lowQualScore : 1111111111111 111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222
lowQualScore : 22222 8888888888888888888888888 11 11 2 22222 1 222 111 11 222222222 22 3333333333333 6666666666666 1 1 111 222222222222222 1 111111 2 1111111 55555555 1111 11111 444444444444444 11 11111111111111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 1111111 1111 111 11111 1111 111 111 1 111 666666666666666666666 11 1 11 1 111 2222
lowQualScore : 8 22222 6 6666666666666666666666666 22 0 5 6 44 3 5 99 99999 7 666 5 5 8 4 4 4 4 111 4 66 4 4 777 4 4 2 00 444444444 44 6 0000000000000 5 0000000000000 3 2 5 1 333 111111111111111 888 2 888 000000 5 6 6 5 66 6666666 66 0 5 66 6 5 5 99999999 5555 4 9 8 88888 55 999999999999999 3 4 00 4 8 777 4 5 888 77777777777777777 5 66 1 4 66 7 4 66666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 3333333 1111 555 1 44444 2222 77 333 6 111 5 6 5 6 888 222222222222222222222 6 11 5 1 5 7 5 77 1 1 6 66 444 0000 0
lowQualScore : . ..... . ......................... .. . . . .. . . .. ..... . ... . . . . . . . ... . .. . . ... . . . .. ......... .. . ............. . ............. . . . . ... ............... ... . ... ...... . . . . .. ....... .. . . .. . . . ........ .... . . . ..... .. ............... . . .. . . ... . . ... ................. . .. . . .. . . .................................................................................................................................................................................................. ....... .... ... . ..... .... .. ... . ... . . . . ... ..................... . .. . . . . . .. . . . .. ... .... .
lowQualScore : 0 00000 0 2222222222222222222222222 00 8 4 0 22 0 0 00 88888 0 222 0 0 9 0 5 0 0 333 3 11 4 4 888 4 4 4 44 444444444 11 1 0000000000000 0 4444444444444 1 0 0 9 888 000000000000000 888 0 888 555555 0 4 5 0 99 2222222 99 2 0 99 2 0 0 88888888 6666 5 0 2 99999 11 888888888888888 1 0 00 0 2 888 4 0 000 66666666666666666 0 99 3 4 11 2 4 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 0000000 7777 999 7 44444 1111 99 999 7 000 7 7 7 5 333 000000000000000000000 0 77 7 1 7 1 7 33 7 7 6 99 000 9999 6
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCACCTTGGTGATAGTCAGTCTTGCTTAGGAGTTTAAACGCCATGATTTGC-NATTCTAAATCCTATATCCTAAAGACGCATGTATACTCAATATTTATTATATTGTGGGTT-CCATTT-TAC-ATGTA-T-TGTGTG-GTTTTATTT-ACAGAGN--TTTAATTACCTGA--TTG-GAG-TTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGGTAC---TNTG-ATAGTATGA-GACACCA-TA-A--------GTATACATATGTGTCAC-ATTTT---AATT---AT-T--C----T---AATTTGCTTTCAAA---CAAAA--TGC-ATT-AT-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTTTCAAA-ATAA-ACATGA---GAGATCTC----ANTGTGCACATATTGCAAA-ATA-TGGTA--T-AA-------AATAAAATAA-CGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCA--TCTG-GTA----ATG----------A--------------T------------ATT-------G-AAATCTT-AG-----C-ATAC-ATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG----CAAA-----GT----CTC-CANGTA-AT---G--------CA--CCAAAA-----TTTTT----GAAA---TTT--AAATTTGTTTC----TCCAATNTTT--TTTTTAA-TT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGT-----A------TC------TTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAA-CTG-TAAAATTTATGTTTTGTCCACT--GGAGTTACCACTTT-AA-AAAAAATA
Reference ( gi|2 ) : AAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGC-AATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-C-ATTT-TAC-ATGTA-T-TGTATG-GTTTTATTT-ACAGAGT--TTTAATTACTTGA--TTG-GAA-TTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGGTAC---TTTT-ATAAAATGA-GACACCAATATATTAAATATGTATACATATTTGTCAC-ATGTT---AATA---AT-T--C----T---AATTTTCTTTCAAA---CAAAA--TGC-ATT-ATGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTTTCAAA-ATAA-ACAT-----T--ATCTC----ATTGTGCAAATGTTGTAAATATA-TGGTAAGTGAAATCCCGGAGTGAAATAA-CGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCA--TATG-GTA----A------------A--------------T------------ATT-------G-AAATATT-GG-----T-ATAC-ATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATG-CTTTCTTCCAAGG---CAAA-----GT----CTC-CAAGTA-A----G--------CA--ACATAA-----TTCTT----GAAA---TTT--AAATTTGTTTC----TCCAATTTTT--TTTTTAA-TT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGC-----G------TC------TTCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAA-CTT-TAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAAAAATA
gi|3 : AAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGC-AATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCC-ATTT-TAC-ATGTA-T-TGTGTG-GTTTTATTT-ACAGAGT--TTTAATTACCTGA--TTG-GAA-TTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGGTAC---TTTG-ATAGAATGA-GACACCA-------------GTATACATATGTGTCAC-ATGTTTAAAATA---AT-T--C----T---AATTTGCTTTCAAA---CAAAA--TGC-ATT-AT-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTTTCAAA-ATAA-ACAT-----G--ATCTC----TCTGTGCAAATGTTGTAA--ATA-TGGTAAGTGAAATCCCGGAGTGAAATAG-CGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCA--TCTG-GTA----T------------ATCATGCTCATGTTTT------------ATT-------G-ATATATT-GG-----T-ATA
gi|1 : ttttaaaattcacacctttcgtaatgagctttaattAAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGC-TACTCTA-A----ATATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTAC-ATTT-TAC-ATGTA-T-TGTGTG-GTTTTATTT-ACAGAGT--TTTAATTACCTGA--TTG-GAG-TTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAATTT-GAGTACCGGTAC---TGTG-ATAGTATGA-GACACCAGTATAC---ATATGTATCCACATTTGTC-C-TTTCC---AACATCGAT-T--CTATTT---AATTTT-TTTCA------AAAA--C----CT-CTACATC-GTCTT------------A--TACCA-AAATA-----------AAATATAA-A-AT-----G--ATCTC----ACTGTGCACAT-TTGCAAATTTA-TGGTA-------------AATAAAATAA-CGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT---TATG-GT-----C------------A--------------T------------ATTTTATCG-A-AAATCTTAGA-----T-A-AC-ATT----------------ACTA-TCTCCAAGG-----CAATA-ATTTCCTTCAAGG---CAAT-----GT----TGC-CATGAA-AC---T--------CA--ATATAATGTGTTTCTC----CAAATTTTTT--GAA-TTGTGTC----TTCAAATCTCCGTTATTAATTT-TCAAA-T
gi|7 : ttttaaattAAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGC-TGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTaaaaactgtaaaaaatttgttttgtccactggagttacaactttaaaaataaacattaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|23 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaattAAGAATACAGCA-CAATTTGCAACACAC
gi|5 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattAAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGC-CATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTT-CCATTT-TAC-ATGTA-T-TGTGTG-GTTTTATTT-ACAGAGT--TTTAATTACTTGA--TTG-GAA-TTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG
gi|4 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaactt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGA-AT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTT-CTATTT-TAC-ATGTA-T-TGTGTG-ATTTTATTT-ACAGAGA--TTTAATTACCTGA--TTG-GAG-TTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGGTAC---TGTG-ATAGTATGA-GACACCA-------------GTATACATATGTGTCAC-GTTTT---AATT---AT-T--G----T---AATTTGCTTTCAAA---CAAAA--TGC-ATT-AT-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTGTCAAA-ATAA-ACAT-----G--ATCTC----AATGTGCACACATTGCAA--ATA-TGGTA-------------AATAAAATAA-CGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCA--TCTG-GTA----ATGTC--------ATGCTCTTATTT---T------------ATT-------GAAAATCTT-AACATACT-GTAC-ATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAAT---------------------------GT----CCC-CAAG-------------------------AA-----TTC--------AA---TAT---AATTTGTTTC----TCCAATATTT--TTTTAAA-TT-T-AAA-TT-TGTTTCTCC-AAGAattggt
gi|6 : TGTATACTCAATATTTATTATATTGTGAGTT-CCATTT-TAC-ATGTA-T-TGAGTG-GTTTTATTT-ACAGAGT--TTTAATTACCTGA--TTG-GAG-TTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGGTAC---TGTG-ACAGTATGA-GACACCA-------------GTATACATATGTGTCAC-ATCTT---AATT---AT-T--C----TATAAATTTGCTTTCAAA---CAAAA--TGC-ATT-AT-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTTTCAAA-ATAA-GCAT-----G--ATCTC----ATTGTGCACATATTGCAA--ATA-TGGTA-------------AATAAAATAA-CAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTA--CCTG-GTA----ATGTC--------A--------------TGCTCTTATTTC-ATT-------GAAAATCTT-AG-----C-ATAC-A----------------TGACTA-TCTCCAAGG-----CAATG----TC-TCCAAG
gi|26 : TACTCAATATTTATTATATTGTCGGTT-CCATTT-TAC-ATGCA-T-TGTGTG-GTTCTATTT-ACAGAGaact
gi|11 : g-ATTTGTACGATGTAATGTGTGTG-GTCTTATTT-ACAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGGGAC---TCGTGATAGTATGA-GATACCAA------------GTATCCATATGTGTCAC-ATTTT---AATT---ATAT--T----T---AATTTGCTTTCAAAATACAAAAAATGCTATT-AATCCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-TTCAAA-ATAA-ACATGA---TAGATCTC----AATGTGCACATATTGCA---ATA-TGGTA-------------AATGAAATAA-CGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|15 : tTT-TAC-ATGTATT-TGTGTG-G-TTTATTTAACAGAGA--ATTAATATCCTGA---TG-GAG-TTTA---A--ATTA-AAAAGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGGGAC---TC--------GTGA-TATA--GATACA--------GTAT-CATATGTGTCAC-ATTTT---AATT---AT-T--CG---T---AATTTGCTTTCAAA---CAAAA--T-C-ATT-AT-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTTTTCAA-ATAA-ACATGA---TAGATCGCA---ATCGTGCACATATT-CAGATA-----ATAGGTAAA---------TAAAATAA-CGC-TG-TTGAATTTC
gi|10 : A-T-T-TATGTGTTTTATGT-ACAGAAGAATTAAATTACCTGAATTTATGAG-TTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG--T------TACCGGGACGTGCTGT-ATAGTATGATGATACCA-------------GTATACATATGTGTCACAATTTTA--AATT---AT-TTGC----T---AATTTGC-TTCAAA---CAAAA--CA--ATTAATTCA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-TTCAAA-ATAATACATGAAAGG--ATCTCATATATCGT-CAAATA-TGCAAAAATATTGGTAAATTAACT----------ATTAA-CGCGGG-TTGAGAGTTTCGC---AATATTGAAG-gc
gi|14 : c-TGTGGG-GTTTTATTT-ACAGAGA--ATTAATTACCTGA--TTG-AGA-TGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA------C--AATTT-GAGTACCGG-AC---TGTG-ATAGTATGA-G-------TATACCA-----GTATACATATGTGTCAC-ATTTT---AATT---A--T--C----T---AATTTGCTTTCAAA---CAAAA--TGC-ATT-ATTCA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTTTCAAA-ATAA-ACATGA---TAGATCTC----AATATGCACATATTGC-AATAT----GTA-------------AATAAAATAA-CGC-TG-TTGAATTT-TCGC---AATA-TGAA
gi|8 : AATAA-TGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCA--TCTG-GTA----ATGTCATGGTC--A--------------T------------ATTTTATTGAA-AAAAAAT-AG-----T-ATAC-ATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG-TTT----CCATG------AA-----------CTC-AATATA-ATTT-GTTT-----CA--CCAAGA-----TTTTTTTTAAAAA---TTT--AAATTTGTTTC----TCCA-TGATT--TTTGTAA-TT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGT-----A------TC------TTCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAA-CTG-TAAAATTT--GTTTTGTCCACT--
gi|18 : atAATAAACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCA--TATGCGTAATGCA------------A--------------TCTCTATATGTTAATT-------G-AAATCTT-AG-----C-A-AA-ATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaaaaaataaaca
gi|9 : ataatatcattagctctgtccaaactgcagatgtggaaaaaaagtattctaacctatAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCA--TTTG-GTA----ATTCAGTCTAATTA--------------T------------TTT-------G-AA-TCTT-G------C-ATAC-ATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT----TTCT--CAAGAAC-CATACATTTGT----TTCTCAAG--------------------------A-----TTTTT----GAA----TTT--AAAATTGTTGC----CCAAATTTTT--GT---AA-TTCTAAAA-TGATGCTTCTCC-AAGA-TTTTTT---AATTGT-----ACCAAGATC------TTCAAGATCTCGCGTTTT-TGATTTTC-AAA-AAAA-CTG-TAAAATTTATTTTTAGTCCATTTGGAAATTACA--CTTTAATAAATAAT
gi|12 : AATGTG-------CAT-T---ATTCTTCTT-GTA--TCTG-GTA----ATGGAATCTCT--A--------------TTTA---------ATT-------G-AAATCTT-AG-----C-ATAC-ATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG------TTCCAAG-----AA------------CTC-AATATA-AT---G--------TC--CCAAGA-----TT-TT----GAAT---TTTA-AAATTTGTTTC-----CCAA--GAT--TTTGTAA-TT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATCAGA------TC------TTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAA-CTG-TAAAATTTATGTTTTGTCCATT--GGAATTACCACTTT--A-ATAAAATAgccattaattactacagtt
gi|20 : CGT-GCAGTTACG-GTC----A------------A---------------------------------------AAACATT-CT-----TGAGACGATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATC-TCTAGAGATACGAA-----ATTCTCCTC-CAAGTG-A----G--------CATGCCAAAG-----GTTTT----GACA---TTT--GATTTTATTTCTTGTTCC--TTTTC--TTTTagcattaattactaacagttaa
gi|13 : tgattta------------ATT-------G-AAATCTT-AG-----C-CTAC-ATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG----TCTCCCAAG------AA-----------CTC--AATTATATTTTGTTTTCTCTCA--A--TAG-----TTTTT----GAAA---TTTTAAAATTTGTTTT----CCCAAGATTT--TTGT-AA-TT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGT-----A------TCAGATC-TTCA-GATCTC-CGTTTT--GATTTTC-AATAAAAA-CTG-TAAAATTTATGT-TTGTCCATT--GAAATTACCA-CTTTAA-ATAAAATA
gi|1 : ttcttgcattcaaattcttatttttaAA-TG-TGTTTCTCC-A--AATTTTTTG--AATTGT-----G------TC------TTCAA-ATCTC-CGTTAT-TAATTTTCAAATAAAAA-CTG-TAAAAAATTTGTTTTGTCCACT--GGAGTTACAACTTTAAA-AATAAACAagcatcttaattactaacaattta
gi|21 : ttttaaattaagaatacagcacaatttgcaacacactgcttctctcacgacaactcggagaatatgaagccatcaccttggtgatagtcagccttgcttaggaatttaaacgccatgatttgctactctaaatattctacataccatgcatactcaatatttattatagtgtgggttacattttacatgtattgtgtggttttatttacagagttttaattacctgattggagtttaatataatatagtggtccgtttgaacaaaacatttggaatttgagtaccggtactgtgatagtatgagacaccagtatacatatgtatccacatttgtcctttccaacatcgattctatttaatttttttcaaaaacctctacatcgtcttataccaaaataaaatataaaatgatctcactgtgcacatttgcaaatttatggtaaataaaataacgctgttgaatctctctcagtataaagcaatattaataatttacaaatgtgcatctggtaatgttatggtcatattttatcgaaaatcttagataacattactatctccaaggcaataatttccttcaaggcaatgttgccatgaaactcaatatTCC-AAGATTTTTTTTTTAAGTGT-----A------TCAGAATCTTCAAGATCTC-CGTTTTGTTATTTTC-AAT-AAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCACTTTAAA-AAATAATttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|16 : GATCTC-CGTTTT-TAATTTTC-AAT-AAAA-ATG-TCAAAT--ATGTTTTGTCCACT--GGAGTTACCATTTC----AAAAAATAcattaatactaacagttttctctctctctcctttttttttt
gi|19 : ATTGTCCACT--GGAGTTACCATTCT--A-AGAAGATAaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 1111111111111111111111111111111111111 111111111111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 22222 1111111 11111 66666666666666 11 1111111111 11 1111111 33333 22222 5555555555555555 1111111 3333333333333333333333333333333333333 111111111 11111 11111 333333333333333333333333333333333333333333333333333333 111111 11 1111 111 1111 44444444444444444444
lowQualScore : 6 3 8888888888888888888888888 66 2 1 0 9 11111 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 99 4 4 77777777777777 4 4 4 00 0000000000 777 66 66 0 4 55 4 4 4 66 4444444 66 4 66 777 4 4 99999 9999 1 4 0 22222 88888 4 9999999999999999 55 3 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 4 0000000000000000000000000000000000000 999999999 55 3 00000 4 55 3 0 0 0 4 11111 000000000000000000000000000000000000000000000000000000 5 2 000000 0 11 0 7777 3 333 5 5 4 5 8888 66666666666666666666 1 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... .. . . .............. . . . .. .......... ... .. .. . . .. . . . .. ....... .. . .. ... . . ..... .... . . . ..... ..... . ................ .. . . . . ... . . ... . . ....... . .. . . . . ..................................... ......... .. . ..... . .. . . . . . ..... ...................................................... . . ...... . .. . .... . ... . . . . .... .................... . . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 55 5 0 3 3 88888 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 99 4 4 00000000000000 4 4 4 66 2222222222 888 11 11 1 4 00 4 8 4 11 4444444 11 4 11 888 4 4 22222 4444 0 4 4 33333 66666 0 4444444444444444 00 6 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4 3333333333333333333333333333333333333 111111111 55 2 00000 0 66 6 5 7 7 0 11111 777777777777777777777777777777777777777777777777777777 0 0 999999 4 99 9 5555 4 777 7 7 0 0 3333 00000000000000000000 4 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACTG-TGATAGTATGA-G-ACACCA--------A----GTATACATATGTGT-CAC-AT-TTT--AATTAT-T--C-T---AATTTGCTTTCAAA---CA--AAA--TGC-ATTA--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A-GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGT---T-AAA--------TAA--AATAA-CGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA-AT---GTC------A-----------T------------ATT-------G-AAATCTTA--GCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAA-G---CAAA-T----CTC---CATGTAAT--G----C---C-CAA-AATTTTT----GAAATTT--AAATTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGT-----A------TC------TTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCACCTTGGTGATAGTCAGTCTTGCTTAGGAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGACGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACTN-TGATAGTATGA-G-ACACCA------TAA----GTATACATATGTGT-CAC-AT-TTT--AATTAT-T--C-T---AATTTGCTTTCAAA---CA--AAA--TGC-ATTA--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGAGA-GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA--TAAAA--------TAA--AATAA-CGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA-AT---G--------A-----------T------------ATT-------G-AAATCTTA--GCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAA-G---CAAAGT----CTC---CANGTAAT--G----CA--C-CAA-AATTTTT----GAAATTT--AAATTTGTTTCTCCAATNTTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGT-----A------TC------TTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACTG-TGATAGTATGA-G-ACACC---------A----GTATACATATGTATCCAC-AT-TT--------G-T--C-----------CTTTCCAA---CATCGAT--TCT-ATT---T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAAAATGATCTC----ACT-GTGCACAT-TTGC-AA--ATT---TA-TGGT-----AAA--------TAA--AATAA-CGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC-AT------------ATTT--------T------------ATC-------GAAAATCTTA--G-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAATT-TCCTTCAAGG---CAATGT----TGC---CATG-------------------A-AACTC--------AATAT---AATGTGTTTCTCCAA--ATTTTTTGAAT--------TG-TG--TCTTC-AA--------------------------------------------ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCTG-T-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTA-AATTAT-TTGC-T---AATTTGC-TTCAAA---CA--AAA--CA--ATTAATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGAAAGGATCTCATATATC-GT-CAAATA-TGCAAA--A-A---TATTGG----TAAAT--------TAACTATTAA-CGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCA--------A----GTATCCATATGTGT-CAC-AT-TTT--AATTATAT--T-T---AATTTGCTTTCAAAATACA--AAAAATGCTATTAA-T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT----CAAAAT-AA-ACATGATA-GATCTC----AAT-GTGCACATATTGC-----A-A---TA-TGGT-----AAA--------TGA--AATAA-CGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA-AT---GGA------A-----------TCTCTATTTA---ATT-------G-AAATCTTA--GCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG------TTCCAA-G----AA-------CTC---AATATAAT--G----TC--C-CAA-GA-TTTT----GAATTTTA-AAATTTGTTTC-CCAAGA--TTTTGTAATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATCAGA------TC------TTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATT-------G-AAATCTTA--GCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG--T--CTCCCAA-G-----AA------CTCAATTATATTTT--GTTTTCT--CTCAATAGTTTTT----GAAATTTTAAAATTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGT-----A------TCAGATC-TTCA-GATCTC-CGTTTT--GATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACTG-TGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT--AATTAT----C-T---AATTTGCTTTCAAA---CA--AAA--TGC-ATTAT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA-GATCTC----AAT-ATGCACATATTGC-----A-A---TA-T-GT-----AAA--------TAA--AATAA-CGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC----------A----GTAT-CATATGTGT-CAC-AT-TTT--AATTAT-T--CGT---AATTTGCTTTCAAA---CA--AAA--T-C-ATTA--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA-GATCGC----AATCGTGCACATATT-C-AGATA-A---TA--GGT-----AAA--------TAA--AATAA-CGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : TGCAGATGTGGA-AA--A-AAAGTA-T--TC--TAACC--------TAT--AATAAACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA-AT---GCA------A-----------TCTCTATATGTTAATT-------G-AAATCTTA--GCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaacTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACTT-TTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT--AATAAT-T--C-T---AATTTTCTTTCAAA---CA--AAA--TGC-ATTA--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT-----TATCTC----ATT-GTGCAAATGTTGT-AA--ATA---TA-TGGTAAGTGAAATCCCGGAGTGA--AATAA-CGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA-A-------------A-----------T------------ATT-------G-AAATATTG--GTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCTT-TCTTCCAAGG---CAAAGT----CTC---CAAGTAA---G----CA--A-CAT-AATTCTT----GAAATTT--AAATTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGC-----G------TC------TTCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGA-GATACGAAATTCTCCTC---CAAGTGA---G----CATGC-CAA-AGGTTTT----GACATTT--GATTTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGT-----A------TCAGAATCTTCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAAT-----------TGCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACTT-TGATAGAATGA-G-ACACC---------A----GTATACATATGTGT-CAC-ATGTTTAAAATAAT-T--C-T---AATTTGCTTTCAAA---CA--AAA--TGC-ATTA--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT-----GATCTC----TCT-GTGCAAATGTTGT--A--A-A---TA-TGGTAAGTGAAATCCCGGAGTGA--AATAG-CGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATAT---C--------A-----------T------------GCT-------C-ATGTTTTATTG-A-----T-ATATTG-GT-ATA
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACTG-TGATAGTATGA-G-ACACC---------A----GTATACATATGTGT-CAC-GT-TTT--AATTAT-T--G-T---AATTTGCTTTCAAA---CA--AAA--TGC-ATTA--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT-----GATCTC----AAT-GTGCACACATTGC--A--A-A---TA-TGGT-----AAA--------TAA--AATAA-CGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA-AT---GTC------ATGCTCTTATTTT------------ATT-------GAAAATCTTA--ACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-CC--CCAA-G--------------------------------------------AATTC--------AATAT--A-ATTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACTG-TGACAGTATGA-G-ACACC---------A----GTATACATATGTGT-CAC-AT-CTT--AATTAT-T--C-TATAAATTTGCTTTCAAA---CA--AAA--TGC-ATTA--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT-----GATCTC----ATT-GTGCACATATTGC--A--A-A---TA-TGGT-----AAA--------TAA--AATAA-CAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA-AT---GTC------A-----------TGCTCTTATTTC-ATT-------GAAAATCTTA--GCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG--T---CTCCAA-G---attggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTaact
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AATAA-TGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA-AT---GTCATGGTCA-----------T------------ATTTTATTGAA-AAAAAATA--GTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG--T-T--TCCAT-G-----AA------CTC---AATATAATTTGTTT-CA--C-CAA-GATTTTTTTTAAAAATTT--AAATTTGTTTCTCCA-TGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGT-----A------TC------TTCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA-ATTCAGTCTAATT-A-----------T------------TTT-------G-AA-TCTT---GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT---T-TCT--CAA-G-----AACC----ATA---CATTTGTT--T----C---T-CAA-GATTTTT----GAA-TTT--AAAATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGT-----ACCAAGATC------TTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 111111 33333333333333333 1111111 00000000000000000000000000000000000000000 1 11111 11111 22222222 11111111111111111111111111111111111111111111111 111111111 1111 111 1111 44444444444444
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 444444 9999 1 4 777777 99999999999999999 55 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 9999 88888888888888888888888888888888888888888 2 55 00000 4 555 4 1 0 0 4 11111 88888888 33333333333333333333333333333333333333333333333 77 0 555555555 66 5 0 0000 99 333 5 5 4 5 8888 99999999999999 1 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . ...... ................. .. . . . ... . . ... . . ....... . .. . . . .... ......................................... . .. ..... . ... . . . . . ..... ........ ............................................... .. . ......... .. . . .... .. ... . . . . .... .............. . . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 888888 4444 0 4 333333 77777777777777777 00 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4444 77777777777777777777777777777777777777777 0 55 00000 0 444 0 4 7 7 0 11111 77777777 22222222222222222222222222222222222222222222222 99 1 444444444 99 0 9 8888 55 777 7 7 0 0 3333 44444444444444 4 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AAA-ATATGG----TAAA---------TAA--AATAACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG------AA-T----C-T--C---CATGTAAT--G------C----C-CAA-GATTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGTA------TCAGA---TTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AAA-ATATGGT---TAAA---------TAA--AATAACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG---C-AAA-T----C-T--C---CATGTAAT--G------C----C-CAA-AATTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGTA------TC------TTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC-AAATTTATGG----TAAA---------TAA--AATAACGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC----AT---A-----TT-----T-----------T------------ATCGAAAATCT--TAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAATT-TCCTTCAAG---G-CAA-T----G-TTGC---CATGAAA----------C----T-CAA-TAT------------------AA-TGTGTTTCTCCAA-A-TTTTTTGAAT--------TG-TG--TCTTC-AA---------------------------------------ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAAA-ATATTGG---TAAAT--------TAACTATTAACGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC---A-ATATGG----TAAA---------TGA--AATAACGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA----AT---GGAATCTCT----A-----------TTTA---------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TC---CAAG------AA------C-T--C---AATATAAT--GT-----C----C-CAA-GATTTT-----GAATTTT--AAAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTA------TCAGATC-TTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATTG-AAATCT--TAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG--T--CTCCCAAG------AA------C-T--CAATTATATTTT--GTTTTCTC----T-CAATAGTTTTT----GAAATTTTAAAA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGTA------TCAGATC-TTCA-GATCTC-CGTTTT--GATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC---A-ATATG-----TAAA---------TAA--AATAACGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C-AGA-TAATAGG---TAAA---------TAA--AATAACGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : A---------TAA--TA-AACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA----AT---G-----CA-----A-----------TCTCTATATGTTAATTG-AAATCT--TAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaactgcagatgtggaaaaaaagtattctaacctTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTTC-ATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATTA------TCTC----ATT-GTGCAAATGTTGT-AAATATATGGTAAGTGAAATCCCGGAGTGA--AATAACGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA----A-----------------A-----------T------------ATTG-AAATAT--TGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCTT-TCTTCCAAGG--C-AAAGT----C-T--C---CAAGTAA---G------C----AACAT-AATTCTT----GAAATTT--AAA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGCG------TC------TTCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAAA-TTCTCC-T--C---CAAGTGA---G------CATG-C-CAA-AGGTTTT----GACATTT--GAT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGTA------TCAGAATCTTCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT-AAA--TATGGTAAGTGAAATCCCGGAGTGA--AATAGCGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATATCAT---GC----TC-----ATGTTT------T------------ATTG-ATATAT--TGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--AA-ATATGG----TAAA---------TAA--AATAACGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----ATGCTCTTATTTT------------ATTGAAAATCT--TAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-CC--CCAAG------AA-T------T--C---AATAT--------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--AA-ATATGG----TAAA---------TAA--AATAACAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA----AT---G-----TC-----A-----------TGCTCTTATTTC-ATTGAAAATCT--TAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG--T---CTCCAAG---attggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTaact
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AATAATGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------TGGTCATATTTT-ATTG-AAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG--T-T--TCCATG------AA------C-T--C---AATATAATTTG------TTTCAC-CAA-GATTTTTTTTAAAAATTT--AAA-TTTGTTTCTCCA-TGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGTA------TC------TTCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA----ATTCAG-----TCTAATTA-----------T------------TTTG-AA-TCT--T-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT---T-TCT--CAAG------AA-C----CAT--A---CATTTGTT--T------C----T-CAA-GATTTTT----GAA-TTT--AAA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGTACCAAGATC------TTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 22222222222 2222222222222 2222222222222 1111111 00000000000000000000000000000000000000000 1 11111 11111 22222222 9999999999999999999999999999999999999999999999999999999999999 1111111 1111 111 111 1111 4444444444
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 777777 9999 1 4 0 11111111111 4 2222222222222 777 4 55 0000000000000 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 9999 88888888888888888888888888888888888888888 2 55 00000 4 555 4 1 0 0 4 11111 88888888 1111111111111111111111111111111111111111111111111111111111111 3 3333333 5 0 0000 99 333 5 5 4 5 000 5 4444 0000000000 5 0 5 2 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . . ........... . ............. ... . .. ............. . . . ... . . ... . . ....... . .. . . . .... ......................................... . .. ..... . ... . . . . . ..... ........ ............................................................. . ....... . . .... .. ... . . . . ... . .... .......... . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 444444 4444 0 4 4 99999999999 0 0000000000000 000 0 00 0000000000000 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4444 77777777777777777777777777777777777777777 0 55 00000 0 444 0 4 7 7 0 11111 77777777 2222222222222222222222222222222222222222222222222222222222222 4 4444444 0 9 8888 55 777 7 7 0 0 000 7 9999 7777777777 0 1 0 2 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG------AAT----C-TC---NATGTA---AT--G------C----CCAAGA-TTTTT----GAAATTT--A----AA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTT---TT-TT---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTCAATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG------AAT----C-TC---CATGTA---AT--G------C----CCAAGA-TTTTT----GAAATTT--A----AA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTT---TT-TT---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTCAATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC-AA--ATT---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC----AT---A-----TT-----T-----------T------------ATCGAAAATCT--TAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAATT-TCCTTCAAG------G---------C---AATGT-----T--G-----------CCA--------T----GAAACTC--AATATAA-TGTGTTTCTCCAA-A-TTTTTTGAAT--------TG-TG--TCTTC-AA-ATCTCCGTTATT---AATT------------T--TCA-----------------------AATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAA--A-A---TATTGGTA-------------A---ATTAACTATT-------------AACGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC-----A-A---TA-TGGTA-------------A---A-TGA--AAT-------------AACGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA----AT---GGAATCTCT----A-----------TTTA---------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TC---CAAG------AA-----C-TC---AATATA---AT--GT-----C----CCAAGA-TTTT-----GAATTTT--A----AAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTT---TT-TG---AATTGTATCA-GA---TCTTCAAGATTTC-CGTTTT-TGATTTTCAATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATTG-AAATCT--TAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG--T--CTCCCAAG------AA-----C-TCAATTATATT---TT--GTTTTCTC----TCAATAGTTTTT----GAAATTTTAA----AA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTT---TT-TG---AATTGTATCA-GATC-T--TC-AGATCTC-CG-TTT-TGATTTTCAATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC-----A-A---TA-T-GTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C-AGATA-A---TA--GGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTCAATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : TGCAGATGTGGA-AA--A-AAAGTA-TTCTA-------------ACCTA-TAA--TA--------------AACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA----AT---G-----CA-----A-----------TCTCTATATGTTAATTG-AAATCT--TAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaacTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT------TATCTC----ATT-GTGCAAATGTTGT-AA--ATA---TA-TGGTAAGTGAAATCCCGGA---G-TGA--AAT-------------AACGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA----A-----------------A-----------T------------ATTG-AAATAT--TGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCTT-TCTTCCAAGGCAA--AGT----C-TC---CAAGTA---A---G------CA---ACATAA-TTCTT----GAAATTT--A----AA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATT---TT-TT---AATTGCGTC-------T--TCAAGATCCC-TGTTTT-TAATTTTCAAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAAATTCTCC-TC---CAAGTGAGCAT--G------C----CAAAGG--TTTT----GACATTT--G----AT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTT---TT-TTTTTAAGTGTATCA-GAATCT--TCAAGATCTC-CGTTTTGTTATTTTCAATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT-AA--A-----TA-TGGTA-------------A---G-TGA--AATCCCGGAGTGAAATAGCGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATATCAT---GC----TC-----ATGTTT------T------------ATTG-ATATAT--TGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----ATGCTCTTATTTT------------ATTGAAAATCT--TAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-CC--CCAAG------AAT------TC---AATAT--------------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA----AT---G-----TC-----A-----------TGCTCTTATTTC-ATTGAAAATCT--TAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG--T---CTCCAAG------AAattggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTct
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AAT-------------AATGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------TGGTCATATTTT-ATTG-AAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG--T-T--TCCATG------AA-----C-TC---AATATA---ATTTG------TTTCACCAAGA-TTTTTTTTAAAAATTT--A----AA-TTTGTTTCTCCA-TGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTT---TG-TT---AATTGTATC-------T--TCAAGATCTC-CGTTTT-TAATTTTTCAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA----ATTCAG-----TCTAATTA-----------T------------TTTG-AA-TCT--T-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT---T-TCT--CAAG------AAC----CATA---CATTTG---TT--T------C----TCAAGA-TTTTT----GAA-TTT--A----AA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTT---TT-T----AATTGTACCAAGA---TCTTCAAGATCTCGCGTTTT-TGATTTTCAA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 22222222222 2222222222222 2222222222222 1111111 00000000000000000000000000000000000000000 1 11111 11111 22222222 99999999999999999999999999999999999999999999999999999999999 11 111 1111 4444444444
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 777777 9999 1 4 0 11111111111 4 2222222222222 777 4 55 0000000000000 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 9999 88888888888888888888888888888888888888888 2 55 00000 4 555 4 1 0 0 4 11111 88888888 00000000000000000000000000000000000000000000000000000000000 3 777 5 3 0 4 0 22 333 5 5 5 8888 4444444444 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . . ........... . ............. ... . .. ............. . . . ... . . ... . . ....... . .. . . . .... ......................................... . .. ..... . ... . . . . . ..... ........ ........................................................... . ... . . . . . .. ... . . . .... .......... . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 444444 4444 0 4 4 99999999999 0 0000000000000 000 0 00 0000000000000 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4444 77777777777777777777777777777777777777777 0 55 00000 0 444 0 4 7 7 0 11111 77777777 55555555555555555555555555555555555555555555555555555555555 4 000 0 9 1 1 1 55 777 7 7 0 3333 3333333333 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG------AAT----C-TCAATGTA---AT---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TCTTCCAAG------AAT----C-TCNATGTA---AT---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTT---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC-AA--ATT---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC----AT---A-----TT-----T-----------T------------ATCGAAAATCT--TAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAATT-TCCTTCAAG------G---------CAATGT-----T---G-----------CCA--------T----GAAACT-----------------CAATAT---------------AA-TG-TGTTTCTCC-AA-ATTTTTTG---AATTGTGTC-------T--TCAA-ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAA--A-A---TATTGGTA-------------A---ATTAACTATT-------------AACGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC-----A-A---TA-TGGTA-------------A---A-TGA--AAT-------------AACGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA----AT---GGAATCTCT----A-----------TTTA---------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-TC---CAAG------AA-----C-TCAATATA---AT---GT-----C----CCAAGA-TTTT-----GAATTTT--AAAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATCA-GA---TCTTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATTG-AAATCT--TAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG--T--CTCCCAAG------AA-----C-TCAAT-TAT--ATTTTGTTTTCTC----TCAATAGTTTTT----GAAATTTTAAAA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGTATCA-GATC-T--TC-AGATCTC-CG-TTT-TGATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC-----A-A---TA-T-GTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C-AGATA-A---TA--GGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : TGCAGATGTGGA-AA--A-AAAGTA-TTCTA-------------ACCTA-TAA--TA--------------AACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA----AT---G-----CA-----A-----------TCTCTATATGTTAATTG-AAATCT--TAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaacTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT------TATCTC----ATT-GTGCAAATGTTGT-AA--ATA---TA-TGGTAAGTGAAATCCCGGA---G-TGA--AAT-------------AACGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA----A-----------------A-----------T------------ATTG-AAATAT--TGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCTT-TCTTCCAAGGCAA--AGT----C-TCCAAGTA---A----G------CA---ACATAA-TTCTT----GAAATTT--AAA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGCGTC-------T--TCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAAATTCTCC-TCCAAGTGAGCAT---G------C----CAAAGG--TTTT----GACATTT--GAT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGTATCA-GAATCT--TCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT-AA--A-----TA-TGGTA-------------A---G-TGA--AATCCCGGAGTGAAATAGCGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATATCAT---GC----TC-----ATGTTT------T------------ATTG-ATATAT--TGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----ATGCTCTTATTTT------------ATTGAAAATCT--TAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG--T-CC--CCAAG------AAT------TCAATAT-----------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA----AT---G-----TC-----A-----------TGCTCTTATTTC-ATTGAAAATCT--TAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG--T---CTCCAAG------AAattggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTct
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AAT-------------AATGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------TGGTCATATTTT-ATTG-AAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG--T-T--TCCATG------AA-----C-TCAATATA---ATTT-G------TTTCACCAAGA-TTTTTTTTAAAAATTT--AAA-TTTGTTTCTCCA-TGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGTATC-------T--TCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA----ATTCAG-----TCTAATTA-----------T------------TTTG-AA-TCT--T-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT---T-TCT--CAAG------AAC----CATACATTTG---TT---T------C----TCAAGA-TTTTT----GAA-TTT--AAA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGTACCAAGA---TCTTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 22222222222 2222222222222 2222222222222 1111111 00000000000000000000000000000000000000000 1 11111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 11 111 1111 4444444444
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 777777 9999 1 4 0 11111111111 4 2222222222222 777 4 55 0000000000000 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 9999 88888888888888888888888888888888888888888 2 55 00000 4 555 4 1 0 0 4 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 3 777 5 3 0 4 0 22 333 5 5 5 6666 4444444444 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . . ........... . ............. ... . .. ............. . . . ... . . ... . . ....... . .. . . . .... ......................................... . .. ..... . ... . . . . . ..... ............................................................................... . ... . . . . . .. ... . . . .... .......... . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 444444 4444 0 4 4 99999999999 0 0000000000000 000 0 00 0000000000000 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4444 77777777777777777777777777777777777777777 0 55 00000 0 444 0 4 7 7 0 11111 4444444444444444444444444444444444444444444444444444444444444444444444444444444 4 000 0 9 1 1 1 55 777 7 7 0 6666 3333333333 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC-AA--ATT---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC----AT---A-----TT-----T-----------T------------ATCGAAAATCT--TAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAAT---TTCC-----TTCAAG----G--------CA-ATGT-------T---G-----------CCA--------T----GAAACT-----------------CAATAT---------------AA-TG-TGTTTCTCC-AA-ATTTTTTG---AATTGTGTC-------T--TCAA-ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAA--A-A---TATTGGTA-------------A---ATTAACTATT-------------AACGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC-----A-A---TA-TGGTA-------------A---A-TGA--AAT-------------AACGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA----AT---GGAATCTCT----A-----------TTTA---------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTC--------CAAG----AA-CT----CA-ATATA---A--T---GT-----C----CCAAGA-TTTT-----GAATTTT--AAAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATCA-GA---TCTTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATTG-AAATCT--TAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG-----T-CT-----CCCAAG----AA-CT----CA-AT-TAT--A--TTTTGTTTTCTC----TCAATAGTTTTT----GAAATTTTAAAA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGTATCA-GATC-T--TC-AGATCTC-CG-TTT-TGATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC-----A-A---TA-T-GTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C-AGATA-A---TA--GGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : TGCAGATGTGGA-AA--A-AAAGTA-TTCTA-------------ACCTA-TAA--TA--------------AACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA----AT---G-----CA-----A-----------TCTCTATATGTTAATTG-AAATCT--TAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaacTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT------TATCTC----ATT-GTGCAAATGTTGT-AA--ATA---TA-TGGTAAGTGAAATCCCGGA---G-TGA--AAT-------------AACGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA----A-----------------A-----------T------------ATTG-AAATAT--TGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCT---TTCT-----TCCAAGGCAAAGTCT----CC-AAGTA---A------G------CA---ACATAA-TTCTT----GAAATTT--AAA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGCGTC-------T--TCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAA----ATTCTCCTCCA-A-GTGAGCA--T---G------C----CAAAGG--TTTT----GACATTT--GAT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGTATCA-GAATCT--TCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT-AA--A-----TA-TGGTA-------------A---G-TGA--AATCCCGGAGTGAAATAGCGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATATCAT---GC----TC-----ATGTTT------T------------ATTG-ATATAT--TGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----ATGCTCTTATTTT------------ATTGAAAATCT--TAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TCC-------CCAAG----AAT-T----CA-ATAT-------------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA----AT---G-----TC-----A-----------TGCTCTTATTTC-ATTGAAAATCT--TAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG-----T--C-----TCCAAG----AAattggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTct
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AAT-------------AATGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------TGGTCATATTTT-ATTG-AAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG-----T--T-----TCCATG----AA-CT----CA-ATATA---ATTT---G------TTTCACCAAGA-TTTTTTTTAAAAATTT--AAA-TTTGTTTCTCC-ATGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGTATC-------T--TCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA----ATTCAG-----TCTAATTA-----------T------------TTTG-AA-TCT--T-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT------TTCT-------CAAG----AACCA----TACATTTG---T--T---T------C----TCAAGA-TTTTT----GAA-TTT--AAA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGTACCAAGA---TCTTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 22222222222 2222222222222 2222222222222 1111111 00000000000000000000000000000000000000000 1 11111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 11 111 1111 4444444444
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 777777 9999 1 4 0 11111111111 4 2222222222222 777 4 55 0000000000000 3 3 6 777 4 4 555 4 3 4444444 4 66 4 0 4 9999 88888888888888888888888888888888888888888 2 55 00000 4 555 4 1 0 0 4 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 3 777 5 3 0 4 0 22 333 5 5 5 6666 4444444444 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . . ........... . ............. ... . .. ............. . . . ... . . ... . . ....... . .. . . . .... ......................................... . .. ..... . ... . . . . . ..... ............................................................................... . ... . . . . . .. ... . . . .... .......... . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 444444 4444 0 4 4 99999999999 0 0000000000000 000 0 00 0000000000000 6 6 5 000 0 4 999 5 0 4444444 4 11 4 1 4 4444 77777777777777777777777777777777777777777 0 55 00000 0 444 0 4 7 7 0 11111 4444444444444444444444444444444444444444444444444444444444444444444444444444444 4 000 0 9 1 1 1 55 777 7 7 0 6666 3333333333 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC-AA--ATT---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATGTG-------CAT-CT--G---GTAAT-GT-TATG-GTC----AT---A-----TT-----T-----------T------------ATCGAAAATCT--TAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAAT---TTCC-----TTCAAG----G--------CA-ATGT-------T---G-----------CCA--------T----GAAACT-----------------CAATAT---------------AA-TG-TGTTTCTCC-AA-ATTTTTTG---AATTGTGTC-------T--TCAA-ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAA--A-A---TATTGGTA-------------A---ATTAACTATT-------------AACGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC-----A-A---TA-TGGTA-------------A---A-TGA--AAT-------------AACGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTA----AT---GGAATCTCT----A-----------TTTA---------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTC--------CAAG----AA-CT----CA-ATATA---A--T---GT-----C----CCAAGA-TTTT-----GAATTTT--AAAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATCA-GA---TCTTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : ------------ATTG-AAATCT--TAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG-----T-CT-----CCCAAG----AA-CT----CA-AT-TAT--A--TTTTGTTTTCTC----TCAATAGTTTTT----GAAATTTTAAAA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGTATCA-GATC-T--TC-AGATCTC-CG-TTT-TGATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaattcttattttta-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC-----A-A---TA-T-GTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C-AGATA-A---TA--GGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : TGCAGATGTGGA-AA--A-AAAGTA-TTCTA-------------ACCTA-TAA--TA--------------AACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTA----AT---G-----CA-----A-----------TCTCTATATGTTAATTG-AAATCT--TAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtccaaacTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT------TATCTC----ATT-GTGCAAATGTTGT-AA--ATA---TA-TGGTAAGTGAAATCCCGGA---G-TGA--AAT-------------AACGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTA----A-----------------A-----------T------------ATTG-AAATAT--TGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCT---TTCT-----TCCAAGGCAAAGTCT----CC-AAGTA---A------G------CA---ACATAA-TTCTT----GAAATTT--AAA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGCGTC-------T--TCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAA----ATTCTCCTCCA-A-GTGAGCA--T---G------C----CAAAGG--TTTT----GACATTT--GAT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGTATCA-GAATCT--TCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT-AA--A-----TA-TGGTA-------------A---G-TGA--AATCCCGGAGTGAAATAGCGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GTATATCAT---GC----TC-----ATGTTT------T------------ATTG-ATATAT--TGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----ATGCTCTTATTTT------------ATTGAAAATCT--TAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TCC-------CCAAG----AAT-T----CA-ATAT-------------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--A--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTA----AT---G-----TC-----A-----------TGCTCTTATTTC-ATTGAAAATCT--TAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG-----T--C-----TCCAAG----AAattggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTct
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt--AAT-------------AATGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------TGGTCATATTTT-ATTG-AAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG-----T--T-----TCCATG----AA-CT----CA-ATATA---ATTT---G------TTTCACCAAGA-TTTTTTTTAAAAATTT--AAA-TTTGTTTCTCC-ATGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGTATC-------T--TCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTA----ATTCAG-----TCTAATTA-----------T------------TTTG-AA-TCT--T-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT------TTCT-------CAAG----AACCA----TACATTTG---T--T---T------C----TCAAGA-TTTTT----GAA-TTT--AAA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGTACCAAGA---TCTTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
blockSeqs : A A AGAAAACATGAAG TA T A C AGATG G G A G T A GAA AT T A TAG C C C ACACATT T CA GACGT C T T AATATATTAAATAT . A G A AA TCTATA AAT AA . T AAT G T A GG TGTGGTG AT T GG T . . T GAAAG ATAT T C AAAAAAG T AGTGAAATCCCGG CCT T CT CCCGGAGTGAAAT G A T GCA T G AG C C TTCTTTT C AC T C TATC GCAATCTCTATATGTTA A AA TACTG . TTG A T C ATAAA ACTATCTCTAGAGATACGAAATTCTCCTCCAAGTGAGCATGCCAAAGGTTTT T TTA A C A TT CTA G A C TTTT AGAATCT G G G . A T TG T T AT
blockSeqs : . A G TA T A C AGATG . . . . . . A . . . . . . . AATT T TA G C . . AA . . . . . TTGCT . . . . AA . A . . . . . . T . . . GATA . A . AGATAA . . . . . . . . T . . . A C A . . . . . . GTCATGCTCTTATTTT A . . . TG . T . . TCTCCCAAGAACTCAATTATATTTTGTTTTCTCTCAATAGTTTTT A T . T A TT TC . . . G AAGATCT . . G . A . . . . A
blockSeqs : . A A AC G T C AGATG . . . . . . A . . . . . . . AAAT T TG G . . . A . . . . . ATTT . . . . AT . T . . . . . . T . . . GATA . A . AAAAA . . . . . . . . C . . . A C A . . . . . . GTCATGCTCTTATTTC . . . . GA . T . . TTTCCATGAACTCAATATAATTTGTTTCACCAAGATTTTTTTTA A T . T T TA TC . . . G AGATCT . . A . A . . . . A
blockSeqs : . . G TA T C T . . . . . . . A . . . . . . . CATT T TA T . . . A . . . . . TCGT . . . . A . T . . . . . . T . . . GATA . A . AAATA . . . . . . . . C . . . A C A . . . . . . GTCATGGTCATATTTT . . . . TG . C . . CTTTCTTCCAAGGCAAAGTCTCCAAGTAAGCAACATAATTCTT A T . T G GT TT . . . T AGATCT . . A . A . . . . A
blockSeqs : . . AC G T . . . . . . . . T . . . . . . . AAAT T TA T . . . A . . . . . TCT . . . . A . T . . . . . . T . . . GA . T . AAA . . . . . . . . C . . . C C C . . . . . . GGAATCTCTATTTA . . . . TT . C . . TTCTCAAGAACCATACATTTGTTTCTCAAGATTTTT A T . T A GT C . . . T T . . T . A . . . . G
blockSeqs : . . . . . . T . . . . . . . CATA A T T . . . A . . . . . TCT . . . . A . T . . . . . . T . . . . . C . AAA . . . . . . . . C . . . A . . . . . . . . TCAGTCTAATTAT . . . . TA . T . . TTCCAAGAACTCAATATAATGTCCCAAGATTTT . T . C G T T . . . . T . . A . . . . . . A
blockSeqs : . . . . . . A . . . . . . . AAC T G T . . . A . . . . . TGT . . . . A . . . . . . . . . . . . . . A . AAA . . . . . . . . C . . . G . . . . . . . . GCTCATGTTTT . . . . TG . A . . TCCCCAAGAATTCAATAT . . . . . . . . . G . . . . . . T
blockSeqs : . . . . . . T . . . . . . . AC A G . . . . A . . . . . CT . . . . A . . . . . . . . . . . . . . T . AA . . . . . . . . . . . . . . . . . . AT . . . . TG . T . . .
blockSeqs : . . . . T . . . . . . . CA . G AA . . . . . . . . . . . . . . . . . . .
blockSeqs : . . . . . . . .
blockSeqCons : G************************ AGATG TCT******* ** A*** *** GAA*** AAA******** A** GTCATGCTCTTATTTT************************* TG* T** TT TC* AGATCT**** A**
originalCons : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC-AA--A-A---TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----AT---G-----TC-----A-----------T------------ATTG-AAATCT--TAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCA-GA---T--TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
finalCons : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCG------------------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTATTCT-------AATTTGCTTTCAA---AC--A--AAATGC-ATTA---T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGAA---GATCTC----ANT-GTGCACATATTGCAAA--------TA-TGGTA-------------A---A-TAA--AAT-------------AACGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTAA--ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTA----ATGTCATGCTCTTATTTT-------------------------ATTG-AAATCT--TAGCA-----T-ACATTTG-T-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATTTC-AAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATCAGATCT----TCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAAA--AATA
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC
Alignments
lowQualScore : 6666666666666666666666666 11111 1111111 11111 44444444444444 1111111111 1111 1111111 333333 222222222222222222222222 11111 2222222222222 11111111 11 11111 11111 8888888888888888888888888888888888888888888888888888888888888888888888888888888 11 111 1111 22222222
lowQualScore : 6 3 8888888888888888888888888 22 1 1 0 9 77777 0 4 4 4 3 3 3 666 55 4 4 777 4 4 0 4 1111111 3 88 00000 8 4 4 00000000000000 4 4 4 4 66 0000000000 777 66 66 0 4 1111 4 4 4 66 4444444 66 4 66 1 777 4 4 777777 9999 1 4 666 55 55 4 4 4 777777777777777777777777 44444 0000000000000 3 3 3 6 777 4 4 555 4 3 44444444 4 66 2 4 4 0 0 999 666 55 4 77 00000 4 555 4 1 0 0 4 11111 7777777777777777777777777777777777777777777777777777777777777777777777777777777 3 777 5 3 0 4 0 22 333 5 5 5 6666 44444444 5 5 1 5 3 5 00 66 5 5 666
lowQualScore : . . ......................... .. . . . . ..... . . . . . . . ... .. . . ... . . . . ....... . .. ..... . . . .............. . . . . .. .......... ... .. .. . . .... . . . .. ....... .. . .. . ... . . ...... .... . . ... .. .. . . . ........................ ..... ............. . . . . ... . . ... . . ........ . .. . . . . . ... ... .. . .. ..... . ... . . . . . ..... ............................................................................... . ... . . . . . .. ... . . . .... ........ . . . . . . .. .. . . ...
lowQualScore : 7 2 4444444444444444444444444 00 0 0 3 3 00000 7 4 4 0 6 6 6 555 55 0 0 000 0 0 4 0 8888888 5 66 33333 9 4 4 11111111111111 4 4 4 4 11 2222222222 888 11 11 1 4 4444 4 8 4 11 4444444 11 4 11 9 888 4 4 444444 4444 0 4 333 55 55 0 0 0 000000000000000000000000 11111 0000000000000 6 6 6 5 000 0 4 999 5 0 66666666 4 11 3 4 4 1 1 777 111 55 0 55 00000 0 444 0 4 7 7 0 11111 4444444444444444444444444444444444444444444444444444444444444444444444444444444 4 000 0 9 1 1 1 55 777 7 7 0 6666 99999999 0 0 1 0 2 0 55 11 0 0 111
consensus : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC--AA--A--T-A-T-GGTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTAATGTCATGCTCT-TATTTT--A-TTGA-AAATCTTAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATC-AGA-TCTTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
Reference ( family-2268 ) : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATC------------G------------TCATCNNCTTGGTGATAGTCAGCCTTGCTTAGNAGTTTAAACGCCATGATTTGCNATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGN--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAA---ATTTGGAATTTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACCAA------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA-A--GATCTC----ANT-GTGCACATATTGC--AA--A--T-A-T-GGTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATGTG-------CAT-TT--ATTCTTCAT-GCATCTG-GTAATGTCATGCTCT-TATTTT--A-TTG--AAATCTTAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTCT-----TCCAAG----AATCT----CA-ATGTA---A--T---G------C----CCAAGA-TTTTT----GAAATTT--AAA-TTTGTTTCTCCAATATTTTTTTTAATT-TCAAA-TG-TGCTTCTCC-AAGATTTTTTN---AATTGTATC-AGA-TCTTCAAGATCTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCACT--GGAGTTACCA-CTTTAA-AAA-A-AATA
gi|1 : AAGAATACAGCA-CAATTTGCAACACACTGCTTCTCTCACGACAACTC------------GGAGAATATGAAGCCATCACCTTGGTGATAGTCAGCCTTGCTTAGGAATTTAAACGCCATGATTTGCTACTCTAAAT-----ATTCTACATAC-CATGCATACTCAATATTTATTATAGTGTGGGTTACATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAACA-AAAC---ATTTGGAA-TTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTATCCAC-AT-TT---------G-T--C-----------CTTTCCA---AC--ATCGATTCT-ATT----T-AATT-TTTTT--CA-------AA--AACCT-CTACA--TCGTCTTATACCAAAATAAA-ATATAA-AATGATCTC----ACT-GTGCACAT-TTGC--AA--ATTT-A-T-GGTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATCTCTCTC---AGTA-TAAAG-CAATATTAATA-ATTTACAAATG-------------------------T-GCATCTG-GTAATGTTATGGTCA-TATTTT--A-TCGA-AAATCTTAG-A-----TAACATT----------------ACTA-TCTCCAAGG-----CAATAAT---TTCC-----TTCAAG----G--------CA-ATGT-------T---G-----------CCA--------T----GAAACT-----------------CAATAT---------------AA-TG-TGTTTCTCC-AA-ATTTTTTG---AATTGT------G-TCTTCAA-ATCTC-CGTTAT-TAATTTTCAAATAAAAACT-GTAAAAAATTTGTTTTGTCCACT--GGAGTTACAA-CTTTAA-AAATA-AACA
gi|10 : ttttaaatt-T-T-ATGTG-TTTTATGTA-CAGAAGAATTAAATTACCTGAATTTATGA-GTTTA---ACTATGACTACAGTGGACCGTTGAAACA-CAAACACATTTGG-----T---TACCGGGACGTGCT-GT-ATAGTATGATG-ATACCA-------------GTATACATATGTGT-CACAAT-TTTAAA--TTAT-TTGC-T---AATTTGC-TTCAA---AC--A--AAACA--ATT-AATT-CA-T-TTTTT--TC-------AAATAATCATTCATA--CTGTC-T---TCAAAAT-AATACATGA-AAGGATCTCATATATC-GT-CAAATA-TGCAAAA--A--T-ATT-GGTA-------------AAT--------TAACT---ATT-------------AA-CGCGGG-TTGAGAGTTTCGC---AATATTGAAG-ttaattactatcattgttattttctattttttgccagaaaatataccggctgtcaattgcaaaattcatggtaaacagttgcttcgaaatgtcagtcatttgatacgaaggaaaaggacgtcttttaaccaaaatcaacgaattcat
gi|11 : catATTTGTACGATGTAATGT-GTGTGGTCTTATTTA-CAGAGA--TT-AATT-CCTGA--TTG-GAAGTTTATAGA-TATGA-TACAGTGGTC-GTTCAGACACAAAA---AC----AATTT-GAGTACCGG----GACTCGTGATAGTATGA-G-ATACCAA------------GTATCCATATGTGT-CAC-AT-TTT-AA--TTATAT--T-T---AATTTGCTTTCAAAATACAAA--AAATGCTATTAA--T-CCTT-TTTTG--TC-------AA--AACCA-TCATA--CTGTC-T---TCAAAAT-AA-ACATGATA--GATCTC----AAT-GTGCACATATTGC---A--A--T-A-T-GGTA-------------AA---------TGA-----AAT-------------AA-CGC-TG-TTGAAATTTTCGC---AATA-TGAA
gi|12 : tAATGTG-------CAT-T---ATTCTTCTT-GTATCTG-GTAATGGAAT-CTCT--ATTTA--A-TTG--AAATCTTAGCA-----T-ACATTT-GT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TTC--------CAAG----AA-CT----CA-ATATA---A--T---GT-----C----CCAAGA-TTTT-----GAATTTT--AAAATTTGTTTC-CCAAGATTTTGT--AATT-TCAAAGTG-TGCTTCTCC-AAGATTTTTTG---AATTGTATC-AGA-TCTTCAAGATTTC-CGTTTT-TGATTTTC-AATAAAAACT-GTAAAATTTATGTTTTGTCCATT--GGAATTACCA-CTTTAA-TAA-A-
gi|13 : TCT-TATTTTTAA-TTG--AAATCTTAGCC-----T-ACATTTTGTACTAAGTGCTT--CTA-TCTCCA-GG-----CAATG-----T-CT-----CCCAAG----AA-CT----CA-AT-TAT--A--TTTTGTTTTCTC----TCAATAGTTTTT----GAAATTTTAAAA-TTTGTTTTCCCAAGATTTTTGT-AATT--CAAA-TG-TGCTTCTCCCAAGATTTTTTG---AATTGTATC-AGA-TCTTCA-GATCTC-CGTTTT--GATTTTC-AATAAAAACT-GTAAAATTTATG-TTTGTCCATT--GAAATTACCA-CTTTAA-ATA-A-AATAtaagcattaattactaacagttaa
gi|14 : ttcttgcattcaaat-T-GTGGGGTTTTATTTA-CAGAGA--ATTAATTACCTGA--TTG-AG-ATGTT---A-TATAA-TACAGTGGTCTGTTTGAACA-AAAA---C-----AATTT-GAGTACCGG-----ACT-GTGATAGTATGA-GTATACCA-------------GTATACATATGTGT-CAC-AT-TTT-AA--TTAT----C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-AT-T-CA-T-TTTTG--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGATA--GATCTC----AAT-ATGCACATATTGC---A--A--T-A-T--GTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATTT-TCGC---AATA-TGAAagcatcttaattactaacaattta
gi|15 : TT-TAC-ATGTA-T-TTGTGTGGTTT-ATTTAACAGAGA--ATTAATATCCTGA--T-G-GA-GTTTA---A-ATTAA-AA-AGTGGGTCGT---GACA-AAAC---A-----AATTT-GAGTACCGG----GACTCGTGATA---T-A-G-ATAC--A------------GTAT-CATATGTGT-CAC-AT-TTT-AA--TTAT-T--CGT---AATTTGCTTTCAA---AC--A--AAAT-C-ATT-A--T-CAAT-TTTTG--TC-------AA--AA-CA-TCATAGGCTGTCTT---TTCAAAT-AA-ACATGATA--GATCGC----AATCGTGCACATATT-C--AG--A--TAA-TAGGTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATTTC
gi|16 : GATCTC-CGTTTT-TAATTTTC-AATAAAAA-T-GTCAAAT--ATGTTTTGTCCACT--GGAGTTACCA-TTTCAA-AAA-A-gc
gi|18 : CAAACTGC--AG--A--T-G-T-GGAA-------------AAAAAGTATTCTAACCTATAAT-------------AAACGC-TG-TTGGAGATCTTTCGCAAATA-TGAAGGCAATAATTA-AGATTCAACAATGTGTTCTTTTCAT-TT--ATTCTTCTT-GCATATGCGTAATGCAAT-CTCTATATGTT--AATTG--AAATCTTAGCA-------AAATTG-AT-CTAAG-GCTTGACTA-TCTCCAAtaaacattgagtactatcagttattctctatttttgtccaggaaatacatgtataccggtcgtcaaaattcatggtaaacagttgcttgaaatgtcagtcattttcaaagtacgaaaagaggacgtcttaacaatagccaaaatcaacgaatt
gi|19 : ataatatcattagctctgtcTTGTCCACT--GGAGTTACCA-TTCTAA-GAA-G-
gi|2 : agaAAGAATACAGCA-CAATTTAAAACACACTGCCCCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAGCCTTGCTTAGTAGTTTAGATACCATGATTTGCAATTTTACATCCTATATCCTAAAGATGTATGTATACTCAATATTTATTATTTTGTGGGTT-CATTT-TAC-ATGTA-T-T-GTATGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACG-AAAA---ATTCGGAATTTCAAGTACCGG----TACT-TTTATAAAATGA-G-ACACCAATATATTAAATATGTATACATATTTGT-CAC-AT-GTT-AA--TAAT-T--C-T---AATTTTCTTTCAA---AC--A--AAATGC-ATT-A--TGCATT-TTTTT--TC-------AA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-ACAT------TATCTC----ATT-GTGCAAATGTTGT--AAATA--T-A-T-GGTAAGTGAAATCCCGGAG---------TGA-----AAT-------------AA-CGT-TG-TTGAATTTCTCTC---AATA-TGAAG-CAATATTTA-A-ATTCACAAATATG-------CAT-TT--ATTCTTCAT-GCATATG-GTAA----A------------T--A-TTG--AAATATTGGTA-----T-ACATTT-GT-CCAAGTGCTTAACTA-TCTCCAAGG-----CAATGCT---TTCT-----TCCAAGGCAAAGTCT----CC-AAGTA---A------G------CA---ACATAA-TTCTT----GAAATTT--AAA-TTTGTTTCTCCAATTTTTTTTTTAATT-TCAAA-TG-TGTTTCTCC-AAGAATTTTTT---AATTGC------G-TCTTCAAGATCCC-TGTTTT-TAATTTTC-AAT-AAAACT-TTAAAATTTATGTATTGTCCACT--GGAGTTACAATTTTTAA-AAA-A-AATAtaagcattaattacaatcagttatttctttttttgtccaggaaatgttagtcaaaaattcatattaaaacagttgcctgaaatgtcagtctactttaatacgaaaaagggaacatcttaacgatagtcaaaatcaacgaattcaat
gi|20 : ATTT-TT-CCAACTGCTTGACTA-TCTCTAGAGATAAACAATGACTATCTCTAGAGATACGAA----ATTCTCCTCCA-A-GTGAGCA--T---G------C----CAAAGG--TTTT----GACATTT--GAT-TTTATTTCT----TGTTCCTTTT
gi|21 : tgatttacgtgcagttacggtcaaaaacattcttgagacgTCC-AAGATTTTTTTTTTAAGTGTATC-AGAATCTTCAAGATCTC-CGTTTTGTTATTTTC-AATAAAAACTTGTAAAATTTATGTTTTGTCCACT--GGAACTACCA-CTTTAA-AAA-ATAATctttt
gi|23 : AAGAATACAGCA-CAATTTGCAACACACcattaatactaacagttttctctctctctcctttttttttt
gi|26 : ttttaggtacagtagatcacctccatataaatactatgcaagtcattttagactattttttaaattcacatctttcataatgagctttcattTACTCAATATTTATTATATTGTCGGTTCCATTT-TAC-ATGCA-T-T-GTGTGGTTCTATTTA-CAGAG
gi|3 : gAAGAATACAGCA-CAATT-----------GCCTCCCTCTCGACAAATC------------A------------TCATTTACTTGATGATAGTCAGTCTTGCTTAGTAGTTTAAATACCGTGTTTTGCAATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTATATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-ATTTG---A-TATAC-CATGGTGGTCCTTTTGAACA-AAAA---AATTGGAATTTTAAGTACCGG----TACT-TTGATAGAATGA-G-ACACCA-------------GTATACATATGTGT-CAC-ATGTTT-AAAATAAT-T--C-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TCTTT--TC-------AA--AATCA-TCATA--CTGTCTT---TCAAAAT-AA-ACATGA------TCTC----TCT-GTGCAAATGTTGT--AA--A--T-A-T-GGTA-------------AG---------TGA-----AATCCCGGAGTGAAATAG-CGC-TGATTGTATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-ATTCACAAATGTT-------CAT-TTACATTCTTCAT-GCATCTG-GT-ATATCATGCTCA-TGTTTT--A-TTG--ATATATTGGTA-----T-A
gi|4 : ttttaaaattcacacctttcgtaatgagctttaatt------------TCATCACCTTGGTGATAGTGAGTCTTGCTTAGGAGTTTAAACGCCATGGTTTGCTAATCTGAAT--TACATCCTAA-----TATGTATACTCAATATTTATTATATTGTGAGTTCTATTT-TAC-ATGTA-T-T-GTGTGATTTTATTTA-CAGAGA--TTTAATTACCTGA--TTG-GA-GTTTA---A-TATAA-TATAGTGGTCCGTTTGAATA-AAGC---ATTTGGAAATTTGAGTACCGG----TACT-GTGATAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-GT-TTT-AA--TTAT-T--G-T---AATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATT-TTTTTGGTC-------TT--AACCA-TCATA--CTGTCTG---TCAAAAT-AA-ACAT------GATCTC----AAT-GTGCACACATTGC--AA--A--T-A-T-GGTA-------------AA---------TAA-----AAT-------------AA-CGC-TG-TTGAATTT-TCTC---AATA-TGAAG-CA------A-A-ATT--------TG-------CAT-TT--ATTCTTCAT-GCATCTG-GTAATGTCATGCTCT-TATTTT--A-TTGA-AAATCTTAACATACTGT-ACATTT-AT-CTAAGTGCTTGACTA-TCTCCAAGG-----CAATG-----TCC-------CCAAG----AAT-T----CA-ATAT-------------------------------------------------AA-TTTGTTTCTCCAATATTTTTTTAAATT-T-AAA-TT-TGTTTCTCC-AAGA
gi|5 : AAAATACAGCAACAATTTACA-CACACTGCCTCCCTCTCGACAAATC------------G------------TCATCTACTTGGTGATAGTCAACCT-GCTTAGTTGTTTAAATACAATTATTTGCCATTCTAAATCCTATATCCTAAAGATGCATGTATACTCAATATTTATTACATTGTGGGTTCCATTT-TAC-ATGTA-T-T-GTGTGGTTTTATTTA-CAGAGT--TTTAATTACTTGA--TTG-GA-ATTTA---A-TATAA-TATGGTGGTCCGTTTGAACA-AAAA---AATTGGAATTTTAAGTACCAG----
gi|6 : atagagccagtgaatgtctgatactatttgaaagtttatgatttcaattgacatggaatgcgatgaaggatgcatgaaaatcaagttcaccaagtgtttcctttatttttaggtacaattagatcacctccatataaaggcatgtttagaccatttttaaaaatcatgcctttcataattagctttaacttTGTATACTCAATATTTATTATATTGTGAGTTCCATTT-TAC-ATGTA-T-T-GAGTGGTTTTATTTA-CAGAGT--TTTAATTACCTGA--TTG-GA-GTTTA---A-TACAA-TATAGTGGTCCGTTTGAACA-AAAC---ATATGGAAATTTAAGTACCGG----TACT-GTGACAGTATGA-G-ACACC-A------------GTATACATATGTGT-CAC-AT-CTT-AA--TTAT-T--C-TATAAATTTGCTTTCAA---AC--A--AAATGC-ATT-A--T-CATTATTTTT--TTTGTGGTGAA--AACCA-TCATA--CTGTCTT---TCAAAAT-AA-GCAT------GATCTC----ATT-GTGCACATATTGC--AA--A--T-A-T-GGTA-------------AA---------TAA-----AAT-------------AA-CAC-TG-TTGAATTT-TCTC---AATA-TGAAG-CAATATGTG-C-ATT------------------AT-TT--ATTCTTCAT-GTACCTG-GTAATGTCATGCTCT-TATTTC--A-TTGA-AAATCTTAGCA-----T-ACA----------------TGACTA-TCTCCAAGG-----CAATG-----T--C-----TCCAAG----AAattggt
gi|7 : AAGAATACAGCA-CAATTTGCAACACACTGCCTCCCTCTCGACAAATCAGAAAACATGAAG------------TCATCACCTTGGTGATAGGCAGTCTT----AGGAATTTAAACGCCATAATTTGCTGCTCTAAATTCTACATCCTAA-----TATGTATACTCAAAATTTATTACATTGTGGGTct
gi|8 : atagaaccagtgaatgtctgataaagttgaaagttaataattgttttatgaaatttcatgtgacatggaatgcatggaggatgcaagaaatcattatcaccaagcgttccccttatttttagatacaatagattacctgcatataaaatactatgcaaatcattttagaccatttttgaaattcacatgtttcataatgagctttaatt-----AAT-------------AA-TGC-TG-CTGAATTTCTCTC---AGTA-TGAAG-CAATATTTA-A-GTTCACAAATGTA-------CAT-TT--ATTCTTCAT-GCATCTG-GTAATGTCATGGTCA-TATTTT--A-TTGAAAAAAAATAGTA-----T-ACATTT-GT-CAAAGTACTTGACTA-TCTCCAAGG-----CAATG-----T--T-----TCCATG----AA-CT----CA-ATATA---ATTT---G------TTTCACCAAGA-TTTTTTTTAAAAATTT--AAA-TTTGTTTCTCC-ATGATTTTTGTAATT-TTAAA-TG-TGTTTCTCC-AAGATTTTGTT---AATTGT------A-TCTTCAAGATCTC-CGTTTT-TAATTTTT-CAT-AAAACT-GTAAAATT--TGTTTTGTCCACT--
gi|9 : atAAG-CAATATTTA-G-ATTCACCAATGTG-------CATCTT--ATTCTTCTTTGCATTTG-GTAAT-TCA-G-TCT-AATTAT--T-TTG--AA-TCTT-GCA-----T-ACATTT-GT-CTA-GTGCCTGACTACTCTCCAAGG-----CAAT------TTCT-------CAAG----AACCA----TACATTTG---T--T---T------C----TCAAGA-TTTTT----GAA-TTT--AAA-ATTGTTGCCCAAAT---TTTTGTAATTCTAAAA-TGATGCTTCTCC-AAGATTTTTT----AATTGTACCAAGA-TCTTCAAGATCTCGCGTTTT-TGATTTTC-AA-AAAAACT-GTAAAATTTATTTTTAGTCCATTTGGAAATTA-CA-CTTTAATAAA-T-AATtaaaaaaataaaca
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|17 ): ATAGAACCAGTGAATGTCTGATAAATTTGAAAGTTAATGATTGTTTTATCAAATTTCATGTGACATGGAATGCTGAAGGATGCAGGAAATCATGTTCACTAAGTGTTCCCCTTATTTTTAGGTACAATATGCAATAGATCACCTCCATATAAAATACTATGCACATCATTTTAGACCATTTTTGAAATTCACATCTTTCATAACGTGCTTTAATTAAGAATA
Unaligned ( gi|22 ): ATAGAAGGAGTGAATGTCTGATATATTTGAAAGTTTATGATTTCATGTGACGTGGAATGCATGAAGGATGCATGAAATCAAGTTCACCAAGTGTTTCCCTTGTTTTTAGGTACAATAGGTCACCTCCATATAACGT
Unaligned ( gi|24 ): TAGAACCAGTAAATGTTTGATAAATTTGAATTTATGATTCATGTTGACAAGGAAATGCCATGAGGATGCATGAAACCGGAGTCACCAAGTGTTTTC
Unaligned ( gi|25 ): TTGAAAATGTTCAATCATTATAATACAAAAGAGGAACGTTCTAACAATTAGTACAACATCAAAACGAATTCAAT
Unaligned ( gi|27 ): ATACGAAAAGAGGGCGTCTTAACAATAGCCAAAATC