lowQualScore : 11111111111111111111111
lowQualScore : 22 22 11111111111111111111111 3 1111 111 11 11 3333333 1 111 88888888888888888888888888888888888888888888888888888888888 11111 222222222
lowQualScore : 77 33 3 11111111111111111111111 1 0 0 6 7777 4 111 1 5 88 33 3 7 3333333 4 66 4 2 4 222 1 22222222222222222222222222222222222222222222222222222222222 8888 55 00000 4 333333333
lowQualScore : .. .. . ....................... . . . . .... . ... . . .. .. . . ....... . .. . . . ... . ........................................................... .... .. ..... . .........
lowQualScore : 55 00 0 33333333333333333333333 2 2 2 0 0000 4 777 0 3 77 44 7 3 3333333 4 33 2 2 0 222 1 44444444444444444444444444444444444444444444444444444444444 5555 55 00000 9 777777777
consensus : NNNNNNNNNNNGTGCATCTCTGATATTGNTT----TACGTGTATTTGGGGNG--AAGTCCGTAAGCTAT-AATTGAA----TNTT---ACTTGATTAGTNATTATCGTGAAATTAAT--T----AAAAACCTA-CTTTCGTTTTCGAT-AA---ACTACCC-TG-----AAATAGC---AAAAG--A---GA-G--------T--AAAG-----T-G---GTGGAC----A--CGCT-----TTGGCGGA-T-----CNAAGCCAGTGCG
Reference ( gi|4 ) : ACTAACTGCTTGTGC--CTTTGTCATTGTTTACCATACATGTATATGACAGG--AAGTCCGTAAGCTATTAATTGAA----TATT---ACTTGATTAATGCTTAATGCGAAATCAAT--A----AAAAACCTA-CTTCTGTATTTAAT-AA---ACTACCC-TGACATAAAATAAC---AACAA--A---GA-G--------T--AAAG-----G-G---GTGGAC----A--CGCT-----TTGATGGA-C-----CAAAGCCAGTGTG
gi|5 : GTGCATTTTTGATATTGTTT----------TATTTGAGGTG--AAGTCCGCGAGCTAT-AATTGGA----TATA---AACAGATTAGTTGTTCTCGCGAAATTACT--T----TAAAATCTA-CTTTT---CTTAAT-GATATACTACCC------CAAAATAGC---AA-AT--A---GATA--------T--CATG-----G-ATTTGTGGAC----A--AACT-----TTGACGGATC-----TAAAG
gi|10 : actctgac--CTCTGATATTGGTT----TACGTGTATTTAGGAGGCGAAGTCCGTAAGTTAC-AATAAAT----TGTT---ACTTGACTGGTGATTAGCGTGAAATTAATTTATTTTAAAAACCTA-CTTTTGTTTTCAAT-Ataa
gi|6 : G--AAGTCCGAAAGCTAT-GATTGAAATTTTTTT---ACTTCATTAATAATTAACGTAATATTGCT--T----AAAAATCTAACTTTCCTATTTTAT-AAC--ACTAACCATAGCAGAAAATAATGAAAATAG--A---GA-G--------T--TAAT-----T-C---GTGGAC----A--CGCT-----TTGGTGGgggtc
gi|1 : ctctgacacgcatgcttgcatctttgatgttCCGTAAGATAT-AAT---A----TATTTTTACATGATTATTGATTAGAGTAAAATTAAA--T----TAAAACTTA-CTTTTGTTTCCAGT-AA---GCAACCC-TG-----AAATAGCAA-AACGG--A---GA-G--------T--CACG-----T-T---GTGAGC----A--TGCT-----TTCGCAGATC-----TAATGCCCGTGT
gi|9 : TAATTGAA----TTTT---ATTTGATGAGTAATTATTGTTAAATGAAT--T----AAAAGCATA-CTTTCGTTTTCAACAAA---ACTACCT-TG-----AAAT-------------A---GA-G--------T--AAAG-----T-A---GTGGACACGTA--CGCTCAAGATTG-CGGA-T-----CTAAGACAGTGCGtgttttcctttatctttttaattgacaattttaagataatatgagataaatctactgtttatggatatttgaatttgatcttacagaagaaatgatattttataattgttcataaat
gi|11 : TT---AATTCATCAGTTATTATCGTGAACTTAAT--T----AAAAGTCTA-CTTTTCTTTTTGAT-AA---ATTA------GCATAAA-------------------GA-G--------T--AAAGTTCTTGCA---GTAAAC----A--CACT-----TTGATGAA-T-----TGAAGCCAGTactt
gi|8 : TTATTGTGAGGTTCAT--T----AAAAGCCTA-CTTTCGTTTTCGAT-AC---ACTACTC-TG-----AAATAAC---AAAAG--G---GA-G--------C--AAAG-----A-A---TTAAAC----A--CATT-----GTGACAG--CTTTCTTAAAGCCAATGacga
gi|14 : atatgaaAAAACTTA-TTTC-GTTTTCTAT-AA---A-TAACC-TGA-----AATAGC---AAAAA--ATGAGA-G--------G--AAGG-----G-G---GTGGAC----A--CACT-----TTGGCGGA-T-----CTAACCTAATGcaattctttttttttttttttatttaaatttt
gi|13 : tAAATGTA-CTTTCGTTTTCGAC-AA---ACGGCTT-T----CGAAATAGC---AAAAA--T---GA-G--------TGTAAAA-----T-G---GTGGAC----A--CGCT-----TTTGTGGA-T-----Cc
gi|3 : TTTTGTTTTTG-T-AA---GCTACTC-AGA-----AATAGC---GA-AA--A---GA-GAGTACATGT--AAAT-----T-G---GTGGAC----C--CGCT-----TTGGTGGA-T-----CTAAACCAGTGtacgctgatttttt
gi|7 : AATACC---AAAAATGA---GC-G--------T--AAAG-----T-G---GTGGAC----AACTGCT-----TTGGCGGA-T-----CTAATCCAATgtatggaaacatcatattgaaacaagatatattatatgtacggctaacgcatgcttgtcgtaatttcccgcgcttgcgcgggtgttctatcctatatatgttgtatgggagatgttgatacatgtatttgtgt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|2 ): ACTTCTTGACGTGGCAATTTTTGAATTGTTTTAATTGTGATGGTGAAAGTCTTACGAGCTTTAGTAATTGAGGAGTATAAAAACAGATGGAGTTCTCGCGAAAAAATTTACGTACACAAAAGTCGTTACTTTTCTTGAGAGAATGACTATTAGTGACCACCAAATAGAATAGTCGACAATAGATATCATGGATTTGGTGGACAAACATTTGAACGGATTCTAAGATA
Unaligned ( gi|12 ): CGATATAACATCTTTGTATATTGTGATCTCCCATGCTTGCGCATGTTCAAACAGTATCTGTGTGTGAGAGTATGCATGTGCGCGTGTATGTGTG
Unaligned ( gi|15 ): GACCCGTTGCTTATCGATGTACAGAAGAAATGTTTTAAATTAGCAGTTATTGAATAAATAAGATACTAGATGCCTTTTAGTTTCTTT
Unaligned ( gi|16 ): ATCTACTGTCCAGAAATAGCGAATCTGTGGACACGCCTTGGCGAATCTAAGTACTTCATTGCTATATGGAACCATCATATTGA
Unaligned ( gi|17 ): ATTATCATGAAATTATTCAAAAATCTATTTCGTTTTCTAAAGACTACCCTGAAATAAAAGAAATTAAAGA
Alignments
lowQualScore : 11 111 3333333333 2222222 1111 111111 111111111 11111 1111111
lowQualScore : 88 777 1 1111111111 3 3333333 6 4444 1 1 2 222222 3 1 3 3 666666666 44 3 88888 44 888888 1111111 7777 44 7777 7777 1 3
lowQualScore : .. ... . .......... . ....... . .... . . . ...... . . . . ......... .. . ..... .. ...... ....... .... .. .... .... . .
lowQualScore : 55 555 0 5555555555 0 2222222 7 2222 0 0 1 888888 6 6 3 3 777777777 22 1 99999 22 888888 9999999 1111 66 1111 1111 0 6
consensus : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTTGAN--GC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCTA-CTTTCGTTTTCGAT-AA-ACTACCC-T-G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGG----ATCTAA-GCCAGTGCG
Reference ( family-2285 ) : NNNNNNNNNNNGTGCATCTCTGATAT---TGNTT----TACGTGTATTTGGG--GN-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTNATTATCGTGAAATTAA------TTAAAAACCTA-CTTTCGTTTTCGAT-AA-ACTACCC-T-G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGG----ATCNAA-GCCAGTGCG
gi|1 : CCGTAAGATAT-AATATAT----TTTTACATGATTATTGATTAGAGTAAAATTAA------ATTAAAACTTA-CTTTTGTTTCCAGT-AA-GCAACCC-T-G-----AAATA--GC-AAA-ACG-GAGA--GTC------ACGT------TGTGAGC----A--TGCTT----TCGCAG----ATCTAATGCCCGTG
gi|10 : CTCTGATAT---TGGTT----TACGTGTATTTAGGAGGC-GAAGTCCGTAAGTTAC-AATAAAT----TGTTACTTGACTGGTGATTAGCGTGAAATTAATTTATTTTAAAAACCTA-CTTTTGTTTTCAAT-Attgttttcctttatctttttaattgacaattttaagataatatgagataaatctactgtttatggatatttgaatttgatcttacagaagaaatgatattttataattgttcataaat
gi|11 : TTAATTCATCAGTTATTATCGTGAACTTAA------TTAAAAGTCTA-CTTTTCTTTTTGAT-AA-AT-----------------TA--GC-ATA-A----AGA--GTA------AAGTTCTTGCAGTAAAC----A--CACTT----TGATGA----ATTGAA-GCCAGTACGgggtc
gi|13 : AAATGTA-CTTTCGTTTTCGAC-AA-ACGGCTT-TCG-----AAATA--GC-AAA-AAT-GAGT--GTA------AAAT------GGTGGAC----A--CGCTT----TTGTGG----ATCTAC-GCa
gi|14 : AAAACTTA--TTTCGTTTTCTAT-AA-A-TAACC-T-G-----AAATA--GC-AAA-AAATGAGA--GGA------AGGG------GGTGGAC----A--CACTT----TGGCGG----ATCTAA-CCTAATGCtgatttttt
gi|16 : t-ACTGTCC-A-G-----AAATA--GC-----------GA--AT----------C------TGTGGAC----A--CGCCT----TGGCGA----ATCTAA-
gi|17 : atctATTATCATGAAATTAT------TCAAAAATCTA--TTTCGTTTTCTAA-AG-ACTACCC-T-G-----AAAT------AAA-A---GAAA--TTA------AAGtacttcattgctatatggaaccatcatattga
gi|3 : TTTTGTTTTTG-T-AA-GCTACTC-A-G-----AAATA--GCGAAA-A---GAGA--GTACATGTAAATT------GGTGGAC----C--CGCTT----TGGTGG----ATCTAA-ACCAGTGa
gi|4 : GTGC--CTTTGTCAT---TGTTTACCATACATGTATATGAC--AG-GAAGTCCGTAAGCTATTAATTGAA----TATTACTTGATTAATGCTTAATGCGAAATCAA------TAAAAAACCTA-CTTCTGTATTTAAT-AA-ACTACCC-T-GACATAAAATA--AC-AAC-A---AAGA--GTA------AAGG------GGTGGAC----A--CGCTT----TGATGG----ACCAAA-GCCAGTGTGgtatggaaacatcatattgaaacaagatatattatatgtacggctaacgcatgcttgtcgtaatttcccgcgcttgcgcgggtgttctatcctatatatgttgtatgggagatgttgatacatgtatttgtgt
gi|5 : actaactgcttGTGCATTTTTGATAT---TGTTT----TA------TTTGAG--GT-GAAGTCCGCGAGCTAT-AATTGGA----TATAAACAGATTAGTTGTTCTCGCGAAATTAC------TTTAAAATCTA-CTTTTCTTAATGAT-AT-ACTACCC-C-A-----AAATA--GC-AAATA---GATATCATG------GATT------TGTGGAC----A--AACTT----TGACGG----ATCTAA-
gi|6 : actctgacCTCTGACACGCATGCTT-------GCATCTTTGAT--GTTGAAGTCCGAAAGCTAT-GATTGAAATTTTTTTACTTCATTAATAATTAACGTAATATTGC------TTAAAAATCTAACTTTCCTATTTTAT-AACACTAACCAT-AGCAGAAAATAATGA-AAATA---GAGA--GTT------AATT------CGTGGAC----A--CGCTT----TGGTGG----agtaa
gi|7 : AATA--CC-AAA-AAT-GAGC--GTA------AAGT------GGTGGAC----AACTGCTT----TGGCGG----ATCTAA-TCCAAT
gi|8 : gATTATTGTGAGGTTCA------TTAAAAGCCTA-CTTTCGTTTTCGAT-AC-ACTACTC-T-G-----AAATA--AC-AAA-A---GGGA--GCA------AAGA------ATTAAAC----A--CATTG----TGACAGCTTTCTTAAA-GCCAATGCttttcttattgacgtaaaatgatacgacatgtaaatccgttgtttatcaatgctacagaagaaataaatgttgataattatttaataaataaaaaaatgcctgttcatttctt
gi|9 : atatgaT-AATTGAA----TTTTATTTGATGAGTAATTATTGTTAAATGAA------TTAAAAGCATA-CTTTCGTTTTCAACAAA-ACTACCT-T-G-----AAAT---------------AGA--GTA------AAGT------AGTGGACACGTA--CGCTCAAGATTGCGG----ATCTAA-GACAGTGCGaattctttttttttttttttatttaaatttt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ACTTCTTGACGTGGCAATTTTTGAATTGTTTTAATTGTGATGGTGAAAGTCTTACGAGCTTTAGTAATTGAGGAGTATAAAAACAGATGGAGTTCTCGCGAAAAAATTTACGTACACAAAAGTCGTTACTTTTCTTGAGAGAATGACTATTAGTGACCACCAAATAGAATAGTCGACAATAGATATCATGGATTTGGTGGACAAACATTTGAACGGATTCTAAGATA
Unaligned ( gi|12 ): CGATATAACATCTTTGTATATTGTGATCTCCCATGCTTGCGCATGTTCAAACAGTATCTGTGTGTGAGAGTATGCATGTGCGCGTGTATGTGTG
Unaligned ( gi|15 ): GACCCGTTGCTTATCGATGTACAGAAGAAATGTTTTAAATTAGCAGTTATTGAATAAATAAGATACTAGATGCCTTTTAGTTTCTTT
Alignments
lowQualScore : 11 111 3333333333 11 11 1111 111111 11111111111 11111 1111111
lowQualScore : 88 777 0 5555555555 3 33 1 44 6 4444 1 1 1 222222 3 1 3 3 3 44444444444 44 3 88888 44 888888 1111111 7777 44 7777 7777 3
lowQualScore : .. ... . .......... . .. . .. . .... . . . ...... . . . . . ........... .. . ..... .. ...... ....... .... .. .... .... .
lowQualScore : 55 555 8 0000000000 0 88 0 22 7 2222 0 7 0 888888 6 6 3 3 3 88888888888 22 1 99999 22 888888 9999999 1111 66 1111 7777 6
consensus : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
Reference ( family-2285 ) : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
gi|1 : CCGTAAGATAT-AATATAT----TTTTACATGATTATTGATTAGAGTAAAATTAA------ATTAAAACTT-ACTTTTGTTTCCAGT-AA-GCA-ACCCT-----G-----AAATA--GC-AAA-ACG-GAGA--GTC------ACGT------TGTGAGC----A--TGCTT----TCGCAGATCT----AATGCCCGTG
gi|10 : CTCTGATAT---TGGTT----TACGTGTATTTAGGAGGC-GAAGTCCGTAAGTTAC-AATAAAT----TGTTACTTGACTGGTGATTAGCGTGAAATTAATTTATTTTAAAAACCT-ACTTTTGTTTTCAAT-Attgttttcctttatctttttaattgacaattttaagataatatgagataaatctactgtttatggatatttgaatttgatcttacagaagaaatgatattttataattgttcataaat
gi|11 : TTAATTCATCAGTTATTATCGTGAACTTAA------TTAAAAGTCT-ACTTTTCTTTTTGAT-AA-AT---------------------TA--GC-ATA-A----AGA--GTA------AAGTTCTTGCAGTAAAC----A--CACTT----TGATGAATTG----AA-GCCAGTACGgggtc
gi|13 : AAATGT-ACTTTCGTTTTCGAC-AA-ACG-GCTTTC----G-----AAATA--GC-AAA-AAT-GAGT--GTA------AAAT------GGTGGAC----A--CGCTT----TTGTGGATCT----AC-GCa
gi|14 : AAAACTT-A-TTTCGTTTTCTAT-AA-A-T-AACCT-----G-----AAATA--GC-AAA-AAATGAGA--GGA------AGGG------GGTGGAC----A--CACTT----TGGCGGATCT----AA-CCTAATGCtgatttttt
gi|16 : t-ACT-GTCCA-----G-----AAATA--GC-----------GA--AT----------C------TGTGGAC----A--CGCCT----TGGCGAATCT----AA-
gi|17 : atctATTATCATGAAATTAT------TCAAAAATCT-A-TTTCGTTTTCTAA-AG-ACT-ACCCT-----G-----AAAT------AAA-A---GAAA--TTA------AAGtacttcattgctatatggaaccatcatattga
gi|3 : TTTTGTTTTTG-T-AA-GCT-ACTCA-----G-----AAATA--GCGAAA-A---GAGA--GTACATGTAAATT------GGTGGAC----C--CGCTT----TGGTGGATCT----AA-ACCAGTGa
gi|4 : GTGC--CTTTGTCAT---TGTTTACCATACATGTATAT--GACAG-GAAGTCCGTAAGCTATTAATTGAA----TATTACTTGATTAATGCTTAATGCGAAATCAA------TAAAAAACCT-ACTTCTGTATTTAAT-AA-ACT-ACCCT-----GACATAAAATA--AC-AAC-A---AAGA--GTA------AAGG------GGTGGAC----A--CGCTT----TGATGGACCA----AA-GCCAGTGTGgtatggaaacatcatattgaaacaagatatattatatgtacggctaacgcatgcttgtcgtaatttcccgcgcttgcgcgggtgttctatcctatatatgttgtatgggagatgttgatacatgtatttgtgt
gi|5 : actaactgcttGTGCATTTTTGATAT---TGTTT----TA------TTT--GAGGT-GAAGTCCGCGAGCTAT-AATTGGA----TATAAACAGATTAGTTGTTCTCGCGAAATTAC------TTTAAAATCT-ACTTTTCTTAATGAT-AT-ACT-ACCCC-----A-----AAATA--GC-AAATA---GATATCATG------GATT------TGTGGAC----A--AACTT----TGACGGATCT----AA-
gi|6 : actctgacCTCTGACACGCATGCTT-------GCATCTTT--GATGTTGAAGTCCGAAAGCTAT-GATTGAAATTTTTTTACTTCATTAATAATTAACGTAATATTGC------TTAAAAATCTAACTTTCCTATTTTAT-AACACTAACCATAGCAGA-----AAATAATGA-AAATA---GAGA--GTT------AATT------CGTGGAC----A--CGCTT----TGGTGGagtaa
gi|7 : AATA--CC-AAA-AAT-GAGC--GTA------AAGT------GGTGGAC----AACTGCTT----TGGCGGATCT----AA-TCCAAT
gi|8 : gATTATTGTGAGGTTCA------TTAAAAGCCT-ACTTTCGTTTTCGAT-AC-ACT-ACTCT-----G-----AAATA--AC-AAA-A---GGGA--GCA------AAGA------ATTAAAC----A--CATTG----TGACAGCTTTCTTAAA-GCCAATGCttttcttattgacgtaaaatgatacgacatgtaaatccgttgtttatcaatgctacagaagaaataaatgttgataattatttaataaataaaaaaatgcctgttcatttctt
gi|9 : atatgaT-AATTGAA----TTTTATTTGATGAGTAATTATTGTTAAATGAA------TTAAAAGCAT-ACTTTCGTTTTCAACAAA-ACT-ACCTT-----G-----AAAT---------------AGA--GTA------AAGT------AGTGGACACGTA--CGCTCAAGATTGCGGATCT----AA-GACAGTGCGaattctttttttttttttttatttaaatttt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ACTTCTTGACGTGGCAATTTTTGAATTGTTTTAATTGTGATGGTGAAAGTCTTACGAGCTTTAGTAATTGAGGAGTATAAAAACAGATGGAGTTCTCGCGAAAAAATTTACGTACACAAAAGTCGTTACTTTTCTTGAGAGAATGACTATTAGTGACCACCAAATAGAATAGTCGACAATAGATATCATGGATTTGGTGGACAAACATTTGAACGGATTCTAAGATA
Unaligned ( gi|12 ): CGATATAACATCTTTGTATATTGTGATCTCCCATGCTTGCGCATGTTCAAACAGTATCTGTGTGTGAGAGTATGCATGTGCGCGTGTATGTGTG
Unaligned ( gi|15 ): GACCCGTTGCTTATCGATGTACAGAAGAAATGTTTTAAATTAGCAGTTATTGAATAAATAAGATACTAGATGCCTTTTAGTTTCTTT
Alignments
lowQualScore : 11 111 3333333333 11 11 1111 111111 11111111111 11111 1111111
lowQualScore : 88 777 0 5555555555 3 33 1 44 6 4444 1 1 1 222222 3 1 3 3 3 44444444444 44 3 88888 44 888888 1111111 7777 44 7777 7777 3
lowQualScore : .. ... . .......... . .. . .. . .... . . . ...... . . . . . ........... .. . ..... .. ...... ....... .... .. .... .... .
lowQualScore : 55 555 8 0000000000 0 88 0 22 7 2222 0 7 0 888888 6 6 3 3 3 88888888888 22 1 99999 22 888888 9999999 1111 66 1111 7777 6
consensus : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
Reference ( family-2285 ) : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
gi|1 : CCGTAAGATAT-AATATAT----TTTTACATGATTATTGATTAGAGTAAAATTAA------ATTAAAACTT-ACTTTTGTTTCCAGT-AA-GCA-ACCCT-----G-----AAATA--GC-AAA-ACG-GAGA--GTC------ACGT------TGTGAGC----A--TGCTT----TCGCAGATCT----AATGCCCGTG
gi|10 : CTCTGATAT---TGGTT----TACGTGTATTTAGGAGGC-GAAGTCCGTAAGTTAC-AATAAAT----TGTTACTTGACTGGTGATTAGCGTGAAATTAATTTATTTTAAAAACCT-ACTTTTGTTTTCAAT-Attgttttcctttatctttttaattgacaattttaagataatatgagataaatctactgtttatggatatttgaatttgatcttacagaagaaatgatattttataattgttcataaat
gi|11 : TTAATTCATCAGTTATTATCGTGAACTTAA------TTAAAAGTCT-ACTTTTCTTTTTGAT-AA-AT---------------------TA--GC-ATA-A----AGA--GTA------AAGTTCTTGCAGTAAAC----A--CACTT----TGATGAATTG----AA-GCCAGTACGgggtc
gi|13 : AAATGT-ACTTTCGTTTTCGAC-AA-ACG-GCTTTC----G-----AAATA--GC-AAA-AAT-GAGT--GTA------AAAT------GGTGGAC----A--CGCTT----TTGTGGATCT----AC-GCa
gi|14 : AAAACTT-A-TTTCGTTTTCTAT-AA-A-T-AACCT-----G-----AAATA--GC-AAA-AAATGAGA--GGA------AGGG------GGTGGAC----A--CACTT----TGGCGGATCT----AA-CCTAATGCtgatttttt
gi|16 : t-ACT-GTCCA-----G-----AAATA--GC-----------GA--AT----------C------TGTGGAC----A--CGCCT----TGGCGAATCT----AA-
gi|17 : atctATTATCATGAAATTAT------TCAAAAATCT-A-TTTCGTTTTCTAA-AG-ACT-ACCCT-----G-----AAAT------AAA-A---GAAA--TTA------AAGtacttcattgctatatggaaccatcatattga
gi|3 : TTTTGTTTTTG-T-AA-GCT-ACTCA-----G-----AAATA--GCGAAA-A---GAGA--GTACATGTAAATT------GGTGGAC----C--CGCTT----TGGTGGATCT----AA-ACCAGTGa
gi|4 : GTGC--CTTTGTCAT---TGTTTACCATACATGTATAT--GACAG-GAAGTCCGTAAGCTATTAATTGAA----TATTACTTGATTAATGCTTAATGCGAAATCAA------TAAAAAACCT-ACTTCTGTATTTAAT-AA-ACT-ACCCT-----GACATAAAATA--AC-AAC-A---AAGA--GTA------AAGG------GGTGGAC----A--CGCTT----TGATGGACCA----AA-GCCAGTGTGgtatggaaacatcatattgaaacaagatatattatatgtacggctaacgcatgcttgtcgtaatttcccgcgcttgcgcgggtgttctatcctatatatgttgtatgggagatgttgatacatgtatttgtgt
gi|5 : actaactgcttGTGCATTTTTGATAT---TGTTT----TA------TTT--GAGGT-GAAGTCCGCGAGCTAT-AATTGGA----TATAAACAGATTAGTTGTTCTCGCGAAATTAC------TTTAAAATCT-ACTTTTCTTAATGAT-AT-ACT-ACCCC-----A-----AAATA--GC-AAATA---GATATCATG------GATT------TGTGGAC----A--AACTT----TGACGGATCT----AA-
gi|6 : actctgacCTCTGACACGCATGCTT-------GCATCTTT--GATGTTGAAGTCCGAAAGCTAT-GATTGAAATTTTTTTACTTCATTAATAATTAACGTAATATTGC------TTAAAAATCTAACTTTCCTATTTTAT-AACACTAACCATAGCAGA-----AAATAATGA-AAATA---GAGA--GTT------AATT------CGTGGAC----A--CGCTT----TGGTGGagtaa
gi|7 : AATA--CC-AAA-AAT-GAGC--GTA------AAGT------GGTGGAC----AACTGCTT----TGGCGGATCT----AA-TCCAAT
gi|8 : gATTATTGTGAGGTTCA------TTAAAAGCCT-ACTTTCGTTTTCGAT-AC-ACT-ACTCT-----G-----AAATA--AC-AAA-A---GGGA--GCA------AAGA------ATTAAAC----A--CATTG----TGACAGCTTTCTTAAA-GCCAATGCttttcttattgacgtaaaatgatacgacatgtaaatccgttgtttatcaatgctacagaagaaataaatgttgataattatttaataaataaaaaaatgcctgttcatttctt
gi|9 : atatgaT-AATTGAA----TTTTATTTGATGAGTAATTATTGTTAAATGAA------TTAAAAGCAT-ACTTTCGTTTTCAACAAA-ACT-ACCTT-----G-----AAAT---------------AGA--GTA------AAGT------AGTGGACACGTA--CGCTCAAGATTGCGGATCT----AA-GACAGTGCGaattctttttttttttttttatttaaatttt
blockSeqs : AT GCA ACCATACATG A . C TT T ATTT G G G TTTATT A A A C A GACATA AT G AAAT TC CATGTA TCTTGCA ACGT AC AAGA CTTA .
blockSeqs : . GCA C . G G . . A T T . . G . . . AGCAGA . . AAT . . G . . . . .
blockSeqs : . TA . . T T . . A G T . . G . . . CG . . AAT . . G . . . . .
blockSeqs : . . T T A . . T . . . G . . TA . . T . . . . .
blockSeqs : . . T A T . . T . . . G . . TA . . G . . . . .
blockSeqs : A A . . G . . . G . . A . . G . . . . .
blockSeqs : T . . A . . . G . . A . . T . . . . .
blockSeqs : T . . G . . . A . . A . . C . . . . .
blockSeqs : . T . . . G . . A . . G . . . . .
blockSeqs : . G . . . G . . A . . A . . . . .
blockSeqs : A . . . . . . . . . A . . .
blockSeqs : . . . . .
blockSeqCons : A****
originalCons : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
finalCons : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAAA----GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ACTTCTTGACGTGGCAATTTTTGAATTGTTTTAATTGTGATGGTGAAAGTCTTACGAGCTTTAGTAATTGAGGAGTATAAAAACAGATGGAGTTCTCGCGAAAAAATTTACGTACACAAAAGTCGTTACTTTTCTTGAGAGAATGACTATTAGTGACCACCAAATAGAATAGTCGACAATAGATATCATGGATTTGGTGGACAAACATTTGAACGGATTCTAAGATA
Unaligned ( gi|12 ): CGATATAACATCTTTGTATATTGTGATCTCCCATGCTTGCGCATGTTCAAACAGTATCTGTGTGTGAGAGTATGCATGTGCGCGTGTATGTGTG
Unaligned ( gi|15 ): GACCCGTTGCTTATCGATGTACAGAAGAAATGTTTTAAATTAGCAGTTATTGAATAAATAAGATACTAGATGCCTTTTAGTTTCTTT
Alignments
lowQualScore : 11 111 3333333333 11 11 1111 111111 11111111111 11111 1111111
lowQualScore : 88 777 0 5555555555 3 33 1 44 6 4444 1 1 1 222222 3 1 3 3 3 44444444444 44 3 88888 44 888888 1111111 7777 44 7777 7777 3
lowQualScore : .. ... . .......... . .. . .. . .... . . . ...... . . . . . ........... .. . ..... .. ...... ....... .... .. .... .... .
lowQualScore : 55 555 8 0000000000 0 88 0 22 7 2222 0 7 0 888888 6 6 3 3 3 88888888888 22 1 99999 22 888888 9999999 1111 66 1111 7777 6
consensus : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
Reference ( family-2285 ) : NNNNNNNNNNNGTGCATCTCTGACAT---TGTTT----TACGCGTATTT--GANGC-GAAGTCCGTAAGCTAT-AATTGAA----TNTTACTTGATTAGTGATTANCGTGAAATTAA------TTAAAAACCT-ACTTTCGTTTTCGAT-AA-ACT-ACCCT-----G-----AAATA--GC-AAA-A---GAGA--GTA------AAGT------GGTGGAC----A--CGCTT----TGGCGGATCT----AA-GCCAGTGCG
gi|1 : CCGTAAGATAT-AATATAT----TTTTACATGATTATTGATTAGAGTAAAATTAA------ATTAAAACTT-ACTTTTGTTTCCAGT-AA-GCA-ACCCT-----G-----AAATA--GC-AAA-ACG-GAGA--GTC------ACGT------TGTGAGC----A--TGCTT----TCGCAGATCT----AATGCCCGTG
gi|10 : CTCTGATAT---TGGTT----TACGTGTATTTAGGAGGC-GAAGTCCGTAAGTTAC-AATAAAT----TGTTACTTGACTGGTGATTAGCGTGAAATTAATTTATTTTAAAAACCT-ACTTTTGTTTTCAAT-Attgttttcctttatctttttaattgacaattttaagataatatgagataaatctactgtttatggatatttgaatttgatcttacagaagaaatgatattttataattgttcataaat
gi|11 : TTAATTCATCAGTTATTATCGTGAACTTAA------TTAAAAGTCT-ACTTTTCTTTTTGAT-AA-AT---------------------TA--GC-ATA-A----AGA--GTA------AAGTTCTTGCAGTAAAC----A--CACTT----TGATGAATTG----AA-GCCAGTACGgggtc
gi|13 : AAATGT-ACTTTCGTTTTCGAC-AA-ACG-GCTTTC----G-----AAATA--GC-AAA-AAT-GAGT--GTA------AAAT------GGTGGAC----A--CGCTT----TTGTGGATCT----AC-GCa
gi|14 : AAAACTT-A-TTTCGTTTTCTAT-AA-A-T-AACCT-----G-----AAATA--GC-AAA-AAATGAGA--GGA------AGGG------GGTGGAC----A--CACTT----TGGCGGATCT----AA-CCTAATGCtgatttttt
gi|16 : t-ACT-GTCCA-----G-----AAATA--GC-----------GA--AT----------C------TGTGGAC----A--CGCCT----TGGCGAATCT----AA-
gi|17 : atctATTATCATGAAATTAT------TCAAAAATCT-A-TTTCGTTTTCTAA-AG-ACT-ACCCT-----G-----AAAT------AAA-A---GAAA--TTA------AAGtacttcattgctatatggaaccatcatattga
gi|3 : TTTTGTTTTTG-T-AA-GCT-ACTCA-----G-----AAATA--GCGAAA-A---GAGA--GTACATGTAAATT------GGTGGAC----C--CGCTT----TGGTGGATCT----AA-ACCAGTGa
gi|4 : GTGC--CTTTGTCAT---TGTTTACCATACATGTATAT--GACAG-GAAGTCCGTAAGCTATTAATTGAA----TATTACTTGATTAATGCTTAATGCGAAATCAA------TAAAAAACCT-ACTTCTGTATTTAAT-AA-ACT-ACCCT-----GACATAAAATA--AC-AAC-A---AAGA--GTA------AAGG------GGTGGAC----A--CGCTT----TGATGGACCA----AA-GCCAGTGTGgtatggaaacatcatattgaaacaagatatattatatgtacggctaacgcatgcttgtcgtaatttcccgcgcttgcgcgggtgttctatcctatatatgttgtatgggagatgttgatacatgtatttgtgt
gi|5 : actaactgcttGTGCATTTTTGATAT---TGTTT----TA------TTT--GAGGT-GAAGTCCGCGAGCTAT-AATTGGA----TATAAACAGATTAGTTGTTCTCGCGAAATTAC------TTTAAAATCT-ACTTTTCTTAATGAT-AT-ACT-ACCCC-----A-----AAATA--GC-AAATA---GATATCATG------GATT------TGTGGAC----A--AACTT----TGACGGATCT----AA-
gi|6 : actctgacCTCTGACACGCATGCTT-------GCATCTTT--GATGTTGAAGTCCGAAAGCTAT-GATTGAAATTTTTTTACTTCATTAATAATTAACGTAATATTGC------TTAAAAATCTAACTTTCCTATTTTAT-AACACTAACCATAGCAGA-----AAATAATGA-AAATA---GAGA--GTT------AATT------CGTGGAC----A--CGCTT----TGGTGGagtaa
gi|7 : AATA--CC-AAA-AAT-GAGC--GTA------AAGT------GGTGGAC----AACTGCTT----TGGCGGATCT----AA-TCCAAT
gi|8 : gATTATTGTGAGGTTCA------TTAAAAGCCT-ACTTTCGTTTTCGAT-AC-ACT-ACTCT-----G-----AAATA--AC-AAA-A---GGGA--GCA------AAGA------ATTAAAC----A--CATTG----TGACAGCTTTCTTAAA-GCCAATGCttttcttattgacgtaaaatgatacgacatgtaaatccgttgtttatcaatgctacagaagaaataaatgttgataattatttaataaataaaaaaatgcctgttcatttctt
gi|9 : atatgaT-AATTGAA----TTTTATTTGATGAGTAATTATTGTTAAATGAA------TTAAAAGCAT-ACTTTCGTTTTCAACAAA-ACT-ACCTT-----G-----AAAT---------------AGA--GTA------AAGT------AGTGGACACGTA--CGCTCAAGATTGCGGATCT----AA-GACAGTGCGaattctttttttttttttttatttaaatttt
3 sequences could not be aligned to this reference sequence:
Unaligned ( gi|2 ): ACTTCTTGACGTGGCAATTTTTGAATTGTTTTAATTGTGATGGTGAAAGTCTTACGAGCTTTAGTAATTGAGGAGTATAAAAACAGATGGAGTTCTCGCGAAAAAATTTACGTACACAAAAGTCGTTACTTTTCTTGAGAGAATGACTATTAGTGACCACCAAATAGAATAGTCGACAATAGATATCATGGATTTGGTGGACAAACATTTGAACGGATTCTAAGATA
Unaligned ( gi|12 ): CGATATAACATCTTTGTATATTGTGATCTCCCATGCTTGCGCATGTTCAAACAGTATCTGTGTGTGAGAGTATGCATGTGCGCGTGTATGTGTG
Unaligned ( gi|15 ): GACCCGTTGCTTATCGATGTACAGAAGAAATGTTTTAAATTAGCAGTTATTGAATAAATAAGATACTAGATGCCTTTTAGTTTCTTT