGTTTTATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAA-TTT-ATAGGAA-AATATATG-GAATTT-ATttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|11 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--GCAAATTTTG-TA-TTT------AAC-AGAAACTGGAGCA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAAT-AT--A--TAACCCTCTTTTCTG------------T-GTACAT-GTATT-ATGGCCTCCT---CC-----TACC-----CTACAGCCATTTC-CTT-T---CCTCCCATagggacttgacaccct
gi|12 : GCTTC-ATATATCAGTA-TT-TCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-GATATGTAAGGt
gi|13 : atC-ATAAAGGCTTC-ATATATCAGTG-TT-TTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATGTAGGGtttaatagggattataatgaattataagggtgtagggatcctcaaatctatagaaaaatatagaaattcatagggacttgacaccctg
gi|13 : AATATGT-AGGGTTCAATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCCT-C----------TTT-CTAGGAA-AATATAGG-A-ATTT-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|14 : cataaaggcttcatatatcagtgttttttatcatttcgaaaaaatatcacagatttttctgCAGGGTGTCAA-------GCCA-CTTTTG-A-CCCC-AAAATAT--GGATT--ATAGGGGGGGATTAATT-T---TTTTCC-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AA-TTT-ATATGGA-TAT-T----GTAGTT-GTCCCGGAA---TTT-TGCGTTcagg
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATAC--TATA----TAT-AAGGTACTTTCC-----AGAAACA-GCTATTTAACAC-AT-AAAT-GTTATAGAT-ATAT-ATGAGTATCTTTGATTGC--TATA
gi|16 : A-TATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGA-AA-CGTA--GCAAA-TTTG-TA-TTTAAATTAAAC-AAAAACTGGAGa
gi|17 : attaaaagacttcaaattgcacaGCAGGGTG-CAA-------GCCA-CTTT--GA-CCCCAAAAATAA-AGGATT--ATGGGA--------TTT-T---TTTTTC-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTTT-ATAGGGA--ATA
gi|18 : t-AAAAAGGCTTC-ATATATCAGTG-TT-TTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AA
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTG-A-CCCCAAANGTGT-
gi|2 : tgcatGCAGGGTGTCAA-------GCCA-CTTTTGAAACCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-A--CGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-TT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-ATTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAAT-AT--A--TAACCCTCTATTCTA--TAT-AC-ATTT-GTACAT-GAATT-ATGGCCTCCC---TC-----TTCC-----CTACAGCCATTTC-CTT-T---CCT-CCATCCTATT----ATATTTTTTC-CA-AC---CAAATGTTCA-TTAATG-CATTA-----TATTCAAATGTTCATTATGCATTATA-CCAAA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCG-ACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-A-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTCAAAC-AATAAACT-TTTA--TCA--TCTTCTCCCCA----AGGCAA-AATGCT--ATAAA-CT-AAAAATA-TATA-----TTACAATC--TATA-GCATA--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-AC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGT-AAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACC-TATAATACTAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAAT-GC-----AT-GTAT-ATGAGTATC-TTGATTGCA--ATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TG-TTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATA-ATAGGGgt
gi|3 : T-AAACTAAAAAG-AC-AT---TTCA-CTTTTGATTGA-TT--CT-GTT-CAGCTTCTTAT-ATC-TC-GACACAAA-CCCAAT-ATT-A--TAACGCTCTATTCTAC-TGT-AC-ATTT-GTACAT-GTATTTATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CCT-TGTTCCTCCCATC-TATT----AT-TTTT--------C---CAA----------------------------TCAAAT-------------------------GTTCATTATGCCATTATGTCTTATTCAGTT-T-TGG-TTGGATT-GTTCGTCTTTTCGTTGCACTTTC-CACATT--CA--------TTTCCATGTT---GATTCCCAGGATGA-TC-AA-G--TTTAAGGACTTTT-GAAGATTTATTT--ATTTGTTATATT-TCA-TGGTCCAT-TT-CAT-ATTCCTTGGG--CCTTCTAGAAT-C-AAC-A-GTATAGGATATAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTC-GCATTTATT-A-TTC-AACAAATAAACT-TTTA--TCA--TCTT----CAA----A-GC---AATGCTAAATAAAGTTAAAAAATATTGTA-----TTTCAATC--TATA-GCATGTTTT-AAATATTGCACATAAA-TTTAT----TT-CCTACTCCTTCAAAGCAAC-CCATTTCTT-AAAGATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTTTT-TTCAAGCAA-GATATG-CCAAAAGTC--AAGATACATGTATA--TCTCTTT-T--AATGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTAT-CATACC-TATA--ACTAT-AAGTAACTTTCCC-----GAAACAGGTTATTTAACACAATAAAAT-GTCGATAAC-ACAT-ATGAGTATC-TTGATTGCATTATATAA-AATA-----------------TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TT-TTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TT
gi|4 : AAAATAT-AGGATT--AT----------------T---TTTTTC-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGA-TTA-TTATGGAATATGTAGGCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCT--AGATAA-CATA--GCAAATTTTGATAGTTT------AAC-AAAAACTG---TATAT-TT-GA----CAACA-TTATCATT--GTTAAACTAAAAAG-AC-AT---AT---CTTT-GATTGGATTTTCT-GTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-ATGTA--TAACCCT--ATTCTA--TGT-ATTATTTAGTACATTGTATT-ATGGCCTCCT---CC-----TCCCTACAGCTACAGCCATTTCTCTTGT---CCTCCCAT--TATT----AT-TTTT--C-CA-AT---CAAATGTT-A-TTA-TGCCATTA-----TATT--------------------------AA-TGTTCATTATGCCATTATATCTTAT-CAGTT-TCTGG-T-GGATT-GT--GTCTTTTTGTCGCACTTTCTCAATT----A--------TTTCCATGTT---GATT-CCAGGATGAATCAAA-G--TTTAAGGAC--TT-GCAGATGTA-TTTAATTTTTTTTACTCTC--T-GTCCA--TT-TATGG-TCCTTGGG--TCGTCTGGAAT-CAAAC-ATGTA-GGGAT-TG-AAATATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTC-AAC-AA-ATACTATTTA---CACTCCCT-TCCCAA----AGGCAACAATGCT-AATAAA-TT-AAAAATA-TATAATATGTTACAATC--TATAGGCATG--TT-AA--ATTG-ACATAAATTTAATTTATTT-CCTACTCCTTAAAAGCAACTCCA-TTCTTAAAAGATAAATTCTTCATAT-T--TAAAGGA-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGATGATgggctg
gi|5 : CAGGGTGTCAA-------GC-A-CTTT-GGA-CCCCAAAA-TA--AGGATT--ATAGG---------ATT-T---TTTTT--AA-T---TATA-TAGAGGC--AAT-ATAGGGC--TTTT-TAAT--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCT--AG--AA-TGTA--ACAAAGTTTG-TA-TTT-------AC-AAAAACTGGA-TA-ATAAT-GA----CAA-A-T---CATTTGGT-AAACT--AAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--AT--A--TAACTCTCTATTCTATGTGT-AC-ATTT-AT-CAT-GTATT-A-GGCCT-CT---CC-----CTCC-----C-AC-GCCAATTT-CCT-T---CCTCCTAT-TTATT----TT-TTTTTTCTCA-AT---CAAATGTTCA-TT-ATGCCATTATATCTTATTCAGTTTTTCGGTTGGTATTGT--------TG-TCATTTT--TGTCACAGCTT-TCCAATT-TCAAA-TTG--------------------------TC-CA--TT--C--------------ATGTT---GATT-CCAGGATGA-TCAAATGTTTTTAAGGAC--TTGGCAGA---A-TT--TTTTTTTTAATCTTCA-T-GTCC-T-TT-TAT-A-TCCTT-GGATCCTTCTGGAAT-C-AACAATGTT-AGGA-ATGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTA-GCAATTATTCA-TTT-AAC-AATAATCT-TTCAAGTCA--TC-T-TCCCAA----AGGCAA-AATGCT-AATAAA-
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA---CCTAAAAAAAT-A--------TAGG----------TT-T---TTCTTT-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAA-TTT-ATAGGGATTATATAAG-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCT--AGA-AA-GCTA--GCAAATTTTA-TA-GTT------AAC-AAAAAATGGAATA-AT-AT-GATTTTTAACA-T-A-CATT--GT-AAACTAAAAAG-ACAATAAATTAA-CTTT-GATTGG-TTATC----------------T-ATC-TCTGACACAAAACCTAAT--T--AGTTA--CCTCTATTCTA--AGTAAC-GT----TACAT-GTATT-ATGGCCTCCT---CCCCCGGTTTC-----CTACAGCCATTTC-CTT-T---CCTCGCATTTGATTTGTAAT-CTTTTGC-CACACTTTCCAAT-TTCA---AAT----TTA-----TATTat
gi|6 : agatgataA-TTTGATTTGTA-ATCTTTT-GCCACACTTTC-CAATTT--CAAATTTATATTTCCGTGTTATTGATT-CCAGA--GA-TCAAA-G--TTTAAGGAC--TT-GCAGATTT--TT---TTTTTTTTA--CTCA-T-GTCCAT-TTATAT-A-TCCTTGGCATCCTTCTGGAAT-C-AAC-ATGTA-GGAATATGAAAAT-------------TAC-T--AG--TA-TTTTA-GCAATTTTT-G-----ACC-AATAAACT-TTTA--TCA--TCTT-TCCCAATTTTAGGC-A-AATGCT-AATAAATTT-AAAAATG-TACA-----TTACAATCTATATA-GCATG--TTAAAATATTG-ACA-AAAtccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcA-TATA-----TTACAATC--TATA-GCATG--TT-AGATATTG-ACA--AATTT-ATTTA-TTTCCTACTTCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATATAA--AAGAGAG-TTCAATGACTT-AATACTT-GC--TT-TTCAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTAT-CATACCTTATAAC-TTATAAAGGTACTTTCCC---A-GAAACA-GCTATTTAACAC-AT-ACAT-GT-----ATAACAT-ATGAGTATC-TTGATTGCA-TATAAAATAAT-AG-T--AAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-ATTATATAGGG
gi|8 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAATAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCT--AGA-AA-TGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--T-------TCT-ATACAT-GTATT-ATGGCCTCCT---CC-----TCCC-----ttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|9 : AGGGTGTCAA-------GCCA-CTTTTGAC-CCCAAAAAATATCAGGATT--ATAGGGA-------ATT-T---TTTTTCAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAA-TTTCATAGGGA-TATATAGG-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCA--AGA-AA-CCTAATGCAAATTTTG-TATTTT------AACAAAAAACTGGAGTA-AT-----A----CAACA-T-ACCAAT--GT-AAATAAAAAAGAAC-AT---TTAA-CTTT-GAATG
blockSeqs : CTGTCAA . T AAA C TT GGGGGATTA A . CA T GAA A . A A A AT GT T T C G A C A CCG A G T G GT A AG AG T . AT T A G TAAATTA A T AA . TTTT . TAT TG T A A AAA . T A . G T A T . GT GT TGTGTAC T A T T . CCCGG TACAG T G GTT CC TGTA A TTCT C TTT G C TTAATG TATCT A GTTCATTATGCATTATACCAAA G T . . T TC C C T A CAAATTTATA ATT C A T TT TT G T TAA T C . G . A AT G A CA A T AATT G TA G G AT A A A AG CT T C TTTT AAC AA G A T ATATG TA G TT A C T T T T C T T A TTA T A C TT . G G . AG AA AC AT A A G A C A A A G T TA A . T T ATA A AG G A A . TATAG A . T ATT AAGTTA TAT G G A A T . TTT A . . CT . A T G T
blockSeqs : . . T GA . CA GA A . C . GAA . . . . . G C . . . G T . . . . . T A C . . . . . . A . T T . . A . . . AC . . . . . . . . . C . . . . T . CTGTAC T . . . . . . . . . TT . . TTC . . G C TTATGC . A TTTCGGTTGGTATTGT G T . . . T T C . C CA . . . . . . . . A T C . . . . GG G A A . . T . . . . CA . . . . . T . . AA A T . . . . . . . . T T . . C . . . AA . A . . . . G . . A CA . . T . . . . . . G . TA A . . . AC . A . . . . CGATA . . . AT ATAA AT . G . . . . T . . . . . . T A T
blockSeqs : . . T GA . . G . . C . . . . . . . . T . . . T . . . . . . T G . . . . . . . T . . T . . T . . . A . . . . . . . . . . . . . . . . TGTATT T . . . . . . . . . C . . TGC . . G C TTATGC . T AA G C . . . A . C . A CA . . . . . . . . A C T . . . . A G A C . . A . . . . A . . . . . C . . AA A . . . . . . . . . T A . . C . . . T . . . . . . . . . A CA . . T . . . . . . G . T A . . . A . A . . . . . . . . T AGT TA . A . . . . C . . . . . . . A T
blockSeqs : . . T AC . . G . . C . . . . . . . . T . . . G . . . . . . T A . . . . . . . G . . T . . T . . . A . . . . . . . . . . . . . . . . AGTAAC T . . . . . . . . . T . . C . . . . AAT . . . . . . . . . . . . A A . . . . . . . . T T C . . . . A G . C . . T . . . . A . . . . . T . . A A . . . . . . . . . . . . . . . . . T . . . . . . . . . . AA . . A . . . . . . . . . . . . . . . . . . . . . . . . A A . . . . . . . . . . . . . . . A T
blockSeqs : . . T A . . A . . C . . . . . . . . T . . . T . . . . . . T A . . . . . . . T . . T . . A . . . A . . . . . . . . . . . . . . . . TATAC C . . . . . . . . . . . . . . . . . . . . . . . . . . C . . . . . . . . . . . . . . . A . . C . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . A .
blockSeqs : . . T A . . G . . T . . . . . . . . T . . . T . . . . . . T . . . . . . . . T . . T . . A . . . A . . . . . . . . . . . . . . . . T . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . G . . C . . . . . . . . C . . . T . . . . . . . . . . . . . . . T . . T . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . A . . . . . . . . . . . . . . T . . . G . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . T . . .
blockSeqs : . . . . . . . . . . . . . . . . . . G . . .
blockSeqs : . .
blockSeqCons : A** *** ** ** T****** TGTAC**** *** TTATGC** TTCGTGCATTG************* T* CA********** C** AA* A* ** A* A** A**** CGG** AGA**** A*** A*
originalCons : GCAGGGTGTCAA-------GCCA-CTTTTGAA-CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTA--TGT-AC-ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCA-TTAATGCCATTA-----TATTCAAATGTTCGTTATGCATTATA-CC-AA-TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCT-AATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT-AAAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATACTAT-AAGGTACTTTCCC---AGGAAACA-GCTATTTAACAC-AT-AAAT-GT-----AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAAG-TTAAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
finalCons : GCAGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAATAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-AT--A--TAACCCTCTATTCTATGTAC----ATTT-GTACAT-GTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-T---CCTCCCATCCTATT----AT-TTTTTTC-CA-AC---CAAATGTTCATTATGC--CATTA-----TATTCAAATTTCGTGCATTG-------------TGTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTCTTTT-GTCGCACTTTC-CAATTTCA----------TTTCCATGTT---GATT-CCAGGATGA-TCAAA-G--TTTAAGGAC--TT-GCAGATTTA-TT--ATTTTTTTTATTCTCA-T-GTCCAT-TT-TAT-A-TCCTTGGGATCCTTCTGGAATC--AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AAC-AATAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCTA-ATAAA-TT-AAAAATA-TATA-----TTACAATC--TATA-GCATG--TT-AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCA-TTCTT-AAAGATAAATTCTTCATAT-T--AAGAGGA-TTCAATGACTTAAATACTT-GC--TT-TTCAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT--AAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAAA-GTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAA--CTAT-AAGGTACTTTCCCA----GAAACA-GCTATTTAACAC-AT-AAAT-GTCGG--AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATAGA----AAGAGATA---TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTGA-ATATATAGGG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111111 11 11 111111111 111 11 11 1111111 1111 111 1 1 11111111 11111 11111 11 1111111 111 22222 1 444444444444444444444444444444444444 1 11111 1 222222222222 111 11 111 111 1111 1 1111 1 11111 11 1 1 1 1111 1 11 11 11 11 1 22222 222222 4444444 111 4444444 22222 2 111 1
lowQualScore : 4444444 4 22 4 3 3 00 777777777 7 666 44 3 222 3 3 3 3 3 22 44 88 3 3 1 6 3 3 777 4 4 1 7 11 5 66 66 5 5 66 4 4 8 4444444 4 0 5 88 5 0000 5 222 66 4 4 4 777 4 4 0 0 5 0 5 5 5 9999 5 66 99999999 2 5 5 5 888 22222 22222 5 5 0 77 7777777 3 6 0 3 8 222 0 00000 0 666666666666666666666666666666666666 0 11 8 6 00000 6 6 0 6 3 666666666666 111 6 6 6 99 55 999 1 1 6 6 6 6 6 6 6 7 111 6 6 5555 6 99 6 6 666 6 6 6 99 99 1 3 4444 7 6 7 6 3 8 6 66666 99 6 55 6 7 5 88 8 0 0 6 8 8 0 5555 8 0 8 8 11 8 3 8 11 8 0 11 11 99 1 8 8 8 8 8 8 3 8 66 88 8 8 5 55555 8 000000 8 8 8 0 6666666 8 8 8 999 5 4444444 55555 0 0 0 3 5 5 5 5 888 5 5 5 66 5 5 0 55 3
lowQualScore : ....... . .. . . . .. ......... . ... .. . ... . . . . . .. .. .. . . . . . . ... . . . . .. . .. .. . . .. . . . ....... . . . .. . .... . ... .. . . . ... . . . . . . . . . .... . .. ........ . . . . ... ..... ..... . . . .. ....... . . . . . ... . ..... . .................................... . .. . . ..... . . . . . ............ ... . . . .. .. ... . . . . . . . . . . ... . . .... . .. . . ... . . . .. .. . . .... . . . . . . . ..... .. . .. . . . .. . . . . . . . .... . . . . .. . . . .. . . .. .. .. . . . . . . . . . .. .. . . . ..... . ...... . . . . ....... . . . ... . ....... ..... . . . . . . . . ... . . . .. . . . .. .
lowQualScore : 4444444 4 22 4 3 3 00 444444444 3 444 22 6 777 6 6 6 6 6 33 00 66 6 6 9 7 6 6 888 4 4 9 0 99 0 99 99 0 0 11 9 4 9 7777777 4 1 0 66 0 6666 0 111 99 4 4 4 888 4 4 0 4 0 0 0 0 0 0000 0 99 66666666 0 0 0 0 888 55555 55555 7 7 7 22 8888888 2 7 8 2 0 222 8 00000 6 444444444444444444444444444444444444 0 66 0 7 00000 7 7 8 7 2 777777777777 777 7 7 7 22 88 333 7 0 7 7 7 7 7 7 7 3 777 7 7 2222 7 22 7 7 888 7 7 7 22 22 7 3 2222 3 7 3 7 3 0 7 77777 22 7 88 7 3 8 88 0 0 8 0 0 0 8 2222 0 6 0 0 00 0 2 0 00 0 8 22 00 00 4 0 0 0 0 0 0 2 0 44 88 0 0 4 88888 0 888888 0 0 0 8 6666666 0 0 0 444 6 6666666 00000 8 8 0 2 7 0 0 0 888 0 0 0 99 0 0 0 99 5
consensus : GCAGGGTGTCAA-------GCCA-CTTTTGA--CCCC-AAAAA-TAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-A--T-A--TAACCCTCTATTCTA--TGT-A-CATTT-GTACA-TGTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-TCCTCCCATCCTATT----AT-TTTTTTC-CAACCAAATGTTCA-TT-A-TGCCATTA-----TATTCAAATGTTC---GTT--GCATT-------AT--------GTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTC-TTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATG-ATCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCTAA-TAAA-TTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATGTT--AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGTA-AAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATAC-TAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAATGT--CG---AT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATA-AGTT-AAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
Reference ( family-2315 ) : GCAGGGTGTCAA-------GCCA-CTTTTGA--CCCC-AAAAA-TAT-AGGATT--ATAGGG--------ATT-T---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AA-CGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-A--T-A--TAACCCTCTATTCTA--TGT-A-CATTT-GTACA-TGTATT-ATGGCCTCCT---CC-----TTCC-----CTACAGCCATTTC-CTT-TCCTCCCATCCTATT----AT-TTTTTTC-CAACCAAATGTTCA-TT-A-TGCCATTA-----TATTCAAAT-TTC---GT---GCATT-------GT--------GTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTC-TTTT-GTCGCACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATG-ATCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-C-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTT-TCCCAA----AGGCAA-AATGCTAA-TAAA-TTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATGTT--AAATATTG-ACATAAATTTTATTTA-TT-CCTACTCCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAAATGTATA--TCTCTTTGT--AAAGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATA--AC-TAT-AAGGTACTTTCCC---AG-AAACA-GCTATTTAACAC-AT-AAATGT--CG--GAT-ATAT-ATGAGTATC-TTGATTGCA-TATATAATAATA-G----AAAGAGA-TA--TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATATAGGG
gi|1 : GCAGGGTGTCAA-------GCCAACTTTTGAAACCCC-AAAAA-TAT-AGGATT--ATAGGG--------ATT-TATTTTTTTC-AA-T---T-TAATAG-GGC-AA-T-ATAGGGAC-TTTT-TAAAATTAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-AAACGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-ATTGA----CAACAAT-A-CATT--GT-A--CTAAAAAG-AC-AT---TTAAACTTT-GATTGGATTTTCTTGTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAATTA--T-A--TAACCCTCTATTCTA--TAT-A-CATTT-GTACA-TGAAT--ATGGCCTCCCATCCC-----TTCC-----CTACAGCCATTTC-CTT-TCT--CCATCCTATT----AT-TTTTTTC-CAACCAAATGTTCAATT-AATGCCATTA-----TAT-CAAATGTTC---ATTATGCATT-------ATAACCAAATGTTCATTAT-CCATTATATCTTATTCAGTTATCTGAATTGGATT-GTT-GTC-TTTT-GTCG-ACTTTC-CAATTTATCA--------TTTCCATGTT---GATTCC-AGGATG-ATCAAA-G--TTTAAGGACTT--GCAGATTTAT---ATTTTTTTTATTCTCAATG-TCCATATT-TAT-AT-CCTT-GGATCCTTCTGGAATAA-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTC-AACAA-TAAACT-TTTA--TCA--TCTTCTCCCCA----AGGC-A-AATGCT-A-TAAA-CTAAAAA-TAT-ATA-----TTAC-ATC--TATA--CATATT--AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGCAACACCATT-CTT-AAAGATAAA-TCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTTGTT--CAA-CAAGGATATGCCCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTAAAAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGATAATCAATAA-GCATGGCTTAATAGTTTTGCTAACCCTAAGTACACCAGATAAGAGTAT-CATACCTTATAATAC-TAT-AAGGTACTTTCCCCAAAGAAAACA-GCTATTTAACAC-AT-AAA--T--CG--CAT-GTATAATGAGTATC-TTGATTGCA--ATATAATAATA-AGTTTAAAGAGATTATCTTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TTGTTT---ATCACTTTGG-AAATAATAA--TCAAC-AGA-TTTTTCTGAAATAAATAGGG
gi|10 : ATACTAATATA----AAAGAGA-TA--TTT-GCATA-TTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTCTG--ATATATAGGGgtttttatagggaattttaatgaattaatacgggagatataggaattcct
gi|10 : A-TAT-AGGGTTTTATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCT--------CAAA-TTT-ATAGGAA-AATATATG-GAATTT-ATttttatagggattttaatgaattatagggaaaatatagggatctcaaatttataggaaaatatatggaatttatagggacttgacaccct
gi|11 : atactaatataaaagagatatttgcatattgatgatccaaaaaggcttcatatatcagtgtttttatcacttcggaaaaatatcacagattttttctgat--GCAAATTTTG-TA-TTT------AAC-AGAAACTGGAGCA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-A---TCTGACACAAAACCCAAT-A--T-A--TAACCCTCTTTTCTG------------T-GTACA-TGTATT-ATGGCCTCCT---CC-----TACC-----CTACAGCCATTTC-CTT-TCCTCCCATagggacttgacaccct
gi|12 : GCTTC-ATATATCAGTA-TT-TCT---ATCACTTCGGAAAA-AAT-A--T---C-AGA-TTTTTCTG-GATATGTAAGGt
gi|13 : atC-ATAAAGGCTTC-ATATATCAGTG-TT-TTTT--ATCATTTCGA-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATATGTAGGGtttaatagggattataatgaattataagggtgtagggatcctcaaatctatagaaaaatatagaaattcatagggacttgacaccctg
gi|13 : AATA-TGT-AGGGTTCAATAGGG--------ATT-T---T------AA-TGAAT-TA-TAG-GGA-AAAT-ATAGGGA--TCCT-C----------TTT-CTAGGAA-AATATAGG-A-ATTT-Attcaatagggattttaatgaattatagggaaaatatagggatcctctttctaggaaaatataggaatttacagg
gi|14 : cataaaggcttcatatatcagtgttttttatcatttcgaaaaaatatcacagatttttctgCAGGGTGTCAA-------GCCA-CTTTTGA--CCCC--AAAA-TAT--GGATT--ATAGGGGGGGATTAATT-T---TTTTCC-AATT---T-TA-TAC-GGC-AAATAATAGGGAATTTCT-TAAA--T-AA-TTT-ATATGGA-TAT-T----GTAGTT-GTCCCGGAA---TTT-TGCGTTcagg
gi|15 : -GCATGGCTTAA--GTTTTGCT-ACC-TAAGTACACCAGATAAGAGTATTCATAC--TATA-----TAT-AAGGTACTTTCC----AG-AAACA-GCTATTTAACAC-AT-AAATGTTATA--GAT-ATAT-ATGAGTATCTTTGATTGC--TATA
gi|16 : A-TATAGAAG-GTATTT-ATT---GAAGAGTTT-TGTGT--GAAAGTCTACTGTTT--CAA--GCCTAGAGA-AA-CGTA--GCAAA-TTTG-TA-TTTAAATTAAAC-AAAAACTGGAGa
gi|17 : attaaaagacttcaaattgcacaGCAGGGTG-CAA-------GCCA-CTTT-GA--CCCC-AAAAA-TAA-AGGATT--ATGGGA--------TTT-T---TTTTTC-AA-T---T-TA-TA--GGC--AAT-ATAGGGA--TTTT---AA--TAAATTTT-ATAGGGA--ATA
gi|18 : t-AAAAAGGCTTC-ATATATCAGTG-TT-TTTTTTCTCAATTCGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AA
gi|19 : CAGGGTGTCAA-------GCCA-CTTTTGA--CCCC-AAANG-TGT-
gi|2 : tgcatGCAGGGTGTCAA-------GCCA-CTTTTGAAACCCC-AAAAA-TAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-TAAA--TAAA-TTT-ATATGGA-TA-ATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAAAGTCTACTGTTT--C-A--GCCT--AGA-A--CGTA--AGAACATTTG-TA-TT-------AAC-AAAAACTGGAGTA-AA-TT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-ATTTCT-GTT-CAGCT-CTTAT-ATC-TCTGACACTAAACCCAAT-A--T-A--TAACCCTCTATTCTA--TAT-A-CATTT-GTACA-TGAATT-ATGGCCTCCC---TC-----TTCC-----CTACAGCCATTTC-CTT-TCCT-CCATCCTATT----ATATTTTTTC-CAACCAAATGTTCA-TTAA-TG-CATTA-----TATTCAAATGTTCATTAT---GCATTATACCAAAT--------GTTCATTATGCCATTATATCTTATTCAGTT-TCTGA-TTGGATT-GTT-GTC-TTTT-GTCG-ACTTTC-CAATTT--CA--------TTTCCATGTT---GATTCC-AGGATG-ATCAAA-G--TTTAAGGACTT--GCAGATTTATT--ATTTTTTTTATTCTCA-TG-TCCAT-TT-TAT-AT-CCTTGGGATCCTTCTGGAAT-A-AAC-ATGTA-GGGATATGAAAATATAAAAAAAA---TAC-T--AGTATA-TTTTC-GCAATTATT-A-TTCAAACAA-TAAACT-TTTA--TCA--TCTTCTCCCCA----AGGCAA-AATGCT-A-TAAA-CTAAAAA-TAT-ATA-----TTACAATC--TATA-GCATATT--AAATATTG-ACATAAATTTTATTTA-TT-CCTA-TCCTTAAAAGC-AC-CCATT-CTT-AAAGATAAATTCTTCATAT-T--AAGAGGATT-CAATGACTTAAATACTT-GCTT-TT--CAA-CAAGGATATG-CCAAA--TC-AAAGATAACTGTATA--TCTCTTTGTA-AAAGTC-T-TTCTAATA-ACATG-AGT-AT-GTGAT-ATCAATAA-GCATGGCTTAA-AGTTTTGCT-ACCCTAAGTACACCAGATAAGAGTAT-CATACC-TATAATAC-TAT-AAGGTACTTTCCC---AGAAAACA-GCTATTTAACAC-AT-AAATGC-------AT-GTAT-ATGAGTATC-TTGATTGCA--ATATAATAATA-AGTT-AAAGAGATTAT-TTTTGCATAGTTGATGATCC-AAAAAGGCTTC-ATATATCAGTG-TG-TTT---ATCACTTTGG-AAA-AAT-A--TC-AC-AGA-TTTTTCTG-AATA-ATAGGGgt
gi|3 : T-AAACTAAAAAG-AC-AT---TTCA-CTTTTGATTGA-TT--CT-GTT-CAGCTTCTTAT-ATC-TC-GACACAAA-CCCAAT-A--TTA--TAACGCTCTATTCTAC-TGT-A-CATTT-GTACA-TGTATTTATGGCCTCCT---CC-----TTCC-----CTACAGCCATT----------TCCC------TT----GT-TCCTC-C-CATCTA-----TTA-TT-T-TTCCA---------AT-CAAAT----------------------------------GTTCATTATGCCATTATGTCTTATTCAGTT-T-TGG-TTGGATT-GTTCGTC-TTTTCGTTGCACTTTC-CACATT--CA--------TTTCCATGTT---GATTCCCAGGATG-ATCAA--G--TTTAAGGACTTTTGAAGATTTATTT-ATTTGTTATATT-TCA-TGGTCCAT-TT-CAT-ATTCCTTGGG--CCTTCTAGAAT-C-AAC-A-GTATAGGATATAAAATTATAAAAAAAA---AATGT--AGTATA-TTTTC-GCATTTATT-A-TTC-AACAAATAAACT-TTTA--TCA--TCTT----CAA----AG-CAA---TGCTAAATAAAGTTAAAAAATATTGTA-----TTTCAATC--TATA-GCATGTTTTAAATATTGCACATAAATTT-ATTT-----CCTACTCCTTCAAAGCAAC-CCATTTCTT-AAAGATAAATTCTTCATAC-TTAAAGAGGATTTCAACGACTTAAATACTTCGCTT-TTTTCAAGCAAG-ATATG-CCAAAAGTC-AA-GATACATGTATA--TCTCTTT-T--AATGTC-T-TTCTACTA-ACATG-AGT-AT-GTGATGATCAATAATGCATGTCT--A-AGTTTTGCT-ACCCTAAGTACACCAGATTAGAGTAT-CATACC-TATA--AC-TAT-AAGTAACTTTCCC----G-AAACAGGTTATTTAACACAATAAAATGT--CGATAAC-ACAT-ATGAGTATC-TTGATTGCATTATATA----------------AAA-TA--TTTTGC-TA-TT-ATGATCCAAAAAAGGCTTC-AGTTATCAGTG-TT-TTTC--ATCACTTCGG-AAA-AAT-ACTTC-ACAAGA-TT
gi|4 : AAAA-TAT-AGGATT--AT----------------T---TTTTTC-AA-A---T-TA-TAG-GGC-AAAT-ATAGGGAG-TTTT-TAAA--TAGA-TTA-TTATGGAATATGTAGGCGTATCT-ATT---GAAG-GTTTGTGTGT--GAAATTCTCCTGTTTGTC-AAGGCCT--AGATAA-CATA--GCAAATTTTGATAGTTT------AAC-AAAAACTG---TATAT-TT-GA----CAACA-TTATCATT--GTTAAACTAAAAAG-AC-A-----TAT-CTTT-GATTGGATTTTCT-GTTGCAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-ATGT-A--TAACC--CTATTCTA--TGT-ATTATTTAGTACATTGTATT-ATGGCCTCCT---CC-----TCCCTACAGCTACAGCCATTTCTCTTGTCCTCCCAT--TATT----A---TTTTTC-CAATCAAATGTT-A-TT-A-TGCCATTA-----TATT-AA---------------------------T--------GTTCATTATGCCATTATATCTTA-TCAGTT-TCTGG--TGGATT-G-T-GTCTTTTT-GTCGCACTTTCTCAATT----A--------TTTCCATGTT---GATTCC-AGGATGAATCAAA-G--TTTAAGGACTT--GCAGATGTATTTAATTTTTTTTACTCTC--TG-TCCA--TT-TATGGT-CCTTGGG--TCGTCTGGAAT-CAAAC-ATGTA-GGGAT-TG-AAATATAAAAAAAAAATTAC-TTAAGTATAGTTTTCGGCAATTATT-ATTTC-AACAA--ATACTATTTA---CACTCCCT-TCCCAA----AGGCAACAATGCTAA-TAAA-TTAAAAA-TAT-ATAATATGTTACAATC--TATAGGCATGTT--AA--ATTG-ACATAAATTTAATTTATTT-CCTACTCCTTAAAAGCAACTCCATT-CTTAAAAGATAAATTCTTCATAT-T--TAAAGGATT-CAATGACTT-AATACTT-GCTT-TT--CAA-CAAGAATATG--CAAA--TC-AAAGATACATGTATAATTCTCTTTGT--AATGTCGTATTCTACTA-AGACG-AGT-ATAGTGATGATgggctg
gi|5 : CAGGGTGTCAA-------GC-A-CTTTGGA--CCCC-AAAA--TA--AGGATT--ATAGG---------ATT-T---TTTTT--AA-T---TATA-TAGAGGC--AAT-ATAGGGC--TTTT-TAAT--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTG-TGAAAGTCCTACTGTTT--C-A--GCCT--AG--AA-TGTA--ACAAAGTTTG-TA-TTT-------AC-AAAAACTGGA-TA-ATAAT-GA----CAA-A-T---CATTTGGT-AAACT--AAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTTCCAGCT-CTTATAATCTTCTGACACAAAACCCAA--A--T-A--TAACTCTCTATTCTATGTGT-A-CATTT-AT-CA-TGTATT-A-GGCCT-CT---CC-----CTCC-----C-AC-GCCAATTT-CCT-TCCTCCTAT-TTATT----TT-TTTTTTCTCAATCAAATGTTCA-TT-A-TGCCATTATATCTTATTCAGTT-TTTCG-GTTG-GTATT-------GT--------TGTCATTTT--TGTCACAGCTT-TCCAATT-TCAAA-TTG---------------------------TC-CA--TT--C--------------ATGTT---GATTCC-AGGATG-ATCAAATGTTTTTAAGGACTTG-GCAGA---ATT--TTTTTTTTAATCTTCA-TG-TCC-T-TT-TAT-AT-CCTT-GGATCCTTCTGGAAT-C-AACAATGTT-AGGA-ATGAAAATATAAAAAAGA----AT-T--AGTATA-TTTTA-GCAATTATTCA-TTT-AACAA-TAATCT-TTCAAGTCA--TC-T-TCCCAA----AGGCAA-AATGCTAA-TAAA-
gi|6 : GCAGGGTGTCAACTGTCAAGCCA-CTTTTGA--CCTA-AAAAAATAT-AGG--------------------TT-T---TTCTTT-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTT-CAAA--TAAA-TTT-ATAGGGATTATATAAG-GTTTTT-ATT---GAAG-GTTT-TGTGTTG-AAAGTCTACTGTTT--C-A--GCCT--AGA-AA-GCTA--GCAAATTTTA-TA-GTT------AAC-AAAAAATGGAATA-AT-AT-GATTTTTAACA-T-A-CATT--GT-AAACTAAAAAG-ACAATAAATTAA-CTTT-GATTGG-TTATC----------------T-ATC-TCTGACACAAAACCTAAT----T-AGTTA--CCTCTATTCTA--AGTAA-CGT----TACA-TGTATT-ATGGCCTCCT---CCCCCGGTTTC-----CTACAGCCATTTC-CTT-TCCTCGCATTTGATTTGTAAT-CTTTTGC-CAat
gi|6 : agatgataA-TTTGATTTGTA-ATC-TTTT-GCCACACTTTC-CAATTT--CAAATTTATATTTCCGTGTTATTGATTCC-AGA--G-ATCAAA-G--TTTAAGGACTT--GCAGATTT-TT---TTTTTTTTA--CTCA-TG-TCCAT-TTATAT-AT-CCTTGGCATCCTTCTGGAAT-C-AAC-ATGTA-GGAATATGAAAAT-------------TAC-T--AG--TA-TTTTA-GCAATTTTT-G-----ACCAA-TAAACT-TTTA--TCA--TCTT-TCCCAATTTTAGGC-A-AATGCTAA-TAAATTTAAAAA-TGT-ACA-----TTACAATCTATATA-GCATGTTA-AAATATTG-ACA-AAAcactttccaatttcaaatttatatttccgtgttattgattccagagatcaaagtttaaggacttgcagatttttttttttttactcatgtccatttatatatccttggcatccttctggaatcaacatgtaggaatatgaaaattactagtattttagcaatttttgaccaataaacttttatcatctttcccaattttaggcaaatgctaataaatttaaaaatgtacattacaatctatatagcatgttaaaatattgacaaaa
gi|7 : agatgatagcagggtgtcaactgtcaagccacttttgacctaaaaaaatataggtttttctttaatttatagggcaaatatagggattttcaaataaatttatagggattatataaggtttttattgaaggttttgtgttgaaagtctactgtttcagcctagaaagctagcaaattttatagttaacaaaaaatggaataatatgatttttaacatacattgtaaactaaaaagacaataaattaactttgattggttatctatctctgacacaaaacctaattagttacctctattctaagtaacgttacatgtattatggcctcctcccccggtttcctacagccatttcctttcctcgcAT-ATA-----TTACAATC--TATA-GCATGTT--AGATATTG-ACA--AATTT-ATTTA-TTTCCTACTTCTTAAAAGCAAC-CCATT-CTT-AAAGATAAATTCTTCATATAA--AAGAGAGTT-CAATGACTT-AATACTT-GCTT-TT--CAA-CAA-GATATG-CCAAA--TCAAAAGATAAATGTATA--TCTCTTTGT--AAAGTA-T-TTCTACTACACATGAAGTAAT-GTGATGATCAATAA-GCATGGCTT-A-AGTTTTG-T-A-CCTGAGTACACCAGATAAGAGTAT-CATACCTTATA--ACTTATAAAGGTACTTTCCC---AG-AAACA-GCTATTTAACAC-AT-ACATGT-------ATAACAT-ATGAGTATC-TTGATTGCA-TATAAAATAATA-G----TAAGAGATTA--TTTTGCATA-TTAATGATTC-AAAAAGGCTTCAATATATCAGTGTTT-TTT---ATCACTTCGG-AAA-AAT-A--TC-AC-AGATTTTTTTTG-ATTATATAGGG
gi|8 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCC-AAAAA-TAT-AGGATT--ATAGGG--------ATTAT---TTTTTC-AA-T---T-TA-TAG-GGC-AAAT-ATAGGGA--TTTTGTAAA--TAAA-TTT-ATATGGA-TATATAGG-GTATTT-ATT---GAAG-GTTT-TGTGTTGAAA-GTCTACTGTTT--C-A--GCCT--AGA-AA-TGTA--GCAAATTTTG-TA-TTT------AAC-AAAAACTGGAGTA-AT-AT-GA----CAACA-T-A-CATT--GT-AAACTAAAAAG-AC-AT---TTAA-CTTT-GATTGG-TTTTCT-GTC-CAGCT-CTTAT-ATC-TCTGACACAAAACCCAAT-A--T-A--TAACCCTCTATTCTA--T-------TCT-ATACA-TGTATT-ATGGCCTCCT---CC-----TCCC-----ttttataagggattttaatgattataggcgaaaataatagggatcccaactttataggaaaatagggattttatagggacttgacaccct
gi|9 : AGGGTGTCAA-------GCCA-CTTTTGA--CCCCAAAAAA-TATCAGGATT--ATAGGGA-------ATT-T---TTTTTCAAA-T---T-TA-TAG-GGCAAAAT-ATAGGGA--TTTT-TAAAT-TAAA-TTTCATAGGGA-TATATAGG-GTTTTTAATT---GAAG-GTTT-TGTGTTG-AAAGTTTACTGTTTC-C-A--GTCA--AGA-AA-CCTAATGCAAATTTTG-TATTTT------AACAAAAAACTGGAGTA-AT-----A----CAACA-T-ACCAAT--GT-AAATAAAAAAGAAC-AT---TTAA-CTTT-GAATG
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|20 ): AAATATAGGAATTTATAGGGACTTGACACCCC