lowQualScore : 1111111111111111111111111111111111111111111111111111
lowQualScore : 1 888888888888888888888888888 4 4 1 4 11 1 44 11 3 22 5555 0000000000000000000000000000000000000000000000000000 11 222 1 1 11 2222 33 222222 4444 1 77777777777777777 2 33 11 1111 33333 1 1 2222222 111 111 1 1 333 2 44444 2 4 1 1 33 1 11 22222222 11 11 2222 555555555555 11 11 1 222 3333 1 33333333333 111 111 222222 222 22222
lowQualScore : 7 666666666666666666666666666 6 0 0 5 0 22 5 44 8 11 3 11 1111 8 5 1111111111111111111111111111111111111111111111111111 3 6 33 3 222 0 9 6 8 8 88 8 2 0000 22 3 111111 7 6 1111 3 11111111111111111 1 3 11 8 2 77 9999 44444 0 0 55 6 7777777 777 555 3 0 5 222 6 33333 3 0 3 3 11 3 88 44444444 4 33 33 3333 8 555555555555 8 8 11 8 11 5 111 7777 0 2 2 55555555555 99 111 999 444444 999 111 2 33333 6 7 2
lowQualScore : . ........................... . . . . . .. . .. . .. . .. .... . . .................................................... . . .. . ... . . . . . .. . . .... .. . ...... . . .... . ................. . . .. . . .. .... ..... . . .. . ....... ... ... . . . ... . ..... . . . . .. . .. ........ . .. .. .... . ............ . . .. . .. . ... .... . . . ........... .. ... ... ...... ... ... . ..... . . .
lowQualScore : 0 000000000000000000000000000 0 0 0 0 0 00 0 00 0 00 2 00 0000 0 0 0000000000000000000000000000000000000000000000000000 2 7 88 8 000 6 0 0 0 0 00 0 5 2222 22 2 333333 3 0 3333 3 00000000000000000 0 3 00 8 5 55 8888 55555 0 0 55 5 0000000 555 888 0 0 0 555 7 00000 3 0 3 3 33 3 33 77777777 0 88 88 2222 0 000000000000 0 0 00 0 00 0 555 0000 0 5 5 11111111111 22 777 222 888888 333 777 5 33333 7 8 2
consensus : GTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGGTCAG-TTACATGG------ATT------CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTTTGCTTTAAAATGATT-G-AT-CCA-GAGNGCGCTTA-AACAAGACAGCGAAACAGACTTCCTA-G-TGAAAAATACTTGC-GCAG-TGG-AC-G-A-TTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--T-GAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGNTTG-GAGGTTTA-GTACTTTTAAGAGTGACCCCCATT--T-AATCGCTGG-TTATTACGTGAACG-CAGTTAGAT-CTAGAAAAA-TGTTGTCCC-AAAA--ACTTGCGATTATATC-TGTG-C-ACAGAAANCAG--GCTTGAA--TCATGGTGGGT-ATATTTCCAA-AAGCATTGTAGC-----CG-AATAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAGATGAAGACAAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATNTTTCAATTNTGCTTTATGTTCAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTA-TTA-TCATATCCAAG-GTTTTTNAAACT
Reference ( gi|1 ) : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAA-CACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAG-TTACATGGG-----ATT------CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAATGA-T-G-AT-GCA-GAGGGCGCTTC-ATCAAGACAG-AAAACAGACTTCCTA-G-TGAAAAATATTGGTTGCAG-TGG-ACAGGATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--T-GAAGCCAATAATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTA-ATACTTTTAAGAGTGACCCC-ATTGTT-TATTGCTGGGTTATTACGTGA-CG-CAGTTAGAT-CTAGAAAAATTGTTGTCCC-AAAA--ACTTGCGATTATATC-TGTG-C-ACAGAAAACAG--GCTTGAA--TCATGGTGA-T-ATATTTCCAA-AAGCATTGTA-C-----C--A-TAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAACTGAAGACAAGTTTTTAAACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|8 : GTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|7 : cataTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAG-TTAGATGG------ATT------CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAATGG-TTG-AT-CCA-GAGTGCGCTTA-AACAAGACAGCGAAACAGACTTCCTA-GGTGAAAA-TACTTGT-GCAG-TGG-ACCAGAATTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGAC-TCGTGTAAAAAA--TTGAGGCCA-TA-TGTATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---AGA---GAAAAATCA-TATGGTTG-GAGGTTTA--TACTTCTAACAGTGACCCCCATT--T-AATCGCTAG-TTACTACGTGAACG-CAGTTAGAT-CTAGAAAAA--GTTGTCCC-AAAA--AGTTGCGATTATATC--GTGGC-ACAGAAAGCAGAGGCTTGAA--TCATGGTGGGT-ATATTTCCAA-AAGCATTGTA-CATAGCCG-A-TAC-TGGA-TGAAT--ATCTTT-CATAC--ACTACGAGATGAAGA-AAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTAtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
gi|6 : aatattctTGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAG-TTACATGG------ATT------CTTGAAGT-------------T--T------------T--GT-TGTGAATCAGGAGA
gi|8 : atagtctTGATGTGGCTATGTTTA-TAAT--GGA-ACAAGTGGAAACATCAGGACAG-TTACATGGATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTG-TTCGATTG-TTGCTTCAAATTAT-T-G-AT-CCA-GAGGGCGTTCA-AAAAAGACAGCGAAACATATTTCnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|13 : catagtatggacggcgtggaagcatttgatgtgcttgtagagttttatttcaagttaggatttaaccacaaagaaattttgcatttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattctATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAG-TTACGTGG------ATT------CT-AAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTG-TTGC-TTAAAATGATT-G-AT-CCA-GAGaga
gi|2 : gttattcgaatattcttcT--GCATAATGATTGGGAC-CAAGTGGAAAAATC----CAGCTTA-ATGG------ATT------CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTTAAAAATGA-T-GGATCGAATGAGGGCGCTTCGATCCAGACAG-AAA-CAGACTTCCTA-G-GTAAAAATACTTGT-GCAGGTGGGACAG-ATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--T-GAAGCTCATAATGGATTGTTGCATAGTACGA-T-TATAGATGGTTT--TCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTATGTACTTTTAAGAGTGACCCC-ATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAATGTTGTCCCCAAAAGGACTTGCGATTATATC-TGTG-CCACAGAAACCAG--GCTTGAAGATCATGGTGG-T-ATATTTCCAAGAAGCATTGTA-C-----C--AATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGACA-GTTTTTAA-CTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-GTATAATGGGAATCAAAG-AGATACTACTTAGTCATATCCAAG-GTTTTTTAAACTt
gi|11 : actaT------CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTA-TTCGACTG-TTGC-TTAAAATGATT-G-AT-CCA-GAGTGCGCATA-AACAAGACAGTGAAACAGACTTCCTAGG-TG-CAAATACT-TCTGCAG-TGG-----------------AGTGGATCAGATTTT-ATATCAAACGTAGA-CTCGTGTAAACAA----GAGGCCggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|15 : attctgaagtgtaTTTTA-TATGAAAC-TAGAC-TCGTGTAAAAAAATT-GAAGCC-AT-ATGGATT-TTACATAA-ACGGATAAATAGATGGT---TTCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTT--ATACTTTTAcacaggctttaac
gi|6 : --T-GAAGCCA-TA-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---CGA---GAAAAATAA-TATGTTTG-GAGGCTTA--TACTTTTAAGAGTGACCCCCATT--T-AATTGCTGG-TTATTACGTGAACG-CATTTAGAT-CTAGAAAA--TGTTGTCCC-AAAA--ACTTGCGATTATATCGTG-G-C-ACAGAAAACAG--GCTTGAA--TCATGGTGAGT-ATATTTCCAA-AAGCATTGTAGC-----CA-A-TAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAAATGAAGA-AAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-GTAT-AT-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-G-TTTTTAAA
gi|10 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnAG--GATTGAA--TCATGGTGG-TGATTTTTCCGA-AAGCACTGCAGC-----C--AACAC-TGGA-TGAAT--ACCTTT-GAAAC--ACTACGAGATGAAGGCA-GTTTC--ACCTGTGACTTTGTAG-ACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TACGATATAAA-AAAATCAA---------TAGTTACCCATG-CCAAGAAATTTTCAAATT
gi|19 : tgtgttatatttggatctagcagtcataaccagTCCAA-AAGCATTGCA-G-----CGAA-TAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACG
gi|4 : CGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTAC-ATG-TATA-T-GGAATCAAAGAA-ACGCTA--TA-TCATATCTATA-GATTTTAAAACT
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|3 : AAAAGTTTAC-ATG-TATA-T-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAACTggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
8 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT
Alignments
lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2 22 2 1 1 1 1 1 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 2222 2222222222222 888888888888888888888888888888 1 2 1 1 1 1111 11 1 555555555555555555 1 11 11111 222 111 1 33 1 22 1 2 1 1 11 1 2 1 11 11 1 1111 22 1 11 11 222 111 111 11 11 2 33333
lowQualScore : 4 0 77 0 3 5 5 5 5 2 5 3 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 6 99 6 7777 6 2 6 3333333333333 1 666666666666666666666666666666 5 1 8 3 4 3 99 1 0 8 3 0 2222 3 66 0 777777777777777777 8 8 0 0 55 88888 8 8 3 666 0 444 0 0 1 8 11 5 77 0 2 0 3 0 0 8 999 8 11 5 0 0 1 11 11 0 6 4444 6 66 6 6 99 6 99 0 3 11 8 1 1 0 77 444 77 000 555 88 00 5 5 6 0 77777 1
lowQualScore : . . .. . . . . . . . . . ......................................................................................................... . .. . .... . . . ............. . .............................. . . . . . . .. . . . . . .... . .. . .................. . . . . .. ..... . . . ... . ... . . . . .. . .. . . . . . . . ... . .. . . . . .. .. . . .... . .. . . .. . .. . . .. . . . . .. ... .. ... ... .. .. . . . . ..... .
lowQualScore : 0 0 55 0 0 5 0 0 0 5 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 7 8888 7 5 7 9999999999999 7 000000000000000000000000000000 7 0 0 7 2 2 22 0 6 0 2 0 5555 2 00 0 888888888888888888 8 0 6 0 88 66666 0 0 2 000 8 000 6 8 0 0 22 0 55 0 0 0 2 0 0 0 666 0 00 5 0 0 0 00 00 0 7 2222 7 55 7 7 22 7 22 0 8 00 0 0 0 8 00 777 99 000 111 00 99 0 7 7 0 55555 0
consensus : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAG-TTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAATGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTA-G-TGAAAAATACTTGT-GCAG-TGG-ACAG-GATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA-TGTTGT-CCCAAAA--ACTTGCGATTATATCTGTGG-CACAGAAAAC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCC-AATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAGGTTTTTNAAACT
Reference ( family-2239 ) : GTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGGTCAG-TTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTTTGCTTTAAAATGATTGATCCA--GAGNGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTA-G-TGAAAAATACTTGC-GCAG-TGG-AC---GATTT-GGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGNTTG-GAGGTTTA-GTACTTTTAAGAGTGACCCCCAT--TTA-ATCGCT-GGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA-TGTTGT-CCCAAAA--ACTTGCGATTATATCTGT-G-CACAGAAANC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCGAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAGATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATNTTTCAATTNTGCTTTATGTTCAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTA-TTA-TCATATCCAAGGTTTTTNAAACT
gi|1 : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAAC-ACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAG-TTACATGGGAT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAATGAT-GATGCA--GAGGGCGCTTCAT-CAAGACAG-AAAACAGACTTCCTA-G-TGAAAAATATTGGTTGCAG-TGG-ACAG-GATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTA-ATACTTTTAAGAGTGA-CCCCATTGTTT-ATTGCTGGGTTATTACGTG-AC-GCAGTTAGAT-CTAGAA-AAATTGTTGT-CCCAAAA--ACTTGCGATTATATCTGT-G-CACAGAAAAC--AGGCTTGA--ATCATGGT-GATATATTTCCAA-AAGCATTG----TA-CC--ATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAACTGAAGACAAGTTTTTAAACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAGGTTTTTTAAACT
gi|10 : --AGGATTGA--ATCATGGTGGTGATTTTTCCGA-AAGCACTG----CAGCC-AACAC-TGG-ATGAAT--ACC-TTTGAAAC--ACTACGAGATGAAGGCA-GTTTC--ACCTGTGACTTTGTA-GACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TACGATATAAA-AAAATCAA
gi|11 : tgtgttatatttggatctagcagtcataaccag---------T---CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTATT-CGACTGTT-GCTT-AAAATGATTGATCCA--GAGTGCGCATAAA-CAAGACAGTGAAACAGACTTCCTA-GGTGCAAA-TACTTCT-GCAG-TGG-A-----------------GTGGATCAGATTTTA-TATCAAACGTAGA-CTCGTGTAAACAA---GAGGCCtagttacccatgccaagaaattttcaaatt
gi|13 : attctgaagtgtaATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAG-TTACGTGG-AT---------T---C-TAAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTG-TTGC-TTAAAATGATTGATCCA--GAGcacaggctttaac
gi|15 : gttattcgaatattcttcTTTTA-TATGAAAC-TAGAC-TCGTGTAAAAAAATTGAAGCC-AT-ATGGATT-TTACATAA-ACGGATAAATAGATGGT---TTCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTTA--TACTTTTAt
gi|19 : TCCAA-AAGCATTG----CAGC-GAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACG
gi|2 : CTATGCATAATGATTGGGAC-CAAGTGGAAAAATC----CAGCTTA-ATGG-AT---------T---CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTTAAAAATGATGGATCGAATGAGGGCGCTTCGATCCAGACAG--AAACAGACTTCCTA-G-GTAAAAATACTTGT-GCAGGTGGGACA--GATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCTCATAATGGATTGTTGCATAGTAC-GAT-TATAGATGGTT--TTCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTATGTACTTTTAAGAGTGA-CCCCATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAA-TGTTGTCCCCAAAAGGACTTGCGATTATATCTGT-GCCACAGAAACC--AGGCTTGAAGATCATGGT-GGTATATTTCCAAGAAGCATTG----TA-CC-AATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGACAGTTTTT--AACTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-GTATAATGGGAATCAAAG-AGATACTACTTAGTCATATCCAAGGTTTTTTAAACT
gi|3 : aAAAAGTTTAC-ATG-TATA-T-GGAATCAAAG-ATACACTA--TA-TCATATCCAAGGTTTTTAAAACTggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|3 : AGAA-AAA-TGTTGT--CTAAAA--TCTTGCggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttggcaagattttagacaacatttttctttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|4 : aaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaaactggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttgCGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTAC-ATG-TATA-T-GGAATCAAAGAA-ACGCTA--TA-TCATATCTATAGATTTTAAAACTttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAGGTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|6 : TGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAG-TTACATGG-AT---------T---CTTGAAG-----------------T------------TTTGT-TGTGAATCAGGAGAggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
gi|6 : atagtct--TGAAGCCA-TA-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---CGA---GAAAAATAA-TATGTTTG-GAGGCTTA--TACTTTTAAGAGTGACCCCCAT--TTA-ATTGCT-GGTTATTACGTGAAC-GCATTTAGAT-CTAGAA-AA--TGTTGT-CCCAAAA--ACTTGCGATTATATC-GTGG-CACAGAAAAC--AGGCTTGA--ATCATGGTGAGTATATTTCCAA-AAGCATTG----TAGCC-AATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-GTAT-AT-GGAATCAAAG-ATACACTA--TA-TCATATCCAAGGTTTTTAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|7 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAG-TTAGATGG-AT---------T---CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAATGGTTGATCCA--GAGTGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGG-TG-AAAATACTTGT-GCAG-TGG-ACCAGAATTT-GGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGA-CTCGTGTAAAAAAT-TGAGGCC-AT-ATGTATT-TTGCATAG-ACGGATGTATAGATGGT---TTCTAGA---GAAAAAT-CATATGGTTG-GAGGTTTA--TACTTCTAACAGTGACCCCCAT--TTA-ATCGCT-AGTTACTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA--GTTGT-CCCAAAA--AGTTGCGATTATATC-GTGG-CACAGAAAGCAGAGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTGTACATAGCCG-ATAC-TGG-ATGAAT--ATC-TTTCATAC--ACTACGAGATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTA
gi|8 : aatattctGTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|8 : cataTGATGTGGCTATGTTTA-TAAT--GGAA-CAAGTGGAAACATCAGGACAG-TTACATGG-ATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTGTT-CGATTGTT-GCTTCAAA-TTATTGATCCA--GAGGGCGTTCAAA-AAAGACAGCGAAACATATTTCtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT
Alignments
lowQualScore : 1 11 1 1 1 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333 2222222222222 888888888888888888888888888888 1 1 2 1 1 1 22222222 11 1 11 11111 222 111 1 11 1 11 1 1 1 11 111111 11 11111 11 1 1111 11 11 11 222 111 111 11 11 111 11 1
lowQualScore : 1 5 77 5 1 5 5 5 5 1 5 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 99 6 0000 2 6 3333333333333 1 666666666666666666666666666666 5 1 8 6 6 6 3 99 0 8 3 0 5 0 0 22222222 0 00 8 8 0 0 55 88888 8 8 3 3 111 0 444 0 0 0 8 8 11 5 22 0 2 2 3 0 0 8 999 8 11 777777 5 11 22222 11 5 6 4444 6 6 6 99 6 99 00 11 8 0 44 444 77 000 555 88 00 5 5 777 0 66 5 5 1
lowQualScore : . . .. . . . . . . . . . ................................................................................................ . .. . .... . . ............. . .............................. . . . . . . . .. . . . . . . . ........ . .. . . . . .. ..... . . . . ... . ... . . . . . .. . .. . . . . . . . ... . .. ...... . .. ..... .. . . .... . . . .. . .. .. .. . . .. ... .. ... ... .. .. . . ... . .. . . .
lowQualScore : 0 0 55 5 0 5 0 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 7 7777 5 7 9999999999999 7 000000000000000000000000000000 7 0 0 7 7 7 2 22 6 0 2 0 5 0 0 00000000 8 22 8 0 6 0 88 66666 0 0 2 2 222 8 000 6 8 6 0 0 00 0 00 0 5 5 2 0 0 0 666 0 00 666666 0 00 88888 00 0 7 2222 7 7 7 22 7 22 88 00 0 8 22 777 99 000 111 00 99 0 7 333 4 33 0 7 0
consensus : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCAG-TGG-ACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA-T--ACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAACG-CAGTTAGAT-CTAGAA-AAAT-GTTGTCCC-AAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGAA--TCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
Reference ( family-2239 ) : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTA-GTGAAAAATACTTGT-GCAG-TGG-ACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA-T--ACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAACG-CAGTTAGAT-CTAGAA-AAAT-GTTGTCCC-AAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGAA--TCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
gi|1 : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAAC-ACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAGTTACATGGGAT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAA-TGAT-GATGCA--GAGGGCGCTTCAT-CAAGACAG-AAAACAGACTTCCTA-GTGAAAAATATTGGTTGCAG-TGG-ACAGGATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTAAT--ACTTTTAAGAGTGACCCC-ATTGTTT-ATTGCTGGGTTATTACGTGA-CG-CAGTTAGAT-CTAGAA-AAATTGTTGTCCC-AAAA--ACTTGCGATTATATCTG----TG-CA--CAGAAA-AC--AGGCTTGAA--TCATGGTGA-TATATTTCCAA-AAGCATTG----TA-CCA-TAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAACTGAAGACAAGTTTTTAAACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|10 : TTATATTTGGATCTAGCAGTCATAACCAG--AGGATTGAA--TCATGGTGGTGATTTTTCCGA-AAGCACTG----CAGCCAACAC-TGGA-TGAAT--ACCTTT-GAAAC--ACTACGAGATGAAGGC-AGTTTC--ACCTGTGACTTTGTAG-ACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TACGATATAAA-AAAATCAA---------TAGTTACCCATG-CCAAGAAATTTTCAAATT
gi|11 : tgtg---------T---CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTATT-CGACTGTT-GCTT-AAAA-TGATTGATCCA--GAGTGCGCATAAA-CAAGACAGTGAAACAGACTTCCTAGGTG-CAAATACTTCT-GCAG-TGG-----------------AGTGGATCAGATTTTA-TATCAAACGTAGA-CTCGTGTAAACAA---GAGGCC
gi|13 : attctgaagtgtaATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAGTTACGTGG-AT---------T---C-TAAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTGTT-GCTT-AAAA-TGATTGATCCA--GAGcacaggctttaac
gi|15 : gttattcgaatattcttcTTTTA-TATGAAAC-TAGAC-TCGTGTAAAAAAATTGAAGCC-AT-ATGGATT-TTACATAA-ACGGATAAATAGATGGT---TTCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTTA-T--ACTTTTAt
gi|19 : TCCAA-AAGCATTG----CAGCGAATAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACG
gi|2 : CTATGCATAATGATTGGGAC-CAAGTGGAAAAATCCAG-C--TTA-ATGG-AT---------T---CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTT-AAAAATGATGGATCGAATGAGGGCGCTTCGATCCAGACAG--AAACAGACTTCCTA-GGTAAAAATACTTGT-GCAGGTGGGACAG-ATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCTCATAATGGATTGTTGCATAGTACG-AT-TATAGATGGTTT--TCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTA-TGTACTTTTAAGAGTGACCCC-ATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAAT-GTTGTCCCCAAAAGGACTTGCGATTATATCTG----TGCCA--CAGAAA-CC--AGGCTTGAAGATCATGGTGG-TATATTTCCAAGAAGCATTG----TA-CCAATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGACAGTTTTT--AACTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-GTATAATGGGAATCAAAG-AGATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|3 : aAAAAGTTTAC-ATG-TATA-T-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAACTggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|3 : AGAA-AAAT-GTTGT-CT-AAAA--TCTTGCggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttggcaagattttagacaacatttttctttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|4 : aaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaaactggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttgCGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTAC-ATG-TATA-T-GGAATCAAAGAA-ACGCTA--TA-TCATATCTATA-GATTTTAAAACTttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|6 : TGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAGTTACATGG-AT---------T---CTTGAAG-----------------T------------TTTGT-TGTGAATCAGGAGAggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
gi|6 : atagtct--TGAAGCCA-TA-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---CGA---GAAAAATAA-TATGTTTG-GAGGCTTA-T--ACTTTTAAGAGTGACCCCCATT--TA-ATTGCTGG-TTATTACGTGAACG-CATTTAGAT-CTAGAA-AA-T-GTTGTCCC-AAAA--ACTTGCGATTATATC-G----TGGCA--CAGAAA-AC--AGGCTTGAA--TCATGGTGAGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGGA-TGAAT--ATCTTT-CAAAC--ACTACGAAATGAAGA-AAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-GTAT-AT-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|7 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAGTTAGATGG-AT---------T---CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAA-TGGTTGATCCA--GAGTGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTG-AAAATACTTGT-GCAG-TGG-ACCAGAATTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGA-CTCGTGTAAAAAAT-TGAGGCC-AT-ATGTATT-TTGCATAG-ACGGATGTATAGATGGT---TTCTAGA---GAAAAAT-CATATGGTTG-GAGGTTTA-T--ACTTCTAACAGTGACCCCCAT--TTA-ATCGCT-AGTTACTACGTGAACG-CAGTTAGAT-CTAGAA-AAA--GTTGTCCC-AAAA--AGTTGCGATTATATC-G----TGGCA--CAGAAA-GCAGAGGCTTGAA--TCATGGTGGGTATATTTCCAA-AAGCATTGTACATAGCCGATAC-TGGA-TGAAT--ATCTTT-CATAC--ACTACGAGATGAAGA-AAGTTTT--AACTGTGACTTTGTAG-ACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTA
gi|8 : aatattctGTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|8 : cataTGATGTGGCTATGTTTA-TAAT--GGAA-CAAGTGGAAACATCAGGACAGTTACATGG-ATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTGTT-CGATTGTT-GCTT-CAAA-TTATTGATCCA--GAGGGCGTTCAAA-AAAGACAGCGAAACATATTTCtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT
Alignments
lowQualScore : 1 11 1 1 1 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333 2222222222222 888888888888888888888888888888 1 1 11 1 1 1 11 11 1 11 11111 222 111 1 11 11 1 1 1 11 111111 11 11111 11 1111 11 11 11 222 111 111 11 11 111 11 1
lowQualScore : 1 5 77 5 1 5 5 5 5 1 5 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 99 6 0000 2 6 3333333333333 1 666666666666666666666666666666 5 1 8 6 6 6 3 99 0 8 3 2 88 0 0 0 3 55 3 0 00 8 8 0 0 55 88888 8 8 3 666 0 444 0 0 0 8 99 2 2 22 0 2 2 3 0 0 8 999 8 11 777777 5 11 22222 11 5 6 4444 6 6 6 99 6 99 00 11 8 0 44 444 77 000 555 88 00 5 5 777 0 66 5 5 1
lowQualScore : . . .. . . . . . . . . . ................................................................................................ . .. . .... . . ............. . .............................. . . . . . . . .. . . . . .. . . . . .. . . .. . . . . .. ..... . . . ... . ... . . . . .. . . .. . . . . . . . ... . .. ...... . .. ..... .. . . .... . . . .. . .. .. .. . . .. ... .. ... ... .. .. . . ... . .. . . .
lowQualScore : 0 0 55 5 0 5 0 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 7 7777 5 7 9999999999999 7 000000000000000000000000000000 7 0 0 7 7 7 2 22 6 0 2 5 00 0 0 0 2 88 5 8 22 8 0 6 0 88 66666 0 0 2 000 8 000 6 8 6 0 00 5 5 00 0 5 5 2 0 0 0 666 0 00 666666 0 00 88888 00 0 7 2222 7 7 7 22 7 22 88 00 0 8 22 777 99 000 111 00 99 0 7 333 4 33 0 7 0
consensus : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
Reference ( family-2239 ) : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
gi|1 : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAAC-ACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAGTTACATGGGAT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAA-TGAT-GATGCA--GAGGGCGCTTCAT-CAAGACAG-AAAACAGACTTCCTAG-TGAAAAATATTGGTTGCA-GT-GGACAGGATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTAA-TACTTTTAAGAGTGACCCC-ATTGTTT-ATTGCTGGGTTATTACGTGA-C-GCAGTTAGAT-CTAGAA-AAATTGTTGT-CCCAAAA--ACTTGCGATTATATCTG----TG-CA--CAGAAA-AC--AGGCTTGA--ATCATGGTGA-TATATTTCCAA-AAGCATTG----TA-CCA-TAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAACTGAAGACAAGTTTTTAAACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|10 : TTATATTTGGATCTAGCAGTCATAACCAG--AGGATTGA--ATCATGGTGGTGATTTTTCCGA-AAGCACTG----CAGCCAACAC-TGG-ATGAAT--ACC-TTTGAAAC--ACTACGAGATGAAGGC-AGTTTC--ACCTGTGACTTTGTA-GACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TACGATATAAA-AAAATCAA---------TAGTTACCCATG-CCAAGAAATTTTCAAATT
gi|11 : tgtg---------T---CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTATT-CGACTGTT-GCTT-AAAA-TGATTGATCCA--GAGTGCGCATAAA-CAAGACAGTGAAACAGACTTCCTAGGTG-CAAATACTTCT-GCA-GT-GG----------------AGTGGATCAGATTTTA-TATCAAACGTAGA-CTCGTGTAAACAA---GAGGCC
gi|13 : attctgaagtgtaATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAGTTACGTGG-AT---------T---C-TAAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTGTT-GCTT-AAAA-TGATTGATCCA--GAGcacaggctttaac
gi|15 : gttattcgaatattcttcTTTTA-TATGAAAC-TAGAC-TCGTGTAAAAAAATTGAAGCC-AT-ATGGATT-TTACATAA-ACGGATAAATAGATGGT---TTCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTTA--TACTTTTAt
gi|19 : TCCAA-AAGCATTG----CAGCGAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACG
gi|2 : CTATGCATAATGATTGGGAC-CAAGTGGAAAAATCCAG-C--TTA-ATGG-AT---------T---CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTT-AAAAATGATGGATCGAATGAGGGCGCTTCGATCCAGACAG--AAACAGACTTCCTAGGT-AAAAATACTTGT-GCAGGTGGGACA-GATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCTCATAATGGATTGTTGCATAGTAC-GAT-TATAGATGGTT--TTCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTATGTACTTTTAAGAGTGA-CCCCATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAAT-GTTGTCCCCAAAAGGACTTGCGATTATATCTG----TGCCA--CAGAAA-CC--AGGCTTGAAGATCATGGT-GGTATATTTCCAAGAAGCATTG----TA-CCAATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGACAGTTTTT--AACTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-GTATAATGGGAATCAAAG-AGATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|3 : aAAAAGTTTAC-ATG-TATA-T-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAACTggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|3 : AGAA-AAAT-GTTGT--CTAAAA--TCTTGCggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttggcaagattttagacaacatttttctttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|4 : aaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaaactggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttgCGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTAC-ATG-TATA-T-GGAATCAAAGAA-ACGCTA--TA-TCATATCTATA-GATTTTAAAACTttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|6 : TGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAGTTACATGG-AT---------T---CTTGAAG-----------------T------------TTTGT-TGTGAATCAGGAGAggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
gi|6 : atagtct--TGAAGCCA-TA-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---CGA---GAAAAATAA-TATGTTTG-GAGGCTTA--TACTTTTAAGAGTGACCCCCATT--TA-ATTGCTGG-TTATTACGTGAAC-GCATTTAGAT-CTAGAA-AA-T-GTTGT-CCCAAAA--ACTTGCGATTATATC-G----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGAGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-GTAT-AT-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|7 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAGTTAGATGG-AT---------T---CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAA-TGGTTGATCCA--GAGTGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTG-AAAATACTTGT-GCA-GT-GGACCAGAATTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGA-CTCGTGTAAAAAAT-TGAGGCC-AT-ATGTATT-TTGCATAG-ACGGATGTATAGATGGT---TTCTAGA---GAAAAAT-CATATGGTTG-GAGGTTTA--TACTTCTAACAGTGACCCCCAT--TTA-ATCGCT-AGTTACTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA--GTTGT-CCCAAAA--AGTTGCGATTATATC-G----TGGCA--CAGAAA-GCAGAGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTGTACATAGCCGATAC-TGG-ATGAAT--ATC-TTTCATAC--ACTACGAGATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTA
gi|8 : aatattctGTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|8 : cataTGATGTGGCTATGTTTA-TAAT--GGAA-CAAGTGGAAACATCAGGACAGTTACATGG-ATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTGTT-CGATTGTT-GCTT-CAAA-TTATTGATCCA--GAGGGCGTTCAAA-AAAGACAGCGAAACATATTTCtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT
Alignments
lowQualScore : 1 11 1 1 1 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 3333 2222222222222 888888888888888888888888888888 1 1 11 1 1 1 11 11 1 11 11111 222 111 1 11 11 1 1 1 11 111111 11 11111 11 1111 11 11 11 222 111 111 11 11 111 11 1
lowQualScore : 1 5 77 5 1 5 5 5 5 1 5 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 99 6 0000 2 6 3333333333333 1 666666666666666666666666666666 5 1 8 6 6 6 3 99 0 8 3 2 88 0 0 0 3 55 3 0 00 8 8 0 0 55 88888 8 8 3 666 0 444 0 0 0 8 99 2 2 22 0 2 2 3 0 0 8 999 8 11 777777 5 11 22222 11 5 6 4444 6 6 6 99 6 99 00 11 8 0 44 444 77 000 555 88 00 5 5 777 0 66 5 5 1
lowQualScore : . . .. . . . . . . . . . ................................................................................................ . .. . .... . . ............. . .............................. . . . . . . . .. . . . . .. . . . . .. . . .. . . . . .. ..... . . . ... . ... . . . . .. . . .. . . . . . . . ... . .. ...... . .. ..... .. . . .... . . . .. . .. .. .. . . .. ... .. ... ... .. .. . . ... . .. . . .
lowQualScore : 0 0 55 5 0 5 0 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 7 7777 5 7 9999999999999 7 000000000000000000000000000000 7 0 0 7 7 7 2 22 6 0 2 5 00 0 0 0 2 88 5 8 22 8 0 6 0 88 66666 0 0 2 000 8 000 6 8 6 0 00 5 5 00 0 5 5 2 0 0 0 666 0 00 666666 0 00 88888 00 0 7 2222 7 7 7 22 7 22 88 00 0 8 22 777 99 000 111 00 99 0 7 333 4 33 0 7 0
consensus : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
Reference ( family-2239 ) : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
gi|1 : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAAC-ACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAGTTACATGGGAT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAA-TGAT-GATGCA--GAGGGCGCTTCAT-CAAGACAG-AAAACAGACTTCCTAG-TGAAAAATATTGGTTGCA-GT-GGACAGGATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTAA-TACTTTTAAGAGTGACCCC-ATTGTTT-ATTGCTGGGTTATTACGTGA-C-GCAGTTAGAT-CTAGAA-AAATTGTTGT-CCCAAAA--ACTTGCGATTATATCTG----TG-CA--CAGAAA-AC--AGGCTTGA--ATCATGGTGA-TATATTTCCAA-AAGCATTG----TA-CCA-TAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAACTGAAGACAAGTTTTTAAACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|10 : TTATATTTGGATCTAGCAGTCATAACCAG--AGGATTGA--ATCATGGTGGTGATTTTTCCGA-AAGCACTG----CAGCCAACAC-TGG-ATGAAT--ACC-TTTGAAAC--ACTACGAGATGAAGGC-AGTTTC--ACCTGTGACTTTGTA-GACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TACGATATAAA-AAAATCAA---------TAGTTACCCATG-CCAAGAAATTTTCAAATT
gi|11 : tgtg---------T---CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTATT-CGACTGTT-GCTT-AAAA-TGATTGATCCA--GAGTGCGCATAAA-CAAGACAGTGAAACAGACTTCCTAGGTG-CAAATACTTCT-GCA-GT-GG----------------AGTGGATCAGATTTTA-TATCAAACGTAGA-CTCGTGTAAACAA---GAGGCC
gi|13 : attctgaagtgtaATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAGTTACGTGG-AT---------T---C-TAAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTGTT-GCTT-AAAA-TGATTGATCCA--GAGcacaggctttaac
gi|15 : gttattcgaatattcttcTTTTA-TATGAAAC-TAGAC-TCGTGTAAAAAAATTGAAGCC-AT-ATGGATT-TTACATAA-ACGGATAAATAGATGGT---TTCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTTA--TACTTTTAt
gi|19 : TCCAA-AAGCATTG----CAGCGAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACG
gi|2 : CTATGCATAATGATTGGGAC-CAAGTGGAAAAATCCAG-C--TTA-ATGG-AT---------T---CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTT-AAAAATGATGGATCGAATGAGGGCGCTTCGATCCAGACAG--AAACAGACTTCCTAGGT-AAAAATACTTGT-GCAGGTGGGACA-GATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCTCATAATGGATTGTTGCATAGTAC-GAT-TATAGATGGTT--TTCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTATGTACTTTTAAGAGTGA-CCCCATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAAT-GTTGTCCCCAAAAGGACTTGCGATTATATCTG----TGCCA--CAGAAA-CC--AGGCTTGAAGATCATGGT-GGTATATTTCCAAGAAGCATTG----TA-CCAATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGACAGTTTTT--AACTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-GTATAATGGGAATCAAAG-AGATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|3 : aAAAAGTTTAC-ATG-TATA-T-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAACTggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|3 : AGAA-AAAT-GTTGT--CTAAAA--TCTTGCggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttggcaagattttagacaacatttttctttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|4 : aaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaaactggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttgCGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTAC-ATG-TATA-T-GGAATCAAAGAA-ACGCTA--TA-TCATATCTATA-GATTTTAAAACTttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|6 : TGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAGTTACATGG-AT---------T---CTTGAAG-----------------T------------TTTGT-TGTGAATCAGGAGAggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
gi|6 : atagtct--TGAAGCCA-TA-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCT---CGA---GAAAAATAA-TATGTTTG-GAGGCTTA--TACTTTTAAGAGTGACCCCCATT--TA-ATTGCTGG-TTATTACGTGAAC-GCATTTAGAT-CTAGAA-AA-T-GTTGT-CCCAAAA--ACTTGCGATTATATC-G----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGAGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-GTAT-AT-GGAATCAAAG-ATACACTA--TA-TCATATCCAAG-GTTTTTAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|7 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAGTTAGATGG-AT---------T---CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAA-TGGTTGATCCA--GAGTGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTG-AAAATACTTGT-GCA-GT-GGACCAGAATTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGA-CTCGTGTAAAAAAT-TGAGGCC-AT-ATGTATT-TTGCATAG-ACGGATGTATAGATGGT---TTCTAGA---GAAAAAT-CATATGGTTG-GAGGTTTA--TACTTCTAACAGTGACCCCCAT--TTA-ATCGCT-AGTTACTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA--GTTGT-CCCAAAA--AGTTGCGATTATATC-G----TGGCA--CAGAAA-GCAGAGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTGTACATAGCCGATAC-TGG-ATGAAT--ATC-TTTCATAC--ACTACGAGATGAAGA-AAGTTTT--AACTGTGACTTTGTA-GACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTA
gi|8 : aatattctGTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|8 : cataTGATGTGGCTATGTTTA-TAAT--GGAA-CAAGTGGAAACATCAGGACAGTTACATGG-ATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTGTT-CGATTGTT-GCTT-CAAA-TTATTGATCCA--GAGGGCGTTCAAA-AAAGACAGCGAAACATATTTCtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
blockSeqs : A . . . T T G G C G C T A TG . AGGT C . ATAAACTTTTACA A TGTATCAAGAATGGTT A A C . . A T AT T T G G . G G A CA T GC C . C AT CATAA G T A TTC AGT A T TG C C TG T G G A G G T AT C GG TGGATC G GT GCAG AG T G TACA G A A TG T CA CA . G CA ATG GG GCA GA CC GA A G AG GT C A C
blockSeqs : . . . AGGT C . T T TGTATCAAAAATGGT . G T . . . T . . C G A . . . A A A C C . C T ATA . . G T . A . . C C T . G G A . . . AT . . TG C . CAG . G . . G . . . . . C . . TA ATT . . AA T GG A . AT CT G . T
blockSeqs : . . . AGGA G . T T TGTATCAAGAATGGG . G . . . . G . . C G G . . . . . . . . . . . ATA . . G . . . . . . C . . . . A . . . T . . G G . CC . G . . G . . . . . A . . . AT . . AT C G A . AA CT G . A
blockSeqs : . . . CAG C . T T GCT . G . . . . T . . . . . . ATA . . . . . . . . . A . . G G . AC . G . . G . . . . . A . . . . . . A C G A . AT . . . A
blockSeqs : . . . . . . T T TTT . . . . . . T . . . . . . . . . . . . . A C G . . A . . . T
blockSeqs : T . T . . . . . C G . . . . . . A
blockSeqCons : AGGT ATA** T** ** AT* G***** A* ** AT* A** C* G* AN* T*
originalCons : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCAATAATGGATT-TTGCATAG-ACGGATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTG----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGACAAGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGGTATAAT-GGAATCAAAG-A-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
finalCons : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGGTCAGTTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGCCATA--TGGATT-TTGCATAG-ACGGATGTATAGATGGTT--TTCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCG-----TGGCA--CAGAAA-AC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGAA-AGTTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTATA--ATTGGTGACTAAAAGTTTAC-ATG-TATAAT-GGAATCAAAGAN-ACACTAT-TAGTCATATCCAAG-GTTTTTNAAACT
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT
Alignments
lowQualScore : 1 11 1 1 1 1 1 1 999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 2222 2222222222222 888888888888888888888888888888 1 1 1 1 1 11 11 2 11 1 111 111 1 11 11 1 1 1 11 2 11 11 1111 11 11 222 111 111 1 1 1 22222
lowQualScore : 1 5 77 5 1 5 5 5 5 1 5 1 666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666 6 99 6 7777 6 2 6 3333333333333 1 666666666666666666666666666666 5 1 8 6 6 6 3 99 0 8 3 2 55 3 0 0 0 3 55 3 0 00 8 8 0 0 55 6 8 8 8 8 8 3 0 111 444 0 0 0 8 99 2 2 22 0 2 2 3 0 0 8 999 8 11 0 8 0 11 11 5 6 4444 6 6 6 99 6 99 88 8 11 8 0 44 444 77 000 555 1 1 5 5 5 5 4 0 11111 5 1
lowQualScore : . . .. . . . . . . . . . ................................................................................................ . .. . .... . . . ............. . .............................. . . . . . . . .. . . . . .. . . . . . .. . . .. . . . . .. . . . . . . . . ... ... . . . . .. . . .. . . . . . . . ... . .. . . . .. .. . . .... . . . .. . .. .. . .. . . .. ... .. ... ... . . . . . . . . ..... . .
lowQualScore : 0 0 55 5 0 5 0 0 0 0 0 0 000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 7 22 7 8888 7 5 7 9999999999999 7 000000000000000000000000000000 7 0 0 7 7 7 2 22 6 0 2 5 88 2 0 0 0 2 88 5 8 22 8 0 6 0 88 7 0 0 0 0 0 2 6 888 000 6 8 6 0 00 5 5 00 0 5 5 2 0 0 0 666 0 00 0 8 8 00 00 0 7 2222 7 7 7 22 7 22 66 0 00 0 8 22 777 99 000 111 4 4 7 0 7 7 1 4 99999 7 0
consensus : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGG-CAG-TTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGC-CA-T-A-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTT--TCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATCTGTGGCACAGAAAAC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAG-TTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-G-TATAAT-GGAATCAA-AGA-ACACTACTTAGTCATATCCAAG-GTTTTTNAAACT
Reference ( family-2239 ) : GTNTGGCACGGGCCGTGGAAAGCANTTGACGTGCTTGTAGAGTTTTATTTCAAGTTANGATTTAACCACAAGGAAATTNTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATCAGGTCAG-TTACATGG-AT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAGTGTTTCGATTGTT-GCTT-AAAA-TGATTGATCCA--GAGGGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAAATACTTGT-GCA-GT-GGACAGGATTTTAGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGACCTCGTGTAAAAAA--TGAAGC-CA-T-A-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTT--TCTCGA---GAAAAATAAATATGTTTG-GAGGTTTA--TACTTTTAAGAGTGACCCCCATTGTTA-ATTGCTGGGTTATTACGTGAAC-GCAGTTAGAT-CTAGAA-AAAT-GTTGT-CCCAAAA--ACTTGCGATTATATC-GTGGCACAGAAAAC--AGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAG-TTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAAACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-G-TATAAT-GGAATCAA-AGANACACTA-TTAGTCATATCCAAG-GTTTTTNAAACT
gi|1 : GTTTGGCACGGGCTGTAGAAAGCAGT-GACGT-CTTGTAAA-TTTTATTT-AAGTTATGATTTAAC-ACAAGAAAATTGTGCAAATGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGATGTGGCT--GCATA-TGAT--GGACGCAAGTGACAAAATC----CAG-TTACATGGGAT---------T---CTTGAAGT-------------T--T------------TTTGT-TGTGAATCAGGAGAATGTTTCGATTGTTTGCTTTAAAA-TGAT-GATGCA--GAGGGCGCTTCAT-CAAGACAG-AAAACAGACTTCCTAG-TGAAAAATATTGGTTGCA-GT-GGACAGGATTTTAGTA-TAATGGATGAGATTTTAATATGAACCGTAGACCTCGTGTAAAAAA--TGAAGC-CAAT-AATGGATT-TTGCATAG-ACGAATGTATAGATGGTTTCTTCTCGA---GAAAAATAAATATGTTTG-GAGTTTTAA-TACTTTTAAGAGTGACCCC-ATTGTTT-ATTGCTGGGTTATTACGTGA-C-GCAGTTAGAT-CTAGAA-AAATTGTTGT-CCCAAAA--ACTTGCGATTATATCTGTG-CACAGAAAAC--AGGCTTGA--ATCATGGTGA-TATATTTCCAA-AAGCATTG----TA-CCA-TAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAACTGAAGACAAG-TTTTTAAACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTTTAGACGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGG-TATAAT-GGAATCAA-AGA-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|10 : --AGGATTGA--ATCATGGTGGTGATTTTTCCGA-AAGCACTG----CAGCCAACAC-TGG-ATGAAT--ACC-TTTGAAAC--ACTACGAGATGAAGG-CAG-TTTC--ACCTGTGACTTTGTA-GACAAAAACATTCTTCAATTTTGCTTTATG--CAAACG---ATA--C---AAGTATGCATGA-ATTGGTGAATATGAATTGA-TAC-GATATAAA-AAAATCAATAG---------TTACCCATG-CCAAGAAATTTTCAAATT
gi|11 : tgtgttatatttggatctagcagtcataaccag---------T---CTAGAAAG-------------C--T------------TTTGT-TGTGAATCAGGAGAGTATT-CGACTGTT-GCTT-AAAA-TGATTGATCCA--GAGTGCGCATAAA-CAAGACAGTGAAACAGACTTCCTAGGTG-CAAATACTTCT-GCA-GT-GG----------------AGTGGATCAGATTTTA-TATCAAACGTAGA-CTCGTGTAAACAA---GAGGC-C
gi|13 : attctgaagtgtaATGTGGCTATGCATA-TGTT--GGAC-CTAGTGGAAAAATCAGGTCAG-TTACGTGG-AT---------T---C-TAAAGTGTATCAAGAATGGT--T------------TTT-T-TGTGAATCAAGAGAGTGTTCC-ATTGTT-GCTT-AAAA-TGATTGATCCA--GAGcacaggctttaac
gi|15 : gttattcgaatattcttcTTTTA-TATGAAAC-TAGA-CTCGTGTAAAAAAATTGAAGC-CA-T-A-TGGATT-TTACATAA-ACGGATAAATAGATGG-TT--TCTCAA---GAAAAAT-AATTTGGTTG-GAGGTTTA--TACTTTTAt
gi|19 : TCCAA-AAGCATTG----CAGCGAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACG
gi|2 : CTATGCATAATGATTGGGAC-CAAGTGGAAAAATC----CAGCTTA-ATGG-AT---------T---CTTGAAGT-------------T--T------------TT-GTATGTGATCCAGGAGAAT-TTTCGATTGTT-GCTT-AAAAATGATGGATCGAATGAGGGCGCTTCGATCCAGACAG--AAACAGACTTCCTAGGT-AAAAATACTTGT-GCAGGTGGGACA-GATTTTAGTAGCAATGGAT-AGATTTTA-TATGAACCGTAGACCTCGTGTAAAAAA--TGAAGCTCA-TAA-TGGATTGTTGCATAGTAC-GAT-TATAGATGGTTT--TCTCGAAGTGAAGAATAAATATGTTTGTGAGGTTTATGTACTTTTAAGAGTGA-CCCCATTGTTATATTGCTGGGTTATTACGTGAACGGCAGTTAGATGCTAGAATAAAT-GTTGTCCCCAAAAGGACTTGCGATTATATCTGTGCCACAGAAACC--AGGCTTGAAGATCATGGT-GGTATATTTCCAAGAAGCATTG----TA-CCAATACATGGAATGAATTGATCTTTTCAAACCAACTACGAAATGAAGA-CAGTTTTT--AACTGTGACTTTTTAGGACAAAAACATGTTTTAATTGTGCTTTATGTTTAAGCGATGATA--CGCAAGGTATGTAT-A-ATTGGTGACTAAAAGTTTA-CAT-G-TATAATGGGAATCAA-AGAGATACTACTTAGTCATATCCAAG-GTTTTTTAAACT
gi|3 : aAAAAGTTTA-CAT-G-TATA-T-GGAATCAA-AGATACACTA-T--ATCATATCCAAG-GTTTTTAAAACTggtctcagtgacgtcattctttgtcaatctcaatccgacttgttgcgacaatcatatggtagccagga
gi|3 : AGAA-AAAT-GTTGT--CTAAAA--TCTTGCggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttggcaagattttagacaacatttttctttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|4 : aaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaaactggtctcagtgacgccattcttgtcaatctaccagacttgttgcgacaatcatatagtagcaggaacaattaccgatccattttttaaagggggtctaccggttgatttggtttctgcaaaaggggcgggatatagcgcccagcgcctcaaattaatgcgtcgtatctttgCGATTATAGGC---GAGTATATAC------GGT----ATAAGTTTA-CAT-G-TATA-T-GGAATCAA-AGAAACGCTA-T--ATCATATCTATA-GATTTTAAAACTttttgaataaagggggacggttccaacttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaggtgaaattgagagacgtttatgatgacttaagtaagtctttggatcaattagtcccgtgaggtggccatgtgtctgaactattcagaactttatgagagtggttgcacttaatagtacgtgatactannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaactatcatccaacaatttnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnataccagcaatttcacatggctttgaaattgccagatgca
gi|5 : cGAT-ATA--C---AAGTATGTAT-A-ATTGGTGACTAAAAGTTTACCATGG-TATAAT-GGAATCAA-AGA-ATACTACTTAGTCATATCCAAG-GTTTTTTAAACTggtctcaatgacgccattcttttcagtctaccaaacttgtcgcgacaatcatgtagtagcaggaacgctgcatgacgtcacaatcaccgatccattttttttaaagggggtctaccgttagtttggttttcaaaggggacgggaatgcccaccctcataatgcgttatctttgcaattttagacatagttttcttttttaaaaagggggacggatcaactcaattcagtccgcaaattaagagtttcaattcaaaagtactgaccattttacaggtgattgaaattttgacttaagtcaaagtctttttcgtgatcccgtggcctgtttctgaactttccagcactttcgaaattggttgcacttaagtaatagtatgtgataatattccagggtaggccctttgggggcaatctaggtgtccctttgtacaaatatgttatattaccagacctgcttttggacggtgaactatcatccaacaatttgataccatttcgtatttggtacattgctttgtcattaaaagctttgaatcacaaatttgaatttgtttcagtttgttgatttattactaagttgttgctcctggactcagaaaaataccagcaattccacatggttttgaaatttccagatgcaatttt
gi|6 : TGATGTGGCTATGCATA-TGAT--GGAC-CAAGTGGAAAAATC----CAG-TTACATGG-AT---------T---CTTGAAG-----------------T------------TTTGT-TGTGAATCAGGAGAggttctcagtgacgtcattcttgtcaatactcaaccagacttgttggacaatcatatgtagccggaacaattacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnttaattcagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgtttcctgaactttccaagaacttttgaaaatgagttgcacttaatgtacnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnctgtgacatcatccaccaatttgataccatttcatatttggtacatttgctttgcattagtttgaatcacaaatttgaatttgtttcagttgttgatttattacttaagttgttgttcctggactcagaaaaataccagcaactttcacatggctttgaattgccagatgcatcttt
gi|6 : atagtct--TGAAGC-CA-T-A-TGGATT-TTGCATAG-ACGGATGTATAGATGGTTT---CTCGA---GAAAAATAA-TATGTTTG-GAGGCTTA--TACTTTTAAGAGTGACCCCCATT--TA-ATTGCTGG-TTATTACGTGAAC-GCATTTAGAT-CTAGAA-AA-T-GTTGT-CCCAAAA--ACTTGCGATTATATC-GTGGCACAGAAAAC--AGGCTTGA--ATCATGGTGAGTATATTTCCAA-AAGCATTG----TAGCCAATAC-TGG-ATGAAT--ATC-TTTCAAAC--ACTACGAAATGAAGA-AAG-TTTT--AACTGTGACTTTGTA-GACAAAAACATGTTTTAATTGTGCTTTATGTT--AACG---ATA--C---AAGTATGTATAA-ATTGGTGACTAAAAGTTTA-CAT-G-TAT-AT-GGAATCAA-AGATACACTA-T--ATCATATCCAAG-GTTTTTAAAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntgaagccatatggattttgcatagacggatgtatagatggtttctcgagaaaaataatatgtttggaggcttatacttttaagagtgacccccatttaattgctggttattacgtgaacgcatttagatctagaaaatgttgtcccaaaaacttgcgattatatcgtggcacagaaaacaggcttgaatcatggtgagtatatttccaaaagcattgtagccaatactggatgaatatctttcaaacactacgaaatgaagaaagttttaactgtgactttgtagacaaaaacatgttttaattgtgctttatgttaacgatacaagtatgtataaattggtgactaaaagtttacatgtatatggaatcaaagatacactatatcatatccaaggtttttaaa
gi|7 : atagtcttgatgtggctatgcatatgatggaccaagtggaaaaatccagttacatggattcttgaagttttgttgtgaatcaggagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTGATGTGCCTATGCATA-TGAT--GAAC-CAAGTGGAAAAATCAGGTCAG-TTAGATGG-AT---------T---CT-GAAGTGTATCAAAAA---TGGT------------TTTGT-TATGAAACAGGAGAATGTT-CGATTGTT-GCTT-AAAA-TGGTTGATCCA--GAGTGCGCTTAAA-CAAGACAGCGAAACAGACTTCCTAGGTGAAAA-TACTTGT-GCA-GT-GGACCAGAATTTGGTA-CAGTGGATCAGATTTTA-TATGAAACGTAGA-CTCGTGTAAAAAAT-TGAGGC-CA-T-A-TGTATT-TTGCATAG-ACGGATGTATAGATGG-TT--TCTAGA---GAAAAAT-CATATGGTTG-GAGGTTTA--TACTTCTAACAGTGACCCCCAT--TTA-ATCGCT-AGTTACTACGTGAAC-GCAGTTAGAT-CTAGAA-AAA--GTTGT-CCCAAAA--AGTTGCGATTATATC-GTGGCACAGAAAGCAGAGGCTTGA--ATCATGGTGGGTATATTTCCAA-AAGCATTGTACATAGCCGATAC-TGG-ATGAAT--ATC-TTTCATAC--ACTACGAGATGAAGA-AAG-TTTT--AACTGTGACTTTGTA-GACAAAAACATTTTTCAATTTTGCTTTATGTT--AACG---ATA--C---AAGTATGTAT-ATATCGGTGACTA
gi|8 : aatattctGTATGG-ACGG--CGTGGAA-GCATTTGATGTGCTTGTAGAGTTTTATTTCAAGTTAGGATTTAACCACAAAGAAATTTTGCA
gi|8 : cataTGATGTGGCTATGTTTA-TAAT--GGAA-CAAGTGGAAACATCAGGACAG-TTACATGG-ATATAAACTTTTACACTTGAAGT-------------G--TATCAAGAATGGGTTTGT-TGTGAATCAGGAGAGTGTT-CGATTGTT-GCTT-CAAA-TTATTGATCCA--GAGGGCGTTCAAA-AAAGACAGCGAAACATATTTCtttgatggctttttataatggaatcgttattagtattagaagcttgagacgtcttttggcgcaagagttatttagatattcttgatgtggctatgtttataatggaacaagtggaaacatcaggacagttacatggatataaacttttacacttgaagtgtatcaagaatgggtttgttgtgaatcaggagagtgttcgattgttgcttcaaattattgatccagagggcgttcaaaaaagacagcgaaacatatttcaga
8 sequences could not be aligned to this reference sequence:
Unaligned ( gi|9 ): TGTGTCTGAACTTTCCAGAACTTTATGAAATGGTTGCACTCTGAATGTACGAAGTGATAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGAACACTCATCCAACAATTTGATACATATTCATATTTTGGTACATTGTGCTTTGTATTAAGTTTGAATCACAAATTTGAGATTTGTTTCAGTTGTTGATTGTTATTACTAAGTTGTTGTTCCTGGCTCAGAAAAATACCGAGCAATTTCATTCAATGGCTTTGAATTGCCAGATGCATCTCTTTTATTG
Unaligned ( gi|12 ): AAGCACTATTCGGATTTACTTGAAGTTGCATTATTCTTAAAGGAAAAAATGGAATCGTCAGATCAACTCCATGGATACAAGATTATGCATCTTCAATGTATACAGTCCGGGTATACGATCACACAAGAAACTGTTCGGCTCTTACTTCACATCATTGATCC
Unaligned ( gi|14 ): ATATTATTTGATATTTGGCACATTGCTTTGCATATAACAGGTTACAGATTCAAGTTCGAGTTTTGGTTTAGATCATTCTCAATTTTCACAGAGTTTATGGCCTTGGACTTAGAAA
Unaligned ( gi|16 ): TTTATAAAAGAATCGTTATTAGTATTAGAATCTTGAGACGTATTTTGGCAAAATGGGTTTGTTTTGCCGCAAGAGTTATTTAAATATTCTCGATGCTGTTATG
Unaligned ( gi|17 ): GTGTCTGTAAAGTAGGAGTTTGAGGTCATAAGTAATAAACATTTTACAGGTAATTGAAATTTTGACTTAAGTCTAAGTTTGTTTCATGATCCCGGGGCCAG
Unaligned ( gi|18 ): TTATTAGTATTAGAAACTTGAGACGTCTTTTAGCGAAAATGGGTTTGTTATTCAAATATCCTATAATGTGCTGGTTTCTA
Unaligned ( gi|20 ): TTGACTTAACTTTAATTTGTTTCATGATCCGGGGCCAG
Unaligned ( gi|21 ): TACAGGTGATTGAAATTTTGACGTAAGTAAAAGT