lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111111111111 11111111111111111111111111
lowQualScore : 222 22222222 222222 1 11111111111111111111111111 11 1 3333 1 4444444444444444444444444444444444444444444 11111111111 222222 2222 666666666666 8888888888888888888 1 1 1 1 1 00000000000000000000000000 44444444444 2222 11 444444 1 1 1 1 3 11 11 1111 1111 1 1 1 111111 2222222222222222222222222222 111111 77777 66666666666666 3 1111
lowQualScore : 000 44444444 0 8 3 3 8 444444 3 1 1 0 99999999999999999999999999 6 6 7 7 0 7 3 3 66 3 3 3 2 0 8888 0 0 9999999999999999999999999999999999999999999 3 6 88888888888 888888 8888 888888888888 6 3 1111111111111111111 6 5 7 6 1 7 3 7 6 2 6 7 6 5 7 44444444444444444444444444 77777777777 1111 00 555555 5 5 6666 0 0 0 9 11 2 55 7 1 77 5 33 5 6 2222 2222 1 5 2 88 2 666666 5 5 8888888888888888888888888888 99 666666 5 0 11 33333 5 0 77 6 0 0 8 88888888888888 0 0 1 0 0 7777 0 5
lowQualScore : ... ........ . . . . . ...... . . . . .......................... . . . . . . . . .. . . . . . .... . . ........................................... . . ........... ...... .... ............ . . ................... . . . . . . . . . . . . . . . .......................... ........... .... .. ...... . . .... . . . . .. . .. . . .. . .. . . .... .... . . . .. . ...... . . ............................ .. ...... . . .. ..... . . .. . . . . .............. . . . . . .... . .
lowQualScore : 888 00000000 8 0 2 2 0 444444 2 0 8 6 33333333333333333333333333 7 7 3 3 7 3 2 2 55 2 2 2 5 0 5555 0 2 0000000000000000000000000000000000000000000 2 5 00000000000 888888 3333 333333333333 0 0 0000000000000000000 0 0 0 0 0 3 7 3 0 5 0 0 0 0 3 00000000000000000000000000 00000000000 2222 55 222222 5 5 2222 0 0 0 8 22 5 55 3 7 99 7 66 7 0 1111 1111 4 1 1 66 4 444444 7 7 9999999999999999999999999999 66 444444 7 1 11 11111 7 1 11 0 8 8 0 88888888888888 8 8 0 2 8 6666 6 0
consensus : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTC-T---GATGCACATTGANCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATGA-ATCGAA-TTACA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AAGGTTTCATCCTTCTCTTAAAAAC--AAAAAT-ATACAAAGAACTACGA------AA-TTGCT----AA-GC----------TG--------TTTATAATGTGAACAT---TCTGAC--CAA------TACAAGCACCAACTG----TAGTA------------ACTAATGTTGAATANCATGCGGAGTACTTGAAATCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATGCCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCNAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCGCTAGTTAATTAAA----TTT-ATAG----AGT-GG----AAAATGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTCGAAATTGAGACAAGGAAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGAAAAATTCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GG-A----------TA--AGTTT-------A-TGTTTGAT-ATT--GGT-TTC-AAAGGTA-----CA-TGTA-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTAGAAATACGANGTA----ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Reference ( gi|1 ) : AAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTG-T---GATGCACATTGAGCCCCAGTTTCTAAAATGAAGAAAAGGTTTTCATGATATTGAAATTATA-------------ACTGACTAAAACCTCTGAATATGACAGAATGGCAAAGAAGACTCATAAGGTTTCATCCTTCTCTTTAAAAC--TAAAAT-ATACAAAGAACTACGA------AA-TTGCT----A---T----------TG--------TTTATAATGTGAACAT---TCTTAC--CAA------TATAAGCACCAACTG----TAGTA------------ACTGATGTTGAATATCATGCAGAGTACTTGAGATCATAGTAAAATTGCATGATAGTGAAGATATGATAAACAATAATGTATTGTAATGACTGCAAAGTCGCATGGCACATTTTTAACATAAACTAACAGAAAATATGTGTCATAATGGTGACACAATGGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAAACTATCTTAAGAAATCTTGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AGTCAGTTT-AAAATGAACATTTATA--------A--AACACA----TATTAAGTG-GGCATTTGGTTTTGAAATTGAGACAAGAGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTG-TTTTTAAAGATATAAGGTCTTTAAATATGGGGGGAAATTCATTT--T-C--ACTATT-TTTCTCTGAAATA----TA----TT-CTGAATCAATAAAAACGCCACAGAAATG------GTATCACT-GG-A----------TA--AGTTT-------A-TGTTTGAT-ATT--GGC-TTC-AAAGATATCTGTCA-TGTA-TTTCAGATGTAGAATCACAAGACAATGTGTACAAGTA-AACAATAGACTAGAAATAC-ATGTACG--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAAAACTATATATTTGGTACTTGATTCATAATG
gi|2 : AATAACTACAAA-ACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTA-TTCTGATGAACATTGAGCCCCAGCTTCTAAA-TGAAAAAAAGGTTTTCATGA--------------------------A-TGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCAAAAGGTTTCATCCTTCT--------------AAT-ATACAAAGAACTACGAAATTGCAA-CTGTTTATAA---TGTGAACACTCTGACCAATATTTTATA-TGTAAATGTCTGTATTACTACAAAAAATTTACAAGCACCAACTG----TAGTACTATATATAGTAACTAATGTTGAATAGCATGCGGAGTACTTGAAATCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATGCCTTGTATTGACTGCAAAGTTGGATGGCACATTTTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCAAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAATTAATTAGA----TT-----G----A---------AAAATGAACATTTATA--------A--AACACA----TAATAAGT--GGC-TTTGGTTTTG-AATTGAGACAAGGGAGATT-TA-AA
gi|6 : AATAACTACAAA-A-CTTCAGTGA--CTATTTACAATGTAAACATTCTTAACAAT-TATAGATATATGCTGCATG-CATATATTC-T---GATGCACATTGAACCCCTGTCTCTAAAATGAAGAAAAGGTTTTCATGAAATCGAAATTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AAGGTTTCATCCTTCTCTTAAAAACAAAAAAAT-ATACAAATAACTACGA------AA-TTGC-----A---TC---------TG--------TTTATAATGTGAACAT---TCTGAC--GAA------TATatttcttcttctcattttcattattttcctctgaaatatattctaaaccaataaaacgccacagaaatggtatcactggataagtttatgtttgacattggtttcaaaggtacatgtaaatgtatttcagatgcagaatcacaagacaatatgtacaagtaaacaatagactagaaatacgaagtatgtggatcacatattttgcaaagtatgtataaaactgagtacaaaacttgattcataatga
gi|4 : TAACTACAAATC-TTT----AA--CTACCAACGATATAAACATTCTTAACAAT-Tttcatatgtaaatgtctgtatcattaaatcaa
gi|4 : AACTACGAA-G-TTT----AAAACTGTTTATAATGTGAACATTC-GAACAATATTT---CATATGTTA-ATGTCGTATnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|13 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaAATGTAAACATTCTTAACAAT-TATAGACAT--GCTGCATG-CATACATTC-T---GATGCACATTGATCCCCAGGTTCTAAAATGAAGAAAAGGTTTTCATGAtactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : CTGCATG-CATGAATTACT---GATGCG--TTGATTCC---TGTCTAAA-TTAAGAAAGAGTTTTCATGA-ATTGAA-TTACATAAACTTGTAAACACTTACTAAAAC-TCTG--TA----AGTA----AAAAAAGGC----AAGGTTTCTTCCT---CTTTAAAA----AAAAT-ATACATAAAACTACGA------AG-TT--T----AAAAC----------TG--------TTTATAATGTGAACAT---TC-GAA--CAA------TATaa
gi|18 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggaATATATTC-T---GATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|12 : GGCAA-GAAGACTCATA-GGTCTCA-CCTTCTCTTAAAAAC--AAAAATTATACAAAGAACTACGA------AAGTTGCG----AACGC----------TGT-------TTTATAATGTGAA-AT---TCTGAC--
gi|3 : ------TACAAGCACCAACTG----TAGTA------------GCTAATGTTGAATATC-------------------ATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATATCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATA-------------TATGTATCATAATGGTGACACAGTAGAAAACAGAGTAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AGTCGGTTGAAAAATGAACATTTATA--------A--AATGCA----TATTAAGT--GGC-TTTGCTTTTG-AATTGAGACAAGAAAGATT-TA-AA
gi|4 : atatgtaaatgtctgtattactacaaaaaacAAGCATCAACTGCATGTAGTA------------ACTATTGTTCAATatttcttcttcttcggatacacattgctttttaaagatataagttctttaaatatggggggagtcattttccctattttcctttgaaatatattctgaataaaacgccacagaaatggtatcactgaagaagtttatgtttgatattggtttcaaaggcacatgtttttcagatgtagaatcacaagacaatatgtacaagtaaacaacaatctaa
gi|19 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaGACTGCAAAGTTGCATGGCACATTCTTAACtttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|17 : gtatgTAAACTAACAAAAAATATGT------ATAGTGAAACAACAGAAAACAGAATAGTTTAA
gi|7 : TATATCGCTAGTT--TTAAAATAGTTTAATAGTAAAAGTGGA----AAAATAAACATTTATACTGAATATA--ACCACATGTGTATTGTGTG-GG--TTTGGTTTCAAAA-TGAGACA--AAACATT-TATAAT
gi|5 : -AAAATGATCATTTATA--------CTTAATATA----TATT--GTGTAGC-TTTAGTCTTGAAA-TGAGCCAAAGCAGATTCTA-AATttatccttatttatattgctttttaaagaaaaaataaaaaaaaaaatccttttttcattattttcctctggaatatattattgaaccaatagacaccacaaaaatggtactagtatcactggaatcctctatgtaaagtaattgtttgaaattggttacaaaagtgcatgattcagat
gi|7 : gttaaTTATATTGCTTTTTAAAGA---AA-------AAATAAAAAAAAAAATCCTTTT--TTC--ATTATT-TTCCTCTGGAATA----TA----TTATTGAACCAAT--AGACACCACAAAAATGGTACTAGTATCACT-GG-AATCCTCTATGTA--AAGTA-------ATTGTTTGAA-ATT--GGT-TAC-AAAAGTG-----CA-TG-A--TTCAGATtgaaatttctccttatttgtattgctttttgaagaaataagttctttaaatatgaaaacaattattttccattatcttcctcttgggtttattgctaaaccaatagacaacacaaaatggcatcactgacattttctacagaacgtaattgtttaaagaaacatgtagttcagatgtagaatcacaagacaatacgtacaagcataacaattaactagtaatatgaagcatgtgtatcaaatatttggcaaattatgtttaatattgtgtacaaaacttgtttgatattcgattcataat
gi|3 : tatatcgctagttttaaaatagtttaatagtaaaagtggaaaaataaacatttatactgaatataaccacatgtgtattgtgtgggtttggtttcaaaatgagacaaaacatttataatttatccttatCACATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGGGAG--TCATTT--T-C--CCTATT-TTCCTTTGAAATA----TA----TT-CTGAAT-----AAAACGCCACAGAAATG------GTATCACT-GA-A----------GA--AGTTT-------A-TGTTTGAT-ATT--GGT-TTC-AAAGGCA-----CA-TGTT-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAACAATCTA
gi|15 : atatgtaaatgtctgtattactacaaaaaactacaagcaccaactgtagtagctaatgttgaatatcatagtaaaattgcataatagtgaagatatgataaacaataatatcttgcattgactgcaaagttgcatggcacattcttaacatatatgtatcataatggtgacacagtagaaaacagagtagtttgatttatttccaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactagttaattaaattttatagagtcggttgaaaaatgaacatttataaaatgcatattaagtggctttgcttttgaattgagacaagaaagatttaaaatttcttcttcttcggataCATATTG-CTATTAAAGATATTAGGTATTTAAATATGGGGGAAAATTCATTTTCT-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAAa
gi|5 : TATTGCTTTTTGAAGAAATAAGTTCTTTAAATATGAAAACAA--TTATTT--T-CC-ATTATC-TTCCTCTTGGGTT----TA----TTGCTAAACCAATAGA--CAACACA-AAATG------GCATCACT-GACA----------T-----TTTCTACAGAA-CGT---A--ATT--G---TTT-AAAGAAA-----CA-TGTA-GTTCAGATGTAGAATCACAAGACAATACGTACAAGCATAACAATTAACTAGTAAT---ATGAAGC--ATGTGTATCAAATATTTGGCAAATTATGTTTAATATTGTGTAC-AAAACT---TGTTTGATATTCGATTCATAAT
gi|9 : gttaaaaaatgatcatttatacttaatatatattgtgtagctttagtcttgaaatgagccaaagcagattctaaattgaaatttctccttatttgTTAAATATGGGGAAAAATTCATTT--T-CTCATTATT-TTCCTCTGAAATA----TT----TT-CTGAACCAAT-AAAACGCCACA-AAATG------GTATCACT-GG-A----------TA--AGTTA-------T-TATTTGAT-AT-----------A-----------CA-TGTA-TTTTAGATGTAGAATCACAA
gi|8 : GGAAAAATTC-TTT--T-C--ACTATCATTCCTCTGAAATAATATTAATTTTT-ATGAACCAAATACAACGCCACAAAAATG------GTATCACTGGG-A----------TAAGAGTGT---------TGTTTGATAATTCGGGTGTTCAAAAGATAAC-ATCA--GTAGTTTTTGATGTAG-ATCACAAGTCAATATATAC------AACAATAGAATAGGAA----ATTTGAGGTATGTGG-TAACATATTTTGCAA--TATGTATAAAACTGCGTAC-CAAACTA-AAATGT-GTACTTGATTCA
gi|2 : tgaaTCATTT--T-C--ATTATT-TTCCTCTGAAATA----TA----TT-CTAAACCAATAAAA-CGCCACAGAAATG------GTATCACT-GG-A----------TA--AGTTT-------A-TGTTTGAC-ATT--GGT-TTC-AAAGGTACATGTAAATGTA-TTTCAGATGCAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTAGAAATACGAAGT-----ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAA---------------ACTTGATTCATAATG
gi|10 : aataactacaaaactttgactatctacaatgtaaacattcttaacaattatagacatatgctgcatgcatatattattctgatgaacattgagccccagcttctaaatgaaaaaaaggttttcatgaatgactaaaacctctgaatatgacaaaatggcaaagaagactcaaaaggtttcatccttctaatatacaaagaactacgaaattgcaactgtttataatgtgaacactctgaccaatattttatatgtaaatgtctgtattactacaaaaaatttacaagcaccaactgtagtactatatatagtaactaatgttgaatagcatgcggagtacttgaaatcatagtaaaattgcataatagtgaagatatgataaacaataatgccttgtattgactgcaaagttggatggcacatttttaacataaactaacagaaaatatgtatcataatggtgacacaatagaaaacagaatagtttgatttatttcaaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactaattaattagattgaaaaatgaacatttataaaacacataataagtggctttggttttgaattgagacaagggagatttaaaatttcttcttcGAAGCAATAAAA-CACCAC-TAAATG------GTATCACT-GG-A----------TA--AGTTT-------A-TGTTTGAT-ATT--GGT-TTC-AGAGATA-----CA-TGCA-TTTCAGATGTAGAATCACAATACAATATGAACAAGa
gi|11 : A-AACAATAGACTAGAAATACGAGGTA-----TGTGGATCACATATTTTGCAAAGTATGGATAAAACTGAGTAC-AAAACTATATATTTGGCACTTGATTCATAATG
gi|14 : CTATAAATACGAGGTA-----TGTGGATCCAATATTTTATAAAGTATGTATAAAACTGACTAC-AAAACTATATATTTGGTACTTGATTCATAATG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): ATATGTTAATGTCTGTATTACTACAAAAAAATTTAAAAGCATCAACTGCATGTAGTAACTATTGTTCAATT
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 111 1111 11 111 666666666666666666666666 11 1 111111 0000000000000000000000000000000000 1111 11 111111 3333 444444444444 1111111 1 777777777777777777777777777777 33333333333 1111 11 1 1 6666666666666666666666666666666666666666666666666666666666666 11 1111 1111 1 111111 2222222222 11 11111 111111 3333 11
lowQualScore : 444 7777 11 6 0 0 6 888 1 3 7 8 8 888888888888888888888888 2 3 3 0 0 22 8 0 0 0 1 888888 8 8 1111111111111111111111111111111111 0 3 0 0 7777 11 999999 0 4444 111111111111 1 1111111 9 0 4 0 2 3 0 2 1 0 2 3 666666666666666666666666666666 8 55555555555 7777 44 88 8 2 0 0 666 8 8 1111111111111111111111111111111111111111111111111111111111111 0 6 5 0 66 5 11 5 0000 0000 0 9 6 9 444444 5 1111111111 66 11 888 99999 0 66 5 5 1 5 22222 66 444444 55 6 5 1 2222 6 00 2
lowQualScore : ... .... .. . . . . ... . . . . . ........................ . . . . . .. . . . . . ...... . . .................................. . . . . .... .. ...... . .... ............ . ....... . . . . . . . . . . . . .............................. . ........... .... .. .. . . . . ... . . ............................................................. . . . . .. . .. . .... .... . . . . ...... . .......... .. .. ... ..... . .. . . . . ..... .. ...... .. . . . .... . .. .
lowQualScore : 888 0000 00 7 8 8 7 333 0 7 3 0 0 000000000000000000000000 5 2 2 8 8 66 0 8 8 0 0 222222 0 0 6666666666666666666666666666666666 8 2 8 8 0000 00 222222 2 0000 000000000000 4 8888888 2 2 0 7 0 2 2 5 0 0 0 2 222222222222222222222222222222 0 88888888888 0000 88 00 0 8 6 6 444 0 0 0000000000000000000000000000000000000000000000000000000000000 8 0 4 4 99 0 99 0 6666 6666 0 5 2 6 444444 0 9999999999 99 55 888 99999 4 99 0 0 1 0 55555 99 444444 11 7 7 0 0000 7 33 5
consensus : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAAT-ATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCATGTAGT------------AACTAATGTTGAATATCACGCGGAGTACTTGAGATCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCT-GGCAATTCTCCATATATAGCACTAGTTAATTAAAT---TTTA-TAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAATTCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Reference ( family-2266 ) : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGANCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTACA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAAT-ATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTG----TAGT------------AACTAATGTTGAATANCATGCGGAGTACTTGAAATCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATGCCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCNAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCT-GGCAATTCTCCATATATAGCGCTAGTTAATTAAA----TTTA-TAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTCGAAATTGAGACAAGGAAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGAAAAATTCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGANGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
gi|1 : AATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---GTGATGCACATTGAGCCCCAGTTTCTAAAATGAAGAAAAGGTTTTCATG-ATATTG-AAATTATA-------------ACTGACTAAAACCTCTGAATATGACAGAATGGCAAAGAAGACTCATAA-GGTTTCATCCTTCTCTTTAAAAC--TAAAAT-ATACAAAGAACTACGAAA-TTGC---------T-A-----------TTG--------TTTATAATGTGAACATTCTT----AC--CAA------TATAAGCACCAACTG----TAGT------------AACTGATGTTGAATATCATGCAGAGTACTTGAGATCATAGTAAAATTGCATGATAGTGAAGATATGATAAACAATAATGTATTGTAATGACTGCAAAGTCGCATGGCACATTTTTAACATAAACTAACAGAAAATATGTGTCATAATGGTGACACAATGGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAAACTATCTTAAGAAATCT-TGCAATTCTCCATATATAGCACTAGTTAATTAAAT---TTTA-TAG----AG-----TCAGTTTAAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGCATTTGGTTTTGAAATTGAGACAAGAGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTG-TTTTTAAAGATATAAGGTCTTTAAATATGGGGGGAAATTCATTT--T-C--ACTATT-TTTCTCTGAAATA----TA----TT-CTGAATCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGC-TTC-AAAGAT-ATCTGTCAT--GT------A-TTTCAGATGTAGAATCACAAGACAATGTGTACAAGTA-AACAATAGACTA-GAAATAC-ATGTACGATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAAAACTATATATTTGGTACTTGATTCATAATG
gi|10 : aGAAGCAATAAAA-CACCAC-TAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AGAGAT-A-----CAT--GC------A-TTTCAGATGTAGAATCACAATACAATATGAACAAG
gi|11 : A-AACAATAGACTA-GAAATACGAGGTA---TGTGGATCACATATTTTGCAAAGTATGGATAAAACTGAGTAC-AAAACTATATATTTGGCACTTGATTCATAATG
gi|12 : GGCAA-GAAGACTCA-TA-GGTCTCA-CCTTCTCTTAAAAAC--AAAAATTATACAAAGAACTACGAAAGTTGC---------G-AAC--G------CTGT-------TTTATAATGTGAA-ATTCTG----AC--
gi|13 : AATGTAAACATTCTTAACAAT-TATAGACAT--GCTGCATG-CATACATT---CTGATGCACATTGATCCCCAGGTTCTAAAATGAAGAAAAGGTTTTCATG-A-A
gi|14 : CTA-TAAATACGAGGTA---TGTGGATCCAATATTTTATAAAGTATGTATAAAACTGACTAC-AAAACTATATATTTGGTACTTGATTCATAATGa
gi|15 : CATATTGCTATT-AAAGATATTAGGTATTTAAATATGGGGGAAAATTCATTTTCT-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAA
gi|16 : ------TAAAAGCATCAACTGCATGTAGT------------AACTATTGTTCAAT
gi|17 : atatgttaatgtctgtattactacaaaaaaattTAAACTAACAAAAAATATGTAT------AGTGAAACAACAGAAAACAGAATAGTTTAAt
gi|18 : ATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAA
gi|19 : GTATGGACTGCAAAGTTGCATGGCACATTCTTAAC
gi|2 : AATAACTACAAA-ACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTATTCTGATGAACATTGAGCCCCAGCTTCTAAA-TGAAAAAAAGGTTTTCATG-A-AT---------------------------GACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AAAGGTTTCATCCTTCT--------------AAT-ATACAAAGAACTACGAAA-TTGCAACTGTTTAT-AATGTGAACACTCTGACCAATATTTTATA-TGTAAATGT-CTGTATTACTACAAAAAATTTACAAGCACCAACTG----TAGTACTATATATAGTAACTAATGTTGAATAGCATGCGGAGTACTTGAAATCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATGCCTTGTATTGACTGCAAAGTTGGATGGCACATTTTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCAAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCT-GGCAATTCTCCATATATAGCACTAATTAATTAGA----T------------------T-GA---AAAA-TGAACATTTATA--------A--AACACA----TAATAAGT--GGC-TTTGGTTTTG-AATTGAGACAAGGGAGATT-TA-AA
gi|2 : TCATTT--T-C--ATTATT-TTCCTCTGAAATA----TA----TT-CTAAACCAATAAAA-CGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---C-ATT--GGT-TTC-AAAGGT-A-----CAT--GTAAATGTA-TTTCAGATGCAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAAGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAA--------------ACTTGATTCATAATGatttcttcttctcattttcattattttcctctgaaatatattctaaaccaataaaacgccacagaaatggtatcactggataagtttatgtttgacattggtttcaaaggtacatgtaaatgtatttcagatgcagaatcacaagacaatatgtacaagtaaacaatagactagaaatacgaagtatgtggatcacatattttgcaaagtatgtataaaactgagtacaaaacttgattcataatga
gi|3 : aataactacaaaactttgactatctacaatgtaaacattcttaacaattatagacatatgctgcatgcatatattattctgatgaacattgagccccagcttctaaatgaaaaaaaggttttcatgaatgactaaaacctctgaatatgacaaaatggcaaagaagactcaaaaggtttcatccttctaatatacaaagaactacgaaattgcaactgtttataatgtgaacactctgaccaatattttatatgtaaatgtctgtattactacaaaaaatttacaagcaccaactgtagtactatatatagtaactaatgttgaatagcatgcggagtacttgaaatcatagtaaaattgcataatagtgaagatatgataaacaataatgccttgtattgactgcaaagttggatggcacatttttaacataaactaacagaaaatatgtatcataatggtgacacaatagaaaacagaatagtttgatttatttcaaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactaattaattagattgaaaaatgaacatttataaaacacataataagtggctttggttttgaattgagacaagggagatttaaaatttcttcttc------TACAAGCACCAACTG----TAGT------------AGCTAATGTTGAATA-------------------TCATAGTAAAATTGCATAATAGTGAAGATATGATAAACAATAATATCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATA-------------TATGTATCATAATGGTGACACAGTAGAAAACAGAGTAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCT-GGCAATTCTCCATATATAGCACTAGTTAATTAAAT---TTTA-TAG----AGTCGGTT-GA---AAAA-TGAACATTTATA--------A--AATGCA----TATTAAGT--GGC-TTTGCTTTTG-AATTGAGACAAGAAAGATT-TA-AAa
gi|3 : atatgtaaatgtctgtattactacaaaaaacCACATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGGGAG--TCATTT--T-C--CCTATT-TTCCTTTGAAATA----TA----TT-CTGAAT-----AAAACGCCACAGAAATG------GTATCACT-GAA----------GA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGC-A-----CAT--GT------T-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAACAATCTA-atttcttcttcttcggatacacattgctttttaaagatataagttctttaaatatggggggagtcattttccctattttcctttgaaatatattctgaataaaacgccacagaaatggtatcactgaagaagtttatgtttgatattggtttcaaaggcacatgtttttcagatgtagaatcacaagacaatatgtacaagtaaacaacaatctaa
gi|4 : atatgtaaatgtctgtattactacaaaaaactacaagcaccaactgtagtagctaatgttgaatatcatagtaaaattgcataatagtgaagatatgataaacaataatatcttgcattgactgcaaagttgcatggcacattcttaacatatatgtatcataatggtgacacagtagaaaacagagtagtttgatttatttccaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactagttaattaaattttatagagtcggttgaaaaatgaacatttataaaatgcatattaagtggctttgcttttgaattgagacaagaaagatttaaaatttcttcttcttcggataTAACTACAAATC-TTT----AA--CTACCAACGATATAAACATTCTTAACAAT-Ta
gi|4 : CTGCATG-CATGAATTA--CTGATGCG--TTGATTCCTG---TCTAAA-TTAAGAAAGAGTTTTCATG-A-ATTG-AA-TTACATAAACTTGTAAACACTTACTAAAA-CTCTG--T------AAGTA--AAAAAAGGC----AA-GGTTTCTTCC-TCT-TTAAA-----AAAAAT-ATACATAAAACTACGAAG-TT-----------TAAA---A------CTG--------TTTATAATGTGAACATTC-G----AA--CAA------TAnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggaAACTACGAA-G-TTT----AAAACTGTTTATAATGTGAACATTC-GAACAATATTT---CATATGTTA-ATGTCGTATtttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaAAGCATCAACTGCATGTAGT------------AACTATTGTTCAATTTTACAAGGAG-ATTTGtactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaTTTAGAAGTCTGGGCAAATCTCCTTGTAcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|5 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattt---AAAA-TGATCATTTATA--------CTTAATATA----TATT--GTGTAGC-TTTAGTCTTGAAA-TGAGCCAAAGCAGATTCTA-AATagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|5 : gttaaTATTGCTTTTTGAAGAAATAAGTTCTTTAAATATGAA-AACAATT-ATTT--T-CC-ATTATC-TTCCTCTTGGGTT----TA----TTGCTAAACCAATAGA--CAACACA-AAATG------GCATCACT-G-A----------CA----TTT----TCTACAGAACGT-AAT--TGT-TT--AAAGAA-A-----CAT--GT------A-GTTCAGATGTAGAATCACAAGACAATACGTACAAGCATAACAATTAACTA-GTAATATGAAGC---ATGTGTATCAAATATTTGGCAAATTATGTTTAATATTGTGTAC-AAAACT---TGTTTGATATTCGATTCATAATtgaaatttctccttatttgtattgctttttgaagaaataagttctttaaatatgaaaacaattattttccattatcttcctcttgggtttattgctaaaccaatagacaacacaaaatggcatcactgacattttctacagaacgtaattgtttaaagaaacatgtagttcagatgtagaatcacaagacaatacgtacaagcataacaattaactagtaatatgaagcatgtgtatcaaatatttggcaaattatgtttaatattgtgtacaaaacttgtttgatattcgattcataat
gi|6 : gttaaaaaatgatcatttatacttaatatatattgtgtagctttagtcttgaaatgagccaaagcagattctaaattgaaatttctccttatttgAATAACTACAAA-A-CTTCAGTGA--CTATTTACAATGTAAACATTCTTAACAAT-TATAGATATATGCTGCATG-CATATATT---CTGATGCACATTGAACCCCTGTCTCTAAAATGAAGAAAAGGTTTTCATGAA-ATCGAAA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AA-GGTTTCATCCTTCTCTTAAAAACAAAAAAAT-ATACAAATAACTACGAAA-TTGC------------A---T------CTG--------TTTATAATGTGAACATTCTG----AC--GAA------TA
gi|7 : TATATCGCTAGTT--TTAAAATAGTTTAATAGTAAAAG-----T-GG---AAAAATAAACATTTATACTGAATATA--ACCACATGTGTATTGTGTG-GG--TTTGGTTTCAAAA-TGAGACAA--AACATT-TATAATtttcatatgtaaatgtctgtatcattaaatcaa
gi|7 : TTATATTGCTTTTTAAAGA---AA-------AAATAAAAAAAAAAATCCTTTT--TTC--ATTATT-TTCCTCTGGAATA----TA----TTATTGAACCAAT--AGACACCACAAAAATGGTACTAGTATCACT-GGAATCCTCTATGTA--AAGTAATTGTTT---GA---A-ATT--GGT-TAC-AAAAGT-G-----CAT--G-------A--TTCAGATttatccttatttatattgctttttaaagaaaaaataaaaaaaaaaatccttttttcattattttcctctggaatatattattgaaccaatagacaccacaaaaatggtactagtatcactggaatcctctatgtaaagtaattgtttgaaattggttacaaaagtgcatgattcagat
gi|8 : tatatcgctagttttaaaatagtttaatagtaaaagtggaaaaataaacatttatactgaatataaccacatgtgtattgtgtgggtttggtttcaaaatgagacaaaacatttataatttatccttatGGAAAAATTC-TTT--T-C--ACTATCATTCCTCTGAAATAATATTAATTTTT-ATGAACCAAATACAACGCCACAAAAATG------GTATCACTGGGA----------TAAGAGTGT--TGTTT---GA---TAATTCGGGTGTTCAAAAGATAA-----CATCAGT------AGTTTTTGATGTAG-ATCACAAGTCAATATATAC------AACAATAGAATAGGAAATTTGAGGT---ATGTGG-TAACATATTTTGCAA--TATGTATAAAACTGCGTAC-CAAACTA-AAATGT-GTACTTGATTCA
gi|9 : tgaaTTAAATATGGGGAAAAATTCATTT--T-CTCATTATT-TTCCTCTGAAATA----TT----TT-CTGAACCAAT-AAAACGCCACA-AAATG------GTATCACT-GGA----------TA--AGTTAT-TATTT---GA---T-A-----------------T-A-----CAT--GT------A-TTTTAGATGTAGAATCACAA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 111 1111 11 111 666666666666666666666666 1 111111 0000000000000000000000000000000000 1111 11 111111 444444444444 1111 22222222222 1 444444444444444444444444444444 33333333333 1111 11 1 1 666666666666666666666666666666666666666666666666666666666666 11 1111 1111 1 111111 2222222222 11 11111 111111 3333 11
lowQualScore : 444 7777 11 6 0 0 6 888 1 3 7 8 8 444444444444444444444444 2 3 3 0 0 8 8 0 0 0 1 888888 8 8 1111111111111111111111111111111111 0 3 0 0 7777 11 999999 0 666666666666 1 3333 9 0 88888888888 0 3 0 3 3 0 2 3 999999999999999999999999999999 8 55555555555 7777 44 88 8 0 0 666 8 8 000000000000000000000000000000000000000000000000000000000000 0 6 3 1 0 66 0 66 5 11 5 0000 0000 0 9 6 9 444444 5 1111111111 66 11 888 99999 0 66 5 5 1 5 22222 66 444444 55 6 5 2222 6 00 2
lowQualScore : ... .... .. . . . . ... . . . . . ........................ . . . . . . . . . . . ...... . . .................................. . . . . .... .. ...... . ............ . .... . . ........... . . . . . . . . .............................. . ........... .... .. .. . . . ... . . ............................................................ . . . . . .. . .. . .. . .... .... . . . . ...... . .......... .. .. ... ..... . .. . . . . ..... .. ...... .. . . .... . .. .
lowQualScore : 888 0000 00 7 8 8 7 333 0 7 3 0 0 555555555555555555555555 5 2 2 8 8 0 0 8 8 0 0 222222 0 0 6666666666666666666666666666666666 8 2 8 8 0000 00 222222 2 666666666666 4 5555 2 2 00000000000 8 2 0 2 2 2 5 2 888888888888888888888888888888 0 88888888888 0000 88 00 0 6 6 000 0 0 000000000000000000000000000000000000000000000000000000000000 8 0 8 0 4 99 4 99 0 99 0 6666 6666 0 5 2 6 444444 0 9999999999 99 55 888 99999 4 99 0 0 1 0 55555 99 444444 11 7 7 0000 7 33 5
consensus : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Reference ( family-2266 ) : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
gi|1 : AATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---GTGATGCACATTGAGCCCCAGTTTCTAAAATGAAGAAAAGGTTTTCATG-ATATTG-AAATTATA-------------ACTGACTAAAACCTCTGAATATGACAGAATGGCAAAGAAGACTCATAA-GGTTTCATCCTTCTCTTTAAAAC--TAAAA-TATACAAAGAACTACGAAA-TTGC---------T-A-----------TTG--------TTTATAATGTGAACATTCTT----AC--CAA------TATAAGCACCAACTG------------TAGTAACTGATGTTGAATATCATGCAGAGTACTTG---AGA--TCATAGTAAAATTGCATGATAGTGAAGATATGATAA-ACAATAATGTATTGTAATGACTGCAAAGTCGCATGGCACATTTTTAACATAAACTAACAGAAAATATGTGTCATAATGGTGACACAATGGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAAACTATCTTAAGAAATCTTGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----TCAGTTTAAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGCATTTGGTTTTGAAATTGAGACAAGAGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTG-TTTTTAAAGATATAAGGTCTTTAAATATGGGGGGAAAT--TCATTT--T-C--ACTATT-TTTCTCTGAAATA----TA----TT-CTGAATCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGC-TTC-AAAGAT-ATCTGTCAT--GT------A-TTTCAGATGTAGAATCACAAGACAATGTGTACAAGTA-AACAATAGACTA-GAAATAC-ATGTACGATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAAAACTATATATTTGGTACTTGATTCATAATG
gi|10 : aGAAGCAATAAAA-CACCAC-TAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AGAGAT-A-----CAT--GC------A-TTTCAGATGTAGAATCACAATACAATATGAACAAG
gi|11 : A-AACAATAGACTA-GAAATACGAGGTA---TGTGGATCACATATTTTGCAAAGTATGGATAAAACTGAGTAC-AAAACTATATATTTGGCACTTGATTCATAATG
gi|12 : GGCAA-GAAGACTCA-TA-GGTCTCA-CCTTCTCTTAAAAAC--AAAAATTATACAAAGAACTACGAAAGTTGC---------G-AAC--G------CTGT-------TTTATAATGTGAA-ATTCTG----AC--
gi|13 : AATGTAAACATTCTTAACAAT-TATAGACAT--GCTGCATG-CATACATT---CTGATGCACATTGATCCCCAGGTTCTAAAATGAAGAAAAGGTTTTCATG-A-A
gi|14 : CTA-TAAATACGAGGTA---TGTGGATCCAATATTTTATAAAGTATGTATAAAACTGACTAC-AAAACTATATATTTGGTACTTGATTCATAATGa
gi|15 : CATATTGCTATT-AAAGATATTAGGTATTTAAATATGGGGGAAAAT--TCATTTTCT-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAA
gi|16 : ------TAAAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAAT
gi|17 : atatgttaatgtctgtattactacaaaaaaattTAAACTAACAAAAAATATGTAT------AGTGAAACAACAGAAAACAGAATAGTTTAAt
gi|18 : ATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAA
gi|19 : GTATGGACTGCAAAGTTGCATGGCACATTCTTAAC
gi|2 : AATAACTACAAA-ACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTATTCTGATGAACATTGAGCCCCAGCTTCTAAA-TGAAAAAAAGGTTTTCATG-A-AT---------------------------GACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AAAGGTTTCATCCTTCT--------------AA-TATACAAAGAACTACGAAA-TTGCAACTGTTTAT-AATGTGAACACTCTGACCAATATTTTATA-TGTAAATGT-CTGTATTACTACAAAAAATTTACAAGCACCAACTGTAGTACTATATATAGTAACTAATGTTGAATAGCATGCGGAGTACTTG---AAA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATGCCTTGTATTGACTGCAAAGTTGGATGGCACATTTTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCAAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAATTAATTAGA----T------------------T-GA---AAAA-TGAACATTTATA--------A--AACACA----TAATAAGT--GGC-TTTGGTTTTG-AATTGAGACAAGGGAGATT-TA-AA
gi|2 : --TCATTT--T-C--ATTATT-TTCCTCTGAAATA----TA----TT-CTAAACCAATAAAA-CGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---C-ATT--GGT-TTC-AAAGGT-A-----CAT--GTAAATGTA-TTTCAGATGCAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAAGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAA--------------ACTTGATTCATAATGatttcttcttctcattttcattattttcctctgaaatatattctaaaccaataaaacgccacagaaatggtatcactggataagtttatgtttgacattggtttcaaaggtacatgtaaatgtatttcagatgcagaatcacaagacaatatgtacaagtaaacaatagactagaaatacgaagtatgtggatcacatattttgcaaagtatgtataaaactgagtacaaaacttgattcataatga
gi|3 : aataactacaaaactttgactatctacaatgtaaacattcttaacaattatagacatatgctgcatgcatatattattctgatgaacattgagccccagcttctaaatgaaaaaaaggttttcatgaatgactaaaacctctgaatatgacaaaatggcaaagaagactcaaaaggtttcatccttctaatatacaaagaactacgaaattgcaactgtttataatgtgaacactctgaccaatattttatatgtaaatgtctgtattactacaaaaaatttacaagcaccaactgtagtactatatatagtaactaatgttgaatagcatgcggagtacttgaaatcatagtaaaattgcataatagtgaagatatgataaacaataatgccttgtattgactgcaaagttggatggcacatttttaacataaactaacagaaaatatgtatcataatggtgacacaatagaaaacagaatagtttgatttatttcaaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactaattaattagattgaaaaatgaacatttataaaacacataataagtggctttggttttgaattgagacaagggagatttaaaatttcttcttc------TACAAGCACCAACTG------------TAGTAGCTAATGTTGAATATCA------------------------TAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATATCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATA-------------TATGTATCATAATGGTGACACAGTAGAAAACAGAGTAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AGTCGGTT-GA---AAAA-TGAACATTTATA--------A--AATGCA----TATTAAGT--GGC-TTTGCTTTTG-AATTGAGACAAGAAAGATT-TA-AAa
gi|3 : atatgtaaatgtctgtattactacaaaaaacCACATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGGGAG----TCATTT--T-C--CCTATT-TTCCTTTGAAATA----TA----TT-CTGAAT-----AAAACGCCACAGAAATG------GTATCACT-GAA----------GA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGC-A-----CAT--GT------T-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAACAATCTA-atttcttcttcttcggatacacattgctttttaaagatataagttctttaaatatggggggagtcattttccctattttcctttgaaatatattctgaataaaacgccacagaaatggtatcactgaagaagtttatgtttgatattggtttcaaaggcacatgtttttcagatgtagaatcacaagacaatatgtacaagtaaacaacaatctaa
gi|4 : atatgtaaatgtctgtattactacaaaaaactacaagcaccaactgtagtagctaatgttgaatatcatagtaaaattgcataatagtgaagatatgataaacaataatatcttgcattgactgcaaagttgcatggcacattcttaacatatatgtatcataatggtgacacagtagaaaacagagtagtttgatttatttccaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactagttaattaaattttatagagtcggttgaaaaatgaacatttataaaatgcatattaagtggctttgcttttgaattgagacaagaaagatttaaaatttcttcttcttcggataTAACTACAAATC-TTT----AA--CTACCAACGATATAAACATTCTTAACAAT-Ta
gi|4 : CTGCATG-CATGAATTA--CTGATGCG--TTGATTCCTG---TCTAAA-TTAAGAAAGAGTTTTCATG-A-ATTG-AA-TTACATAAACTTGTAAACACTTACTAAAA-CTCTG--T------AAGTA--AAAAAAGGC----AA-GGTTTCTTCC-TCT-TTAAA-----AAAAA-TATACATAAAACTACGAAG-TT-----------TAAA---A------CTG--------TTTATAATGTGAACATTC-G----AA--CAA------TAnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggaAACTACGAA-G-TTT----AAAACTGTTTATAATGTGAACATTC-GAACAATATTT---CATATGTTA-ATGTCGTATtttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAATTTTACAAGGAG-ATTTGCCCAGACTTC----TAAAAGCGTATCTTAG-------ATCATAATATGTTAATGTC-TGTATT-ACTACAAtactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|5 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaattta---AAAA-TGATCATTTATA--------CTTAATATA----TATT--GTGTAGC-TTTAGTCTTGAAA-TGAGCCAAAGCAGATTCTA-AAT
gi|5 : gttaaTATTGCTTTTTGAAGAAATAAGTTCTTTAAATATG----AAAACAATTATTT--T-CC-ATTATC-TTCCTCTTGGGTT----TA----TTGCTAAACCAATAGA--CAACACA-AAATG------GCATCACT-G-A----------CA----TTT----TCTACAGAACGT-AAT--TGT-TT--AAAGAA-A-----CAT--GT------A-GTTCAGATGTAGAATCACAAGACAATACGTACAAGCATAACAATTAACTA-GTAATATGAAGC---ATGTGTATCAAATATTTGGCAAATTATGTTTAATATTGTGTAC-AAAACT---TGTTTGATATTCGATTCATAATtgaaatttctccttatttgtattgctttttgaagaaataagttctttaaatatgaaaacaattattttccattatcttcctcttgggtttattgctaaaccaatagacaacacaaaatggcatcactgacattttctacagaacgtaattgtttaaagaaacatgtagttcagatgtagaatcacaagacaatacgtacaagcataacaattaactagtaatatgaagcatgtgtatcaaatatttggcaaattatgtttaatattgtgtacaaaacttgtttgatattcgattcataat
gi|6 : gttaaaaaatgatcatttatacttaatatatattgtgtagctttagtcttgaaatgagccaaagcagattctaaattgaaatttctccttatttgAATAACTACAAA-A-CTTCAGTGA--CTATTTACAATGTAAACATTCTTAACAAT-TATAGATATATGCTGCATG-CATATATT---CTGATGCACATTGAACCCCTGTCTCTAAAATGAAGAAAAGGTTTTCATGAA-ATCGAAA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AA-GGTTTCATCCTTCTCTTAAAAACAAAAAAA-TATACAAATAACTACGAAA-TTGC------------A---T------CTG--------TTTATAATGTGAACATTCTG----AC--GAA------TA
gi|7 : TATATCGCTAGTT--TTAAAATAGTTTAATAGTAAAAG-----T-GG---AAAAATAAACATTTATACTGAATATA--ACCACATGTGTATTGTGTG-GG--TTTGGTTTCAAAA-TGAGACAA--AACATT-TATAATtttcatatgtaaatgtctgtatcattaaatcaa
gi|7 : TTATATTGCTTTTTAAAGA---AA-------AAATAAAAAAAAAAAT--CCTTTT--TTC--ATTATT-TTCCTCTGGAATA----TA----TTATTGAACCAAT--AGACACCACAAAAATGGTACTAGTATCACT-GGAATCCTCTATGTA--AAGTAATTGTTT---GA---A-ATT--GGT-TAC-AAAAGT-G-----CAT--G-------A--TTCAGATttatccttatttatattgctttttaaagaaaaaataaaaaaaaaaatccttttttcattattttcctctggaatatattattgaaccaatagacaccacaaaaatggtactagtatcactggaatcctctatgtaaagtaattgtttgaaattggttacaaaagtgcatgattcagat
gi|8 : tatatcgctagttttaaaatagtttaatagtaaaagtggaaaaataaacatttatactgaatataaccacatgtgtattgtgtgggtttggtttcaaaatgagacaaaacatttataatttatccttatGGAAAAAT--TC-TTT--T-C--ACTATCATTCCTCTGAAATAATATTAATTTTT-ATGAACCAAATACAACGCCACAAAAATG------GTATCACTGGGA----------TAAGAGTGT--TGTTT---GA---TAATTCGGGTGTTCAAAAGATAA-----CATCAGT------AGTTTTTGATGTAG-ATCACAAGTCAATATATAC------AACAATAGAATAGGAAATTTGAGGT---ATGTGG-TAACATATTTTGCAA--TATGTATAAAACTGCGTAC-CAAACTA-AAATGT-GTACTTGATTCA
gi|9 : tgaaTTAAATATGGGGAAAAAT--TCATTT--T-CTCATTATT-TTCCTCTGAAATA----TT----TT-CTGAACCAAT-AAAACGCCACA-AAATG------GTATCACT-GGA----------TA--AGTTAT-TATTT---GA---T-A-----------------T-A-----CAT--GT------A-TTTTAGATGTAGAATCACAA
Alignments
lowQualScore : 1111111111111111111111111111111111
lowQualScore : 111 1111 11 111 666666666666666666666666 1 111111 0000000000000000000000000000000000 1111 11 111111 444444444444 1111 22222222222 1 444444444444444444444444444444 33333333333 1111 11 1 1 666666666666666666666666666666666666666666666666666666666666 11 1111 1111 1 111111 2222222222 11 11111 111111 3333 11
lowQualScore : 444 7777 11 6 0 0 6 888 1 3 7 8 8 444444444444444444444444 2 3 3 0 0 8 8 0 0 0 1 888888 8 8 1111111111111111111111111111111111 0 3 0 0 7777 11 999999 0 666666666666 1 3333 9 0 88888888888 0 3 0 2 3 3 0 2 3 999999999999999999999999999999 8 55555555555 7777 44 88 8 0 0 666 8 8 000000000000000000000000000000000000000000000000000000000000 0 6 3 1 0 66 0 66 5 11 5 0000 0000 0 9 6 9 444444 5 1111111111 66 11 888 99999 0 66 5 5 1 5 22222 66 444444 55 6 5 2222 6 00 2
lowQualScore : ... .... .. . . . . ... . . . . . ........................ . . . . . . . . . . . ...... . . .................................. . . . . .... .. ...... . ............ . .... . . ........... . . . . . . . . . .............................. . ........... .... .. .. . . . ... . . ............................................................ . . . . . .. . .. . .. . .... .... . . . . ...... . .......... .. .. ... ..... . .. . . . . ..... .. ...... .. . . .... . .. .
lowQualScore : 888 0000 00 7 8 8 7 333 0 7 3 0 0 555555555555555555555555 5 2 2 8 8 0 0 8 8 0 0 222222 0 0 6666666666666666666666666666666666 8 2 8 8 0000 00 222222 2 666666666666 4 5555 2 2 00000000000 8 2 0 0 2 2 2 5 2 888888888888888888888888888888 0 88888888888 0000 88 00 0 6 6 000 0 0 000000000000000000000000000000000000000000000000000000000000 8 0 8 0 4 99 4 99 0 99 0 6666 6666 0 5 2 6 444444 0 9999999999 99 55 888 99999 4 99 0 0 1 0 55555 99 444444 11 7 7 0000 7 33 5
consensus : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Reference ( family-2266 ) : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
gi|1 : AATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---GTGATGCACATTGAGCCCCAGTTTCTAAAATGAAGAAAAGGTTTTCATG-ATATTG-AAATTATA-------------ACTGACTAAAACCTCTGAATATGACAGAATGGCAAAGAAGACTCATAA-GGTTTCATCCTTCTCTTTAAAAC--TAAAA-TATACAAAGAACTACGAAA-TTGC---------T-A-----------TTG--------TTTATAATGTGAACATTCTT----AC--CAA------TATAAGCACCAACTG------------TAGTAACTGATGTTGAATATCATGCAGAGTACTTG---AGA--TCATAGTAAAATTGCATGATAGTGAAGATATGATAA-ACAATAATGTATTGTAATGACTGCAAAGTCGCATGGCACATTTTTAACATAAACTAACAGAAAATATGTGTCATAATGGTGACACAATGGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAAACTATCTTAAGAAATCTTGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----TCAGTTTAAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGCATTTGGTTTTGAAATTGAGACAAGAGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTG-TTTTTAAAGATATAAGGTCTTTAAATATGGGGGGAAAT--TCATTT--T-C--ACTATT-TTTCTCTGAAATA----TA----TT-CTGAATCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGC-TTC-AAAGAT-ATCTGTCAT--GT------A-TTTCAGATGTAGAATCACAAGACAATGTGTACAAGTA-AACAATAGACTA-GAAATAC-ATGTACGATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAAAACTATATATTTGGTACTTGATTCATAATG
gi|10 : aGAAGCAATAAAA-CACCAC-TAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AGAGAT-A-----CAT--GC------A-TTTCAGATGTAGAATCACAATACAATATGAACAAG
gi|11 : A-AACAATAGACTA-GAAATACGAGGTA---TGTGGATCACATATTTTGCAAAGTATGGATAAAACTGAGTAC-AAAACTATATATTTGGCACTTGATTCATAATG
gi|12 : GGCAA-GAAGACTCA-TA-GGTCTCA-CCTTCTCTTAAAAAC--AAAAATTATACAAAGAACTACGAAAGTTGC---------G-AAC--G------CTGT-------TTTATAATGTGAA-ATTCTG----AC--
gi|13 : AATGTAAACATTCTTAACAAT-TATAGACAT--GCTGCATG-CATACATT---CTGATGCACATTGATCCCCAGGTTCTAAAATGAAGAAAAGGTTTTCATG-A-A
gi|14 : CTA-TAAATACGAGGTA---TGTGGATCCAATATTTTATAAAGTATGTATAAAACTGACTAC-AAAACTATATATTTGGTACTTGATTCATAATGa
gi|15 : CATATTGCTATT-AAAGATATTAGGTATTTAAATATGGGGGAAAAT--TCATTTTCT-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAA
gi|16 : ------TAAAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAAT
gi|17 : atatgttaatgtctgtattactacaaaaaaattTAAACTAACAAAAAATATGTAT------AGTGAAACAACAGAAAACAGAATAGTTTAAt
gi|18 : ATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAA
gi|19 : GTATGGACTGCAAAGTTGCATGGCACATTCTTAAC
gi|2 : AATAACTACAAA-ACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTATTCTGATGAACATTGAGCCCCAGCTTCTAAA-TGAAAAAAAGGTTTTCATG-A-AT---------------------------GACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AAAGGTTTCATCCTTCT--------------AA-TATACAAAGAACTACGAAA-TTGCAACTGTTTAT-AATGTGAACACTCTGACCAATATTTTATA-TGTAAATGT-CTGTATTACTACAAAAAATTTACAAGCACCAACTGTAGTACTATATATAGTAACTAATGTTGAATAGCATGCGGAGTACTTG---AAA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATGCCTTGTATTGACTGCAAAGTTGGATGGCACATTTTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCAAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAATTAATTAGA----T------------------T-GA---AAAA-TGAACATTTATA--------A--AACACA----TAATAAGT--GGC-TTTGGTTTTG-AATTGAGACAAGGGAGATT-TA-AA
gi|2 : --TCATTT--T-C--ATTATT-TTCCTCTGAAATA----TA----TT-CTAAACCAATAAAA-CGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---C-ATT--GGT-TTC-AAAGGT-A-----CAT--GTAAATGTA-TTTCAGATGCAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAAGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAA--------------ACTTGATTCATAATGatttcttcttctcattttcattattttcctctgaaatatattctaaaccaataaaacgccacagaaatggtatcactggataagtttatgtttgacattggtttcaaaggtacatgtaaatgtatttcagatgcagaatcacaagacaatatgtacaagtaaacaatagactagaaatacgaagtatgtggatcacatattttgcaaagtatgtataaaactgagtacaaaacttgattcataatga
gi|3 : aataactacaaaactttgactatctacaatgtaaacattcttaacaattatagacatatgctgcatgcatatattattctgatgaacattgagccccagcttctaaatgaaaaaaaggttttcatgaatgactaaaacctctgaatatgacaaaatggcaaagaagactcaaaaggtttcatccttctaatatacaaagaactacgaaattgcaactgtttataatgtgaacactctgaccaatattttatatgtaaatgtctgtattactacaaaaaatttacaagcaccaactgtagtactatatatagtaactaatgttgaatagcatgcggagtacttgaaatcatagtaaaattgcataatagtgaagatatgataaacaataatgccttgtattgactgcaaagttggatggcacatttttaacataaactaacagaaaatatgtatcataatggtgacacaatagaaaacagaatagtttgatttatttcaaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactaattaattagattgaaaaatgaacatttataaaacacataataagtggctttggttttgaattgagacaagggagatttaaaatttcttcttc------TACAAGCACCAACTG------------TAGTAGCTAATGTTGAATATCA------------------------TAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATATCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATA-------------TATGTATCATAATGGTGACACAGTAGAAAACAGAGTAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AGTCGGTT-GA---AAAA-TGAACATTTATA--------A--AATGCA----TATTAAGT--GGC-TTTGCTTTTG-AATTGAGACAAGAAAGATT-TA-AAa
gi|3 : atatgtaaatgtctgtattactacaaaaaacCACATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGGGAG----TCATTT--T-C--CCTATT-TTCCTTTGAAATA----TA----TT-CTGAAT-----AAAACGCCACAGAAATG------GTATCACT-GAA----------GA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGC-A-----CAT--GT------T-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAACAATCTA-atttcttcttcttcggatacacattgctttttaaagatataagttctttaaatatggggggagtcattttccctattttcctttgaaatatattctgaataaaacgccacagaaatggtatcactgaagaagtttatgtttgatattggtttcaaaggcacatgtttttcagatgtagaatcacaagacaatatgtacaagtaaacaacaatctaa
gi|4 : atatgtaaatgtctgtattactacaaaaaactacaagcaccaactgtagtagctaatgttgaatatcatagtaaaattgcataatagtgaagatatgataaacaataatatcttgcattgactgcaaagttgcatggcacattcttaacatatatgtatcataatggtgacacagtagaaaacagagtagtttgatttatttccaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactagttaattaaattttatagagtcggttgaaaaatgaacatttataaaatgcatattaagtggctttgcttttgaattgagacaagaaagatttaaaatttcttcttcttcggataTAACTACAAATC-TTT----AA--CTACCAACGATATAAACATTCTTAACAAT-Ta
gi|4 : CTGCATG-CATGAATTA--CTGATGCG--TTGATTCCTG---TCTAAA-TTAAGAAAGAGTTTTCATG-A-ATTG-AA-TTACATAAACTTGTAAACACTTACTAAAA-CTCTG--T------AAGTA--AAAAAAGGC----AA-GGTTTCTTCC-TCT-TTAAA-----AAAAA-TATACATAAAACTACGAAG-TT-----------TAAA---A------CTG--------TTTATAATGTGAACATTC-G----AA--CAA------TAnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggaAACTACGAA-G-TTT----AAAACTGTTTATAATGTGAACATTC-GAACAATATTT---CATATGTTA-ATGTCGTATtttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAATTTTACAAGGAG-ATTTGCCCAGACTTC----TAAAAGCGTATCTTAG-------ATCATAATATGTTAATGTC-TGTATT-ACTACAAtactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|5 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaattta---AAAA-TGATCATTTATA--------CTTAATATA----TATT--GTGTAGC-TTTAGTCTTGAAA-TGAGCCAAAGCAGATTCTA-AAT
gi|5 : gttaaTATTGCTTTTTGAAGAAATAAGTTCTTTAAATATG----AAAACAATTATTT--T-CC-ATTATC-TTCCTCTTGGGTT----TA----TTGCTAAACCAATAGA--CAACACA-AAATG------GCATCACT-G-A----------CA----TTT----TCTACAGAACGT-AAT--TGT-TT--AAAGAA-A-----CAT--GT------A-GTTCAGATGTAGAATCACAAGACAATACGTACAAGCATAACAATTAACTA-GTAATATGAAGC---ATGTGTATCAAATATTTGGCAAATTATGTTTAATATTGTGTAC-AAAACT---TGTTTGATATTCGATTCATAATtgaaatttctccttatttgtattgctttttgaagaaataagttctttaaatatgaaaacaattattttccattatcttcctcttgggtttattgctaaaccaatagacaacacaaaatggcatcactgacattttctacagaacgtaattgtttaaagaaacatgtagttcagatgtagaatcacaagacaatacgtacaagcataacaattaactagtaatatgaagcatgtgtatcaaatatttggcaaattatgtttaatattgtgtacaaaacttgtttgatattcgattcataat
gi|6 : gttaaaaaatgatcatttatacttaatatatattgtgtagctttagtcttgaaatgagccaaagcagattctaaattgaaatttctccttatttgAATAACTACAAA-A-CTTCAGTGA--CTATTTACAATGTAAACATTCTTAACAAT-TATAGATATATGCTGCATG-CATATATT---CTGATGCACATTGAACCCCTGTCTCTAAAATGAAGAAAAGGTTTTCATGAA-ATCGAAA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AA-GGTTTCATCCTTCTCTTAAAAACAAAAAAA-TATACAAATAACTACGAAA-TTGC------------A---T------CTG--------TTTATAATGTGAACATTCTG----AC--GAA------TA
gi|7 : TATATCGCTAGTT--TTAAAATAGTTTAATAGTAAAAG-----T-GG---AAAAATAAACATTTATACTGAATATA--ACCACATGTGTATTGTGTG-GG--TTTGGTTTCAAAA-TGAGACAA--AACATT-TATAATtttcatatgtaaatgtctgtatcattaaatcaa
gi|7 : TTATATTGCTTTTTAAAGA---AA-------AAATAAAAAAAAAAAT--CCTTTT--TTC--ATTATT-TTCCTCTGGAATA----TA----TTATTGAACCAAT--AGACACCACAAAAATGGTACTAGTATCACT-GGAATCCTCTATGTA--AAGTAATTGTTT---GA---A-ATT--GGT-TAC-AAAAGT-G-----CAT--G-------A--TTCAGATttatccttatttatattgctttttaaagaaaaaataaaaaaaaaaatccttttttcattattttcctctggaatatattattgaaccaatagacaccacaaaaatggtactagtatcactggaatcctctatgtaaagtaattgtttgaaattggttacaaaagtgcatgattcagat
gi|8 : tatatcgctagttttaaaatagtttaatagtaaaagtggaaaaataaacatttatactgaatataaccacatgtgtattgtgtgggtttggtttcaaaatgagacaaaacatttataatttatccttatGGAAAAAT--TC-TTT--T-C--ACTATCATTCCTCTGAAATAATATTAATTTTT-ATGAACCAAATACAACGCCACAAAAATG------GTATCACTGGGA----------TAAGAGTGT--TGTTT---GA---TAATTCGGGTGTTCAAAAGATAA-----CATCAGT------AGTTTTTGATGTAG-ATCACAAGTCAATATATAC------AACAATAGAATAGGAAATTTGAGGT---ATGTGG-TAACATATTTTGCAA--TATGTATAAAACTGCGTAC-CAAACTA-AAATGT-GTACTTGATTCA
gi|9 : tgaaTTAAATATGGGGAAAAAT--TCATTT--T-CTCATTATT-TTCCTCTGAAATA----TT----TT-CTGAACCAAT-AAAACGCCACA-AAATG------GTATCACT-GGA----------TA--AGTTAT-TATTT---GA---T-A-----------------T-A-----CAT--GT------A-TTTTAGATGTAGAATCACAA
blockSeqs : AC CAGT AA A T ATT T G A A . TGAATTACATAAACTTGTAAAC C A A . A C A AACAAA T G AACTGTTTATAATGTGAACACTCTGACCAATAT T TATT TA AAAATT TAGTACTATATA T TGCG T CCCAGACTTC T T A T A C A ATAGTTTAATAGTAAAAGTGG A CTGAATATA TGTG AA GT . A T GGG C T T G G AA TC T TC A ATAT ATTT G A A T GTACTA G ATCCTCTATG AG AT ACA ACGT CG G A A A . CA AAATGT GT T G A . AT G
blockSeqs : TC . . . . A G C A . . CGAAATTATA C A A . . C A AACA . . GAACGCTGT C . . . CATG A CAAG . AAATCA T . A T A C A TTTTATAGAGTCGGTTGA . CTT . AA G . A T GAA . . T T G . . . C . . . A A A G . . . . A . TA . . . G . . . . T . . A . AT G
blockSeqs : G . . . . . G C A . . . . . . . . . A A . . TAAAACTG C . . . CATG A . . . . . G . . . . TTGA . A . GT . . . . AGC . . A T A . . . . . . . . A A G . . . . A . T . . . G . . . . T . . A . A G
blockSeqs : A . . . . . T T . . . . . . . . . . ATCTG . . . . . T . A . . . . . . A . . . . G . . . . . . . . T A A . . . . A . C . . . A . . . . T . . A . . .
blockSeqs : . . . A . . . . . . . . . . . . . . A . . . . T . T . . . G . . . . G . . A . . .
blockSeqs : . . . . . . . . . . . . . . . . . A . . . A . . . . T .
blockSeqs : . . . . . . . . . . . . . . . . . T . . . . . . . . .
blockSeqCons : N** AAANCTG*************************** CATG******** G* ***** A***
originalCons : NAATAACTACAAA-A-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGC---------T-AA---G------CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA--ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
finalCons : NAATAACTACAAAN--TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGCAAANCTG---------------------------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCATG--------TAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGTA---TGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Alignments
lowQualScore : 11 1111 11 111 666666666666666666666666 1 111111 9999999999999999999999999999999999 1111 11 111111 444444444444 1111 22222222222 1 444444444444444444444444444444 33333333333 1111 11 1 1 666666666666666666666666666666666666666666666666666666666666 11 1111 1111 1 111111 2222222222 11 11111 111111 111 11
lowQualScore : 77 7777 11 6 0 0 6 888 1 3 7 8 8 444444444444444444444444 2 3 3 0 0 8 8 0 0 0 1 888888 8 8 2222222222222222222222222222222222 0 3 0 0 7777 11 999999 0 666666666666 1 3333 9 0 88888888888 0 3 0 2 3 3 0 2 3 999999999999999999999999999999 8 55555555555 7777 44 88 8 0 0 666 8 8 000000000000000000000000000000000000000000000000000000000000 0 6 3 1 0 66 0 66 5 11 5 0000 0000 0 9 6 9 444444 5 1111111111 66 11 888 99999 0 66 5 5 1 5 22222 66 444444 55 6 5 111 6 00 2
lowQualScore : .. .... .. . . . . ... . . . . . ........................ . . . . . . . . . . . ...... . . .................................. . . . . .... .. ...... . ............ . .... . . ........... . . . . . . . . . .............................. . ........... .... .. .. . . . ... . . ............................................................ . . . . . .. . .. . .. . .... .... . . . . ...... . .......... .. .. ... ..... . .. . . . . ..... .. ...... .. . . ... . .. .
lowQualScore : 00 0000 00 7 8 8 7 333 0 7 3 0 0 555555555555555555555555 5 2 2 8 8 0 0 8 8 0 0 222222 0 0 6666666666666666666666666666666666 8 2 8 8 0000 00 222222 2 666666666666 4 5555 2 2 00000000000 8 2 0 0 2 2 2 5 2 888888888888888888888888888888 0 88888888888 0000 88 00 0 6 6 000 0 0 000000000000000000000000000000000000000000000000000000000000 8 0 8 0 4 99 4 99 0 99 0 6666 6666 0 5 2 6 444444 0 9999999999 99 55 888 99999 4 99 0 0 1 0 55555 99 444444 11 7 7 777 7 33 5
consensus : NAATAACTACAAAACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGCG---------------AA-N---CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
Reference ( family-2266 ) : NAATAACTACAAAN-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAAAAGGTTTTCATG-A-ATCG-AA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AA-GGTTTCATCCTTCTCTTAAAAAC--AAAAA-TATACAAAGAACTACGAAA-TTGCA---------------AA-N---CTG--------TTTATAATGTGAACATTCTG----AC--CAA------TACAAGCACCAACTGCA--------TGTAGTAACTAATGTTGAATATCACGCGGAGTACTTG---AGA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACGATAATGTCTTGTATTGACTGCAAAGTTGCATGGCACATTCTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----T-GG---AAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGC-TTTGGTTTTGAAATTGAGACAAGGGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTGCTTTTTAAAGATATAAGNTCTTTAAATATGGGGGAAAAT--TCATTT--T-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAACCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGT-A-----CAT--GT------A-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAGGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAAACTATATATTTGGTACTTGATTCATAATG
gi|1 : AATAACTACAAAA-TTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATT---GTGATGCACATTGAGCCCCAGTTTCTAAAATGAAGAAAAGGTTTTCATG-ATATTG-AAATTATA-------------ACTGACTAAAACCTCTGAATATGACAGAATGGCAAAGAAGACTCATAA-GGTTTCATCCTTCTCTTTAAAAC--TAAAA-TATACAAAGAACTACGAAA-TTGCT---------------A------TTG--------TTTATAATGTGAACATTCTT----AC--CAA------TATAAGCACCAACTG------------TAGTAACTGATGTTGAATATCATGCAGAGTACTTG---AGA--TCATAGTAAAATTGCATGATAGTGAAGATATGATAA-ACAATAATGTATTGTAATGACTGCAAAGTCGCATGGCACATTTTTAACATAAACTAACAGAAAATATGTGTCATAATGGTGACACAATGGAAAACAGAATAGTTTGATTTATTTCCAATCATAAAAGAATTACAAAACTATCTTAAGAAATCTTGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AG-----TCAGTTTAAAA-TGAACATTTATA--------A--AACACA----TATTAAGTG-GGCATTTGGTTTTGAAATTGAGACAAGAGAGATT-TA-AATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCATATTG-TTTTTAAAGATATAAGGTCTTTAAATATGGGGGGAAAT--TCATTT--T-C--ACTATT-TTTCTCTGAAATA----TA----TT-CTGAATCAATAAAAACGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGC-TTC-AAAGAT-ATCTGTCAT--GT------A-TTTCAGATGTAGAATCACAAGACAATGTGTACAAGTA-AACAATAGACTA-GAAATAC-ATGTACGATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTACAAAAACTATATATTTGGTACTTGATTCATAATG
gi|10 : aGAAGCAATAAAA-CACCAC-TAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AGAGAT-A-----CAT--GC------A-TTTCAGATGTAGAATCACAATACAATATGAACAAG
gi|11 : A-AACAATAGACTA-GAAATACGAGGT---ATGTGGATCACATATTTTGCAAAGTATGGATAAAACTGAGTAC-AAAACTATATATTTGGCACTTGATTCATAATG
gi|12 : GGCAA-GAAGACTCA-TA-GGTCTCA-CCTTCTCTTAAAAAC--AAAAATTATACAAAGAACTACGAAAGTTGCG---------------AACG---CTGT-------TTTATAATGTGAA-ATTCTG----AC--
gi|13 : AATGTAAACATTCTTAACAAT-TATAGACAT--GCTGCATG-CATACATT---CTGATGCACATTGATCCCCAGGTTCTAAAATGAAGAAAAGGTTTTCATG-A-A
gi|14 : CTA-TAAATACGAGGT---ATGTGGATCCAATATTTTATAAAGTATGTATAAAACTGACTAC-AAAACTATATATTTGGTACTTGATTCATAATGa
gi|15 : CATATTGCTATT-AAAGATATTAGGTATTTAAATATGGGGGAAAAT--TCATTTTCT-C--ACTATT-TTCCTCTGAAATA----TA----TT-CTGAA
gi|16 : ------TAAAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAAT
gi|17 : atatgttaatgtctgtattactacaaaaaaattTAAACTAACAAAAAATATGTAT------AGTGAAACAACAGAAAACAGAATAGTTTAAt
gi|18 : ATATATT---CTGATGCACATTGAGCCCCAGCTTCTAAAATGAAGAA
gi|19 : GTATGGACTGCAAAGTTGCATGGCACATTCTTAAC
gi|2 : AATAACTACAAAACTTT----GA--CTATCTACAATGTAAACATTCTTAACAAT-TATAGACATATGCTGCATG-CATATATTATTCTGATGAACATTGAGCCCCAGCTTCTAAA-TGAAAAAAAGGTTTTCATG-A-AT---------------------------GACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCA-AAAGGTTTCATCCTTCT--------------AA-TATACAAAGAACTACGAAA-TTGCAACTGTTTATAATGTGAA-CACTCTGACCAATATTTTATA-TGTAAATGT-CTGTATTACTACAAAAAATTTACAAGCACCAACTGTAGTACTATATATAGTAACTAATGTTGAATAGCATGCGGAGTACTTG---AAA--TCATAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATGCCTTGTATTGACTGCAAAGTTGGATGGCACATTTTTAACATAAACTAACAGAAAATATGTATCATAATGGTGACACAATAGAAAACAGAATAGTTTGATTTATTTCAAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAATTAATTAGA----T------------------T-GA---AAAA-TGAACATTTATA--------A--AACACA----TAATAAGT--GGC-TTTGGTTTTG-AATTGAGACAAGGGAGATT-TA-AA
gi|2 : --TCATTT--T-C--ATTATT-TTCCTCTGAAATA----TA----TT-CTAAACCAATAAAA-CGCCACAGAAATG------GTATCACT-GGA----------TA--AGTTTA-TGTTT---GA---C-ATT--GGT-TTC-AAAGGT-A-----CAT--GTAAATGTA-TTTCAGATGCAGAATCACAAGACAATATGTACAAGTA-AACAATAGACTA-GAAATACGAAGT---ATGTGGATCACATATTTTGCAAAGTATGTATAAAACTGAGTAC-AAA--------------ACTTGATTCATAATGatttcttcttctcattttcattattttcctctgaaatatattctaaaccaataaaacgccacagaaatggtatcactggataagtttatgtttgacattggtttcaaaggtacatgtaaatgtatttcagatgcagaatcacaagacaatatgtacaagtaaacaatagactagaaatacgaagtatgtggatcacatattttgcaaagtatgtataaaactgagtacaaaacttgattcataatga
gi|3 : aataactacaaaactttgactatctacaatgtaaacattcttaacaattatagacatatgctgcatgcatatattattctgatgaacattgagccccagcttctaaatgaaaaaaaggttttcatgaatgactaaaacctctgaatatgacaaaatggcaaagaagactcaaaaggtttcatccttctaatatacaaagaactacgaaattgcaactgtttataatgtgaacactctgaccaatattttatatgtaaatgtctgtattactacaaaaaatttacaagcaccaactgtagtactatatatagtaactaatgttgaatagcatgcggagtacttgaaatcatagtaaaattgcataatagtgaagatatgataaacaataatgccttgtattgactgcaaagttggatggcacatttttaacataaactaacagaaaatatgtatcataatggtgacacaatagaaaacagaatagtttgatttatttcaaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactaattaattagattgaaaaatgaacatttataaaacacataataagtggctttggttttgaattgagacaagggagatttaaaatttcttcttc------TACAAGCACCAACTG------------TAGTAGCTAATGTTGAATATCA------------------------TAGTAAAATTGCATAATAGTGAAGATATGATAA-ACAATAATATCTTGCATTGACTGCAAAGTTGCATGGCACATTCTTAACATA-------------TATGTATCATAATGGTGACACAGTAGAAAACAGAGTAGTTTGATTTATTTCCAATCATAAAAGAATTACAAGACTATCTTTAGAAGTCTGGCAATTCTCCATATATAGCACTAGTTAATTAAA----TTTTATAG----AGTCGGTT-GA---AAAA-TGAACATTTATA--------A--AATGCA----TATTAAGT--GGC-TTTGCTTTTG-AATTGAGACAAGAAAGATT-TA-AAa
gi|3 : atatgtaaatgtctgtattactacaaaaaacCACATTGCTTTTTAAAGATATAAGTTCTTTAAATATGGGGGGAG----TCATTT--T-C--CCTATT-TTCCTTTGAAATA----TA----TT-CTGAAT-----AAAACGCCACAGAAATG------GTATCACT-GAA----------GA--AGTTTA-TGTTT---GA---T-ATT--GGT-TTC-AAAGGC-A-----CAT--GT------T-TTTCAGATGTAGAATCACAAGACAATATGTACAAGTA-AACAACAATCTA-atttcttcttcttcggatacacattgctttttaaagatataagttctttaaatatggggggagtcattttccctattttcctttgaaatatattctgaataaaacgccacagaaatggtatcactgaagaagtttatgtttgatattggtttcaaaggcacatgtttttcagatgtagaatcacaagacaatatgtacaagtaaacaacaatctaa
gi|4 : atatgtaaatgtctgtattactacaaaaaactacaagcaccaactgtagtagctaatgttgaatatcatagtaaaattgcataatagtgaagatatgataaacaataatatcttgcattgactgcaaagttgcatggcacattcttaacatatatgtatcataatggtgacacagtagaaaacagagtagtttgatttatttccaatcataaaagaattacaagactatctttagaagtctggcaattctccatatatagcactagttaattaaattttatagagtcggttgaaaaatgaacatttataaaatgcatattaagtggctttgcttttgaattgagacaagaaagatttaaaatttcttcttcttcggataTAACTACAAATCTTT----AA--CTACCAACGATATAAACATTCTTAACAAT-Ta
gi|4 : CTGCATG-CATGAATTA--CTGATGCG--TTGATTCCTG---TCTAAA-TTAAGAAAGAGTTTTCATG-A-ATTG-AA-TTACATAAACTTGTAAACACTTACTAAAA-CTCTG--T------AAGTA--AAAAAAGGC----AA-GGTTTCTTCC-TCT-TTAAA-----AAAAA-TATACATAAAACTACGAAG-TT-TA---------------AA-A---CTG--------TTTATAATGTGAACATTC-G----AA--CAA------TAnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggaAACTACGAAG-TTT----AAAACTGTTTATAATGTGAACATTC-GAACAATATTT---CATATGTTA-ATGTCGTATtttcatatgttaatgtcgtattactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|4 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaAAGCATCAACTGCA--------TGTAGTAACTATTGTTCAATTTTACAAGGAG-ATTTGCCCAGACTTC----TAAAAGCGTATCTTAG-------ATCATAATATGTTAATGTC-TGTATT-ACTACAAtactacaaaaatttaaagcatcaactgcatgtagtaactattgttcaattttacaaggagatttgcccagacttctaaaagcgtatcttagatcataatatgttaatgtctgtattactacaa
gi|5 : taactacaaatctttaactaccaacgatataaacattcttaacaattnnnnnnnnnnnnnnnnnnnnnnnnncatattatatgtataactgtaaggactgcatgcatgaattactgatgcgttgattcctgtctaaattaagaaagagttttcatgaattgaattacataaacttgtaaacacttactaaaactctgtaagtaaaaaaaggcaaggtttcttcctctttaaaaaaaatatacataaaactacgaagtttaaaactgtttataatgtgaacattcgaacaatatttcatatgttaatgtcgtattactacaaaaattta---AAAA-TGATCATTTATA--------CTTAATATA----TATT--GTGTAGC-TTTAGTCTTGAAA-TGAGCCAAAGCAGATTCTA-AAT
gi|5 : gttaaTATTGCTTTTTGAAGAAATAAGTTCTTTAAATATG----AAAACAATTATTT--T-CC-ATTATC-TTCCTCTTGGGTT----TA----TTGCTAAACCAATAGA--CAACACA-AAATG------GCATCACT-G-A----------CA----TTT----TCTACAGAACGT-AAT--TGT-TT--AAAGAA-A-----CAT--GT------A-GTTCAGATGTAGAATCACAAGACAATACGTACAAGCATAACAATTAACTA-GTAATATGAAGC---ATGTGTATCAAATATTTGGCAAATTATGTTTAATATTGTGTAC-AAAACT---TGTTTGATATTCGATTCATAATtgaaatttctccttatttgtattgctttttgaagaaataagttctttaaatatgaaaacaattattttccattatcttcctcttgggtttattgctaaaccaatagacaacacaaaatggcatcactgacattttctacagaacgtaattgtttaaagaaacatgtagttcagatgtagaatcacaagacaatacgtacaagcataacaattaactagtaatatgaagcatgtgtatcaaatatttggcaaattatgtttaatattgtgtacaaaacttgtttgatattcgattcataat
gi|6 : gttaaaaaatgatcatttatacttaatatatattgtgtagctttagtcttgaaatgagccaaagcagattctaaattgaaatttctccttatttgAATAACTACAAAA-CTTCAGTGA--CTATTTACAATGTAAACATTCTTAACAAT-TATAGATATATGCTGCATG-CATATATT---CTGATGCACATTGAACCCCTGTCTCTAAAATGAAGAAAAGGTTTTCATGAA-ATCGAAA-TTATA-------------ACTGACTAAAACCTCTGAATATGACAAAATGGCAAAGAAGACTCG-AA-GGTTTCATCCTTCTCTTAAAAACAAAAAAA-TATACAAATAACTACGAAA-TTGC-----------------A-T---CTG--------TTTATAATGTGAACATTCTG----AC--GAA------TA
gi|7 : TATATCGCTAGTT--TTAAAATAGTTTAATAGTAAAAG-----T-GG---AAAAATAAACATTTATACTGAATATA--ACCACATGTGTATTGTGTG-GG--TTTGGTTTCAAAA-TGAGACAA--AACATT-TATAATtttcatatgtaaatgtctgtatcattaaatcaa
gi|7 : TTATATTGCTTTTTAAAGA---AA-------AAATAAAAAAAAAAAT--CCTTTT--TTC--ATTATT-TTCCTCTGGAATA----TA----TTATTGAACCAAT--AGACACCACAAAAATGGTACTAGTATCACT-GGAATCCTCTATGTA--AAGTAATTGTTT---GA---A-ATT--GGT-TAC-AAAAGT-G-----CAT--G-------A--TTCAGATttatccttatttatattgctttttaaagaaaaaataaaaaaaaaaatccttttttcattattttcctctggaatatattattgaaccaatagacaccacaaaaatggtactagtatcactggaatcctctatgtaaagtaattgtttgaaattggttacaaaagtgcatgattcagat
gi|8 : tatatcgctagttttaaaatagtttaatagtaaaagtggaaaaataaacatttatactgaatataaccacatgtgtattgtgtgggtttggtttcaaaatgagacaaaacatttataatttatccttatGGAAAAAT--TC-TTT--T-C--ACTATCATTCCTCTGAAATAATATTAATTTTT-ATGAACCAAATACAACGCCACAAAAATG------GTATCACTGGGA----------TAAGAGTGT--TGTTT---GA---TAATTCGGGTGTTCAAAAGATAA-----CATCAGT------AGTTTTTGATGTAG-ATCACAAGTCAATATATAC------AACAATAGAATAGGAAATTTGAGGT---ATGTGG-TAACATATTTTGCAA--TATGTATAAAACTGCGTAC-CAAACTA-AAATGT-GTACTTGATTCA
gi|9 : tgaaTTAAATATGGGGAAAAAT--TCATTT--T-CTCATTATT-TTCCTCTGAAATA----TT----TT-CTGAACCAAT-AAAACGCCACA-AAATG------GTATCACT-GGA----------TA--AGTTAT-TATTT---GA---T-A-----------------T-A-----CAT--GT------A-TTTTAGATGTAGAATCACAA