lowQualScore : 1111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111 1111111111111111111111111111 111111111111111111111111111111111111 11111111111111111 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 11111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111111111 333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 22222222 111111 3333333333333333333333333333333333333333333333333333333333333 444 00000000000000000000000000000000000000000000000 4444 3333 2 11 1 11 1 4 1 1111111111111111111111111111 11 111 33333 5555555555555555 1 222 22 444444444444444444 22 333333333333333333333333333333333333 1 11 111 44444444444444444 1111111111 77777777777777777777777777777777 33 11 33 1 22222222 1 5555555555555555555555555555555 1 33 1 1 222 44444444444 1 1 222 11 22 111 1 22 3333 33333333333 111111 66666666666666 111 22 11 1 444 1 3333 1 22 111 33333333333 333333333 2 444444444 11 22222 11 11 555555555555 222222 4444444444444444444444444 1 1 2222 66666666666666666 1 222 11 1 2 11 4 111111 111 33 2222222222 333 2222222 3 11111111 11 1 11 4444444444444 33 111111 11111 3333333 8888888888 1 333 44444 2 1 3333 2 1 2 44444 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 4 7777777777777 4 77777777 55 666666 55 2 4 333333 222 1 4 22 4 333333 1 3333 4 444444444444444444 1 2 333333 11 22 5555555555555555555 44444 1 22 22 1 22 888888888888888 1 222 2 1 777 4 4 8888 4 4 55 4 55 33333333333333333333333333333333333 444 11 77777777777777777777777777777777777777777777777777777777777777 4 22 444444 4 4 2 777777777777777 2222 33 333333333333333333333333333333333333 2 2 555555555555555555 1 2 2 1 444444444444444444444444444444444444444444444444444444444444444
lowQualScore : 22222222 88 777777 8 99 6 6 2 6 2 1 1 5555555555555555555555555555555555555555555555555555555555555 1 777 3 8 8 11 00000000000000000000000000000000000000000000000 3 6666 7777 0 88 5 88 5 0 7 3333333333333333333333333333 3 3 99 777 8 44444 8 5555555555555555 0 3 8 8 222 8 8 00 000000000000000000 00 777777777777777777777777777777777777 0 33 777 44444444444444444 4444444444 7 6 7 11111111111111111111111111111111 11 44 7 33 0 22222222 0 7777777777777777777777777777777 0 33 3 3 333 99999999999 3 0 3 777 33 33 999 0 33 9999 66666666666 44 6 6 3 888888 3 55555555555555 3 444 00 3 33 0 3 111 8 0 2222 0 33 3 111 55555555555 888 888888888 5 8 5 8 111111111 8 11 33333 66 11 333333333333 333333 1 6 88 7777777777777777777777777 0 0 1111 11111111111111111 2 0 111 22 0 3 88 0 77 99 2 666666 22 555 5 0 66 5 0000000000 2 000 9999999 2 2 5 66 55555555 888 6 77 1 33 4444444444444 3 22 0 0 0 8 22 8 8 999999 8 77777 0 7777777 4444444444 8 7 3 6 6 555 55 2 77777 0 5 6 3333 0 5 3 88888 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 6 0 5555555555555 0 6 22222222 55 666666 55 6 2 0 0 777777 888 4 5 0 11 6 0 666666 4 5 8888 2 0 3 666666666666666666 5 2 2 0 777777 88 6 22 9999999999999999999 11111 5 77 2 55 3 5 77 111111111111111 5 222 0 3 7 000 0 0 7777 0 6 0 55 0 55 22222222222222222222222222222222222 555 22 6 22222222222222222222222222222222222222222222222222222222222222 6 0 11 333333 6 0 0 3 4 111111111111111 8888 00 111111111111111111111111111111111111 0 0 222222222222222222 55 5 0 0 5 444444444444444444444444444444444444444444444444444444444444444
lowQualScore : ........ .. ...... . .. . . . . . . . ............................................................. . ... . . . .. ............................................... . .... .... . .. . .. . . . ............................ . . .. ... . ..... . ................ . . . . ... . . .. .................. .. .................................... . .. ... ................. .......... . . . ................................ .. .. . .. . ........ . ............................... . .. . . ... ........... . . . ... .. .. ... . .. .... ........... .. . . . ...... . .............. . ... .. . .. . . ... . . .... . .. . ... ........... ... ......... . . . . ......... . .. ..... .. .. ............ ...... . . .. ......................... . . .... ................. . . ... .. . . .. . .. .. . ...... .. ... . . .. . .......... . ... ....... . . . .. ........ ... . .. . .. ............. . .. . . . . .. . . ...... . ..... . ....... .......... . . . . . ... .. . ..... . . . .... . . . ..... ............................................................................................................................................. . . ............. . . ........ .. ...... .. . . . . ...... ... . . . .. . . ...... . . .... . . . .................. . . . . ...... .. . .. ................... ..... . .. . .. . . .. ............... . ... . . . ... . . .... . . . .. . .. ................................... ... .. . .............................................................. . . .. ...... . . . . . ............... .... .. .................................... . . .................. .. . . . . ...............................................................
lowQualScore : 66666666 88 888888 0 22 7 7 8 7 5 7 4 4444444444444444444444444444444444444444444444444444444444444 4 888 0 0 0 44 66666666666666666666666666666666666666666666666 2 3333 0000 0 00 5 00 0 0 0 5555555555555555555555555555 2 2 55 555 8 00000 0 2222222222222222 0 2 0 0 000 0 0 77 333333333333333333 77 888888888888888888888888888888888888 0 88 555 22222222222222222 0000000000 3 7 3 00000000000000000000000000000000 00 33 3 88 0 88888888 0 5555555555555555555555555555555 0 88 3 3 333 33333333333 3 7 3 555 88 00 888 0 88 0000 88888888888 00 0 0 2 888888 2 55555555555555 2 555 00 2 88 0 2 000 8 0 0000 0 88 2 000 88888888888 666 000000000 0 0 6 0 222222222 0 00 00000 88 00 888888888888 000000 4 0 88 0000000000000000000000000 0 0 2222 88888888888888888 5 0 000 00 0 3 33 0 55 22 5 444444 99 777 7 7 44 7 7777777777 7 777 1111111 1 9 7 66 77777777 000 0 11 4 22 5555555555555 2 22 8 8 8 0 88 0 0 666666 0 88888 8 6666666 2222222222 0 0 3 7 0 000 00 5 55555 0 0 0 0000 0 0 0 55555 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 0 0 0000000000000 0 0 00000000 00 000000 00 0 5 0 0 555555 000 0 0 0 00 0 0 000000 0 0 5555 5 0 0 000000000000000000 0 5 5 0 555555 00 0 55 0000000000000000000 00000 0 55 5 55 0 0 55 555555555555555 5 555 0 0 0 000 0 0 0000 0 0 0 00 0 00 00000000000000000000000000000000000 000 00 0 00000000000000000000000000000000000000000000000000000000000000 0 0 00 000000 0 0 0 0 0 555555555555555 5555 00 000000000000000000000000000000000000 0 0 000000000000000000 55 5 0 0 0 000000000000000000000000000000000000000000000000000000000000000
consensus : TCTTGAT--A-G---GA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GA-CAAGG-CGTTTAATTAGCT-GACTCC------------ATT----NTATA---AT-A---ATG-AT-AATAAA---GATGACAAGCCCTGTAACAATAG-TAT-AACAATAATT----------AGAT----------ATATG----CATAAA--------ATACAATA---ATCGCTATTTACTGAATTAATCGATGTACAATTAATGCTAGCAAATTTAAGACTNTAAGGGAGAT-AACTCTGCTTTATA-CAAAGTAAGACANATATGTTAGCATT-AAATACACAAATGCATCTCCCAATATTTT---AGCT--A--TTAACTATG-AATAAAA---TCTT-TACTG---TACAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AA-ATACACA----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGAACA---AGCCAG-TA--------TAATG-GTGATCGAA-CTAATAGC-TAGTCCATGTGAATA--A-CCAT--AAAGTG-ATGAGCCTGCAAG--TTAATTAAATAACTTA-CAA-CTTGCACTTTATGC-AATTATCAT-AAA--A--TA-TG-GATAATAT-TCTTAAAAACACAT-----G----ATAGTGAGACAGAT-AATG-AAGTTGT-TTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTATCTTT-CTCACTA---TTCA--CTTNCTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTTGAATG-CAAAATTATAGGATTT-ACTATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTTA-GTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTGTAA-TGTCACAAATGTCCAAA-ATCTC--TAATA-A-TA-AGTCAAC---CGAA-CAACTT-----C-A-GACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAG--AAN-A--CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAA------ACTCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGA-TGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TTGGGC--AC-TTGCTA-C-CAGAG----GAC---TAAGAAAA--CTCACCAAGT-GTTA-TGCCTGNCC-GAA-TA-CGGAA-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGC-ACATATGC-AC-A-AGTGTGA-ATGCA-T---TATATGC-AT-ATCATATA-A-T-TATAATAAA-TTACTTCTG-CCACATTCTCCCCCGAGTNNTGTAGNAATTTGGCGCCCCGCGCCATTCCAGGANTCNCCGAGATGTGACTGACGGCAGGCAGTAATACCGGCAA---GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGTAA-GTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATNTCATCGT-CCATCNCNGAGTTTGGCCTTTAANTCTCGTT-GATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGNTCTGGAATATGTAGNTT-CTGGNTCACGCGCTGGTCCTTTCNGAATCCCTCATGATCCTNTGTCGAATGCGNNGGATAAACCGTCTGGCGTGTNGCGACTCTTTTCTTCTGGACTCGNTTTGGACCAGGGTATCTTGTGGCATTGGACCNTGACGTCATCAGGAGCGTCCTCCCCTCGGTCTTCGAGGGAGTCGTTNTAAGGCTTGTTGGTGGTGGTTACCGGTNNCCCAAAACATGANTGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAACTTTGACCNAT-ACCCGGNNGTCCCCAACCTGTAAGNTCGGCTGNCCTTGTGTTTCTCATGGT-CAACATNGCATGTGCTTATAATGCCGGACTCTTGACTGTTCGTCTANTCGCTGNTATCGGNNAAGTTCATAGGCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CATGG---ATGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
Reference ( gi|1 ) : TCTTGAT--G-G---GA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GA-CAAAG-CGTTTAATTAGCT-GAATCC------------A-T----TTATA---AT-A---ATG-ATCAATAAA---GATGACAAGCCCT-TCATAATAG-TAT-AACAATAATT----------AGAT----------AT-------TATAAA--------ATACAATA---GTCGCTA-T-GCTGAA-TAATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT--AAT-CATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA---TATTATACT----TACCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AA-ATATATA----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGAACA---AGCCAGCTATTACGTATTAATGCGTGATCAAA-CTAATAGC-TAGTCCATGTGAATA--ACCCATA-AAAGTACATGAGACTGC--G--TTAATTAAATAACTTAACAA-TTTGCACTTTATG--AATTATCAT-AAA--A--TA-TG-GATACTAT-TCTTAAAAACACAT-----G----ATAGTGAGACAGAT-AAT--AAGTTGT-TTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA--CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAATT-CAAAATTGTAAGATTT-ATTATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTTT-GTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTGGAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-A-TA-AGCC-AC---TGAA-CAACTT-----C-A-GACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAG--AAC-A--CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAA------ACTCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-A-TGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TTAAGG--AC-TTGCT--C-CAGAG----GAC---TAAGAGAC--CTCACCAAG--GTTAGTGCCTGACCAGAA-TA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGC-ACA-ATGC-AC-A-AGTGTGA-ATGCA-T---TATA-GC-ATTATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-GTCC-GCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGATTAAA---------TA------AA-AACACTTACT--TACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGTCC-TGTACGGTTCC-GCTTTC--CATCAATGG--CTGTAAAGTAAGTGGCTCTTTGTAA-CCAA---TCTGGG--TGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCTG-GTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGGA-T--GTAGGTTGCTGGATCACGC--TAGTC--T-CTGAATCCTTCATGATCCTCTGTGGA-TGCCGAGGATAAACCACCTGGCGTGTC-CGACTCTT--CTTCTGGACT--ATT--GACCA-G-T-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCTGTCTTCA--GAAGTC-TGGTAA-----G--GGTGGTGGTTACCGGTTACCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC--CCATCT--AACCTGT-ACCTCGGCTTCCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTCT-GATTG-TC--CTAA-TGCT-TT-TCGGCAAAGTTCATAG-CATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGACTTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|3 : TCTTGATTGG-G---GA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GA-AAAAGGCGTTTAATTAGCT------------------------------A---AT-A---ATG-AT-AATAAC---GATGAGAAGCCCTGTAACAATAG-TAT-AACAATA-TT----------AGAT----------ATATG----TAGAAATCAATATAATACAATATATATCGCTA-TTACTGAA-TAATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGAT-AACTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAAT-ATCT---AGCTTTAAGTTAACTATGAAATAAAA---TCTT-TACTG---TACAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG----AATATATA-A----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGAACA---AGCCAG-TA-TACG---TAATG-GTGATCAAA-CTAATAGC-TAGTCCATGTG-ATA--G-CCAT--AAAGT--ATAAGCCTGCAAG--TTAATTAAATAACTT-ACAA-CTTGCACTTTATGC-AATTATCATAAAA--A--TA-TG-GATAATA--TCT--AAAACACAT-----G----ATAGTGAGACAGAT-AATG-AAGTTGT-TTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA--CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AATG-C--AATTAAAGAATTT-ACTA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTTA-GTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTGTAA-TGTCACAAATGTC--AA-ATTTC--T-ATA-A-TATAGTCAAC---TGAA-CAACTT-------G-GACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAG--AAA-A--CTTGGAGGG---AAATCCC--AAA----ACCAAT---AAA------ACTCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-A-TGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TTAGGC--AC-TTGCTA-C-CAGAG----GAC---T-AGAAAA--CTCACCAAG--GTTA-TGTCTGACC-GAA-TA-TGGAG-TT-T--AAA--CCCAT
gi|6 : cagggtTTGAT--G-GTAGGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGA-CAAAG-GGTTTAAT-AGCTTGAATCC------------ATT----TTATA---ATAA---ATG-AT-AATAGA------GACAAGCCCT---GTAACAGATATAAACAATAATTGATATGTGTGAGA-----------AT-------CATAAA--------AT-CAATA----TCGCTATT-ACTGAATTAATTGATGT--AATTAATGCTAGC-AATTTAAGACTGTAAGGGAGAT-AACTCTGCTTTATA-CAA--T--GAC-AA------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA---TCTT-TACTG---TACAAT
gi|14 : gaacaggttttgttgtTTGAT--ATG---GA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GC-CAATG-CGTTCCATCA---------C------------ATT----TTATA---AT-A---ATG-AT----------GATAACAATCCTTGTAACAATAG-TAT-AACAATAATC----------AGATATATGTAGAAAT-------CATAAA--------ATACAA
gi|25 : gttttttttttattgTTGAT--A-G---GAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAAGG-CGTTTAATT
gi|10 : tgttgTTGAT--A-G---G---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GA-CAAGG-CTTAAAATTAGTT-AACTCC------------A-TAACGGTACAC--AT-GTATATGTAT--GTATATTTTATAATAAGCCATGTAACAATAG-TAT-AACAATCATT----------ATAT----------ACATGTGTGTATAAAGATC----ATAAAATA---c
gi|19 : taacagggttttgttgatagG--GTTCGT-GA-CAAGG-C-TTTAATTAGTT-GACTCCGTAACGGTACACA-T----GTATATGTAT-A---ATA-TTTCATAA---------TAAGCCCTGTAACAATAG-TAT-AACAATCATT----------AGAT----------Acagaat
gi|23 : gAAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA---TCTT-TACTG---TACAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGTcctgt
gi|22 : CACAAATGAA-CACACAATA-TTT---ACCT-----TTAACTATG-AATAAAA---TCTT-TACTC---TACCATCATGTTTATCATG-ATA-TA---CAGA-T-TA
gi|4 : aagggagataactctgct-----TTAACTATG-AATAAAAATCTGTTA-GCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AA-ATA-ATAATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGAACATGAAGCCAG--------TA--AATG-GTGATCAAAAC--ATAACCTAGTC-ATGTGAATATTAACCATT-AAGGTGTAAGCG-CTACAAG--TTAATTAAATAACTTA-CAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GATAATAT-C--TAAAAAGAC-------------TAGTGAGACAGATTAATGAAAGTTGT-TTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA--CTAC-TCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTTAATTTGCAAAATTATAGGATTTTACTATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAAC-AGAGGAAAA--CGTC-AGTCTC-GAGTTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATA-TAGAGTCAAC---TGAATCAACTTTTCTGC-AGGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAA--CTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATA------ACTCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGC-ATTGGACAACT-TG-GCAAGTAAC-ATA-ATTA--GGGACC------ATTAGGCCAC-TTGCTA-C-CAGAG----GAC---TAAGAGAA--CTCACCAAG--GTTA-TGCCTGACC--GA-TA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGC-ACATATGCAAC-A-GGTG-AA-ATGCA-TTAATATG-AC-A-TATCAAATATA-TG-AAAATAAA-CT
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAA-TTACACA----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGAATA---AGCAAG-----------TAAGG-GTAATCGAA-CTAA---C-T-GTTCATGTGACTA--ATG-ATATAAAGTA--TGAGCCTGT--AACTTAATTAAAGAACTTA-CAA-CTTGCACTTTATGC-AATTATCAT-AAAACA--TA-TG-GATAATATATC----AAACACAT-----GATATATAGTTAGACAAAT-AATG-AAGTTtaa
gi|26 : --------------A------------------TA-CCATTCTG--TGGGAATA---AGCCAG-TAT
gi|9 : ggac--AATCAACAT-AAA--A---A-TGTGA--------CTTAGATATACATCATATG----ATAGTGAGGTAGAT-AAT--GAAATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTC-TCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AACG-CAGAATTATAGG---T-A------CAAA-T----------G---T-TTC-ATCATTAGTAATAAACGCG-GTATCTTACa
gi|5 : ggcCTA---TTCA--CTTACTCAGG--AT-GAAGTGC-ACGGT-A-AATTAAT-CTTGA-TG-CAAAATTATAGGATTC-ACTATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTTA-GTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTGGTA-TGTCACAAATGTC--AA-ATCTCTATAAAA-A-TA-ACCA-AC---CAAA-C-ACTT-----C-A-GACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAG--AAC-A--CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAA------ACTCTAG-ATAC
gi|2 : AAACAAGAGGGAAAACCGTCCAGTCTCAA---TTGTAA-TGTCACAAATGT-CACA-ATCTCA-TAATA-ACTG-AATC-GTGCATGAA-ACACTT-----C-AAGACTCCTG-AC-AA-GACTAGA------GGTAC-AATACAAAG--AAA-AAGCCTGGAGGGGAAAAATCCC--AAA-------AACAAAAAACATAATACAC-AC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGA-TGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGG--GCATTGCTA-C-CAG-G----CAC---TAAGAGAA--CTC-CCAAG--GT-ATGGCCTGACC-GAA-TA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATGA-ATA--TGC-ACCACAGT-TGATATGCAAT---TA------ATGATTATAAA-----TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGAC-GCAGGCAGTAATACC-GC-----GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGTAA-GTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTGT-CCATCACAGAGTTTGGCC-TTAATT-TCGTT-GATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAAT--GTAGGTT-CTGGATCACGCGCTGGTCCTT-CTGA---CCTCATGATCCTATGTGGAATGCTGA---TAA--CATCTGGCATGTCGCGACTCTTTTCTTCTG-ACT--CTT--GACCA-GGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCCT--CTTCTGT-TTCAAGAAAGTCGTTGTAAGGCTTG--GGTGGTGGTTACCGGTACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAACT-TGACCAAT-ACCC--GGGTCTCCAACCTGTAAACTCGGCTGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTCT-GATTGTTC--CTAATTGTTGTT-TCGGGCAAGTTCATAG-CATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CATGG---ATGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAATgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|15 : -CAACTT-----CTA-AACT--TTGAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAG--AAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAA------ACACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAA-GGGAAAACT-Tcca
gi|12 : ATA-ATTATTAGGAC-------TTGGGC--AC-TTGAT--AACAGAG----AACAGATAAGAAAAAACTCAACAAGTGGTTTATGCCTGTCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtc
gi|24 : A-ATTA--GATACCATAGAGTTAGAC--AC-TTACTA-C-CAGAA----AAC---TAAAACAA--CTCACCAAGT-GTTA-TGTCTGACC--------------------AAA--TCCATTG--AAGGGTTGTATCATGatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|13 : aa-ATTA--GG-ACC------TTGGGC--AC-TTGATAAC-AGGAGAAAAGA----TAAGAAAAAACTCAACAAGT-GTTTATGCCTGTCCCGAA-TA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAt
gi|16 : aatACC------TTGGGC--AC-TTGATA-C-CAGAG----AACAGATAAGAAAA--CTCACCAAGT-GTTA-TGCCTGTCC-GAA-GA-CGGAA-TTGT--AAA--TCCATTG--AAGGATTGTATCATTCA-ATAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAAC-AAT-ATGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-T---TATATGCTATAATCATAT--ATTAT---ATAAA-TTACTGCTGACCAtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTGA-A-GGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGC-ACATATGC-AC-A-A--GTGA-ATGCA-T---TATATGC-AT--TCATA-------CATAATAAA-TTACTc
gi|5 : AAAATCAAATAATGGTAATGC-ACATATGC-AT-A-AATG--A-ACGCA-G---TATATGC-AT-ATCATATA-------TAATAAA-TCAC-TCTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCGCCC-ACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAAcg
gi|7 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntATAAAATATC-TCGT-CCAT-CTTG-GTTTGG-CTTTAAATCT
gi|7 : T--GT--AAAAT-TGGA-TATGTAGTTT-CTGGCTTACGC--TGGTT--TTCAAAATCCTT-ATGATCCTCTATCAA-TGTGTTGGATAAACCGTCTGGCGTGTA-CGACTCTT--CT----GACTCGATTTGGACCAGG-T-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCCTCCTCTTGGTCTTCG--GGAGTC-T-CTAA-----GTTGATGGTGG-TACTGG-TACCCAAAATAT-ACTGAAAATCTGCAattgtaaaattggatatgtagtttctggcttacgctggttttcaaaatccttatgatcctctatcaatgtgttggataaaccgtctggcgtgtacgactcttctgactcgatttggaccaggtttttgtggtatgaccttgacgtcatcagaagcgtcctcctcttggtcttcgggagtctctaagttgatggtggtactggtacccaaaatatactgaaaatctgcag
gi|11 : ataaaatatctcgtccatcttggtttggctttaaatctatACTTTGACTTAT-ACCCGGTC-TCC--AACCTGT-AGATCAACT-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTG-TTGTTTAT-CGCT-GTATTGGCAA-GTTTATAGGCATTTTCT-AGGCg
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|20 ): CCATTCCGTTGTACTACATGTAGACCATTACAATGGTGAACTGCCCATGTGACAGAACCATACAGAGTGCCAGGTTGTAAGTTAATTAACTAATTTACAACT
Unaligned ( gi|21 ): ATATATATATATATATATATAATAGATTTTTATTAAGCCCTGTAACAATAGTACATGTATAACAATCATTATAAGATATATGTAGAAATCATAAAATACA
Alignments
lowQualScore : 1111111111111 111111111111111111111111111111111111
lowQualScore : 1111 11111 333333333333333333333333 111 1 222222222 111111 111 0000000000000 22222222 3333 333 11 1 1 44444444444444 1 1111 4444444 111 111 11 2222 1 22222222 11 000000000000000000000000000000000000 222 3333333333333333 222 111 1111 333 11 111111 11 4444444 1111 1 111 1111 111111 1 1 222 11 22 2 11 111 44444444444444 11 111 22 1111 1 2222222 222222222 222222 22222 11 11 1111 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 2222 11 1 11 1 1111 111 1 3333333333333 11111 1111111 3333333 1 3333 33 2 3333 2 33 44444444 11 1 2 4444444444444444 11 2 11 333333333 333333333 222 1 2 1 11 11 2 1 222 11 11 22 2 1 222 2 1 11 11 1111 1 22222 22 222 22 22222222 44444 33 11 33 2 66666666 11 2 222 2 2 3333 1 2 11 2 11 333 1 22 2 22 1 22 2 2 1 2 333 22 11 1 1 2 1 2 2 1 55555555 2 11 2222 3333 111 4444 2 2 44444444444444444 11 2 2 222 6666666666666666666 2 8888888888888
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 999999999999999999999999 888 6 3 111111111 2 5 666666 8 000 1 1111111111111 44444444 5555 000 44 0 6 7 1 2 0 333 0 3 33333333333333 3 0 0 0 6 4444 3 9999999 6 6 6 6 6 2 111 0 6 6 888 6 6 33 1111 0 44444444 33 555555555555555555555555555555555555 6 99 99 333 6 6666666666666666 8 0 4 8 8 0 444 5 88 444 2222 8 8 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 8888 333333 0 0 222 8 11 11 8 8 8 8 8 11 3 0 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 55 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 7 6 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 8888 33 5 66 5 5 5 1 66 0 66 0 0000 66 333 0 88 0000000000000 0 6 6 6 33333 6 6 6 5555555 9999999 6 3 0 2 7777 22 11 00 6 8 2222 3 6 6 00 7 33333333 88 5 0 8888888888888888 88 4 0 88 4 55 777777777 2 666666666 2 000 5 0 5 88 2 4 88 0 5 111 77 88 55 77 1 3 0 3 1 333 6 7 1 0 3 5 88 88 1 7777 1 3 1 6 6 77777 1 7 0 6 1 11 666 7 0 44 7 7777777 99999999 33333 6 11 00 1 0 88 6 55 0 3 1 33333333 7 55 3 1 0 111 0 0 9999 5 0 88 0 88 555 5 77 0 77 2 5 2 77 0 0 5 0 4 4 000 77 55 88 5 5 2 0 5 0 0 7 1 3 22222222 3 44 66 2222 7 1111 7 0 1 555 5555 3 3 0 44444444444444444 55 3 0 3 3 333 2222222222222222222 6 0 8888888888888
lowQualScore : .... . ..... . .. . . . . . ........................ ... . . ......... . . ...... . ... . ............. ........ .... ... .. . . . . . . ... . . .............. . . . . . .... . ....... . . . . . . ... . . . ... . . .. .... . ........ .. .................................... . .. .. ... . ................ . . . . . . ... . .. ... .... . . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .... ...... . . ... . .. .. . . . . . .. . . .. . . . ... . . .............. . ... . . .. . ... .. . .. .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . . . ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... .. . .. . . . . .. . .. . .... .. ... . .. ............. . . . . ..... . . . ....... ....... . . . . .... .. .. .. . . .... . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . . ... . . . . . . .. .. . .... . . . . . ..... . . . . . .. ... . . .. . ....... ........ ..... . .. .. . . .. . .. . . . ........ . .. . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . . ........ . .. .. .... . .... . . . ... .... . . . ................. .. . . . . ... ................... . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 000000000000000000000000 333 7 3 888888888 2 7 444444 3 000 7 7777777777777 22222222 7777 000 77 7 7 3 0 5 0 888 0 2 00000000000000 7 0 8 8 0 8888 2 6666666 7 7 7 7 7 5 777 8 7 7 333 7 7 22 2222 0 22222222 22 555555555555555555555555555555555555 7 22 22 333 7 8888888888888888 0 8 6 0 0 8 000 6 88 000 2222 0 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 5555 222222 0 0 000 0 88 00 0 0 0 0 0 22 2 8 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 66 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 3 7 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 88 5 99 0 0 0 0 99 1 11 0 1111 11 000 0 88 0000000000000 8 7 7 7 55555 7 7 7 0000000 3333333 7 8 0 5 7777 00 77 77 7 7 3333 3 7 7 00 3 77777777 00 5 0 0000000000000000 00 0 0 55 0 55 555555555 5 555555555 5 555 0 0 0 00 5 0 55 0 5 555 55 55 00 55 0 7 7 3 0 000 7 3 0 0 0 0 55 00 0 7777 0 3 0 7 7 00000 0 3 7 7 0 77 333 3 7 33 3 0000000 77777777 00000 7 33 33 0 7 77 7 77 7 3 0 00000000 3 00 3 0 7 000 0 0 0000 0 0 00 0 00 000 0 55 0 55 5 5 5 55 0 0 5 0 0 0 000 55 00 00 0 5 5 0 5 0 0 3 0 3 77777777 7 77 00 0000 3 0000 3 7 0 333 0000 3 7 7 33333333333333333 00 3 7 3 7 333 3333333333333333333 7 0 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-G-AC-AAGGCGTTTAATTAGCT-GA-TCCAT-----T-TATA---ATA---A-TG-AT-AATA-NG-ATAACAAGCCCTGTAACA-ATA------GTATAACAATNATT---AGATATATGTGGGAAT------CATAA--------AATACAATA---GTCGCTATT-ACTGAATTAATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGTAANACACATATGC-ANCATTAAA-TACACAAATGCATCTCCCAATATTTT---ANCT-------TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AA-ATATATA----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG--------TA----T-AATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---AC--C-AT-AAA-GTG-ATG--AGC-CTGCAAGTTAATTAAATAACTTA-CAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--T-AG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-C-ACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATGTC-AAAATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCTG-AC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AATAAAA-AAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTGACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAA--TGGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCATCNCGG-GTTTGGCCTTTAAATCTCGTTTGATCNTTCTAGGAGCGGGTTCGAGACTAGTCAAGGTTCTGGGATATGTAGGTT-CTGGATCACGCGCTGGTC-TTTCTGAATCCTTCATGATCCTCTGT-GAATGCN--GGATAAACCGTCTGGCGTGTC-CGACTCTTTTCTTCTGGACTC-ATTTGGACCAGG-T-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTCCTCTC-GTCTTC--GGAAGTC-TTGTAAG----G--GGTGGTGGTTACCGGT-ACCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCCG---GTCTCCAACCTGT-ANCTCGGCT-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTT--CCTAATCGCTG-T-TCGG-CAAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-TGG---ATGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-G-AC-AAGGCGTTTAATTAGCT-GACTCCAT-----TNTATA---ATA---A-TG-AT-AATAAAG-ATGACAAGCCCTGTAACA-ATA------GTATAACAATAATT---AGATATATG-------------CATAA--------AATACAATA---ATCGCTATTTACTGAATTAATCGATGTACAATTAATGCTAGCAAATTTAAGACTNTAAGGGAGATAA-CTCTGCTTTATA-CAAAGTAAGACANATATGTTAGCATTAAA-TACACAAATGCATCTCCCAATATTTT---AGCT----A--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AA-ATACACA----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG--------TA----T-AATG-GTGATCGAA-C-TAATAGCTAGTCCATGTGA-ATA---AC--C-AT-AAA-GTG-ATG--AGC-CTGCAAGTTAATTAAATAACTTA-CAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--T-AG-T-AA-AAT-AAGTATCTTT-CTCACTA---TTCA-CTTNCTCAGG--AT-GAAGTG-C-ACGG-GA-AATTAATTCTTGAAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATGTCCAAAATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCTG-AC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AATAAAA-AAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGAC----TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTGNCC--GAATA-CGGAA-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCCGAGTNNTGTAGNAATTTGGCGCCCCGCGCCATTCCAGGANTCNCCGAGATGTGACTGACGGCAGGCAGTAATACCGGCAA---GTAATGAATATATAA-TTGAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATNTCATCG-TCCATCNCNGAGTTTGGCCTTTAANTCTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGNTCTGGAATATGTAGNTT-CTGGNTCACGCGCTGGTCCTTTCNGAATCCCTCATGATCCTNTGTCGAATGCGNNGGATAAACCGTCTGGCGTGTNGCGACTCTTTTCTTCTGGACTCGNTTTGGACCAGGGTATCTTGTGGCATTGGACCNTGACGTCATCAGGAGCGTCCTCCCCTCGGTCTTCGAGGGAGTCGTTNTAAGGCTTGTTGGTGGTGGTTACCGGTNNCCCAAAACATGANTGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAACTTTGACCNAT-ACCCGGNNGTCCCCAACCTGTAAGNTCGGCTGNCCTTGTGTTTCTCATGGT-CAACATNGCATGTGCTTATAATGCCGGACTCTTGACTGTTCGTCTANTCGCTGNTATCGGNNAAGTTCATAGGCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CATGG---ATGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-G-AC-AAAGCGTTTAATTAGCT-GAATCCAT-----T-TATA---ATA---A-TG-ATCAATAAAG-ATGACAAGCCCT-TCATA-ATA------GTATAACAATAATT---AGATAT----------------TATAA--------AATACAATA---GTCGCTAT--GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGTAAT---CATATGC-ACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-------TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AA-ATATATA----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTA----TTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---AC--CCAT-AAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTA--TTAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTG-CCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAAATCTC--TAATA-ATA-AGCCA-CTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTGACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAA--TGG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCTG-GTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG---ATGTAGGTTGCTGGATCA--CGCTAGTC---TCTGAATCCTTCATGATCCTCTGT-GGATGCCGAGGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA--GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCTGTCTTC--AGAAGTC-TGGTAAG-------GGTGGTGGTTACCGGTTACCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC--CCAT--CTAACCTGT-ACCTCGGCTTCCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGT---CCTAAT-GCT--TTTCGGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGACTTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-G-AC-AAGGCTTAAAATTAGTT-AACTCCATAACGGTACACATGTATATGTA-TGTAT-ATT--TT-ATAATAAGCCATGTAACA-ATA------GTATAACAATCATT---ATATACATGTGTGTATAAAGATCATAA--------AATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCCG---GTCTCCAACCTGT-AGATCAACT-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTT-GTTTA-TCGCTG-TATTGG-CAAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C-------------G---ATGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTGTCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC-GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-G-CC-AATGCGTTCCATCA---------CAT-----TTTATA---ATA---A-TG-AT-------G-ATAACAATCCTTGTAACA-ATA------GTATAACAATAATC---AGATATATGTAGAAAT------CATAA--------AATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-TG-AG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AATAAAA-AAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTGTCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-G-AC-AAGGC-TTTAATTAGTT-GACTCCGTAACGGTACACAT--GTAT--A-TGTAT-AATATTTCATAATAAGCCCTGTAACA-ATA------GTATAACAATCATT---AGATAcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATGTC-ACAATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCTG-AC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AACAAAA-AACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTGACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCG-C-----GTAATGAATATATAA-TTGAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCATCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAAT--GTAGGTT-CTGGATCACGCGCTGGTCCTT-CTGA---CCTCATGATCCTATGTGGAATGCT---GATAA--CATCTGGCATGTCGCGACTCTTTTCTTCTG-ACTC---TTG-ACCAGG-TATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCCTCTTCT--GT-TTCAAGAAAGTCGTTGTAAGGCTTG--GGTGGTGGTTACCGGTACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGG--GTCTCCAACCTGTAAACTCGGCTGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GCTT----TGCCGGACTC-TGATTGTTC--CTAATTGTTGTT-TCGGGCAAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CATGG---ATGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAATcctgt
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT--------TA----C-AATG-GTGA----A-C-T--------GCCCATGTGACAGA---AC--C-AT-ACA-GAG--TGCCAGG-TTGTAAGTTAATTAACTAATTTA-CAA-CTcca
gi|21 : AAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATGTAGAAAT------CATAA--------AATACA
gi|22 : atatatatatatatatatataatagatttttattAAGGGAGATAA-CTCTGCT---CA-CAAA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-------TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAtgaacacacaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgctAAA-TACACAAATGCATCTCCCAATATTTTTAAAACT----AAATTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTGACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-G-GCCAAGGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG--------TA----T-Ac
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAAA-AAGGCGTTTAATTAGC-------------------TA---ATA---A-TG-AT-AATAACG-ATGAGAAGCCCTGTAACA-ATA------GTATAACAAT-ATT---AGATATATG-------------TAGAAATCAATATAATACAATATATATCGCTA-TTACTGAA-TAATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATTAAA-TACACAAATGCATCTCCCAATA-TCT---AGCTTTAAG--TTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG----AATATATA-A----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG--------TATACGT-AATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---GC--C-AT-AAA-GT--ATA--AGC-CTGCAAGTTAATTAAATAACTTA-CAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--T-AGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-C-ACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATGTC--AAATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCTG-AC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT--AA-AAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTGACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt--TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AA-ATA-ATAATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG--------TA------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAAC--C-ATTAAG-GTG--TA--AGCGCTACAAGTTAATTAAATAACTTA-CAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAAT-AG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGC-ATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATGTCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCTG-AC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AATAAAT-AAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTGACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-C-ACGG-TA-AATTAAT-CTTGA-T--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATGTC--AAATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCATG-ACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT-AAA-AAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-A--ATGA-ACGCA-GT-ATATG-C-A-T-ATCATA-------TATAATAAA-TCAC-TCTG-CCACATTCTCCCCC---TTGTGTAAGAA--TGGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTG-AC-AAAGGGTTTAAT-AGCTTGAATCCAT-----TTTATA---ATA---AATG-AT-AATAGAG-A---CAAGCCCTGTAACAGATA-------TA-AACAATAATT----GATATGTGTGAGAAT------CATAA--------AAT-CAATA----TCGCTATT-ACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAA--T--GACAA-------AGCATTAAA-TACACAAATGCATCTCCC-ATATTTT---AGCT-------TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCATCTTG--GTTTGG-CTTTAAATCT
gi|7 : GGATATGTAGTTT-CTGGCTTACGC--TGGT--TTTCAAAATCCTT-ATGATCCTCTATC-AATGTGTTGGATAAACCGTCTGGCGTGTA-CGACTCTTCT------GACTCGATTTGGACCAGG-T-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCCTCCTCTTGGTCTTC--GGGAGTC--TCTAA-----GTTGATGGTGG-TACTGGT-ACCCAAAATAT-ACTGAAAATCTGCAattgtaaaattggatatgtagtttctggcttacgctggttttcaaaatccttatgatcctctatcaatgtgttggataaaccgtctggcgtgtacgactcttctgactcgatttggaccaggtttttgtggtatgaccttgacgtcatcagaagcgtcctcctcttggtcttcgggagtctctaagttgatggtggtactggtacccaaaatatactgaaaatctgcag
gi|8 : ataaaatatctcgtccatcttggtttggctttaaatctattgtaaaattTG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAA-TTACACA----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG--------TA-------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---ATGAT-AT-AAA-GT--ATG--AGC-CTGTAACTTAATTAAAGAACTTA-CAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--C-AG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-C-ACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 77777777777777777777777777777777777777777777777777777777777 111111 111 222222222 3333 2 1 1 333333333333333 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 22 1 1 11 11 333 1 11 1 444444 1 111111 3333333 1 11 1 33 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 11111111111111111111111111111111111111111111111111111111111 0 5 666666 6 000 3 444444444 6 5555 7 3 0 6 7 2 0 3 999999999999999 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 1 88 6 7 5 1 5 88 88 444 3 6 6 99 7 6 3 444444 7 0 3 7 777777 9999999 6 3 6 88 3 00 6 88 5555 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ........................................................... . . ...... . ... . ......... . .... . . . . . . . . ............... . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .. . . . . . .. .. ... . . . .. . . . ...... . . . . ...... ....... . . . .. . .. . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 55555555555555555555555555555555555555555555555555555555555 4 7 444444 6 000 6 555555555 7 3333 3 7 7 7 3 5 0 3 333333333333333 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 0 33 7 3 5 0 0 55 00 333 3 7 7 00 3 7 3 333333 3 7 3 3 000000 7777777 7 3 7 33 3 77 7 33 0000 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----NT-ATA---ATA---A-TG-AT-A-ATA--G--------AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATGTAGA------AATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGTAA-ACACATATG-CANCATTAAA-TACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCATCNC--GGTTTGGCCTTTAAATCTCGTTTGATCNTTCTAGGAGCGGGTTCGAGACTAGTCAAGGTTCTGGG--ATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTCTTTTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTCTT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----TT-ATA---ATA---A-TG-AT-A-ATAN-G--------AT----AACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATGTGGG------AATCA-TAAAATACAATA---GTCGCTATTACTGAATTAATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGTAANACACATATG-CANCATTAAA-TACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCATCNC-GGGTTTGGCCTTTAAATCTCGTTTGATCNTTCTAGGAGCGGGTTCGAGACTAGTCAAGGTTCTGGGATATGTAGGTT-CTGGATCACGCGCTGGTCTTTCTGAATCCTTCATGATCCTCTGT-GAATGC--N--GGATAAACCGTCTGGCGTGTC-CGACTCTTTTCTTCTGGACTC-ATTTGGACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTCTC-GTCTTC--GGAAGTC-TTGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCAT----TT-ATA---ATA---A-TG-ATCA-ATAAAG--------AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGTAAT---CATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCC-TGGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG---ATGTAGGTTGCTGGATCA--CGCTAGTC--TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCAT----A--ACG---GTACACA-TGTAT-ATGTAT-GTATATTTTAT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CAT----TTTATA---ATA---A-TG-AT--------G--------AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATGTAGA------AATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGTAACGGT-ACACATGTAT--A-TGTAT-A-ATAT-TTC------AT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTGTcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCATCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGA--ATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC--T---GATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-TCTTCT--GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : AT----AT-ATAT--ATAT--A-T--AT-A-ATA--G--------ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATGTAGA------AATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcacaaatgaacacacaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgctAAA-TACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-------------------A---ATA---A-TG-AT-A-ATAACG--------AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATGTAGA------AATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATTAAA-TACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCAT----TTTATA---ATA---AATG-AT-A-ATA--G--------A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTGTGAG------AATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATTAAA-TACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCATCTT--GGTTTGG-CTTTAAATCT
gi|7 : GGATATGTAGTTT-CTGGCTTACGC--TGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGACTCTTCT------GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCAattgtaaaattggatatgtagtttctggcttacgctggttttcaaaatccttatgatcctctatcaatgtgttggataaaccgtctggcgtgtacgactcttctgactcgatttggaccaggtttttgtggtatgaccttgacgtcatcagaagcgtcctcctcttggtcttcgggagtctctaagttgatggtggtactggtacccaaaatatactgaaaatctgcag
gi|8 : ataaaatatctcgtccatcttggtttggctttaaatctattgtaaaattTG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 6666666666666666666666666 222 1 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 11 1111111111 1111111 3333 11111111111 111 11 1 44444 1 2222 1 2222222 1 11 1 111 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 5555555555555555555555555 111 5 1 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 11 88 6 7 9999999999 7777777 3333 6 44444444444 7 111 88 7 6 3 88888 7 0 3 8888 3 7777777 6 3 6 88 3 666 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ......................... ... . . . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .. .. . . .......... ....... .... . ........... . ... .. . . . ..... . . . .... . ....... . . . .. . ... . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 8888888888888888888888888 444 7 4 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 77 33 7 3 3333333333 7777777 0000 7 33333333333 3 777 77 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 777 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----T-ATA-----ATAT--A-TG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNCGG--TTTGGCCTTTAAATCTCGTT-GATCATTCTAGGAGCGGGTTCGAGACTAGT--AGGTTCTGGGATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTCCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----T-ATA-----ATA---A-TG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNCGG--TTTGGCCTTTAAATCTCGTTTGATCNTTCTAGGAGCGGGTTCGAGACTAGTCAAGGTTCTGGGATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTCTTTTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTCTT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCATT----T-ATA-----ATA---A-TG-ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCTGG--TTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCT-GGATGTAGGTTGCTGGATCA--CGCTAGTC--TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGGT-ACACATGTATATGTA-TGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CATT----TTATA-----ATA---A-TG-AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGTAACGGT-ACACAT--GTAT--A-TGTAT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGTAA-GTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCGTT-GATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-TCTTC-T-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : ATA----T-ATAT----ATAT--A-T--AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-------------------A-----ATA---A-TG-AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCATT----TTATA-----ATA---AATG-AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTTGG--TTTGG-CTTTAAATCT---------ATTGTAAAATTGGATATG----TAGT-----TTCTGG-----------C----TTACG--CTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 666666666666666666666666666 1 22222 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 1 222222 11 11111111111 11111111 11 1 44444 1 2222 1 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 111111111111111111111111111 5 00000 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 888 5 999999 88 6 44444444444 66666666 88 7 6 3 88888 7 0 3 4444 3 7777777 6 3 6 88 3 6 0 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ........................... . ..... . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ... . ...... .. . ........... ........ .. . . . ..... . . . .... . ....... . . . .. . . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 555555555555555555555555555 7 00000 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 777 0 000000 33 7 33333333333 00000000 77 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 7 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----N----T-ATA---ATATATG-----AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGACTA-GT--AGGTTCTGGGATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----N----T-ATA---ATATATG-----AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTTCGAGACTA-GT--AGGTTCTGGGATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTCCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCAT----T----T-ATA---ATA-ATG-----ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT---GT--AAGTTCT-GGATGTAGGTTGCTGGATCA--CGCTAGTC--TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGG----T-ACACATGTATATGTATGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CAT----T----TTATA---ATA-ATG-----AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGT----AACGGT-ACACATGTATATGT----AT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTA-GTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCT-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : AT----A----T-ATAT--ATATAT------AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-----------------------A---ATA-ATG-----AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCAT----T----TTATA---ATAAATG-----AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGG-CTTTAAATCT---------ATTGTAAAA-----TTGGA---TATGT--AGTTTCTGG-----------CT------TACGCTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 666666666666666666666666666 1 22222 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 1 55555555555555555 1 33 11 1 44444 1 2222 1 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 111111111111111111111111111 5 00000 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 888 3 7 55555555555555555 3 00 88 7 6 3 88888 7 0 3 4444 3 7777777 6 3 6 88 3 6 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ........................... . ..... . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ... . . ................. . .. .. . . . ..... . . . .... . ....... . . . .. . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 555555555555555555555555555 7 00000 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 777 3 3 77777777777777777 3 00 77 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----N----T-ATA---ATATATG-----AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGACTAGT--AGGTTCT-GGATGTAGGTT-CTGGATCA--CGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCAT----N----T-ATA---ATATATG-----AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGACTAGT--AGGTTCTGGGATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCAT----T----T-ATA---ATA-ATG-----ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCT-GGATGTAGGTTGCTGGATCA--CGCTAGTC--TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGG----T-ACACATGTATATGTATGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CAT----T----TTATA---ATA-ATG-----AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGT----AACGGT-ACACATGTATATGT----AT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCT-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : AT----A----T-ATAT--ATATAT------AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-----------------------A---ATA-ATG-----AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCAT----T----TTATA---ATAAATG-----AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGG-CTTTAAATCT---------ATTGTAAAA-----TT-G-GA-TA---------------TGTAGTTT-CTGGCTTA--CGCTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 77777777777777777777777777777 1 1 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 66666666666666666666666 1 11 2 1 44444 1 11 1111 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 00000000000000000000000000000 5 1 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 33333333333333333333333 3 88 3 7 6 3 88888 7 0 3 88 8888 7777777 6 3 6 88 3 6 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ............................. . . . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ....................... . .. . . . . ..... . . . .. .... ....... . . . .. . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 11111111111111111111111111111 7 4 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 33333333333333333333333 3 33 3 3 7 3 77777 3 7 3 33 0000 7777777 7 3 7 33 3 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGTC-TTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCTG-TCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGACTAGT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGTCCTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCTG-TCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCATT----------T-ATA---ATA-ATG-ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG-ATGTAGGTTGCTGGATCA--CGCTAGTC--TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCTG-TCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGGTACACAT-GTAT--ATGTATGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CATT----------TTATA---ATA-ATG-AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGTAACGG------T-ACACATGTATATGTAT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCTG-T-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : ATA----------T-ATAT--ATATAT--AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-------------------------A---ATA-ATG-AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCATT----------TTATA---ATAAATG-AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGGC-TTTAAATCT---------ATTGTAAAATTGGAT-----------------------ATGTAGTTT-CTGGCTTA--CGCTGGTT-TTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGACTC--TTCT----GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 77777777777777777777777777777 1 1 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 55555555555555555555555 1 11 111 1 44444 1 2222 1 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 00000000000000000000000000000 5 1 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 99999999999999999999999 3 88 666 7 6 3 88888 7 0 3 4444 3 7777777 6 3 6 88 3 6 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ............................. . . . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ....................... . .. ... . . . ..... . . . .... . ....... . . . .. . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 11111111111111111111111111111 7 4 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 33333333333333333333333 3 33 000 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCATT----------T-ATA---ATA-ATG-ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG-ATGTAGGTTGCTGGATCA--CGCTAGT-C-TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGGTACACAT-GTAT--ATGTATGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CATT----------TTATA---ATA-ATG-AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGTAACGG------T-ACACATGTATATGTAT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCT-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : ATA----------T-ATAT--ATATAT--AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-------------------------A---ATA-ATG-AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCATT----------TTATA---ATAAATG-AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGGC-TTTAAATCT---------ATTGTAAAATTGGAT-----------------------ATGTAGTTT-CTGGCTTA--CGCTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 77777777777777777777777777777 1 1 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 444444444 222 22222222 1 333 11 111111 11 4444444 1111 1 111 22 111111 1 1 222 11 1 22 11 111 44444444444444 11 111 1 1111 1 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 33333333333333333 1 11 111111 4444 11 1 11 11 1111 111 1 3333333333333 1111111 3333333 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 55555555555555555555555 1 11 111 1 44444 1 2222 1 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 00000000000000000000000000000 5 1 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 6 888888888 8 0 8 8 0 444 5 88 00000000 6 111 11 8 0 8 8 3 8 8 333333 8 8 11 8 3333333 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 11 8 11 0 0 8 444 0 0 88888888888888 0 999 8 0 11 8 444 88 8 8 0 8 7777 8 6 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 99999999999999999 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 88 0000000000000 0 6 6 6 888888 6 6 6 5555555 3333333 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 99999999999999999999999 3 88 666 7 6 3 88888 7 0 3 4444 3 7777777 6 3 6 88 3 6 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . ............................. . . . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . . ......... . . . . . ... . .. ........ . ... .. . . . . . . . ...... . . .. . ....... . .... . . . ... .. ...... . . ... . . .. . . . . .. . .. . . . ... . . .............. . ... . . .. . ... .. . . . . .... . . . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... ................. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . .. ............. . . . . ...... . . . ....... ....... . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ....................... . .. ... . . . ..... . . . .... . ....... . . . .. . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 11111111111111111111111111111 7 4 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 7 222222222 0 8 0 0 8 000 6 88 22222222 0 888 00 0 8 0 0 2 0 0 888888 0 0 00 0 8888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 22 0 00 8 8 0 000 8 8 22222222222222 8 444 0 8 00 0 222 66 0 0 6 0 4444 0 0 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 22222222222222222 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 88 0000000000000 8 7 7 7 555555 7 7 7 0000000 7777777 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 33333333333333333333333 3 33 000 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT--GAATCCATT----------T-ATA---ATA-ATG-ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTACGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-AT---TATTTTAGATT----------G---TATAT-ATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAA-ATCTC--TAATA-ATA-AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGTATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG-ATGTAGGTTGCTGGATCA--CGCTAGT-C-TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT--AACTCCATAACGGTACACAT-GTAT--ATGTATGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA----------CATT----------TTATA---ATA-ATG-AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATT---AT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATAC--GCA--A--C-ATCTACAATTAAAAAACAA-TA-TGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATAT--AT--TAT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACT-GAA--AT-C-A-----AATT-AAAATCAAATAATGGTAATGCA-CATATGC-AC-A-A--GTGA-ATGCA-TT-ATATG-C-A-T--TCATA-------CATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT--GACTCCGTAACGG------T-ACACATGTATATGTAT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACA-ATCTC----ATA-ATA-ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG----TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTAGAATCA--C-A-----CATTAAAA-TCAAATAATGGTAATG-A--ATATGC-ACCACAGT-TGATATGCAATT-A-ATG-------AT--TATA-AA--TATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCT-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT-TA--------CAATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGAG--TGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : ATA----------T-ATAT--ATATAT--AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG-TA--------TAc
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-------------------------A---ATA-ATG-AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TATACG----TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATA--TCT--AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-AC---TA-TTTAGATT----------T---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AA-ATTTC--T-ATA-ATATAGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT---G----CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG-TA---------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGTG--TA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-C--TAAAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAAT-CTT-AATTTGCAAAATTATAGGATTTTAC---TATTTTAGATT----------AAAATAT-T-ATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAATATCTA--TAATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATT---GGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACT-GAA--AATCAA-----AATTAATAAACAAATAATGGT--TGCA-CATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATATAT--GAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAAT-CTT-GAT--GCAAAATTATAGGATTC-AC---TATTTTAGATTTATATTAGAAA---TATATTATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AA-ATCTCTATAAAA-ATA-A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGCA-CATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA-------TAATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAA-TCCATT----------TTATA---ATAAATG-AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGGC-TTTAAATCT---------ATTGTAAAATTGGAT-----------------------ATGTAGTTT-CTGGCTTA--CGCTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG-TA----------AGG-GTAATCGAA-C-TAA---CT-GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATATC----AAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-ACAAATGTTTC--ATC----------A---T----------TAGTAATAAACGC-GGTATCTTAC
blockSeqs : TGG A TTGTT T CG T C A AACTCCATAACGGTACACATGTAT T T . GATTTTT G CATGTA C TAA A TGTGTA A TATA T T C A G . TTA . GTAAAATACATATGTT A . T TTAA C TTAAG A A G . G C GTA G T TGA A A TG GGTCA T AATAG CT TAATTACTGATGAATGAACA A GA CT TGT A . TACGT . A A TAG A AC TTAAC T G CC G . G T A A AAAT G T CT G TCTA ATAT T A A AAA AA TTAAT A T ATC G TG A G . T T . TT T AAA TATATTAGAAA ATT T AC C G GT C . A T TATA T T C TGCATGA T TTCTGCA G C . A C A AAAAAA GT A AATAA GG AA AACT . A ATAATA C TGGTGGCAA TAA C C AC T A CAAC CGCGTAAAGC G A G C TA . C TT ATAGAG AA C AAGA A AA T GT T . G TC CG AC AA TTA AC GTT T TA ACATCTAC A A C ATCGT T A A CTATA ATATG A G A C GAG TT C T TC G C G GC T GGTAA TG A . AAAAACATATATATAC TC T . TA A AC TAGAAAGCG C CCGAACTCG C GGA C . C CA C A TT . A AAT GG TA GC . A . . ACAG C T CG C TCGAGACTAGTCAAGGTTCTGGA . CG CCT A C G GTT A G TCTT . CGATTTG G A G TG . C G C AA GTTG GGCTT T . C G AAG . . T C . GT . GT . G . . . G T C . . . T . A T G . CG GA G A C . T . . T . GG . A G TG GGT T GT A T T ATAA G T T C TTCG . G C A . CTATGCAT . G . TC
blockSeqs : AT . G . . . . . GACTCCGTAACGGTACACAT T T . TTTCAT . . A . A . . . T . . . G . TTA . GACAA G . T T A AAA . . . . . G . . . G . . T A C AA T TAATTACTGATGAACA . . . TGA . . C . . . C A A ATGA . A . . . . T . . ACAT . . . . TATC . . . . . . TTAA . . T . . . . . . T . . . . AAAA AT . . . G T . . A . TA . G G . . CTA . C . . A . TG A . AAAG GA A . . A . . CACAT TT . . . . . . ATTAATTA . G . C . . . . A . . AGA A AA T . . . . T . C GT GT . TG T T AATCAA . . . CAGTT . . . ACAT AAAT . T . C . . C . . . . . . T GC . . . TT . . . . . . . TT . . . . . . . . CTT G . . . . . . . . TC GT . . . . . . G . . A T TG . G . A . T . . T T ATT . . . G . C . G
blockSeqs : A . G . . . . . TGAATCCATTTTATA T . . ACGAT . . C . C . . . . . . . T T G . . . . . . G . . . . . . . . . A . AACA . . . . . . T . . . . . A AC . G . . . . . . . AT . . . . TCT . . . . . . TGT . . . . . . . . . T . . . . T T . . . G T . . . . T . . G . . CAA . C . . A . . T . AA AA . . . A . . AA T . . . . . . GGGCATAA . A . . . . . . . . . AGA A . T . . . . T . C A GT . GA . T TCACA . . . GGTG . . . CAT ATT . . . .
blockSeqs : A . G . . . . . CATTTTATA A . . TAT . . C . A . . . . G . . . . . . G . . . . . . . . . . . . . . . . . . . GC . A . . . . . . A . . . . T . . . . . . . . . . T . . . . A . . . . . G . . . . . . . . . . CA . A . . A . . T . CA . . . . . . . AA A . . . . . . GCAA . . . . . . . . . . G . T . . . . A . T A T . GG . . ATCA . . . AATG . . . CAT C .
blockSeqs : A . . . . . . . A . . . GAT . . A . A . . . . . . . . G . . . . . . . . . . . . . . G . . . . . . . C . C . . . . . . . . . . . . . C . . . . . . A . T A T . TG . . . . AGT . . . . A .
blockSeqs : . . . . . . . GA . . . . G . . . . . . . A . . . . . . A . T G T . G .
blockSeqs : . . . . G . . . . . . A . . . . . G .
blockSeqs : . G
blockSeqCons : GANTCCGTAT******************* GAT********* C******** C** AC****** G** AT**** TT***** T* T** G** T*** CA******* A* NGTAA************ ** ATCAA******** AGTG** CAT**** ATAT***
originalCons : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT--GA-TCCATN----------T-ATA---ATATATG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TA--------TAATG-GTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGTG-ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAATTCTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATAT-ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTC--TAATA-ATA-AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT---G----TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAA--A--C-A-----AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-A-AGTGTGA-ATGCA-TT-ATATG-C-A-T-ATCATATA-AT--TATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
finalCons : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCTGANTCCGTAT-------------------ATATATG-AT-AATAGAT---------GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG-TAC--------AATG-GTGATCAAA-C-TAAC--CTAGTCCATGTGA-ATAAC------CAT-AAAGTG--TG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAAT----A-TG-GA--TA-ATATT-----AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAAT-CTT-AAT--GCAAAATTATAGGATTT-AC---TATTTTAGATT----------A---TATT--ATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAA-ATCTCT---ATA-ATA-AGTCAACCG-------AA-CAACTTCA-------G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AATA-AAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATTNGTAA------------GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACT-GAAATCAA--------AATTAAAAATCAAATAATGGTAATGCA-CATATGC-AC-AAGTG--GA-ATGCA-TT-ATATGCAT----ATCATATATAT---ATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Alignments
lowQualScore : 111111111111111111111111111111111111
lowQualScore : 1111 11111 777777777777777777777777777777777 11 1 222222222222 111111 111 111111 3333 1 1 1 2222222222222222 1 1111 22222 111 111 11 22222 222222 11 000000000000000000000000000000000000 222 1111 4444444444 222222 22222222 1 11 11 111111 11 444444 1111 1 111 22 111111 1 1 222 11 1 11 5555555555555555 1 11 111 1 111 22222 2222222 222222222 222222 22222 11 11 1111 11 111111 222222222222 1111 11 1111 44444444444444 1 11 111111 4444 11 1 11 11 1111 111 1 111 1111111 1111111 1 222 11 1 11 1 11 33333333 11 1 1 4444444444444444 11 1 11 333333333 333333333 111 1 1 1 11 11 1 1 222 11 11 11 1 1 1 2222 111 55555555555555555555555 1 11 111 1 44444 1 2222 1 2222222 1 11 1 1 11 1111 44444 1 1 1 222 1 1 2222 1 1 11 1 11 222 1 11 1 11 1 11 1 1 1 1 222 11 11 1 1 1 1 1 1 1 22 1 1 111 2222 3333 11 2222 1 1 1 22222 1 1 1 222 7777777777777777 11 1 3333333333333
lowQualScore : 1111 6 22222 6 77 5 5 5 0 0 6 7 222222222222222222222222222222222 44 5 1 5 444444444444 0 5 666666 6 000 3 666666 6 5555 7 3 0 6 7 2 0 333 0 8888888888888888 1 0 0 0 6 4444 1 88888 6 6 6 6 6 2 111 0 6 6 888 6 6 33 44444 7 222222 33 555555555555555555555555555555555555 6 99 99 333 6 4444 2222222222 8 0 8 8 0 777777 88 00000000 6 11 11 8 0 8 8 3 8 8 333333 8 8 11 8 777777 0 7777 8 8 0 777 33 333333 0 0 222 8 0 11 8 6 8 8 8 8 11 0 0 8 0 5 0 7777777777777777 6 8 0 11 8 444 88 8 8 0 0 88 444 88888 5 0 6666666 6 111111111 6 2 6 6 3 6 888888 77 6 11111 00 55 4444 6 44 999999 6 666666666666 5555 8 8 11 8 8 7777 33333333333333 8 6 0 8 2 33 8 5 77 0 999999 66 5 4444 1 33 5 66 5 5 5 55 11 0 66 11 0000 66 333 0 8 8 8 0 88 7 6 6 6 6 666 6 6 6 5555555 3 7777777 3 6 9 0 2 333 88 6 3 88 3 6 6 88 7 33333333 88 5 5 8888888888888888 88 1 5 88 1 22 777777777 2 666666666 1 999 5 5 5 88 1 1 88 5 5 111 77 88 22 88 3 0 3 3 0000 6 7 888 3 99999999999999999999999 3 88 666 7 6 3 88888 7 0 3 4444 3 7777777 6 3 6 88 3 6 3 6 88 4444 88888 7 3 3 3 111 5 5 2222 5 5 88 5 88 111 5 77 5 88 1 5 1 88 5 5 5 5 1 1 111 88 22 88 5 5 1 5 5 5 5 7 3 00 3 3 1 777 2222 7 1111 7 44 7 2222 3 3 7 2 33333 3 3 3 3 333 4444444444444444 88 6 5 7777777777777
lowQualScore : .... . ..... . .. . . . . . . . ................................. .. . . . ............ . . ...... . ... . ...... . .... . . . . . . . ... . ................ . . . . . .... . ..... . . . . . . ... . . . ... . . .. ..... . ...... .. .................................... . .. .. ... . .... .......... . . . . . ...... .. ........ . .. .. . . . . . . . ...... . . .. . ...... . .... . . . ... .. ...... . . ... . . .. . . . . . . .. . . . . . . ................ . . . .. . ... .. . . . . .. ... ..... . . ....... . ......... . . . . . . ...... .. . ..... .. .. .... . .. ...... . ............ .... . . .. . . .... .............. . . . . . .. . . .. . ...... .. . .... . .. . .. . . . .. .. . .. .. .... .. ... . . . . . .. . . . . . ... . . . ....... . ....... . . . . . ... .. . . .. . . . .. . ........ .. . . ................ .. . . .. . .. ......... . ......... . ... . . . .. . . .. . . ... .. .. .. .. . . . . .... . . ... . ....................... . .. ... . . . ..... . . . .... . ....... . . . .. . . . . .. .... ..... . . . . ... . . .... . . .. . .. ... . .. . .. . . . .. . . . . . . ... .. .. .. . . . . . . . . . .. . . . ... .... . .... . .. . .... . . . . ..... . . . . ... ................ .. . . .............
lowQualScore : 8888 7 55555 7 99 7 7 7 7 1 7 5 666666666666666666666666666666666 44 7 4 7 000000000000 4 7 444444 6 000 6 444444 7 3333 3 3 7 7 3 5 0 888 0 7777777777777777 0 0 8 8 0 8888 0 33333 7 7 7 7 7 5 777 8 7 7 333 7 7 22 55555 0 222222 22 555555555555555555555555555555555555 7 22 22 333 7 2222 8888888888 0 8 0 0 8 888888 88 22222222 0 00 00 0 8 0 0 2 0 0 888888 0 0 00 0 888888 8 0000 0 0 0 555 88 222222 0 0 000 0 8 00 0 0 0 0 0 0 00 8 8 0 8 6 8 2222222222222222 0 0 8 00 0 222 66 0 0 6 8 88 000 00000 0 8 0000000 7 888888888 7 5 7 7 2 7 333333 77 7 00000 88 88 2222 7 00 222222 7 888888888888 2222 0 0 00 0 0 0000 66666666666666 0 4 8 0 5 88 0 7 99 7 444444 99 0 1111 1 88 5 99 0 0 0 55 99 1 11 11 1111 11 000 0 0 0 0 6 88 3 7 7 7 7 888 7 7 7 0000000 2 0000000 2 7 2 0 5 333 33 7 3 33 3 7 7 33 3 77777777 00 5 5 0000000000000000 00 0 0 55 0 00 555555555 5 555555555 0 000 0 5 0 00 0 0 55 5 5 555 55 55 00 00 3 7 3 3 0000 7 3 333 7 33333333333333333333333 3 33 000 3 7 3 77777 3 7 3 0000 3 7777777 7 3 7 33 3 7 3 7 33 7777 33333 3 3 3 3 000 5 0 0000 0 5 00 0 00 555 0 55 5 00 0 5 0 00 0 0 5 5 0 0 000 00 00 00 0 5 0 0 5 5 0 3 3 00 3 3 0 777 0000 3 0000 3 77 3 7777 3 3 3 0 33333 3 3 3 7 333 7777777777777777 33 7 5 5555555555555
consensus : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT-GANTCC--------------GT---A----------TA-TA-TA-TG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG----TA----C-----AATG-GTGATCAAA-C-TAACAGCTAGTCCATGTGA-ATA---A-C--CAT-AAAGT--ATG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-T----AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GCAAAATTATAGGATTT-ACTATTTTAGATT------------G---TATATATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAAATCTCT-AT---AATAT----AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT-G---TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACTG-AA-ATC-AAA-ATTAAAAATCAAATAATGGTAATGC-ACATATGC-AC-A-AGTG-GA-ATGCA-TT-ATATG-C-A-T-ATCATATA---TAT-ATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
Reference ( family-2292 ) : TCTTGAT--A-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-GGCGTTTAATTAGCT-GANTCC--------------GT---A----------TA-TA-TA-TG-AT-AATA--G---AT----GACAAGCCCTGTAACA-ATAGTA------TAACAATNATTA---GATATATG------TAGAAATCA-TAAAATACAATA---GTCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAAGGGAGATAA-CTCTGCTTTATA-CAAAGT-AAACACATATG-CANCATT-AAATACACAAATGCATCTCCCAATATTTT---ANCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG----TA----C-----AATG-GTGATCAAA-C-TAAC--CTAGTCCATGTGA-ATA---A-C--CAT-AAAGT--GTG--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAA--A--TA-TG-GA--TA-ATAT-T----AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GCAAAATTATAGGATTT-ACTATTTTAGATT------------A---TAT-TATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TCAAAATCTCT-AT---AATA-----AGTCAACCG-------AA-CAACTT-----C-A-G-ACTCCT-GAC-AAAGACT-GA------GN-AC-AATACAAAGAANA---CTTGGAGGGGAAAAATCCC--AAA----CC-AAT-AAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATTNG---TA---A---GACT-CGATGGACAACT-TGGCCAAG--AC-ATA-ATTA--GGGACC------TT--GGG-CACTTGCTACCAGAGGACA---TAAGAGAA--CTCACCAAGTG--TT-A-TG-CCTG-ACC--GAATA-CGGAG-TT-T--AAA--CCCATTGG-AAGGATTGTATCATGAA-ATACTG-AA-ATC-AAA-ATTAAAAATCAAATAATGGTAATGC-ACATATGC-AC-A-AGTG-GA-ATGCA-TT-ATATG-C-A-T-ATCATATA---TAT-ATAATAAA-TTACTTCTG-CCACATTCTCCCCT---TGGTGTAAGAAT--GGCG-CCCGCGCCATTCCAGGAA--CCCGA-ATGTGACTGACGGCAG--AGTAATACCGGTAA---GTAATGAATATATAATTTGAATGATAAAAACATATATATACAATTCAANAACACTTACTATTACCGGAAATNGATANNTTACAAGAGCTAGAAAGCGCTCGGACCGAACTCGTNTAACTGNGATTGTCCCTGTACGGCTCCCGCTTTCACCNTCAANGGTTCTGTAAAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTNNTGACATACCACAAAATCTC-TCG-TCCA-TCNC--GGTTTGGCCTTTAAATCTCG-TTGATCATTCTAGGAGCGGGTT-GAGAC--GT--AGGTTCTGG-ATGTAGGTT-CTGGATCA--CGCTGGT-CTTCTGAATCCTTCATGATCCTCTGT-GAATGC--G--GGATAAACCGTCTGGCGTGTC-CGACTC--TTCTTCT-GACTC-ATT--GACCAGGT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCC-TCCTTCT-GTCTTC--GGAAGTC-TCGTAAG----GGGTGGTGGTTACCGG-TA-CCCAAAACAT-AATGAAAATCTGCAAAAGAAAAGCTCTCACTTGATCGTATCCTCTGTATCACTAGANAATACTGAGTTCAGTACGGCTTCCTTCTTCCTTGCTCTACATCTCGTGCTTAGGAATAGGGGCTGGTAGTTTCGATATGGCAGATAGGGAGTCCGGAGGTATCCTCCTANGTAAGGTTCTACTCCTGCCTTCCTCNATCCCCTCTCTTCAACCCTGAACAACAGCGGGGTGTGTCTAGNTGNGGGCTGTGGCTCACGTTANNATGAGGGGTGATCCTCCACATCNTGTCAGCGAATCTTCGTGCTCTTCCCATCGAACGCCAACAACTTTGACCAAT-ACCC-GGTC-TCCAACCTGT-ANCTCGGC-T-CCCTTGTGTTTCTCATGGT-CAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTGTTCCTAATCGCTGT-TC--GGC-AAGTTCATA-GCATTTTCT-AGGCTCGGTTTTAG---ATTCT-CTATG-----C-T--GGA--TGTACTTGTGGGACTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|1 : TCTTGAT--G-GGA-TGATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAC-AA-AGCGTTTAATTAGCT-GAATCC--------------AT---T----------TA-TAATAATG-ATCAATAAAG---AT----GACAAGCCCT-TCATA-ATAGTA------TAACAATAATTA---GATAT----------------TA-TAAAATACAATA---GTCGCTAT-GCTGAAT-AATTGATGTACAATTAATGCTAGCAAATTTAAGACTTGAAGGGAGATAAACTCTGCTTTTTATCAAAGT-AA--TCATATG-CACCATTAAAATACACAAATGCATCTCCCAATAATTT---ACCT-----TTAACTATG-AATAAAA-TAT-TATA-CT-TA---CCATCATGCTTATCATG-ATA-TA---AACA-T-TACAGTT-ATACTAGG----AAATATAT-A----CAATA-TGAGT--T--------------A------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAGCTATTA----CGTATTAATGCGTGATCAAA-C-TAATAGCTAGTCCATGTGA-ATA---ACC--CATAAAAGTACATG--AGA-CTGC--GTTAATTAAATAACTTAACAA-TTTGCACTTTATG-AA-TTATCAT-AAA--A--TA-TG-GA--TA-CTAT-TCTTAAAAACACATG----ATAGTGAGACAGAT-AAT-AA-GTTGTTTCA-TCTATTTA---CACTTTAT-TAG-T-AA-AAT-AAGTACCTTT-CTCACTA---TTCA-CTTA-TCAGA--AT-GAAGTGCCACGGCGA-AATTAATTCTTAAAT--TCAAAATTGTAAGATTT-ATTATTTTAGATT------------G---TATATATTAGTAGTAATAAATTT-TGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAAGTTTG-GAA-TGTCACAAATGTTCAAAATCTCTAAT---AATA-----AGCC-ACTG-------AA-CAACTT-----C-A-G-ACTCCTGGAC-AAAGACT-GA------GA-AC-AATACAAAGAACA---CTTGGAGGGGAAAAATCCC--AAA----CCGAATAAAAAAAC------TCTAG-ATACA-------AA---AC-T--A-A-A--CA-CCAAT-GAA----ATT-G---CA---A---GACT-C-ATGGATAACT-TGTCCAAG--ACTATA-ATTA--GGGACC------TT--AAG-GACTTGCT-CCAGAGGAC----TAAGAGAC--CTCACCAAG-G--TT-AGTG-CCTG-ACCA-GAATA-TGGAG-TT-T--AAA--CCTATTGA-AAGGATTGTATTATGAA-ATACTG-AA-AC---AA-ATTAAAAATCAAATAATGGTAATGC-ACA-ATGC-AC-A-AGTGTGA-ATGCA-TT-ATA-G-C-ATT-ATCATATACATTGT-ATAATAAA-TTACTTCTG-CCATATTCTCCCCT---TGGTGTAAGAAT--GG-G-TCCGCGCCATTCGAGAAA--CCCGA-ATGTGACTGACAGCAG--AG-AATACC-GTAACTGGTAA--AATAT-TAATTTGAATGAT-------TA-------AAT--AAAAACACTTAC--TTACCGGAAATTGATACGTTACAAGAGC---------CTTGGA---------TGTAACTGT--TTGT-CCTGTACGG-TTCCGCTTT--CCATCAATGG--CTGTAAAGTAAGTGGCTCTTTGT-AACCAA---TCT--GGGTGTTCTG--GTTGTGACATACCACAAGATCTC-TTGTTCCATTCCT--GGTTTGGCCCTTAATTCTCGTTTGATTCTTCTAGGAGCGGGTT-GAGAT--GT--AAGTTCTGG-ATGTAGGTTGCTGGATCA--CGCTAGT-C-TCTGAATCCTTCATGATCCTCTGT-GGATGCCGA--GGATAAACCACCTGGCGTGTC-CGACTC--TTCTTCTGGACT--ATT--GACCA-GT-TCTTGTAACAT--GACCGTGACGTCATCAGGAGCGTCCTTCCTTCT-GTCTTC--AGAAGTC-TGGTAA-----GGGTGGTGGTTACCGGTTA-CCCAAAACAT-AATGTAAATCTGCAAAAGAA---CTCTCACTTGATCGTATCCTCTGTATCACTAGAAAATACTGAGTTCAGTA-GGCTTCCTTCTTCCTTGCTCTACATCTC--GCTTAGGAATAGGGGCTG--AGTTTCGATATGGCA-ATAGGAAGTCCGAAAGTATCCTCCTATGTAAGGTTCTACTCCTGCCTTCC-CAATTCCCTCTCTTTAACTCTGAACAACAGCGGGA-GTGTCTAGTTGAGGGCTGTGGCTCACGTTAGTAT--AGGGT-ATTCTCC-CATCATGTCAGCGAATC-TCGTGCTCTTCCCATCGAACGCCAACAACTCTGACCAATCACCC---CCATCTAACCTGT-ACCTCGGCTT-CCCTTATATTTCTCATAGTACAATATAGTATGTGCTT-T--TGCC-GACTC-TGATTG-TCCTAAT-GCTTT-TC--GGCAAAGTTCATA-GCATTTTCT-AGGCTCTGTTTTAGGAAATTCTGTTATGTGAGAC-TTGGGAAGTGTACGTGT-AGATTGACGTGGAAGGTTTTTCTCTCTTTGTCCAAT
gi|10 : TTGAT--A-GG---GATA------AATAACCAACTCCTGTTTGGG--GCACGT-GAC-AA-GGCTTAAAATTAGTT-AACTCCATAACGGTACACATGT---A----------TA-TG-TA-TGTAT-ATTT--T---AT----AATAAGCCATGTAACA-ATAGTA------TAACAATCATTA---TATACATGTGTGTATAAAGATCA-TAAAATACA
gi|11 : taacagggttttgttgatagACTTTGACTTAT-ACCC-GGTC-TCCAACCTGT-AGATCAAC-T-ACCTTG-GTTTC-CATG---C--CATAGC-TGTGCTTATAATGCT-GACTCTTGACTGTTGTTTATCGCTGTATT--GGC-AAGTTTATAGGCATTTTCT-AGGCGAACCTTGAA---ATTCT-C---------------GA--TGGACTTGTGgaat
gi|12 : gcagt-ATA-ATTATTAGGAC-------TT--GGG-CACTTGATAACAGAGAACAGA-TAAGAAAAAACTCAACAAGTGGTTT-A-TG-CCTG-TCCCGAAATAACGGAA-TTGT--AAA--TCCATTTG-AAGGATTGTATCATCAATATAtccatggtccaacccaaat
gi|13 : -ATTA--GG-ACC------TT--GGG-CACTTGATAACAGGAGAAAAGATAAGAAAAAACTCAACAAGTG--TTTA-TG-CCTGTCCC--GAATA-CGGAAATT-T--AAA--TCCATTGA-AGGGATTGTATCATCAATATAatatatatatatatatataaaatgattattgtgattgaaaaccatcta
gi|14 : aatTTGAT--ATGGA-TGATAT--G--AAAAACCAACTCGTGTT-GAG--GTTCGT-GCC-AA-TGCGTTCCATCA-C---ATTTT--------------AT---A-----------A-TA--A-TG-AT-------G---AT----AACAATCCTTGTAACA-ATAGTA------TAACAATAATCA---GATATATG------TAGAAATCA-TAAAATACAAatatatatatatatatataaaatgattattgtgattgaaaaaccatctag
gi|15 : gttttttttttattg-CAACTT-----CTA-A-ACTT-T-GAG-AACAACT-GAAAAAAAGA-AC-AAAAACAAGAAC----CTTGGAGGGGGAAAATTCC--AAAAACTCC-AAT-AAAAAAC------ACAAGCATATATGGTGGCAA---ACTT--A-A-AACCA-CCACT-GAA----ATTAT---TAATTA---GACT-CAAGGGAAAACT-T
gi|16 : ACC------TT--GGG-CACTTGATACCAGAGAACAGA-TAAGAAAA--CTCACCAAGTG--TT-A-TG-CCTG-TCC--GAAGA-CGGAA-TTGT--AAA--TCCATT-G-AAGGATTGTATCATTCA-ATAtc
gi|17 : --AAA--GCCATTGTTAAGGATTGTATTATGAA-ATACGC-AACATCTACA-ATTAAAAAAC-AAT-ATGGTAATGCAACATATGC-AC-A-ATCGTGA-ATGCA-TT-ATATG-CTA-TAATCATATA---T-T-AT-ATAAA-TTACTGCTGACCACtatatatatatatatataaaatgatattgtgattgaaacccatctag
gi|18 : CCATTG--AAGGATTGTATTATGAA-ATACTG-AA-ATC-AAA--TTAAAA-TCAAATAATGGTAATGC-ACATATGC-AC-A-AGT--GA-ATGCA-TT-ATATG-C-A-T--TC----A---TAC-ATAATAAA-TTACT
gi|19 : G--GTTCGT-GAC-AA-GGC-TTTAATTAGTT-GACTCC--------------GT---AACGGTACACATG-TA-TA-TGTAT-AATA--TTTCAT----AATAAGCCCTGTAACA-ATAGTA------TAACAATCATTA---GATACCTG------Tcg
gi|2 : gAAACAAGAGGGAAAACCGTCCAGTCTCAA---TTG-TAA-TGTCACAAATG-TCACAATCTC--AT---AATA-----ACTGAATCGTGCATGAAA-CA-CTT-----C-AAG-ACTCCT-GAC-AA-GACTAGA------GGTAC-AATACAAAGAAAAAG-CCTGGAGGGGAAAAATCCC--AAA-------AAC-AAAAAACATAATACACAC-ATACA-------CACATAC-T--ACACA--CA-CCAATAGAACAACATTCGCG-TA---AAGCGACT-CGATGG-CAACTGTGGCAAAG--AC-ATACATTA--GGGACC------TTAAGGG-CA-TTGCTACCAG-GCAC----TAAGAGAA--CTC-CCAAG-G--T--A-TGGCCTG-ACC--GAATA-TGGAA-TT-TTAAAA--CCCATTGG-AAGGATTGTATTATGAA-TTACTA-GA-ATC-ACACATTAAAA-TCAAATAATGGTAATG--A-ATATGC-ACCACAGTT-GATATGCAATT-A-ATG-------AT--TATA---AAT-ATAATAAAATTACCTCTG-C-ACATTCTCCCCTGAGTGTTGTAGCAATTTGGCGTCCCGCGCCATTCCAGGACTCCCCGAGATGTGA-TGACG-CAGGCAGTAATACCGC------GTAATGAATATATAATT-GAATGATAAAAACATATATATACAATTCAATAACA-TTACTATTACCGGAAATAAATAACTTACAAGAACTAGAAAGCGCTCCGACCGAACTCGTCTAACTGGGATTGTCCCTG-ACGGCTCCCGCTTTCACCCTCAAAGGTTCTGT-AAGTAGGTGGCTCTTTGTAAACCAAAATTCTGGGGGTGTTCTGTAGTGCTGACAT--CACAAAATCTCATTG-TCCA-TCACAGAGTTTGGCCTT--AATTTCG-TTGATCATTCTAGGAGCAGGTTCGAGACTAGTCAAGGTTCTGGAATGTAGGTT-CTGGATCACGCGCTGGTCCTTCTGA---CCTCATGATCCTATGTGGAATGC-----TGATAA--CATCTGGCATGTCGCGACTCTTTTCTTCT-GACTC--TT--GACCAGGTATCTT-TAACATTGGACCGTGACGTCATCAGGAGCGTCC-T-CTTCT-GT-TTCAAGAAAGTCGTTGTAAGGCTTGGGTGGTGGTTACCGG-TACCCCAAAACATGAATGAGAATCTGCAAAAGAAAAGCTCTCAC-TGATC-TATCCTCTGTATCACT---TAATACTGAGTTCAGTACGGTTTCCTTCTTCCTTGCTC-ACATCTCGTGCTTAGGAATA-GGGCTGGTAGTTTCGA---AGCAGATAGAGAGT--GGAGAT-TCCTC--AGGTAAGGTTCTACTCCTGCCTTCCTCCATCTCCTCTCTTCA--CCTGAA-AACA-CGGGGTATGTCT-GATGTGGGC-G-GGTT--TGTTACGATGAGGGGTGATCCTCCACATTCTGTCAGC-AATCTTTGTGC-CTTCCCATCGAACG-CAACAAC-TTGACCAAT-ACCCGGGTC-TCCAACCTGTAAACTCGGC-TGCCCTT-TG-TTCTCAT-GT-CAATATTGTA---GC-T-T--TGCCGGACTC-TGATTGTTCCTAATTGTTGT-TTCGGGC-AAGTTCATA-GCATTCTCTCAGGCTCGGTTTTAG---ATTCT-CTATG-----CAT--GGA--TGTACTTGTGGGACTG-TGTGG--------TC---CTTTGTCCAAT
gi|20 : -CCATTCCG--TTGTACTACATGTAGACCAT----TA----C-----AATG-GTGA----A-C-T--------GCCCATGTGACAGA---A-C--CAT-ACAGA--GTGCCAGG-TTGTAAGTTAATTAACTAATTT-ACAA-CTcca
gi|21 : T---A----------TA-TA-TA-T--AT-AATA--G---ATTTTTATTAAGCCCTGTAACA-ATAGTACATGTATAACAATCATTATAAGATATATG------TAGAAATCA-TAAAATACA
gi|22 : atatatataAAGGGAGATAA-CTCTGCT---CA-CAAA-T-GAACACA
gi|22 : CACAAATGAA-CACACAATATTT----ACCT-----TTAACTATG-AATAAAA-TCT-T-TA-CTCTA---CCATCATGTTTATCATG-ATA-TA---CAGA-T-TAcaatatttacctttaactatgaataaaatctttactctaccatcatgtttatcatgatatacagatta
gi|23 : aagggagataactctgct-AAATACACAAATGCATCTCCCAATATTTTTAAAACTAAA--TTAACTATG-AATAAAA-TCT-T-TA-CTGTA---CAACCATGCTTATCATG-ATA-TA---AACA-T-TACAGT
gi|24 : A-ATTA--GATACCATAGAGTT--AGA-CACTTACTACCAGAAAAC----TAAAACAA--CTCACCAAGTG--TT-A-TG-TCTG-ACC--------------------AAA--TCCATT-G-AAGGGTTGTATCATG
gi|25 : aaTTGAT--A-GGAATTATATTTGTTAAAAATCAACTCTT-TT-GAG--GTTCGT-GGCCAA-GGCGTTTAATTt
gi|26 : tgttg--------------A------------------TA-CCATTCTG--TGGGA--ATA---AG-CCAG----TA----T-----Ac
gi|3 : ggacTCTTGATTGG-GGA-TAATAT--G--AAAAACCAACTCCTGTT-GAG--GTTCGT-GAA-AAAGGCGTTTAATTAGCT-AA-------------------------------------TA--A-TG-AT-AATAACG---AT----GAGAAGCCCTGTAACA-ATAGTA------TAACAAT-ATTA---GATATATG------TAGAAATCAATATAATACAATATATATCGCTATTACTGAAT-AATCGATGTACAATTAATGCTAGCAAATTTAAGACTTTAA-GGAGATAA-CTCTGCTTTATA-CAAAGTAAAATACATATGTTAACATT-AAATACACAAATGCATCTCCCAATA-TCT---AGCTTTAAGTTAACTATGAAATAAAA-TCT-T-TA-CTGTA---CAATTATGCTTATCATG-ATATTT---AACA-T-TACAGTT-ATACTAGG-----AATATATAA----CAATA-TGAGT--TAATTACTGATGAACA------------------TA-CCATTCTG--TGGGA--ACA---AG-CCAG----TATACGT-----AATG-GTGATCAAA-C-TAATAGCTAGTCCATGTG--ATA---G-C--CAT-AAAGT--ATA--AGC-CTGCAAGTTAATTAAATAACTT-ACAA-CTTGCACTTTATGCAA-TTATCATAAAA--A--TA-TG-GA--TA-ATATCT----AAAACACATG----ATAGTGAGACAGAT-AATGAA-GTTGTTTCA-TCTATTTA---CACTTTA--TAGTT-AA-AATAAAATATCTTT-CTCACTAT--TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-GA-AATTAA-TCTT-AAT--GC--AATTAAAGAATTT-ACTA-TTTAGATT------------T---TATATATTAGTAGTAATAAATTT-AGTAACTTACCAAACAAGAGGAAAA--CGTC-AGTCTCAAG--TTG-TAA-TGTCACAAATG-TC-AAATTTCT-AT---AATAT----AGTCAACTG-------AA-CAACTT-------G-G-ACTCCT-GAC-AAAGACT-GA------GT-ACAAATAAAAAGAAAA---CTTGGAGGG---AAATCCCA-AAA----CC-AAT---AAAAC------TCTAG--TACA-------AA---AC-A--A-A-A--CA-CCAAT-GAA----ATT-G---CA---A---GA-T-C-ATGGACAACT-TGGCCAAG--AC-AT--ATTA--GGGACC------TT--AGG-CACTTGCTACCAGAGGAC----T-AGAAAA--CTCACCAAG-G--TT-A-TG-TCTG-ACC--GAATA-TGGAG-TT-T--AAA--CCCAT
gi|4 : cagggt-----TTAACTATG-AATAAAAATCTGT-TAGCTGTAGTACAATTATGCTTA-CATGGATA-TAG--AACAAT-TACAGTTGATACTAGG----AAATA-AT-AATAGCAATA--GAGT--T--------------AATTACTGATGAATGAACATAACCATTCTGGATGGGA--ACATGAAG-CCAG----TA----------AATG-GTGATCAAAACATAAC--CTAGTC-ATGTGA-ATATTAA-C--CATTAAGGT--GTA--AGCGCTACAAGTTAATTAAATAACTT-ACAAGTTTGCACTT-ATGCAAATTATCAT-AAA--AAATAGTG-GA--TA-ATAT-CTA--AAAAGAC--------TAGTGAGACAGATTAATGAAAGTTGTTTCAATCTATTTAAAACACTTTAAATAG-TTAATAAT-AAGTATCTTTTCTCACTAATCTTCA-CT-ACTCAAGTGATAGAAGTGGCATGG-GATAATTAA-TCTT-AATTTGCAAAATTATAGGATTTTACTATTTTAGATT------------AAAATAT-TATTAGTAGTAATAAATTTTAGTAACTTACCAAACA-GAGGAAAA--CGTC-AGTCTCGAG--TTGGTAACTGTCACAAATG-TCAAA-TATCT-AT---AATATATAGAGTCAACTG-------AATCAACTTTTCTGC-A-GGACTCCT-GAC-AAAGACT-GATG----GT-AC-AATACAAAGGAAATAACTTGGAGGGAAAAAATCCC--AAA----CC-AAT-AAATAAC------TCTAG-ATACA-------AA---AC-TAAA-A-A--CATCCAAT-GAA----ATTGGGCATA---A---GACTGCATTGGACAACT-TGG-CAAGTAAC-ATA-ATTA--GGGACCA-----TT--AGGCCACTTGCTACCAGAGGAC----TAAGAGAA--CTCACCAAG-G--TT-A-TG-CCTG-ACC--G-ATA-TGGAGTTT-T--AAAACCCCATTTG-AAGGATTGTATTATGAA-A-ACTGAAA-ATC-AAA-ATTAATAAACAAATAATGGT--TGC-ACATATGCAAC-A-GGTG-AA-ATGCA-TTAATATGAC-A-T-ATCAAATA---TATGAAAATAAA-CT
gi|5 : CTA---TTCA-CTTACTCAGG--AT-GAAGTG-CACGG-TA-AATTAA-TCTT-GAT--GCAAAATTATAGGATTC-ACTATTTTAGATTTATATTAGAAATA---TAT-TATTAGTAGTAACAAATTT-AGTAACTTACCAAGCAATAGGAAAA--CGCC-AGTCTCAAG--TTG-GTA-TGTCACAAATG-TC-AAATCTCT-ATAAAAATA-----A-CCAACCA-------AA-C-ACTT-----C-A-G-ACTCAT-GACAAAAGACT-GA------GC-AA-AATACAAAGAACA---CTTGAAGGG--AAAATTCCAAAAA----CC-AAT--AAAAAC------TCTAG-ATACtaa
gi|5 : AAAATCAAATAATGGTAATGC-ACATATGC-AT-A-AATG--A-ACGCA-GT-ATATG-C-A-T-ATCATATA---TA-----ATAAA-TCACT-CTG-CCACATTCTCCCCC---TTGTGTAAGAAT--GGCG-CCCACGCCATTCCAGGAA--ACCGA-ATATGACTGACGGCAG--AGTAATACCGGTAA---gnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntaaaatcaaataatggtaatgcacatatgcataaatgaacgcagtatatgcatatcatatataataaatcactctgccacattctcccccttgtgtaagaatggcgcccacgccattccaggaaaccgaatatgactgacggcagagtaataccggtaa
gi|6 : ctattcacttactcaggatgaagtgcacggtaaattaatcttgatgcaaaattataggattcactattttagatttatattagaaatatattattagtagtaacaaatttagtaacttaccaagcaataggaaaacgccagtctcaagttggtatgtcacaaatgtcaaatctctataaaaataaccaaccaaacacttcagactcatgacaaaagactgagcaaaatacaaagaacacttgaagggaaaattccaaaaaccaataaaaactctagatacgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntTGGT--A-GGA-TGATAT--G--AAAAGCCAA-TCCTGTT-GAGCGGTTCGTTGAC-AA-AGGGTTTAAT-AGCTTGAATCC--------------ATTTTA----------TAATA-AA-TG-AT-AATA--G---A-----GACAAGCCCTGTAACAGATA-TA-------AACAATAATT----GATATGTG------TGAGAATCA-TAAAAT-CAATA----TCGCTATTACTGAATTAATTGATGTA--ATTAATGCTAGCAA-TTTAAGACTGTAAGGGAGATAA-CTCTGCTTTATA-CAATG----ACA-A------AGCATT-AAATACACAAATGCATCTCCC-ATATTTT---AGCT-----TTAA-TATG-AATAAAA-TCT-T-TA-CTGTA---CAAT
gi|7 : gaacaggttttgttgtttgaATAAAATATC-TCG-TCCA-TCTT--GGTTTGGC-TTTAAATCT---------ATTGTAAAATTGGAT-----------------------ATGTAGTTT-CTGGCTTA--CGCTGGT-TTTCAAAATCCTT-ATGATCCTCTAT-CAATGT--GTTGGATAAACCGTCTGGCGTGTA-CGAC-----TCTTCT-GACTCGATTTGGACCAGGT-TTTTGTGGTAT--GACCTTGACGTCATCAGAAGCGTCC-TCCTCTTGGTCTTC--GGGAGTC-TC-TAAGT---TGATGGTGG-TACTGG-TA-CCCAAAATAT-ACTGAAAATCTGCA
gi|8 : TG-ATA-TATGAAATA-TATACAGT-------AGGGGTCAATTACAC-A----AAATACTAAATAAC--------------A------------------TA-CCATTCTA--TGAGA--ATA---AG-CAAG----TA-----------AGG-GTAATCGAA-C-TAAC--T--GTTCATGTGA-CTA---A-TGATAT-AAAGT--ATG--AGC-CTGTAACTTAATTAAAGAACTT-ACAA-CTTGCACTTTATGCAA-TTATCAT-AAAACA--TA-TG-GA--TA-ATATAT----CAAACACATGATATATAGTTAGACAAAT-AATGAA-GTTg
gi|9 : GCAA-TCAACAT-AAA--A---A-TGTGACTTAGATAT------ACATCATATG----ATAGTGAGGTAGAT-AATGAA-ATATCTTGA-TATATTTA---CACTTTA--CAG-T-GT-AGA-AAGCACCTCT-CTCACTA---TACAGTTTTCTCTGG--AT-GAATTG-CACAG-AA-AATTAA-TCTT-AAC--GCAGAATTATAGG---T-AC------AAA-T------------G---TTT-CATCATTAGTAATAAACGC-GGTATCTTAC