lowQualScore : 11111111111111111111111111111111111111111
lowQualScore : 1111 11 1 111111 11111 1111 111111 1 1111 1111 2222 1111 111 11 1 1 111 1 1111 111 11 22222 2222 88888888888888888888888888888888888888888888888888888888 444444444444444444444 1111 11 1111111 11 3333333333 111 11 88888888888888888888888888888888888888888
lowQualScore : 0000 66 33 5 2 4 1 8888 222222 4 777 22222 777 9 0000 5 5 55 1 666666 7 5 5 6 6 6 6 1 8 1 7777 4444 99999 4444 88 5 2222 5 111 66 22 00 5 5 0 8 3 55 2 222 1 77 2222 3 6 3 6 6 6 0 222 6 6 6 66 88888 8 2222 99999999999999999999999999999999999999999999999999999999 44 5 6 111111111111111111111 3 2222 44 5 00 6 9999999 8 11 7777777777 444 8 0 11 11 1 66666666666666666666666666666666666666666
lowQualScore : .... .. .. . . . . .... ...... . ... ..... ... . .... . . .. . ...... . . . . . . . . . . .... .... ..... .... .. . .... . ... .. .. .. . . . . . .. . ... . .. .... . . . . . . . ... . . . .. ..... . .... ........................................................ .. . . ..................... . .... .. . .. . ....... . .. .......... ... . . .. .. . .........................................
lowQualScore : 6666 99 88 0 4 1 6 5555 888888 4 888 55555 222 2 1111 0 0 99 7 444444 3 7 7 7 7 7 7 8 0 4 0000 2222 88888 0000 33 7 1111 7 666 99 44 44 0 0 4 2 0 22 4 555 4 99 1111 2 7 3 7 7 7 7 777 7 7 7 22 00000 0 0000 66666666666666666666666666666666666666666666666666666666 44 0 0 000000000000000000000 2 0000 44 7 22 7 5555555 0 00 0000000000 000 0 8 00 88 0 11111111111111111111111111111111111111111
consensus : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTANAAAAAT--G-AATAAAATAGGGTC-GAA----A-CATA--CCTTTGAATA--AAACGAAATTGC-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTAATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT--GGAAAAAA-AGTG--C-ACAGCGGG-CA--ANTTTC-TA---ATAT----G----A--A-TTTCAATA----------GATTTNATTTGACAAACA---AC--ACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAA--CGC----GTAA--AA---AT-GTTGTTAC--GTTACTGGTTTTAGATGTCA--AAAATT-TTACGAT-TCGAGTTTCCCATTACA-------CATGAGAGTAAA
Reference ( gi|1 ) : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGTGGGAAATTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGCTATG-A-CGTCAT-AGA-T-AA-CCAAGTT-CTAAAAATA----GATAT----TTTCTTAGAAAAAT--T-AATAAAATATGGTC-AAA----A-CATG--CCTTTGAATA--AAACTAAATTGC-AT-TATTTGATCTAAAATGCTATATCTTATTGTATGTATTAATTAGT-AACAA-TTTTCAGTATC--TA----TTTTAATCACCAGGAATATTTA-TCAGAT-AAA-ATCACAGCT-CAGGTTTT--AGT-AAAA-GACATC-CACTGAATCT--AG-AAAAA-AGTG--T-ACAGCGGA-CA--TTTTTC-TA---ATAT----G----A--A-TTTCGA------------GATTTAATTTGACGAACA---AC--AC--AT-TAT-TCGCATACATT---ATTTTCAAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAA--CGC----ATTA--AA---AT-GTTGTTAC--GTTACTGGTTTTAGATGTCA--A--------------TCGAGTTTTCCATTACATATGTATCATGAGAGTAAA
gi|2 : TGCCTT----A--TGTAAC--AAATTTGGACCGCCG-GGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AAATGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATG-AACGTCAT-AAA-T-AAACCATGTT-CTTAAAATA----GATGT----TTTCTTACAAAAAT--G-AACAAAATATGGTC-AAA----A-CATA--CCTTTGAATA--AA-CGAAATTGC-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAAA-TACAA-TTTTCAGTATC--TA----TTTTAATCACC-GGAATATTTA-TTAGATAAAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGAGTCT--GGAAAAAA-AGTG--C-ACAGTGGA-CA--TTTTTC-AA---ATAT----G----A--ATTTTCGA------------GATTTAATTTGGCAAACA---GC--ACATAT-CAT-TCGCATACATT---ATTTTCAAAAGA-T-TTT-ATT-TTC
gi|4 : agtggagTGCCTT----A--TGTAAC--AAATTTG-ACCGCCGGGGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAAAT-T--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATGAA-CGTCAT-AAA-TAAA-CCATGTT-CTTAAAATA----GATG-----TTTCTTACAAAAAT--G-AACAAAATATGGTC-AAA----A-CATA--CCTTTGAATA--AAACGAAATTGC-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAATAAACAA-TTTTCAGTATC--TA----TTTTAATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCG-CAGGTTTC--AGT-AAAA-GACATC-CACTG
gi|7 : agtggagTGACTA----A--TGTAAC--AAATTTG-ACCGCCGTGGGGATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATAATGTTTCGGAAATT-CAAAAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGAGATG-A-CGTCAG-AGA-T-AA-CCGTGTT-CTAAAAATAGAATGATAT----TTTCTTAGAAAAAT--G-AATAAAATAGGGTC-AAAAAACA-CATGTACCTTTGAATA--AAACGACATTGC-AT-TATTTAATCTGAATTGCTAAATCTTATTGTGTATATAAATTAAT-AACAA-TTTTCAGTATC--TATTTTTTTTAATCACCAGGGA
gi|8 : agtggagTGCTTTTAGAA--TGTAAC--AAATTTG-ACCGCGGTGGGAAATTTGTGAATGAGATACGCAAATGACCACTATA------AA-TGG---TTT-----CTTGATGATGTCTTAGAAATT-C--AAAA-A-GTTTGATAGACTTTTTTGATAGAGCGGCAGGTGC------GAGTTATG-G-AGT-AT-ATATT-GA-TCGTGTTGCTAAAAATG----GACATTAAATTTC-----AAAATAGT-AAGAAAAT-CACTCGAAA----A-CATA--CCTTTAAATG--AGAATAAATTGCAAT-TATTTAATCTGAAGTACTAAATTTTATTGTATG-----ATTAAT-AACAATTTTTTAGAAAC--TA----TTTTAATCAC
gi|5 : ggaagTGCCGT----A--TGTAAC--AGATATG-ACCGCCGTAGGAATTTTCTGAATAAA----GCAAATGACCACTGTG------AA-TGG---TTT-----TT-----ATGTTTTGAAAGAT-G--AATA-A-ATTCGGTt
gi|16 : agtggagTGCCTT----AAATGTAAT--A--TTTG-ACTGCCGTGGGAATTTTCTGAATAAA----TCAAACGACCATTGTG------AA-TAG---Ttccaaacatatgattgaataaaacaggatttgatttgagacgctagattgaaattaataataattttcaatccatattttaatcaccaaggatatctattagatacactcatagctcagattgcagtaaaagacatctactgcgcctggaaaaatagtgcactgcaggtaagattttatatgcatatcataaaataccaagatttcatttgacaaaagatatacatgtatatcatctacatatttccagtggatt
gi|12 : ttagtggagT----A--TGTAACTTGAATTTG-CAAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATATATATGAA-TGGGTTTTT-----TT--TTGGGGGGGGGGGGATTAA--AAAA-A-GCTTAATATAC--TTTTGATAATGCAGCAGGTGTTATAAATAGTTATG-A-CATCATAAGA-T-AA-gtttcgaatttttttta
gi|17 : tagaggagtttcttataT----A--TGTAACTTGAATTTG-ACAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTAT
gi|3 : ttttagaggagtttcttataGCCGTGGGGATTTTCTAAATAAA----GCAAACGACCACTA--------AA-TGG---TTTTATTTCT--ATAATGTTTCGGAAATT-C--AAAAAA-GTTTGATAGAC-TTTTTGATAAAGCGGCAGGTGC------GAGTTGTA-A-CGCCAT-AGA-T-AA-CAAA
gi|15 : TTCCTGAATAAA----G-AAACG------------------------TTT-----CT--ATGATGGTTTGGAAATT-C--AAAA-ACGTTTGATAAAC-CTTTTAATGATATGGCAGGTGC------GAGTTATG-A-TGTacaaacgaaattaaattatttgatttgaaatgctacatcgtattgtatatatcaattaataataactttagtacatattttaatcaccaggaatattcattagataaaatcacagttcagatttcagtaaaagacatccactgcgtctgcagaaaaattgcagcttcataaaatgctaagatttcatttgatttgacaaacaacacatattattcacatacagtggcattttcaagagatttttttttcaatcgttaactgaataataatgtaaaaatcgtaagaatagatattgttgcgttactggtattagatgtaaaa
gi|9 : ggatGTT-CTAAAAATA----TATAT----TTTTTTGAAAAAATA-TGAATAAATGAGGGCT-GAA----ATTATA--CCTTTGAATA--AAATGAAAT-----T-TGTTTG----AAGATG-TAAATCGTATTGTATATATCAATTA---AACAATTTTTCAGTACA--TA----TTTT------------TA--TA-TC---------ACCACGGCT-CAAATTTC--AGTAAAAA-GATATC-CACTGCGCCT--GGAAAAAA-AGTGGCC-ACAGCAGG-GA--AGTTTC--A---ATAC----GA---A--A-TTTCAATAAAATGCTAATGATTTCATTTTGCAAACA---ACAGAC--AT-AAA-T---ATATATT---TTTTTCGCTATATTAGTT-ATT-TT
gi|5 : ATGT----TTT----GAAAGAT--G-AATAAATTCGGTTC-CAA----A-CATA--TGATTGAATA--AAA--------C-AG-GATTTGATTTGAGACGCTA-----GATTG-A------AATTAAT-AATAA-TTTTCA--ATCCATA----TTTTAATCACCAAGGATATCTA-TTAGAT-ACA-CTCATAGCT-CAGATTGC--AGT-AAAA-GACATC-TACTGCGCCT--GG-AAAAATAGTG--C-ACTGCAGG-TAAGATTTTA-TATGCATATCATAA----A--A-TACCAA------------GATTTCATTTGACAAA-AGATAT--AC--ATGTATATCATCTACA-T---ATTTCCAGTGGATT-
gi|14 : agtggagtgccgtatgtaacagatatgaccgccgtaggaattttctgaataaagcaaatgaccactgtgaatggtttttAAAAG--T-GATAAAATAGGGCT-GAA----G-CATA--CCTACGAAAACGAAATTGAATTAC-ATGTATTTAATTTGAAATACTAGATCGTATTGTATATATCAATTAAT-A
gi|3 : --AAACGAAATTAA-AT-TATTTGATTTGAAATGCTACATCGTATTGTATATATCAATTAAT-AATAA-CTTT-AGTACA--TA----TTTTAATCACCAGGAATATTCA-TTAGAT-AAA-ATCACAGTT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT--GC-AGAAA-AAT---T-GCAGC-----------TTCATA---AAAT----GCTAAG--A-TTTC---------------ATTTGATTTGACAAACA---AC--ACATAT-TAT-TCACATACAGTGGCATTTTCAAGAGATT-TTT--TT-TTCAA-TCGTTAACTGAATAAT-AATGTAAAAATCGT----AAGAATAG---AT-ATTGTTGC--GTTACTGGTATTAGATGTAA--A--------------
gi|6 : gccgtggggattttctaaataaagcaaacgaccactaaatggttttatttctataatgtttcggaaattcaaaaaagtttgatagactttttgataaagcggcaggtgcgagttgtaacgccatagataacaaaacTATTTAGTTAGAT-AAAGATCACAGCTGCAGATTTTCAAGT-AAAAAGACATCGCA-TGCGTCTTGGG-GAAAA-AGTG--CGACAGTCAATCA--AGTTTT-TA---TTAT----A----ATGA-TTTCAATA----------GATCTA-TTT-ACAAACA---A---AC--A---------CATAT-TT---GTTCTCAAATGATT-TTTTATT-TTCA--TCG-TAATTGAATAAT-AGTGTGAAA--CGT----GTAA--AATAGAT-GTTGTTACGGGTTACTAG----AGGTGCTACTC--------------TCGAG-TTTCCATTATAT--------TGAGAGTAAAa
gi|10 : ggattACACATT---GTTTTCTAAAGATA-TTG-ATT-------------ATTGAACACTTACTGCGAAA--CGC----GTAA--AA---GTAGATGTTGC--GGTACTGATTTTAGATGTCA--AAAATTTTTACGATCTCGAATTTCCCA-TA-------ATCATGATAGTGAAcaattccatgaattgacaattttccgaacatttgtatgtgtctctacctgggaatcgaatggtggctcataatgg
gi|11 : caTTTCGAA---TT-TTT-TTTATTCAAATCG-CAATTAAATAAA-AATGTCAAA--CGC----GTAA--AA---AT-GTTGTTAC--GTTACTAGTTTTACATGTCA--AAAAATGATACAATTTCGAGTTTCCCACTAC--------CAACAGAGTAAAcaaattccacgaatgcacactgattttcacatttatatgtgtctctctactgggaatgatggtgggcataa
gi|13 : gATAAT-AATGTGAAA--CGCGAAAAAAA--AA---AT-AC-GTTAC--TTAACTGGTTTAAGATGTCA--AAAATGATACAATC-TCGATTTCCCCATTA-A-------CATGAGAGTAtaaattgcatcaatgcacaattttcacatttgtatgtgtccctctactgggaaggatggtaggcgtaatgc
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|18 ): TAACAAATTCCATGAATGCACAATTCATACATTTATATGTGTCTCTCTACTTGGAATATGGTGGGCATAATGCA
Alignments
lowQualScore : 11 111111 11111 111111 1111 111 1111 1111 11111111 1 1111 1111 11 2222222 7777777777777777777777 111111111 111 11 1111 11111111 555555555555555 444444444
lowQualScore : 9999 66 22 4 7 0 7777 111111 4 777 11111 66 0 7777 4 4 5 0 444444 5 5 5 5 5 5 6 4444 000 6 1 66 22 3333 5 0000 44444444 4 1 0 2 4 0 66 5555 5 5 5 5 2 5 77 5 5 5 6 1 6666 6 9999999 00 7777777 6 1111111111111111111111 7 2 6 111111111 4 000 3 2 5 77 5 33 8 6 4444 99999999 6 99 6 333333333333333 3 333333333 0
lowQualScore : .... .. .. . . . .... ...... . ... ..... .. . .... . . . . ...... . . . . . . . .... ... . . .. .. .... . .... ........ . . . . . . .. .... . . . . . . .. . . . . . .... . ....... .. ....... . ...................... . . . ......... . ... . . . .. . .. . . .... ........ . .. . ............... . ......... .
lowQualScore : 4444 11 22 4 1 5 7777 555555 0 000 11111 11 1 9999 4 4 0 2 444444 0 0 7 7 7 7 7 2222 000 6 0 99 66 0000 0 6666 00000000 4 7 8 6 4 0 99 6666 0 7 7 7 7 7 99 7 7 7 7 7 8888 7 8888888 22 5555555 7 0000000000000000000000 5 5 7 888888888 9 000 1 2 0 44 7 66 0 7 2222 33333333 7 22 7 888888888888888 2 000000000 8
consensus : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGTT---TTCTTAGAAAAAT--GAATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTAC--GTTACTGGTTTTAGATGTC-AAAAA-TGNTACGA-TCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
Reference ( family-2216 ) : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGTT---TTCTTANAAAAAT--GAATAAAATAGGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAANTTTC-TAATATG----A--A-TTTC----AAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTAC--GTTACTGGTTTTAGATGTC-AAAAA-TTTTACGA-T-TCGAGTTTCCCATTACA-------CATGAGAGTAAA
gi|1 : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGTGGGAAATTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGCTATG-A-CGTCAT-AGA-T-AA-CCAAGTT-CTAAAAATA----GATATT---TTCTTAGAAAAAT--TAATAAAATATGGTC--A-AAAC-A----TGCCTTTGAATAAAACTAAATTG-----C-AT-TATTTGATCTAAAATGCTATATCTTATTGTATGTATTAATTAGT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TCAGAT-AAA-ATCACAGCT-CAGGTTTT--AGT-AAAA-GACATC-CACTGAATCT-AG-AAAAAAGTG--T-ACAG-CGGACATTTTTC-TAATATG----A--A-TTTC----G------A----------GATTTAATTTGACGAACAA-CAC--AT-TAT-TCGCATACATT---ATTTTCAAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCATTA----AA---A----T-GTTGTTAC--GTTACTGGTTTTAGATGTC-AA---------------TCGAGTTTTCCATTACATATGTATCATGAGAGTAAA
gi|10 : ACACATT---GTTTTCTAAAGATA-TTG-ATT-------------ATTGAACACTTACTGCGAAACGCGTAA----AA---G----TAGATGTTGC--GGTACTGATTTTAGATGTC-AAAAATTTTTACGA-TCTCGAATTTCCCATAAT--------CATGATAGTGAA
gi|11 : caTTTCGAA---TT-TTT-TTTATTCAAATCG-CAATTAAATAAA-AATGTCAAACGCGTAA----AA---A----T-GTTGTTAC--GTTACTAGTTTTACATGTCAAAAAA-TGATACAATT-TCGAGTTTCCCACTAC--------CAACAGAGTAAAcaaattccacgaatgcacactgattttcacatttatatgtgtctctctactgggaatgatggtgggcataa
gi|12 : gT----A--TGTAACTTGAATTTG-CAAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATATATATGAA-TGGGTTTTT-----TT--TTGGGGGGGGGGGGATTAA--AAAA-A-GCTTAATATAC--TTTTGATAATGCAGCAGGTGTTATAAATAGTTATG-A-CATCATAAGA-T-AA-taaattgcatcaatgcacaattttcacatttgtatgtgtccctctactgggaaggatggtaggcgtaatgc
gi|13 : tagaggagtttcttataATAAT-AATGTGAAACGCGAAA----AA---AAAAAT-AC-GTTAC--TTAACTGGTTTAAGATGTC-AAAAA-TGATACAA-TCTCGATTTCCCCATTA-A-------CATGAGAGTA
gi|14 : AAAAGT--GA-TAAAATAGGGCT--G-AAGC-A----TACCTACGAA---AACGAAATTGAATTAC-ATGTATTTAATTTGAAATACTAGATCGTATTGTATATATCAATTAAT-Atacaagttccatgaattcacacttttcacatttaaatgtgtccctctacctggtatgatggtggctataatgc
gi|15 : GGATTTCCTGAATAAA----G-AAACG------------------------TTT-----CT--ATGATGGTTTGGAAATT-C--AAAA-ACGTTTGATAAAC-CTTTTAATGATATGGCAGGTGC------GAGTTATG-A-TGT
gi|16 : TGCCTT----AAATGTAAT--A--TTTG-ACTGCCGTGGGAATTTTCTGAATAAA----TCAAACGACCATTGTG------AA-TAG---T
gi|17 : ttagtggagT----A--TGTAACTTGAATTTG-ACAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATgtttcgaatttttttta
gi|2 : ttttagaggagtttcttataTGCCTT----A--TGTAAC--AAATTTGGACCGCCG-GGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AAATGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATG-AACGTCAT-AAA-T-AAACCATGTT-CTTAAAATA----GATGTT---TTCTTACAAAAAT--GAACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAA-CGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAAA-TACAA-TTTTCAGTATC--TA----TTTTA-ATCACC-GGAATATTTA-TTAGATAAAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGAGTCT-GGAAAAAAAGTG--C-ACAG-TGGACATTTTTC-AAATATG----A--ATTTTC----G------A----------GATTTAATTTGGCAAACAG-CACATAT-CAT-TCGCATACATT---ATTTTCAAAAGA-T-TTT-ATT-TTC
gi|3 : agtggagGCCGTGGGGATTTTCTAAATAAA----GCAAACGACCACTA--------AA-TGG---TTTTATTTCT--ATAATGTTTCGGAAATT-C--AAAAAA-GTTTGATAGAC-TTTTTGATAAAGCGGCAGGTGC------GAGTTGTA-A-CGCCAT-AGA-T-AA-C
gi|3 : AAACGAAATTA-----A-AT-TATTTGATTTGAAATGCTACATCGTATTGTATATATCAATTAAT-AATAA-CTTT-AGTACA--TA----TTTTA-ATCACCAGGAATATTCA-TTAGAT-AAA-ATCACAGTT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT-GCAGAAAAATTG-----CAG-C--------TTCATAAAATGCTAAG--A-TTTC-----------------------ATTTGATTTGACAAACAA-CACATAT-TAT-TCACATACAGTGGCATTTTCAAGAGATT-TTT--TT-TTCAA-TCGTTAACTGAATAAT-AATGTAAAAATCGTAAGAATAG---A----T-ATTGTTGC--GTTACTGGTATTAGATGTA-AAAaaaacaaacgaaattaaattatttgatttgaaatgctacatcgtattgtatatatcaattaataataactttagtacatattttaatcaccaggaatattcattagataaaatcacagttcagatttcagtaaaagacatccactgcgtctgcagaaaaattgcagcttcataaaatgctaagatttcatttgatttgacaaacaacacatattattcacatacagtggcattttcaagagatttttttttcaatcgttaactgaataataatgtaaaaatcgtaagaatagatattgttgcgttactggtattagatgtaaaa
gi|4 : gccgtggggattttctaaataaagcaaacgaccactaaatggttttatttctataatgtttcggaaattcaaaaaagtttgatagactttttgataaagcggcaggtgcgagttgtaacgccatagataacaaaacTGCCTT----A--TGTAAC--AAATTTG-ACCGCCGGGGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAAAT-T--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATGAA-CGTCAT-AAA-TAAA-CCATGTT-CTTAAAATA----GATG-T---TTCTTACAAAAAT--GAACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAATAAACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCG-CAGGTTTC--AGT-AAAA-GACATC-CACTG
gi|5 : agtggagTGCCGT----A--TGTAAC--AGATATG-ACCGCCGTAGGAATTTTCTGAATAAA----GCAAATGACCACTGTG------AA-TGG---TTT-----TT-----ATGTTTTGAAAGAT-G--AATA-A-ATTCGGT
gi|5 : agtggagATGTT---TT----GAAAGAT--GAATAAATTCGGTTC--C-AAAC-A----TATGATTGAATAAAACAGG---------------ATTTGATTTGAGACGCTAG-----ATTG-------AAATTAAT-AATAA-TTTTCA--ATCCATA----TTTTA-ATCACCAAGGATATCTA-TTAGAT-ACA-CTCATAGCT-CAGATTGC--AGT-AAAA-GACATC-TACTGCGCCT-GGAAAAATAGTG--C-ACTG-CAGGTAAGATTT-T-ATATG----C--A-TATCATAAAATACCAA----------GATTTCATTTGACAAAAGA-TATACATGTATATCATCTACA-T---ATTTCCAGTGGATT-tccaaacatatgattgaataaaacaggatttgatttgagacgctagattgaaattaataataattttcaatccatattttaatcaccaaggatatctattagatacactcatagctcagattgcagtaaaagacatctactgcgcctggaaaaatagtgcactgcaggtaagattttatatgcatatcataaaataccaagatttcatttgacaaaagatatacatgtatatcatctacatatttccagtggatt
gi|6 : agtggagtgccgtatgtaacagatatgaccgccgtaggaattttctgaataaagcaaatgaccactgtgaatggtttttTATTTAGTTAGAT-AAAGATCACAGCTGCAGATTTTCAAGT-AAAAAGACATCGCA-TGCGTCTTGGGGAAAAAGTG--CGACAGTCAATCAAGTTTT-TATTATA----ATGA-TTTC----AAT----A----------GATCT-ATTT-ACAAACAAACACATAT-T-------------T---GTTCTCAAATGATT-TTTTATT-TTCA--TCG-TAATTGAATAAT-AGTGTGAAACGTGTAA----AATAGA----T-GTTGTTACGGGTTACTAG----AGGTG-----------CTACT--C-TCGAGTTT-CCATTATA-------T-TGAGAGTAAA
gi|7 : ggattTGACTA----A--TGTAAC--AAATTTG-ACCGCCGTGGGGATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATAATGTTTCGGAAATT-CAAAAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGAGATG-A-CGTCAG-AGA-T-AA-CCGTGTT-CTAAAAATAGAATGATATT---TTCTTAGAAAAAT--GAATAAAATAGGGTCAAA-AAAC-ACATGTACCTTTGAATAAAACGACATTG-----C-AT-TATTTAATCTGAATTGCTAAATCTTATTGTGTATATAAATTAAT-AACAA-TTTTCAGTATC--TATTTTTTTTA-ATCACCAGGGAcaattccatgaattgacaattttccgaacatttgtatgtgtctctacctgggaatcgaatggtggctcataatgg
gi|8 : agtggagTGCTTTTAGAA--TGTAAC--AAATTTG-ACCGCGGTGGGAAATTTGTGAATGAGATACGCAAATGACCACTATA------AA-TGG---TTT-----CTTGATGATGTCTTAGAAATT-C--AAAA-A-GTTTGATAGACTTTTTTGATAGAGCGGCAGGTGC------GAGTTATG-G-AGT-AT-ATATT-GA-TCGTGTTGCTAAAAATG----GACATTAAATT-TCAAAATAGT---AAGAAAAT-CACTC--GAAAAC-A----TACCTTTAAATGAGAATAAATTG-----CAAT-TATTTAATCTGAAGTACTAAATTTTATTGTAT-----GATTAAT-AACAATTTTTTAGAAAC--TA----TTTTA-ATCAC
gi|9 : ggaagGTT-CTAAAAATA----TATATT---TTTTTGAAAAAATATGAATAAATGAGGGCT--G-AAATTA----TACCTTTGAATAAAATGAAATT-----------TGTTTGA----AGATG-TAAATCGTATTGTATATATCAATTA---AACAATTTTTCAGTACA--TAT---TTTTATATCACCA--------------------------CGGCT-CAAATTTC--AGTAAAAA-GATATC-CACTGCGCCT-GGAAAAAAAGTGGCC-ACAG-CAGGGAAGTTTC--AATACGA---A--A-TTTC----AAT----AAAATGCTAATGATTTCATTTTGCAAACAA-CAGACAT-AAA-T---ATATATT---TTTTTCGCTATATTAGTT-ATT-TTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAACAAATTCCATGAATGCACAATTCATACATTTATATGTGTCTCTCTACTTGGAATATGGTGGGCATAATGCA
Alignments
lowQualScore : 11 111111 11111 111111 1111 1111 1111 1111 11111111 1 1111 11 2222222 7777777777777777777777 111111111 111 11 1111 11111111 1111111 11 444444444
lowQualScore : 9999 66 22 4 7 0 7777 111111 4 777 11111 66 0 7777 4 4 5 0 444444 5 5 5 5 5 5 6 4444 2222 1 3 88888 11 3333 5 0000 44444444 4 1 0 2 4 0 66 5555 5 5 5 5 2 5 77 5 5 5 6 1 99 6 777777 00 7777777 6 3333333333333333333333 7 2 6 111111111 4 000 3 2 5 77 5 33 8 6 4444 99999999 6 3 6 99 6666666 22 3 333333333 0
lowQualScore : .... .. .. . . . .... ...... . ... ..... .. . .... . . . . ...... . . . . . . . .... .... . . ..... .. .... . .... ........ . . . . . . .. .... . . . . . . .. . . . . . .. . ...... .. ....... . ...................... . . . ......... . ... . . . .. . .. . . .... ........ . . . .. ....... .. . ......... .
lowQualScore : 4444 11 22 4 1 5 7777 555555 0 000 11111 11 1 9999 4 4 0 2 444444 0 0 7 7 7 7 7 2222 1111 4 0 99999 11 0000 0 6666 00000000 4 7 8 6 4 0 99 6666 0 7 7 7 7 7 99 7 7 7 7 7 22 7 222222 22 5555555 7 2222222222222222222222 5 5 7 888888888 9 000 1 2 0 44 7 66 0 7 2222 33333333 7 2 7 22 8888888 00 2 000000000 8
consensus : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAA-TGNTACGATCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
Reference ( family-2216 ) : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAA-TGNTACGATCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
gi|1 : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGTGGGAAATTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGCTATG-A-CGTCAT-AGA-T-AA-CCAAGTT-CTAAAAATA----GATAT----TTTCTTAGAAAAAT--T--AATAAAATATGGTC--A-AAAC-A----TGCCTTTGAATAAAACTAAATTG-----C-AT-TATTTGATCTAAAATGCTATATCTTATTGTATGTATTAATTAGT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TCAGAT-AAA-ATCACAGCT-CAGGTTTT--AGT-AAAA-GACATC-CACTGAATCT-AG-AAAAAAGTG--T-ACAG-CGGACATTTTTC-TAATATG----A--A-TTTC----G------A----------GATTTAATTTGACGAACAA-CAC--AT-TAT-TCGCATACATT---ATTTTCAAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCATTA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AA--------------TCGAGTTTTCCATTACATATGTATCATGAGAGTAAA
gi|10 : ACACATT---GTTTTCTAAAGATA-TTG-ATT-------------ATTGAACACTTACTGCGAAACGCGTAA----AA---G----TAGATGTTGCGGTACTGATT-TTAGATGTC-AAAAATTTTTACGATCTCGAATTTCCCATAAT--------CATGATAGTGAA
gi|11 : caTTTCGAA---TT-TTT-TTTATTCAAATCG-CAATTAAATAAA-AATGTCAAACGCGTAA----AA---A----T-GTTGTTACGTTACTAGTT-TTACATGTCAAAAAA-TGATACAATTTCGAGTTTCCCACTAC--------CAACAGAGTAAAcaaattccacgaatgcacactgattttcacatttatatgtgtctctctactgggaatgatggtgggcataa
gi|12 : gT----A--TGTAACTTGAATTTG-CAAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATATATATGAA-TGGGTTTTT-----TT--TTGGGGGGGGGGGGATTAA--AAAA-A-GCTTAATATAC--TTTTGATAATGCAGCAGGTGTTATAAATAGTTATG-A-CATCATAAGA-T-AA-taaattgcatcaatgcacaattttcacatttgtatgtgtccctctactgggaaggatggtaggcgtaatgc
gi|13 : tagaggagtttcttataATAAT-AATGTGAAACGCGAAA----AA---AAAAAT-AC-GTTACTTAACTGGTT-TAAGATGTC-AAAAA-TGATACAATCTCGATTTCCCCATTA-A-------CATGAGAGTA
gi|14 : AAAAGT--G--A-TAAAATAGGGCT--G-AAGC-A----TACCTACGAA---AACGAAATTGAATTAC-ATGTATTTAATTTGAAATACTAGATCGTATTGTATATATCAATTAAT-Atacaagttccatgaattcacacttttcacatttaaatgtgtccctctacctggtatgatggtggctataatgc
gi|15 : GGATTTCCTGAATAAA----G-AAACG------------------------TTT-----CT--ATGATGGTTTGGAAATT-C--AAAA-ACGTTTGATAAAC-CTTTTAATGATATGGCAGGTGC------GAGTTATG-A-TGT
gi|16 : TGCCTT----AAATGTAAT--A--TTTG-ACTGCCGTGGGAATTTTCTGAATAAA----TCAAACGACCATTGTG------AA-TAG---T
gi|17 : ttagtggagT----A--TGTAACTTGAATTTG-ACAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATgtttcgaatttttttta
gi|2 : ttttagaggagtttcttataTGCCTT----A--TGTAAC--AAATTTGGACCGCCG-GGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AAATGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATG-AACGTCAT-AAA-T-AAACCATGTT-CTTAAAATA----GATGT----TTTCTTACAAAAAT--G--AACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAA-CGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAAA-TACAA-TTTTCAGTATC--TA----TTTTA-ATCACC-GGAATATTTA-TTAGATAAAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGAGTCT-GGAAAAAAAGTG--C-ACAG-TGGACATTTTTC-AAATATG----A--ATTTTC----G------A----------GATTTAATTTGGCAAACAG-CACATAT-CAT-TCGCATACATT---ATTTTCAAAAGA-T-TTT-ATT-TTC
gi|3 : agtggagGCCGTGGGGATTTTCTAAATAAA----GCAAACGACCACTA--------AA-TGG---TTTTATTTCT--ATAATGTTTCGGAAATT-C--AAAAAA-GTTTGATAGAC-TTTTTGATAAAGCGGCAGGTGC------GAGTTGTA-A-CGCCAT-AGA-T-AA-C
gi|3 : AAACGAAATTA-----A-AT-TATTTGATTTGAAATGCTACATCGTATTGTATATATCAATTAAT-AATAA-CTTT-AGTACA--TA----TTTTA-ATCACCAGGAATATTCA-TTAGAT-AAA-ATCACAGTT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT-GCAGAAAAATTG--C------------AGCTTCATAAAATGCTAAG--A-TTTC-----------------------ATTTGATTTGACAAACAA-CACATAT-TAT-TCACATACAGTGGCATTTTCAAGAGATT-TTT--TT-TTCAA-TCGTTAACTGAATAAT-AATGTAAAAATCGTAAGAATAG---A----T-ATTGTTGCGTTACTGGTA-TTAGATGTA-AAAaaaacaaacgaaattaaattatttgatttgaaatgctacatcgtattgtatatatcaattaataataactttagtacatattttaatcaccaggaatattcattagataaaatcacagttcagatttcagtaaaagacatccactgcgtctgcagaaaaattgcagcttcataaaatgctaagatttcatttgatttgacaaacaacacatattattcacatacagtggcattttcaagagatttttttttcaatcgttaactgaataataatgtaaaaatcgtaagaatagatattgttgcgttactggtattagatgtaaaa
gi|4 : gccgtggggattttctaaataaagcaaacgaccactaaatggttttatttctataatgtttcggaaattcaaaaaagtttgatagactttttgataaagcggcaggtgcgagttgtaacgccatagataacaaaacTGCCTT----A--TGTAAC--AAATTTG-ACCGCCGGGGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAAAT-T--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATGAA-CGTCAT-AAA-TAAA-CCATGTT-CTTAAAATA----GATG-----TTTCTTACAAAAAT--G--AACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAATAAACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCG-CAGGTTTC--AGT-AAAA-GACATC-CACTG
gi|5 : agtggagTGCCGT----A--TGTAAC--AGATATG-ACCGCCGTAGGAATTTTCTGAATAAA----GCAAATGACCACTGTG------AA-TGG---TTT-----TT-----ATGTTTTGAAAGAT-G--AATA-A-ATTCGGT
gi|5 : agtggagATGT----TTT----GAAAGAT--G--AATAAATTCGGTTC--C-AAAC-A----TATGATTGAATAAAACAGG---------------ATTTGATTTGAGACGCTAG-----ATTG-------AAATTAAT-AATAA-TTTTCA--ATCCATA----TTTTA-ATCACCAAGGATATCTA-TTAGAT-ACA-CTCATAGCT-CAGATTGC--AGT-AAAA-GACATC-TACTGCGCCT-GGAAAAATAGTG--C-ACTG-CAGGTAAGATTT-T-ATATG----C--A-TATCATAAAATACCAA----------GATTTCATTTGACAAAAGA-TATACATGTATATCATCTACA-T---ATTTCCAGTGGATT-tccaaacatatgattgaataaaacaggatttgatttgagacgctagattgaaattaataataattttcaatccatattttaatcaccaaggatatctattagatacactcatagctcagattgcagtaaaagacatctactgcgcctggaaaaatagtgcactgcaggtaagattttatatgcatatcataaaataccaagatttcatttgacaaaagatatacatgtatatcatctacatatttccagtggatt
gi|6 : agtggagtgccgtatgtaacagatatgaccgccgtaggaattttctgaataaagcaaatgaccactgtgaatggtttttTATTTAGTTAGAT-AAAGATCACAGCTGCAGATTTTCAAGT-AAAAAGACATCGCA-TGCGTCTTGGGGAAAAAGTG--CGACAGTCAATCAAGTTTT-TATTATA----ATGA-TTTC----AAT----A----------GATCT-ATTT-ACAAACAAACACATAT-T-------------T---GTTCTCAAATGATT-TTTTATT-TTCA--TCG-TAATTGAATAAT-AGTGTGAAACGTGTAA----AATAGA----T-GTTGTTACG-----GGTTACTAGAGGT---------GCTAC--TCTCGAGTTT-CCATTATA-------T-TGAGAGTAAA
gi|7 : ggattTGACTA----A--TGTAAC--AAATTTG-ACCGCCGTGGGGATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATAATGTTTCGGAAATT-CAAAAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGAGATG-A-CGTCAG-AGA-T-AA-CCGTGTT-CTAAAAATAGAATGATAT----TTTCTTAGAAAAAT--G--AATAAAATAGGGTCAAA-AAAC-ACATGTACCTTTGAATAAAACGACATTG-----C-AT-TATTTAATCTGAATTGCTAAATCTTATTGTGTATATAAATTAAT-AACAA-TTTTCAGTATC--TATTTTTTTTA-ATCACCAGGGAcaattccatgaattgacaattttccgaacatttgtatgtgtctctacctgggaatcgaatggtggctcataatgg
gi|8 : agtggagTGCTTTTAGAA--TGTAAC--AAATTTG-ACCGCGGTGGGAAATTTGTGAATGAGATACGCAAATGACCACTATA------AA-TGG---TTT-----CTTGATGATGTCTTAGAAATT-C--AAAA-A-GTTTGATAGACTTTTTTGATAGAGCGGCAGGTGC------GAGTTATG-G-AGT-AT-ATATT-GA-TCGTGTTGCTAAAAATG----GACATTAAATTTC-----AAAAT--AGTAAGAAAAT-CACTC--GAAAAC-A----TACCTTTAAATGAGAATAAATTG-----CAAT-TATTTAATCTGAAGTACTAAATTTTATTGTAT-----GATTAAT-AACAATTTTTTAGAAAC--TA----TTTTA-ATCAC
gi|9 : ggaagGTT-CTAAAAATA----TATAT----TTTTTTGAAAAAATATG--AATAAATGAGGGCT--G-AAATTA----TACCTTTGAATAAAATGAAATT-----------TGTTTGA----AGATG-TAAATCGTATTGTATATATCAATTA---AACAATTTTTCAGTACA--TAT---TTTTATATCACCA--------------------------CGGCT-CAAATTTC--AGTAAAAA-GATATC-CACTGCGCCT-GGAAAAAAAGTGGCC-ACAG-CAGGGAAGTTTC--AATACGA---A--A-TTTC----AAT----AAAATGCTAATGATTTCATTTTGCAAACAA-CAGACAT-AAA-T---ATATATT---TTTTTCGCTATATTAGTT-ATT-TTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAACAAATTCCATGAATGCACAATTCATACATTTATATGTGTCTCTCTACTTGGAATATGGTGGGCATAATGCA
Alignments
lowQualScore : 11 111111 11111 111111 1111 1111 1111 1111 11111111 1 1111 11 2222222 7777777777777777777777 111111111 111 11 1111 11111111 1111111 11 444444444
lowQualScore : 9999 66 22 4 7 0 7777 111111 4 777 11111 66 0 7777 4 4 5 0 444444 5 5 5 5 5 5 6 4444 2222 1 3 88888 11 3333 5 0000 44444444 4 1 0 2 4 0 66 5555 5 5 5 5 2 5 77 5 5 5 6 1 99 6 777777 00 7777777 6 3333333333333333333333 7 2 6 111111111 4 000 3 2 5 77 5 33 8 6 4444 99999999 6 3 6 99 6666666 22 3 333333333 0
lowQualScore : .... .. .. . . . .... ...... . ... ..... .. . .... . . . . ...... . . . . . . . .... .... . . ..... .. .... . .... ........ . . . . . . .. .... . . . . . . .. . . . . . .. . ...... .. ....... . ...................... . . . ......... . ... . . . .. . .. . . .... ........ . . . .. ....... .. . ......... .
lowQualScore : 4444 11 22 4 1 5 7777 555555 0 000 11111 11 1 9999 4 4 0 2 444444 0 0 7 7 7 7 7 2222 1111 4 0 99999 11 0000 0 6666 00000000 4 7 8 6 4 0 99 6666 0 7 7 7 7 7 99 7 7 7 7 7 22 7 222222 22 5555555 7 2222222222222222222222 5 5 7 888888888 9 000 1 2 0 44 7 66 0 7 2222 33333333 7 2 7 22 8888888 00 2 000000000 8
consensus : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAA-TGNTACGATCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
Reference ( family-2216 ) : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAA-TGNTACGATCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
gi|1 : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGTGGGAAATTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGCTATG-A-CGTCAT-AGA-T-AA-CCAAGTT-CTAAAAATA----GATAT----TTTCTTAGAAAAAT--T--AATAAAATATGGTC--A-AAAC-A----TGCCTTTGAATAAAACTAAATTG-----C-AT-TATTTGATCTAAAATGCTATATCTTATTGTATGTATTAATTAGT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TCAGAT-AAA-ATCACAGCT-CAGGTTTT--AGT-AAAA-GACATC-CACTGAATCT-AG-AAAAAAGTG--T-ACAG-CGGACATTTTTC-TAATATG----A--A-TTTC----G------A----------GATTTAATTTGACGAACAA-CAC--AT-TAT-TCGCATACATT---ATTTTCAAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCATTA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AA--------------TCGAGTTTTCCATTACATATGTATCATGAGAGTAAA
gi|10 : ACACATT---GTTTTCTAAAGATA-TTG-ATT-------------ATTGAACACTTACTGCGAAACGCGTAA----AA---G----TAGATGTTGCGGTACTGATT-TTAGATGTC-AAAAATTTTTACGATCTCGAATTTCCCATAAT--------CATGATAGTGAA
gi|11 : caTTTCGAA---TT-TTT-TTTATTCAAATCG-CAATTAAATAAA-AATGTCAAACGCGTAA----AA---A----T-GTTGTTACGTTACTAGTT-TTACATGTCAAAAAA-TGATACAATTTCGAGTTTCCCACTAC--------CAACAGAGTAAAcaaattccacgaatgcacactgattttcacatttatatgtgtctctctactgggaatgatggtgggcataa
gi|12 : gT----A--TGTAACTTGAATTTG-CAAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATATATATGAA-TGGGTTTTT-----TT--TTGGGGGGGGGGGGATTAA--AAAA-A-GCTTAATATAC--TTTTGATAATGCAGCAGGTGTTATAAATAGTTATG-A-CATCATAAGA-T-AA-taaattgcatcaatgcacaattttcacatttgtatgtgtccctctactgggaaggatggtaggcgtaatgc
gi|13 : tagaggagtttcttataATAAT-AATGTGAAACGCGAAA----AA---AAAAAT-AC-GTTACTTAACTGGTT-TAAGATGTC-AAAAA-TGATACAATCTCGATTTCCCCATTA-A-------CATGAGAGTA
gi|14 : AAAAGT--G--A-TAAAATAGGGCT--G-AAGC-A----TACCTACGAA---AACGAAATTGAATTAC-ATGTATTTAATTTGAAATACTAGATCGTATTGTATATATCAATTAAT-Atacaagttccatgaattcacacttttcacatttaaatgtgtccctctacctggtatgatggtggctataatgc
gi|15 : GGATTTCCTGAATAAA----G-AAACG------------------------TTT-----CT--ATGATGGTTTGGAAATT-C--AAAA-ACGTTTGATAAAC-CTTTTAATGATATGGCAGGTGC------GAGTTATG-A-TGT
gi|16 : TGCCTT----AAATGTAAT--A--TTTG-ACTGCCGTGGGAATTTTCTGAATAAA----TCAAACGACCATTGTG------AA-TAG---T
gi|17 : ttagtggagT----A--TGTAACTTGAATTTG-ACAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATgtttcgaatttttttta
gi|2 : ttttagaggagtttcttataTGCCTT----A--TGTAAC--AAATTTGGACCGCCG-GGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AAATGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATG-AACGTCAT-AAA-T-AAACCATGTT-CTTAAAATA----GATGT----TTTCTTACAAAAAT--G--AACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAA-CGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAAA-TACAA-TTTTCAGTATC--TA----TTTTA-ATCACC-GGAATATTTA-TTAGATAAAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGAGTCT-GGAAAAAAAGTG--C-ACAG-TGGACATTTTTC-AAATATG----A--ATTTTC----G------A----------GATTTAATTTGGCAAACAG-CACATAT-CAT-TCGCATACATT---ATTTTCAAAAGA-T-TTT-ATT-TTC
gi|3 : agtggagGCCGTGGGGATTTTCTAAATAAA----GCAAACGACCACTA--------AA-TGG---TTTTATTTCT--ATAATGTTTCGGAAATT-C--AAAAAA-GTTTGATAGAC-TTTTTGATAAAGCGGCAGGTGC------GAGTTGTA-A-CGCCAT-AGA-T-AA-C
gi|3 : AAACGAAATTA-----A-AT-TATTTGATTTGAAATGCTACATCGTATTGTATATATCAATTAAT-AATAA-CTTT-AGTACA--TA----TTTTA-ATCACCAGGAATATTCA-TTAGAT-AAA-ATCACAGTT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT-GCAGAAAAATTG--C------------AGCTTCATAAAATGCTAAG--A-TTTC-----------------------ATTTGATTTGACAAACAA-CACATAT-TAT-TCACATACAGTGGCATTTTCAAGAGATT-TTT--TT-TTCAA-TCGTTAACTGAATAAT-AATGTAAAAATCGTAAGAATAG---A----T-ATTGTTGCGTTACTGGTA-TTAGATGTA-AAAaaaacaaacgaaattaaattatttgatttgaaatgctacatcgtattgtatatatcaattaataataactttagtacatattttaatcaccaggaatattcattagataaaatcacagttcagatttcagtaaaagacatccactgcgtctgcagaaaaattgcagcttcataaaatgctaagatttcatttgatttgacaaacaacacatattattcacatacagtggcattttcaagagatttttttttcaatcgttaactgaataataatgtaaaaatcgtaagaatagatattgttgcgttactggtattagatgtaaaa
gi|4 : gccgtggggattttctaaataaagcaaacgaccactaaatggttttatttctataatgtttcggaaattcaaaaaagtttgatagactttttgataaagcggcaggtgcgagttgtaacgccatagataacaaaacTGCCTT----A--TGTAAC--AAATTTG-ACCGCCGGGGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAAAT-T--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATGAA-CGTCAT-AAA-TAAA-CCATGTT-CTTAAAATA----GATG-----TTTCTTACAAAAAT--G--AACAAAATATGGTC--A-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAATAAACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCG-CAGGTTTC--AGT-AAAA-GACATC-CACTG
gi|5 : agtggagTGCCGT----A--TGTAAC--AGATATG-ACCGCCGTAGGAATTTTCTGAATAAA----GCAAATGACCACTGTG------AA-TGG---TTT-----TT-----ATGTTTTGAAAGAT-G--AATA-A-ATTCGGT
gi|5 : agtggagATGT----TTT----GAAAGAT--G--AATAAATTCGGTTC--C-AAAC-A----TATGATTGAATAAAACAGG---------------ATTTGATTTGAGACGCTAG-----ATTG-------AAATTAAT-AATAA-TTTTCA--ATCCATA----TTTTA-ATCACCAAGGATATCTA-TTAGAT-ACA-CTCATAGCT-CAGATTGC--AGT-AAAA-GACATC-TACTGCGCCT-GGAAAAATAGTG--C-ACTG-CAGGTAAGATTT-T-ATATG----C--A-TATCATAAAATACCAA----------GATTTCATTTGACAAAAGA-TATACATGTATATCATCTACA-T---ATTTCCAGTGGATT-tccaaacatatgattgaataaaacaggatttgatttgagacgctagattgaaattaataataattttcaatccatattttaatcaccaaggatatctattagatacactcatagctcagattgcagtaaaagacatctactgcgcctggaaaaatagtgcactgcaggtaagattttatatgcatatcataaaataccaagatttcatttgacaaaagatatacatgtatatcatctacatatttccagtggatt
gi|6 : agtggagtgccgtatgtaacagatatgaccgccgtaggaattttctgaataaagcaaatgaccactgtgaatggtttttTATTTAGTTAGAT-AAAGATCACAGCTGCAGATTTTCAAGT-AAAAAGACATCGCA-TGCGTCTTGGGGAAAAAGTG--CGACAGTCAATCAAGTTTT-TATTATA----ATGA-TTTC----AAT----A----------GATCT-ATTT-ACAAACAAACACATAT-T-------------T---GTTCTCAAATGATT-TTTTATT-TTCA--TCG-TAATTGAATAAT-AGTGTGAAACGTGTAA----AATAGA----T-GTTGTTACG-----GGTTACTAGAGGT---------GCTAC--TCTCGAGTTT-CCATTATA-------T-TGAGAGTAAA
gi|7 : ggattTGACTA----A--TGTAAC--AAATTTG-ACCGCCGTGGGGATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATAATGTTTCGGAAATT-CAAAAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGAGATG-A-CGTCAG-AGA-T-AA-CCGTGTT-CTAAAAATAGAATGATAT----TTTCTTAGAAAAAT--G--AATAAAATAGGGTCAAA-AAAC-ACATGTACCTTTGAATAAAACGACATTG-----C-AT-TATTTAATCTGAATTGCTAAATCTTATTGTGTATATAAATTAAT-AACAA-TTTTCAGTATC--TATTTTTTTTA-ATCACCAGGGAcaattccatgaattgacaattttccgaacatttgtatgtgtctctacctgggaatcgaatggtggctcataatgg
gi|8 : agtggagTGCTTTTAGAA--TGTAAC--AAATTTG-ACCGCGGTGGGAAATTTGTGAATGAGATACGCAAATGACCACTATA------AA-TGG---TTT-----CTTGATGATGTCTTAGAAATT-C--AAAA-A-GTTTGATAGACTTTTTTGATAGAGCGGCAGGTGC------GAGTTATG-G-AGT-AT-ATATT-GA-TCGTGTTGCTAAAAATG----GACATTAAATTTC-----AAAAT--AGTAAGAAAAT-CACTC--GAAAAC-A----TACCTTTAAATGAGAATAAATTG-----CAAT-TATTTAATCTGAAGTACTAAATTTTATTGTAT-----GATTAAT-AACAATTTTTTAGAAAC--TA----TTTTA-ATCAC
gi|9 : ggaagGTT-CTAAAAATA----TATAT----TTTTTTGAAAAAATATG--AATAAATGAGGGCT--G-AAATTA----TACCTTTGAATAAAATGAAATT-----------TGTTTGA----AGATG-TAAATCGTATTGTATATATCAATTA---AACAATTTTTCAGTACA--TAT---TTTTATATCACCA--------------------------CGGCT-CAAATTTC--AGTAAAAA-GATATC-CACTGCGCCT-GGAAAAAAAGTGGCC-ACAG-CAGGGAAGTTTC--AATACGA---A--A-TTTC----AAT----AAAATGCTAATGATTTCATTTTGCAAACAA-CAGACAT-AAA-T---ATATATT---TTTTTCGCTATATTAGTT-ATT-TTt
blockSeqs : TAGA AA TT G C ATAC TATATG A GTT TATTT TG CAA A C T TATAAA A A A T A A G GAAT TAAA T C AGT AG AAA T CATG GAATTAC G G C A T CA TTTT T G A G G G CA A A G T A GC G TCAATC AT CTAAG T AATAAAATGCTAAT A G A GTATATCAT T GGC T A A TA A AA T T GAAT AAAAA A G A CA AAATTTT GA C TA
blockSeqs : . . TT . T . . . . . . AA . . . . . . . . . . . . . T C ATG AT GA . . GCA . T A . T . T . . . . A . . . . . . A . . TGGAC A ATG . ATAAAATACCAA G G . CATTCGC T . G A . A . A . . . TAGA . T . C AAATGA AA C T
blockSeqs : . . . . C . . . . . . C . . . . . . . . . . . . . T G G AT G . . GC . G C . . . . . . . . G . . . . . . A . . CAGGT T AA . AATA C G . TATTCAC G . A A . T . . . . . G . T . C AAATGA AA C C
blockSeqs : . . . . T . . . . . . C . . . . . . . . . . . . . T G G CG A . . AA . T A . . . . . . . . A . . . . . . G . . CAGGG T A . GA C T . AAAT T . A G . A . . . . . A . T . A GC . . A
blockSeqs : . . . . G . . . . . . C . . . . . . . . . . . . . . A G AG A . . GC . T A . . . . . . . . A . . . . . . A . . . . C . . . . . T . . A T . A . . . A . . . .
blockSeqs : . . . . T . . . . . . T . . . . . . . . . . . . . G AG C . . GC . T A . . . . . . . . . . . . . . . . A A . . .
blockSeqs : . . . . T . . . . . . G . . . . . . G C G . . . . G C . . . . . G . .
blockSeqs : . . . . T . . . . . . C . . . . . . .
blockSeqs : . . . . .
blockSeqs : .
blockSeqCons : AATA****************** A* AAATGN* AA N********
originalCons : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAA-TGNTACGATCTCGAGTTTCCCATTACA-------CATGAGAGTAAA
finalCons : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAAAT--G--AATAAAATANGGTC--G-AAAC-A----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTCAATA------------------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAATGN-TACAATCTCGAGTTTCCCATTAN--------CATGAGAGTAAA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAACAAATTCCATGAATGCACAATTCATACATTTATATGTGTCTCTCTACTTGGAATATGGTGGGCATAATGCA
Alignments
lowQualScore : 11 111111 11111 111111 1111 1111 1111 1111 1111111 1 1111 11 2222222 7777777777777777777777 111111111 111 11 1111 11111111 333333333
lowQualScore : 9999 66 22 4 7 0 7777 111111 4 777 11111 66 0 7777 4 4 5 0 444444 5 5 5 5 5 5 6 4444 2222 1 3 66 66 11 3333 5 0000 3333333 4 1 0 2 4 0 66 5555 5 5 5 5 2 5 77 5 5 5 6 99 6 777777 00 7777777 6 1111111111111111111111 7 2 6 111111111 4 000 3 2 5 77 5 33 8 6 4444 99999999 6 3 6 6 444 3 8 99 3 000000000
lowQualScore : .... .. .. . . . .... ...... . ... ..... .. . .... . . . . ...... . . . . . . . .... .... . . .. .. .. .... . .... ....... . . . . . . .. .... . . . . . . .. . . . . .. . ...... .. ....... . ...................... . . . ......... . ... . . . .. . .. . . .... ........ . . . . ... . . .. . .........
lowQualScore : 4444 11 22 4 1 5 7777 555555 0 000 11111 11 1 9999 4 4 0 2 444444 0 0 7 7 7 7 7 2222 1111 4 0 99 99 11 0000 0 6666 9999999 4 7 8 6 4 0 99 6666 0 7 7 7 7 7 99 7 7 7 7 22 7 222222 22 5555555 7 0000000000000000000000 5 5 7 888888888 9 000 1 2 0 44 7 66 0 7 2222 33333333 7 2 7 7 444 8 0 22 2 000000000
consensus : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAA--ATG--AATAAAATANGGTC--G-AAA-CA----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----GAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAATGNT-ACGATCTCGAGTTTCCCATTAC--------CATGAGAGTAAA
Reference ( family-2216 ) : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGCGGGAATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGGAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGTTATG-A-CGTCAT-AGA-T-AA-CCGTGTT-CTAAAAATA----GATGT----TTTCTTAGAAAA--ATG--AATAAAATANGGTC--G-AAA-CA----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTGAAATGCTAAATCTTATTGTATATATNAATTAAT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGCGTCT-GGAAAAAAAGTG--C-ACAG-CGGGCAAGTTTC-TAATATG----A--A-TTTC----AAT----A----------GATTTNATTTGACAAACAA-CACATAT-TAT-TCGCATACATT---ATTTTCGAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCGTAA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AAAAATGNT-ACAATCTCGAGTTTCCCATTAN--------CATGAGAGTAAA
gi|1 : TGCCTT----A--TGTAAC--AAATTTG-ACCGCCGTGGGAAATTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGCTATG-A-CGTCAT-AGA-T-AA-CCAAGTT-CTAAAAATA----GATAT----TTTCTTAGAAAA--ATT--AATAAAATATGGTC--A-AAA-CA----TGCCTTTGAATAAAACTAAATTG-----C-AT-TATTTGATCTAAAATGCTATATCTTATTGTATGTATTAATTAGT-AACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TCAGAT-AAA-ATCACAGCT-CAGGTTTT--AGT-AAAA-GACATC-CACTGAATCT-AGAAAAAA-GTG--T-ACAG-CGGACATTTTTC-TAATATG----A--A-TTTC----GA----------------GATTTAATTTGACGAACAA-CACAT---TAT-TCGCATACATT---ATTTTCAAAAGATT-TTT-ATT-TTCAA-TCG-TAATTGAATAAT-AATGTGAAACGCATTA----AA---A----T-GTTGTTACGTTACTGGTT-TTAGATGTC-AA--------------TCGAGTTTTCCATTACATATGTATCATGAGAGTAAA
gi|10 : ACACATT---GTTTTCTAAAGATA-TTG-ATT-------------ATTGAACACTTACTGCGAAACGCGTAA----AA---G----TAGATGTTGCGGTACTGATT-TTAGATGTC-AAAAATTTTTACGATCTCGAATTTCCCATAAT--------CATGATAGTGAA
gi|11 : caTTTCGAA---TT-TTT-TTTATTCAAATCG-CAATTAAATAAA-AATGTCAAACGCGTAA----AA---A----T-GTTGTTACGTTACTAGTT-TTACATGTCAAAAAATGAT-ACAATTTCGAGTTTCCCACTAC--------CAACAGAGTAAAcaaattccacgaatgcacactgattttcacatttatatgtgtctctctactgggaatgatggtgggcataa
gi|12 : gT----A--TGTAACTTGAATTTG-CAAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATATATATGAA-TGGGTTTTT-----TT--TTGGGGGGGGGGGGATTAA--AAAA-A-GCTTAATATAC--TTTTGATAATGCAGCAGGTGTTATAAATAGTTATG-A-CATCATAAGA-T-AA-taaattgcatcaatgcacaattttcacatttgtatgtgtccctctactgggaaggatggtaggcgtaatgc
gi|13 : tagaggagtttcttataATAAT-AATGTGAAACGCGAAA----AA---AAAAAT-AC-GTTACTTAACTGGTT-TAAGATGTC-AAAAATGAT-ACAATCTCGATTTCCCCATTAA--------CATGAGAGTA
gi|14 : AAAA--GTG--A-TAAAATAGGGCT--G-AAG-CA----TACCTACGAA---AACGAAATTGAATTAC-ATGTATTTAATTTGAAATACTAGATCGTATTGTATATATCAATTAAT-Atacaagttccatgaattcacacttttcacatttaaatgtgtccctctacctggtatgatggtggctataatgc
gi|15 : GGATTTCCTGAATAAA----G-AAACG------------------------TTT-----CT--ATGATGGTTTGGAAATT-C--AAAA-ACGTTTGATAAAC-CTTTTAATGATATGGCAGGTGC------GAGTTATG-A-TGT
gi|16 : TGCCTT----AAATGTAAT--A--TTTG-ACTGCCGTGGGAATTTTCTGAATAAA----TCAAACGACCATTGTG------AA-TAG---T
gi|17 : ttagtggagT----A--TGTAACTTGAATTTG-ACAGTCACAGGAATTTTCTTAATAAA----GCAAATGACCACTATgtttcgaatttttttta
gi|2 : ttttagaggagtttcttataTGCCTT----A--TGTAAC--AAATTTGGACCGCCG-GGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AAATGG---TTT-----CT--ATGATGTTTCGTAAATT-C--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATG-AACGTCAT-AAA-T-AAACCATGTT-CTTAAAATA----GATGT----TTTCTTACAAAA--ATG--AACAAAATATGGTC--A-AAA-CA----TACCTTTGAATAAA-CGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAAA-TACAA-TTTTCAGTATC--TA----TTTTA-ATCACC-GGAATATTTA-TTAGATAAAA-ATCGCAGCT-CAGGTTTC--AGT-AAAA-GACATC-CACTGAGTCT-GGAAAAAAAGTG--C-ACAG-TGGACATTTTTC-AAATATG----A--ATTTTC----G------A----------GATTTAATTTGGCAAACAG-CACATAT-CAT-TCGCATACATT---ATTTTCAAAAGA-T-TTT-ATT-TTC
gi|3 : agtggagGCCGTGGGGATTTTCTAAATAAA----GCAAACGACCACTA--------AA-TGG---TTTTATTTCT--ATAATGTTTCGGAAATT-C--AAAAAA-GTTTGATAGAC-TTTTTGATAAAGCGGCAGGTGC------GAGTTGTA-A-CGCCAT-AGA-T-AA-C
gi|3 : AAACGAAATTA-----A-AT-TATTTGATTTGAAATGCTACATCGTATTGTATATATCAATTAAT-AATAA-CTTT-AGTACA--TA----TTTTA-ATCACCAGGAATATTCA-TTAGAT-AAA-ATCACAGTT-CAGATTTC--AGT-AAAA-GACATC-CACTGCGTCT-GCAGAAAAATTG--C------------AGCTTCATAAAATGCTAAG--A-TTTC-----------------------ATTTGATTTGACAAACAA-CACATAT-TAT-TCACATACAGTGGCATTTTCAAGAGATT-TTT--TT-TTCAA-TCGTTAACTGAATAAT-AATGTAAAAATCGTAAGAATAG---A----T-ATTGTTGCGTTACTGGTA-TTAGATGTA-AAAaaaacaaacgaaattaaattatttgatttgaaatgctacatcgtattgtatatatcaattaataataactttagtacatattttaatcaccaggaatattcattagataaaatcacagttcagatttcagtaaaagacatccactgcgtctgcagaaaaattgcagcttcataaaatgctaagatttcatttgatttgacaaacaacacatattattcacatacagtggcattttcaagagatttttttttcaatcgttaactgaataataatgtaaaaatcgtaagaatagatattgttgcgttactggtattagatgtaaaa
gi|4 : gccgtggggattttctaaataaagcaaacgaccactaaatggttttatttctataatgtttcggaaattcaaaaaagtttgatagactttttgataaagcggcaggtgcgagttgtaacgccatagataacaaaacTGCCTT----A--TGTAAC--AAATTTG-ACCGCCGGGGGAATTTTTTTAATAAA----GCAAACAACCACTATA------AA-TGG---TTT-----CT--ATGATGTTTCGTAAAAT-T--AAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGAGT------GAGTTATGAA-CGTCAT-AAA-TAAA-CCATGTT-CTTAAAATA----GATG-----TTTCTTACAAAA--ATG--AACAAAATATGGTC--A-AAA-CA----TACCTTTGAATAAAACGAAATTG-----C-AT-TATTTGATCTAAAATGCTAAATCTTATTGTATATATAAATTAATAAACAA-TTTTCAGTATC--TA----TTTTA-ATCACCAGGAATATTTA-TTAGAT-AAA-ATCGCAGCG-CAGGTTTC--AGT-AAAA-GACATC-CACTG
gi|5 : agtggagTGCCGT----A--TGTAAC--AGATATG-ACCGCCGTAGGAATTTTCTGAATAAA----GCAAATGACCACTGTG------AA-TGG---TTT-----TT-----ATGTTTTGAAAGAT-G--AATA-A-ATTCGGT
gi|5 : agtggagATGT----TTT----GAAAG--ATG--AATAAATTCGGTTC--C-AAA-CA----TATGATTGAATAAAACAGG---------------ATTTGATTTGAGACGCTAG-----ATTG-------AAATTAAT-AATAA-TTTTCA--ATCCATA----TTTTA-ATCACCAAGGATATCTA-TTAGAT-ACA-CTCATAGCT-CAGATTGC--AGT-AAAA-GACATC-TACTGCGCCT-GGAAAAATAGTG--C-ACTG-CAGGTAAGATTT-T-ATATG----C--A-TATCATAAAATACCAA----------GATTTCATTTGACAAAAGA-TATACATGTATATCATCTACA-T---ATTTCCAGTGGATT-tccaaacatatgattgaataaaacaggatttgatttgagacgctagattgaaattaataataattttcaatccatattttaatcaccaaggatatctattagatacactcatagctcagattgcagtaaaagacatctactgcgcctggaaaaatagtgcactgcaggtaagattttatatgcatatcataaaataccaagatttcatttgacaaaagatatacatgtatatcatctacatatttccagtggatt
gi|6 : agtggagtgccgtatgtaacagatatgaccgccgtaggaattttctgaataaagcaaatgaccactgtgaatggtttttTATTTAGTTAGAT-AAAGATCACAGCTGCAGATTTTCAAGT-AAAAAGACATCGCA-TGCGTCTTGGGGAAAAAGTG--CGACAGTCAATCAAGTTTT-TATTATA----ATGA-TTTC----AAT----A----------GATCT-ATTT-ACAAACAAACACATAT-T-------------T---GTTCTCAAATGATT-TTTTATT-TTCA--TCG-TAATTGAATAAT-AGTGTGAAACGTGTAA----AATAGA----T-GTTGTTACG-----GGTTACTAGAGG--------TGCT-AC--TCTCGAGTTT-CCATTAT--------ATTGAGAGTAAA
gi|7 : ggattTGACTA----A--TGTAAC--AAATTTG-ACCGCCGTGGGGATTTTCTGAATAAA----GCAAACGACCACTATA------AA-TGG---TTT-----CT--ATAATGTTTCGGAAATT-CAAAAAA-A-GTTTGATAGAC-TTTTTGATAACGCGGCAGGTGC------GAGAGATG-A-CGTCAG-AGA-T-AA-CCGTGTT-CTAAAAATAGAATGATAT----TTTCTTAGAAAA--ATG--AATAAAATAGGGTCAAA-AAA-CACATGTACCTTTGAATAAAACGACATTG-----C-AT-TATTTAATCTGAATTGCTAAATCTTATTGTGTATATAAATTAAT-AACAA-TTTTCAGTATC--TATTTTTTTTA-ATCACCAGGGAcaattccatgaattgacaattttccgaacatttgtatgtgtctctacctgggaatcgaatggtggctcataatgg
gi|8 : agtggagTGCTTTTAGAA--TGTAAC--AAATTTG-ACCGCGGTGGGAAATTTGTGAATGAGATACGCAAATGACCACTATA------AA-TGG---TTT-----CTTGATGATGTCTTAGAAATT-C--AAAA-A-GTTTGATAGACTTTTTTGATAGAGCGGCAGGTGC------GAGTTATG-G-AGT-AT-ATATT-GA-TCGTGTTGCTAAAAATG----GACATTAAATTTC-----AAA--ATAGTAAGAAAAT-CACTC--GAAAA-CA----TACCTTTAAATGAGAATAAATTG-----CAAT-TATTTAATCTGAAGTACTAAATTTTATTGTAT-----GATTAAT-AACAATTTTTTAGAAAC--TA----TTTTA-ATCAC
gi|9 : ggaagGTT-CTAAAAATA----TATAT----TTTTTTGAAAAAATATG--AATAAATGAGGGCT--G-AAATTA----TACCTTTGAATAAAATGAAAT----------T-TGTTTGA----AGATG-TAAATCGTATTGTATATATCAATTA---AACAATTTTTCAGTACA--TAT---TTTTATATCACCA--------------------------CGGCT-CAAATTTC--AGTAAAAA-GATATC-CACTGCGCCT-GGAAAAAAAGTGGCC-ACAG-CAGGGAAGTTTC--AATACGA---A--A-TTTC----AAT----AAAATGCTAATGATTTCATTTTGCAAACAA-CAGACAT-AAA-T---ATATATT---TTTTTCGCTATATTAGTT-ATT-TTt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|18 ): TAACAAATTCCATGAATGCACAATTCATACATTTATATGTGTCTCTCTACTTGGAATATGGTGGGCATAATGCA