lowQualScore : 11111111111111111111111111 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 11111111111111111111111111111111111111111
lowQualScore : 11 444 7777777777777 22 1 99999999999999999999999999 2 6666666 22222222 22222222 55555555555555555555555555555555 11 222 2 7777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 3333333333 22 1 2222222 44444 1 1 1 1 55 1 22 4 2 333 55555555 22 333333 11 1 66666666666666666666666666666666 2222 222 1 11 11 1 22222 555555 2 22 333333333333 222 22222 3333333333 1 444444 555555 66666666666666666666666666 1 2 1 6666666666666 1 111 22222222222222222222222222222222222222222 11 222222222222222 3 2222 1
lowQualScore : 00 111 77 6666666666666 77 2 5 44444444444444444444444444 6 0 4444444 77777777 00000000 2 3 22222222222222222222222222222222 0 44 55 999 333 8 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 9999999999 6 44 0 7 3333333 3 3 66666 3 2 3 6 55 5 33 0 6 0 555 88888888 77 555555 88 2 77777777777777777777777777777777 1111 333 3 7 7 88 88 3 6 22222 222222 8 00 333333333333 0 333 11111 2222222222 3 000000 777777 66666666666666666666666666 3 6 3 1111111111111 3 777 55555555555555555555555555555555555555555 88 999999999999999 2 1 8888 5
lowQualScore : .. ... .. ............. .. . . .......................... . . ....... ........ ........ . . ................................ . .. .. ... ... . .......................................................................................................................................................................................................................................................................................................................................................................................................................................................... .......... . .. . . ....... . . ..... . . . . .. . .. . . . ... ........ .. ...... .. . ................................ .... ... . . . .. .. . . ..... ...... . .. ............ . ... ..... .......... . ...... ...... .......................... . . . ............. . ... ......................................... .. ............... . . .... .
lowQualScore : 00 000 00 5555555555555 55 5 5 55555555555555555555555555 0 0 5555555 00000000 22222222 5 2 00000000000000000000000000000000 2 55 88 777 333 7 2222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 8888888888 5 55 0 8 0000000 0 0 77777 3 0 3 0 00 0 00 0 0 0 000 00000000 55 000000 33 0 33333333333333333333333333333333 7777 333 3 3 3 33 33 3 7 00000 777777 7 33 777777777777 7 333 00000 7777777777 3 000000 555555 33333333333333333333333333 3 7 3 0000000000000 3 777 99999999999999999999999999999999999999999 88 555555555555555 5 5 3333 0
consensus : TCTTTNCCGTTCCAAAGTNNCCT--GGCTCCCTGCTCGTGTTACTGNTCTTAGTTATA-------AAGTTAAGTNTCATTNNTCACTGTAACCCAGCATTGTTGGAGG-TCAGTCATCTCATNNACNAGCAAGTTCCCCT-CTTTATTNCTCCGCAGATTTG--T-ATGT-NTTGTCCC------A--G-TTGTCATTTCCATTCTGACGA-TGATTTC---TCTGAG-AATTCT-T-G---TGGA--TTTTTCCGTGATTGN---TG-GTAC-G---TCGA-TAAAAT-GCCTGA-T-A---GTCTCAGGGTAT-T-A-C--AA--G-GGA-T-TCTTGAGACCTGATCGCTGCATGTAATGCTGCTNAATTGGTT-GTTGATAT-AAACTCT---C--GTG--TT-G-AATAG-TNTCTTTGGAGCGATGGAAGG-TGCATC--AGCTTTTGCATACATGNNTTCNTTTATNTCGTGTGTCTGTCTGATTATNTNTGACTGACT-AGNNCATCTAAGGCTTGTNTCTATCAATTATGTTTGTTCATTTCGTCATTNTAAACCGAGGATAAGANCAAATCGTCGAACAGCTGNCTCCTCCACNAGAGTGTATTATGATGATNTACAAGNGTATGCTCGTGAGTAATTGTGTCTCGGTGACCATCGACA--------GGCTGTTG--T------TGCTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGNTTTGCCATTCAAGTANANTGCC-----AG-GAATACAGGTA-AG-TTCA--GTTTTGTCAGACTTAGTAATTGTTGTGAAATCCTAACCNNCTTTTTCCGCTAAGCCTATTATCTGA--GAAGAGTCATTG--------TAGN-GAATA---AACT--GC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGTTTTCATAATT-GCT-AGCAG---A--AGCAG-ATTGA-GTTTTGC----TTG-----GCAGGAT---ATG-C-T-TTT----GAAGT-TCC-TGTAACTTGNGTCACCTTAAAAATTCTTCTAACAT---AT----ACTCA-----T---TTGATTCCTC-AATTTCAGTTT-GTAT-CT-TT------TCT-TCAT-T-GGTTA--------ATCC--CTCTAG-------AT---ATATC----TGTTGTTGATTTTCTCCA------ATA-G----ACCCTGTTTCTC-TTGTAG----TACATTCACCATTTCA
Reference ( gi|2 ) : TTTTTTTTGTTTCAAAGTTTCCTTTGGTTTACTTCTTGTGTTA--GCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGT-TTTGTCCC------A--G-T-GTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTCT-TGG---TGCAATTTTTTTCATGATTGC---TGAGTACAACTACTAATTAAAAT-GCCTGAAT-A---GTCTCAGGGTAT-G-A-C--AA--G-GGA---TCT--AGA-CTA----C--CATGTA-TG-T-CTCAAT--GTTCGTGGATAT-AAACTCT---C--GTG--TTTGGAATA--TTTCTTTGGAGT--TGGAAGGATCCATTCAAGCTTTTGCAT-TATGCATTCG-TTATTTTGTGGGTTTGTCCGA-TATC-CT--CTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-TG------TA-TTTGTCAATGTAA-TCCAG----AAAT-AAATC--TGA--AG-TGCCTCC-CCACAGGAG-------TAAT-ATCT---AATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTA-AGTTTCAAGGTTTTGGCAGTTTTA-TGATT-TTG---AATCCTA--CGT---TTTCC--TAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATT-GCTTAGCAG---AGAAGCAGCATTGA-TTTTTGC----TTG-----GCAGGGT---ATG-C-T-TTT----GAAGT-TCC-TGTAACTT-TAT--CCTTAAA------TCTAACAT---AT----ACTCA-----TC--TTGATTCCTC-AATTTCA-TTT-GTAT-CTCTT------TCT-TCAT-T-GGTTA--------ATCCCACTCTAG-------AT---AT-TC----TGTTGTTGATTTTCTCCA------ATA-G----ATTCTGTTTCTCTTTGTAG----TACATTCACCATTGCAGC
gi|3 : TCTTTTCCGTTC--AAGTATCCT--GGTTC------CATGTTACTGCTCTTAGTTA---------AAGTTAAGTATCATTTTTCACTGTAACCCAGTATTATTAG----TC-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATGC-ATTTCTCC------A--G-TTGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGAG-AATTCT-TTG---TGGA--TTTTTTC-TGATTGC---TG-GTAC-----TTAATAGAAAT-GCCTGA-T-AAAGGTC-CAGGGTAT-T-A-C--AA--G-GGAAT-TCT--AGACCTA----CT-CATATA-TGCT-TTGAAT--GTT-GTTGATATAAAACTTT---C--GTGCCTTTACCACA--TCTTTTTG
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggTTTTACTGTT-CAAAGTTGCCT--GGCTTCCTGCTTGTATTA--GATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTGAAGG--CAATCATTTCATTCACAA-CAAGTTCCCTTACC--ATTCCTCCACATATT-G--T-ATGT-AT-ATCTA------A--G-TTGTTATCTCCATTCTAACGAGTAATTTC---TCTTAAAAATCCTGTGGGACTGTA----TTTCCATTATTGT---TG-GTACTA--ACCGAATAACA----CTGAAGAA---GTGTCAGGGAAT-T-ACC--AA--G-TGA---
gi|19 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttccCCT-CTTAATTGCTCTGCAGATTT---T-ATG--TATGTCCC------A--GTT-GTCATTTCCATTCTGACGActtca
gi|1 : TGTTCCTCCGAAGTTCTG--TCATGTGTTTGTTCCTATCATACTG-T-GTGGTATCTTTTCTG---------CTC---TCTGAG-AGTTCT---G---TGGGATTTTAT--GTGATTGAATGTGAACATAGCTTTTG--TATAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGGACTTTCTTGAAA-CTGATCGCTGCATGTAATG-TGCTCAATTGGTTGTTGAGTGT-AAGCTCCTTCC--GTA--TT-GGAATAGGTTTCTT-GGAGCGATGGAAGG-TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCAT--GTCTGT--GATTATG-GTGACTGACT-AGCTCATC--AGGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA-CTGAGGATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGAT-ATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTAT-GGATACTTAGTTTTACA
gi|7 : TTGTTGATAT-AAACTCT---CTCATG--TT---ACTAA-TGTCTTTGGAGC--T--------------------TTGCATACATGGATTCT-TTATTTTGTGTATCTGTCT-A-TATCTCT--CT-----AAGACATCTAAAGCTTGTAT--AT-AATT-TG------CA-TTCGTCATTGTAAATCCAG----AAAA-AAAT---TGA--AG-TGACTTC-CCACAA-AG-------TAATGATAT---AAGGTA-GCT----A--AATT---TCTCAAT-ACCA--GAtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA---GTAGAGATTCA
gi|13 : g--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTA-AA-TTCA--GTTT
gi|15 : GCTGTT---T------TGCTATAGC-TAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACA-AGTT
gi|1 : aTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAACT--GCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGCTAAGCAGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGCTCA-----TA--T--GTTTCTCAAATTTCAGTTT-GTATCCTGTTGGCTGATCTCTCATGTAGGTTATCATTCGTATCTTAC-ATAGTGGGTATAT---AT-TCCGGATGTTGATGACTTCTTCCGTCAATTATATGACTCATTCTGTTTCGACTTGTAGGTTATACATcagt
gi|6 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtg-TTG---AATCTTA--CTG---TTTCC--TAAA-CTA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATT--CCTAGCAG---AT--GCAG-ATTTA-GTTTACC----TTG-----GCAATAT---ATG-C-T-TTT----CCAAT-TCC-TGTAACagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|5 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaa--GAAGAGTCATTG--------TAGT-GAATA---AACT--GC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATT-GCT-AGCAA---A--AGCAG-ATTGA-GTTTTGC----TTG-----GCAGGAT---ATG-CTT-TTT----GAAG--TCC-TGTAACTT-GGT--CCTTAAA------TCTAACAT---AC----ACTCAATGAGTCATCTAATTCCTC-AATTTCAGTTT-GTAT-C----------TCT-TCAT-T-GGTTA--------ATCC--CTCGAGA------AC---A--TC----TG-TGTTGATTTTCTCCA------ATA-G----ATTCTGTTTCTC-TTGTAG----TATATTCACCATTTCAg
gi|11 : CTAACAT---GT----ACTCA-----T---TTGATTCCTC-CATTTCA-TTTTGTAT-CTCTT-------CT-TCAT-T-GGCTA--------ATCC------AG-------ATAGAATAGC----TG-TGTTGATTTTCTCCA------TTA-G----ACCCT-TTTCTC-TTGTAc
gi|17 : TCTAG-------A----ATATC----TGT-GTTGATGTTCTCCA------ATA-G----ACCCTGTTTCTC-TTGTAG----TACATTCACCATTTCA
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|14 ): CATTACAGAAAATGCATAGCTTTTCATCCAGTTGGGCTCCTTTTTTCCGTTCAAAGCTCTTGGCTTTCCCCATGTACTAGCTTTAGTTAAA
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Unaligned ( gi|18 ): GGGCTCCTTTTCCCGTTCGAAGTATCCTGGTTTTCCCCATGTACTAGCTCTAGTTAAAAAG
Alignments
lowQualScore : 2 11 111111 33 66666666666666666666666 2 2222222 1 111111 11 22222222 222 111 1 1 111 2222222 1 11 2 88888888888888888888888888888888888888 1111111 11 1 1111 33 5555555555555555555555 33 1 1 1 222222 3333 1 555555555555555555 22 1 1 55555555555555555 2 1 4444444444444444 11 222222222 11 2222 1 5555555555 222 1 3333333 222 111 33333333 222222222 111 33333 1 1 11 222 1 1 222 55555 22 1 33 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 3333 22222 22222 111 1 111 2222 11 444444 555555 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 1 0 3 22 88 0 0 888888 00 1 7 55555555555555555555555 22 3 0 0000000 7 999 1 6 6 0 888 1 0 888888 1 88 66666666 0 8 88 555 777 0 0 3 111 3333333 4 0 11 0 55555555555555555555555555555555555555 3 8888888 33 0 4444 3 00 3333333333333333333333 1 00 0 0 0 111111 8888 2 1 888888888888888888 44 22 4 7 1 0 2 11111111111111111 222 3 1 5 9999999999999999 99 1 999999999 0 11 88 3333 1 5 1 5555555555 1 111 1 5 2222222 000 888 66666666 888888888 8 8 1 333 1 1 1 55555 0 3 33 333 3 4 5 5 111 77777 11 0 2 00 33 6 66666666 11 777 33 777 0 33 777 0 3 3 33 33 0 3 0 0 0 33 33 1111 55555 55555 777 0 111 1111 3 33 222222 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . . ...... .. . . ....................... .. . . ....... . ... . . . . ... . . ...... . .. ........ . . .. ... ... . . . ... ....... . . .. . ...................................... . ....... .. . .... . .. ...................... . .. . . . ...... .... . . .................. .. .. . . . . . ................. ... . . . ................ .. . ......... . .. .. .... . . . .......... . ... . . ....... ... ... ........ ......... . . . ... . . . ..... . . .. ... . . . . ... ..... .. . . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. .... ..... ..... ... . ... .... . .. ...... ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 7 3 00 33 7 7 777777 33 0 3 77777777777777777777777 00 3 7 7777777 3 333 0 7 7 0 111 0 8 888888 0 66 88888888 8 0 88 222 555 0 0 2 000 5555555 2 5 00 0 88888888888888888888888888888888888888 2 5555555 88 0 8888 2 33 3333333333333333333333 0 33 0 0 0 222222 3333 0 0 000000000000000000 33 00 0 3 0 7 0 00000000000000000 777 7 0 0 7777777777777777 33 0 333333333 7 77 00 0000 0 5 0 0000000000 0 000 0 5 0000000 555 777 22222222 000000000 0 0 0 555 0 0 0 00000 0 3 88 333 0 0 0 0 000 77777 77 7 0 77 88 5 22222222 00 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 2222 00000 00000 555 0 000 2222 2 88 777777 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTTCCGTTC-AAAGTTTCCT--GGTTTCCT-CTTGTGTTA--GCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTGGAAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTT--GT-ATGTATT-GTCCCAGT-------TGTCATTTCCATT-CTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAA-TA---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCT-ACCACTGCATGT-ATG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG-T-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-TCTG---GACTAANACATC-AAGGCTTGTNT-TAT-AATT--GTTTGT-CATTTCGTCATTGTAA-CC-AGGA-AAAATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGAT-ATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGC---ATTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTAT--CCTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTC-AATTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTNCCGTTCCAAAGTNNCCT--GGCTCCCTGCTCGTGTTACTGNTCTTAGTTATAAAG-------TTAAGTNTCATTNNTCACTGTAACCCAGCATTGTTGGAGGT-CAGTCATCTCATNNACNAGCAAGTTCCCCT-CTTTATTNCTCCGCAGATTT--GT-ATGTNTT-GTCCCAGT-------TGTCATTTCCATT-CTGACGA-TGATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTCCGTGATTGN-TG-GTAC--GTCG-----A-----TA-AAAT-GCCTGA--TA---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCTTGAGACCTGATCGCTGCATGTAATGCTGCTNAATTGGTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTNTCTTTGGAGCGATGGAAGG-TGCATC--AGCTTTTGCATACATGNNTTCNTTTATNTCGTGTGTCTGTCTGATTATN-TNTGACTGACTAGNNCATCTAAGGCTTGTNTCTATCAATTATGTTTGTTCATTTCGTCATTNTAAACCGAGGATAAGANCAAATCGTCGAACAGCTGNCTCCTCCACNAGAGTGTATTATGATGATNTACAAGNGTATGCTCGTGAGTAATTGTGTCTCGGTGACCATCGACA--------GGCTGTTG--T------TGCTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGNTTTGCCATTCAAGTANANTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGTCAGACTTAGTAATTGTTGTGAAATCCTAACCNNCTTTTTCCGCTAAGCCTATTATCTGA--GAAGAGTCATTG--------TAGN-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AGAA--GCAG----ATTGAGTTTT-----GCTTGG-----CAGGAT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGNGTCACCTTAAAAATTCTTCTAACAT---AT----AC--------TCAT-TTGATTCCTC-AATTTCAGTTTGTATCT-TTTCTTCATTGGTTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TGTTCCTCCGAAGTTCT--GTCATGTGTTTGTTCCTATCATACTGTGTGGTATCTTTT-CTG---------CTC---TCTGAG-AGTTC-T-G-T-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGAC-TC---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAAC-TGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATT--GGAATAGGTTTCTTGGAGCGATGGAAGG-TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCATGT--CTGT--GATTATG--GTGACTGACTAGCTCATC--AGGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA-CTGAGGATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGAT-ATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTATGG-ATACTTAGTTTTACA
gi|1 : TCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTC-CATTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : GACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : --------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|15 : GCTGTT---T------TGCTATAG-CTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GT
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|19 : CCT-CTTAATTGCTCTGCAGATTT---T-ATGTAT--GTCCCAGT-------TGTCATTTCCATT-CTGACGA-
gi|2 : TTTTTTTTGTTTCAAAGTTTCCTTTGGTTTACTTCTTGTGTTA--GCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTT--GT-ATGTTTT-GTCCCAGT--------GTCATTTCCATT-CTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAA-TA---GTCTCAGGGTATG--A-C--AA--G-GG-A--T-CT--AGACT--ACCA-TGTATGT-------CTCAAT--GTTCGTGGA-TAT-AAACTCT---C--GTGTTTGG-AATA-TTTCTTTGGAGT--TGGAAGGATCCATTCAAGCTTTTGCAT-TATGCATTCGTT-ATTTTGTGGGTTTGTCCGAT-ATCCTCTG---GATAAAAACATC-AAGGCTTGTCT-TAT-AATT-----TGT--ATTT-GTCAATGTAATCC------AGAAATAAATC--TGAA--G-TGCCTCC-CCACAGGAGTA-------AT-ATCTA---ATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTTC--CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGC---ATTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TAT--CCTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTC-AATTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTTCCGTTC--AAGTATCCT--GGTTCC------ATGTTACTGCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTT-CTCT-CTTT-TGGTTCTGC-GAGTTGGGTGATGCATT-TCTCCAGT-------TGTCA-TTCCATTCCT--CGATTGATTTCCCGTCTGAG-AATTCTTTG-T-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTGA--TAAAGGTC-CAGGGTATT--A-C--AA--G-GGAA--TTCT--AGACCT----ACT-CATAT-ATGCT-TTGAAT--GTT-GTTGA-TATAAAACTTT---C--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggTTTACTGTTC-AAAGTTGCCT--GGCTTCCTGCTTGTATTA--GATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTGAAGG--CAATCATTTCATTCACAA-CAAGTTCCCTTACC--ATTCCTCCACATATT---GT-ATGTAT--ATCTAAGT-------TGTTATCTCCATT-CTAACGAGTAATTTC---TCTTAA-AAATC-CTG-TGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAATT--ACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttcct--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG----ATTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GT--CCTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTC-AATTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG----ATTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTCT---CTCATGTT----ACTAATGTCTTTGGAGC----------------------TTTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TATC-TCT------CTAAGACATCTAAAGCTTGTATATA--------ATTTG--CATT-CGTCATTGTAAATCCAGAAAAAAATTGAAg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|14 ): CATTACAGAAAATGCATAGCTTTTCATCCAGTTGGGCTCCTTTTTTCCGTTCAAAGCTCTTGGCTTTCCCCATGTACTAGCTTTAGTTAAA
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Unaligned ( gi|18 ): GGGCTCCTTTTCCCGTTCGAAGTATCCTGGTTTTCCCCATGTACTAGCTCTAGTTAAAAAG
Alignments
lowQualScore : 11 1 11111 11 333333333333 11 1 22 1 1 111111 11 22222222 1 111 1 1 111 2222222 1 11 2 77777777777777777 1 11 22222 1111111 11 1 1111 11 1 4444 1 111 11 1 1 1 222222 3333 1 6666666666666666666 1 1 4444444444444444444 1 22 1 6666666666 11 33333333333333 11 2222 1 3333333 222 1 3333333 222 11 33333333 222222222 111 33333 1 1 11 222 1 1 222 33333 22 1 11 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 22222 22222 22222 111 1 111 2222 11 11 11 333333 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 8 8 0 55 11 6 8 44444 11 11 555555555555 3 88 22 3 11 3 7 7 6 6 0 888 0 888888 88 66666666 0 0 2 0 777 0 0 3 111 3333333 1 0 00 0 33333333333333333 0 33 3 44444 3 8888888 33 0 4444 3 88 2 1111 3 777 88 0 0 0 111111 8888 2 3333333333333333333 3 6 7 0 2 9999999999999999999 1 3 7 1 00 3 9999999999 99 22222222222222 88 3333 5 2 3333333 111 5 2222222 000 88 66666666 888888888 8 8 1 333 55555 0 3 33 333 1 1 5 5 111 33333 6 00 2 88 33 6 66666666 00 777 33 777 0 33 777 0 3 3 33 33 0 1 0 0 0 33 33 77777 55555 55555 777 0 111 1111 3 33 44 88 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . . ..... .. .. ............ . .. .. . .. . . . . . . ... . ...... .. ........ . . . . ... . . . ... ....... . . .. . ................. . .. . ..... . ....... .. . .... . .. . .... . ... .. . . . ...... .... . ................... . . . . . ................... . . . . .. . .......... .. .............. .. .... . . ....... ... . ....... ... .. ........ ......... . . . ... ..... . . .. ... . . . . ... ..... . .. . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. ..... ..... ..... ... . ... .... . .. .. .. ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 0 8 22 00 0 0 22222 00 66 888888888888 7 33 00 3 77 3 3 3 7 5 0 000 8 888888 66 88888888 8 6 5 8 555 0 0 2 000 5555555 2 5 22 0 55555555555555555 0 22 2 55555 2 5555555 88 0 8888 2 33 0 0000 3 777 33 0 0 0 222222 3333 0 0000000000000000000 3 7 3 7 0 7777777777777777777 0 3 3 0 77 3 3333333333 33 00000000000000 00 0000 5 5 0000000 000 5 0000000 555 00 22222222 000000000 0 0 0 555 00000 0 3 88 333 0 0 0 0 000 33333 7 00 0 33 88 5 22222222 22 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 55555 00000 00000 555 0 000 2222 2 88 00 33 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CNTGTATTA--GCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTACCG---CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTAT-----C-TCT-GACTAANACATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTT-CCGTT-CAAAGTTTCCT--GG-TTT-CCT-CTTGTGTTA--GCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTGGAAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTACCACTGCATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--T-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTAT-----C-TCTGGACTAANACATC-AAGGCTTGTNT-TAT-AATT--GTTTGTC-ATTTCGTCATTGTAA--CC-AG-GA-AAAATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TGTTCCTCCGAAGTTCTG--TCATGTGTTTGTTCCTATCATACTGTGTGGTATCTTTTCTG---------CTC---TCTGAG-AGTTC-T-G-T-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAACTGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATT--GGAATAGGTTTCTTGGAGCGATGGAAGG--TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCATGT--CTGT--GATTATGGTGAC-T---GACTAGCTCATC-A-GGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA--CTGAG-GATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGATATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTATGG-ATACTTAGTTTTACA
gi|1 : TCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTCCA-TTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : g--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|14 : TTTTTT-CCGTT-CAAAG-CTCTT--GGCTTT-CCC-CATGTACTA--GCT-TTAGTTA
gi|15 : cattacagaaaatgcatagcttttcatccagttgggctccGCTGTT---T------TGCTATAG-CTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GTaa
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|18 : TTTC-CCGTT-CGAAGTATCCT--GGTTTT-CCC-CATGTACTA--GCTC-TAGTTAAAAAG-------
gi|19 : gggctcctCCT-CTTAATTGCTCTGCAGATTT---T-ATGTAT--GTCCCAGT-------TGTCATTTCCATTCTGACGA
gi|2 : TTTTTT-TTGTTTCAAAGTTTCCTTTGG-TTTACTT-CTTGTGTTA--GCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGTTTT-GTCCCAGT--------GTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAAT-A---GTCTCAGGGTATG--A-C--AA--G-GG-A--T-CT--AGAC-TACCA-----TGTA-TG-T-CTCAAT--GTTCGTGGA-TAT-AAACTCT---C--GTGTTTGG-AATA-TTTCTTTGGAGT--TGGAAGGATC-CATTCAAGCTTTTGCAT-TATGCATTCGTT-ATTTTGTGGGTTTGTCCGAT-AT-----CCTCTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-----TGT--ATTT-GTCAATGTAAT-CC-AG-AA-A----TAAATC--TGAA--G-TGCCTCC-CCACAGGAGTA-------ATATCTA---ATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTT-C-CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGCA---TTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TATC--CTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTCAA-TTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTT-CCGTT-CAA-GTATCCT--GG-TTC-C------ATGTTACTGCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATGCATT-TCTCCAGT-------TGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGAG-AATTCTTTG-T-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTG-AT-AAAGGTC-CAGGGTATT--A-C--AA--G-GGAA--TTCT--AGACCTACT----CATATA-TGCT-TTGAAT--GTT-GTTGA-TATAAAACTTT---C--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggCTTTTACTGTT-CAAAGTTGCCT--GG-CTT-CCTGCTTGTATTA--GATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTG-AAGG-CAATCATTTCATTCACAA-CAAGTTCCCTTACC--ATTCCTCCACATATT-G--T-ATGTAT--ATCTAAGT-------TGTTATCTCCATTCTAACGAGTAATTTC---TCTTAA-AAATC-CTG-TGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAATT--ACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttc--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG-A---TTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GTC--CTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTCAA-TTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG-A---TTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTCT---CTCATGTT----ACTAATGTCTTTGGAGC--T---------------------TTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TAT-----C-TCT---CTAAGACATCTAAAGCTTGTAT--AT-AATT-----TG-C-ATT-CGTCATTGTAAATCC-AGAAA-AAAATTGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Alignments
lowQualScore : 11 1 333333333333 11 1 22 1 1 1111 22222222 1 111 1 1 111 2222222 1 11 2 77777777777777777 1 11 22222 11111111 11 1 1111 11 333333333 1 111 11 1 1 1 111 11 333 1 6666666666666666666 1 33333333333333 11 111 22 22 1 1 5555555 11 33 1 1111111 11 2222 1 3333333 222 1 3333333 222 11 33333333 222222222 111 33333 1 1 11 222 1 1 222 33333 22 1 11 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 22222 22222 22222 111 1 111 2222 11 11 11 333333 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 8 8 0 11 11 6 88 8 1 8 0 11 555555555555 3 88 22 3 00 3 7 7 6 6 0 3 3 0 5 8888 999 66666666 0 0 2 0 777 0 0 3 111 3333333 1 0 00 0 33333333333333333 0 33 3 44444 3 55555555 33 0 4444 3 88 999999999 3 777 88 0 0 0 777 33 888 2 2222222222222222222 3 6 7 77 55555555555555 00 444 00 1 00 3 3 2222222 99 11 3 5555555 88 3333 5 2 3333333 111 5 2222222 000 88 66666666 888888888 8 8 1 333 55555 0 3 33 333 1 1 5 5 111 33333 6 00 2 88 33 6 66666666 00 777 33 777 0 33 777 0 3 3 33 33 0 1 0 0 0 33 33 77777 55555 55555 777 0 111 1111 3 33 44 88 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . .. . . . . .. ............ . .. .. . .. . . . . . . . . . . .... ... ........ . . . . ... . . . ... ....... . . .. . ................. . .. . ..... . ........ .. . .... . .. ......... . ... .. . . . ... .. ... . ................... . . . .. .............. .. ... .. . .. . . ....... .. .. . ....... .. .... . . ....... ... . ....... ... .. ........ ......... . . . ... ..... . . .. ... . . . . ... ..... . .. . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. ..... ..... ..... ... . ... .... . .. .. .. ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 0 8 88 00 0 88 0 0 0 8 66 888888888888 7 33 00 3 00 3 3 3 7 5 0 2 8 8 6 0000 666 88888888 8 6 5 8 555 0 0 2 000 5555555 2 5 22 0 55555555555555555 0 22 2 55555 2 55555555 88 0 8888 2 33 333333333 3 777 33 0 0 0 555 88 333 0 7777777777777777777 3 7 3 33 77777777777777 77 000 77 0 77 3 3 7777777 33 77 3 7777777 00 0000 5 5 0000000 000 5 0000000 555 00 22222222 000000000 0 0 0 555 00000 0 3 88 333 0 0 0 0 000 33333 7 00 0 33 88 5 22222222 22 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 55555 00000 00000 555 0 000 2222 2 88 00 33 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTAT--TA-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGT-ATG-T-CTCAAT--GTT-GTTGA-TAT-AAACTC---TC--GTGTT--GAATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTAT-C-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-TG-----TCATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CNTGT-ATTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTAT--TA-C--AA--G-GG-A--TTCT--AGACCTA---CCGCATGT-ATG-T-CTCAAT--GTT-GTTGA-TAT-AAACTC---TC--GTGTT--GAATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTAT-C-T--CTGACTAANA-CATC-AAGGCTTGTNT-TAT-AATT-TG-----TCATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TGTTCCTCCGAAGTTCTG--TCATGTGTTTGTTCCTATCATACTGTGTGGTATCTTTTCTG---------CTC---TCTGAG-AGTTC-T-G-T-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAACTGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATTG-GAATAGGTTTCTTGGAGCGATGGAAGG--TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATC--ATGTCTGT--GATTATGG-TGACTGACTAGCT-CATC--AGGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA--CTGAG-GATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGATATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTATGG-ATACTTAGTTTTACA
gi|1 : TCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTCCA-TTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : g--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|14 : TTTTTT-CCGTT-CAAAG-CTCTT--GGCTTT-CCC-CATGT-ACTAGCT-TTAGTTA
gi|15 : cattacagaaaatgcatagcttttcatccagttgggctccGCTGTT---T------TGCTATAG-CTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GTaa
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|18 : TTTC-CCGTT-CGAAGTATCCT--GGTTTT-CCC-CATGT-ACTAGCTC-TAGTTAAAAAG-------
gi|19 : gggctcctCCT-CTTAATTGCTCTGCAGATTT---T-ATGTAT--GTCCCAGT-------TGTCATTTCCATTCTGACGA
gi|2 : TTTTTT-TTGTTTCAAAGTTTCCTTTGG-TTTACTT-CTTGT-GTTAGCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGTTTT-GTCCCAGT--------GTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAAT-A---GTCTCAGGGTAT--GA-C--AA--G-GG-A--T-CT--AGAC-TA---CC--ATGT-ATG-T-CTCAAT--GTTCGTGGA-TAT-AAACTC---TC--GTGTTTGGAATA-TTTCTTTGGAGT--TGGAAGGATC-CATTCAAGCTTTTGCAT-TATGCATTCGTT-ATTTTGTGGGTTTGTCCGAT-AT-CCT--CTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-TG-----T-ATTT-GTCAATGTAAT-CC-AG-AA-A----TAAATC--TGAA--G-TGCCTCC-CCACAGGAGTA-------ATATCTA---ATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTT-C-CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGCA---TTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TATC--CTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTCAA-TTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTT-CCGTT-CAA-GTATCCT--GG-TT----C-CATGTTACT-GCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATGCATT-TCTCCAGT-------TGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGAG-AATTCTTTG-T-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTG-AT-AAAGGTC-CAGGGTAT--TA-C--AA--G-GGAA--TTCT--AGACCTA---CT-CATAT-ATGCT-TTGAAT--GTT-GTTGA-TATAAAACTT---TC--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggCTTTTACTGTT-CAAAGTTGCCT--GG-CTT-CCTGCTTGT-ATTAGATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTG-AAGG-CAATCATTTCATTCACAA-CAAGTTCCCTTAC--CATTCCTCCACATA-TTG--T-ATGTA-T-ATCTAAGT-------TGTTATCTCCATTCTAACGAGTAATTTC---TCTTAA-AAATC-CTG-TGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAAT--TACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttc--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG-A---TTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GTC--CTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTCAA-TTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG-A---TTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTC---TCTCATGTT---ACTAATGTCTTTGGAGC--T---------------------TTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TAT-C-T--CT--CTAAGA-CATCTAAAGCTTGTAT--AT-AATT-TG------CATT-CGTCATTGTAAATCC-AGAAA-AAAATTGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Alignments
lowQualScore : 11 1 333333333333 11 1 22 1 1 1111 22222222 1 111 1 1 111 2222222 1 11 2 77777777777777777 1 11 22222 1111111 11 1 1111 11 333333333 1 111 11 1 1 1 222222 3333 1 6666666666666666666 1 1 111111 3333 11 111 1 22 1 4444444444 11 33 1 1111111 11 2222 1 3333333 222 1 3333333 222 11 33333333 222222222 111 33333 1 1 11 222 1 1 222 33333 22 1 11 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 22222 22222 22222 111 1 111 2222 11 11 11 333333 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 8 8 0 11 11 6 88 8 1 8 0 11 555555555555 3 88 22 3 00 3 7 7 6 6 0 3 3 0 5 8888 999 66666666 0 0 2 0 777 0 0 3 111 3333333 1 0 00 0 33333333333333333 0 33 3 44444 3 8888888 33 0 4444 3 88 666666666 3 777 88 0 0 0 111111 8888 2 2222222222222222222 3 6 7 0 2 999999 6666 00 444 3 7 1 00 3 7777777777 99 11 3 5555555 88 3333 5 2 3333333 111 5 2222222 000 88 66666666 888888888 8 8 1 333 55555 0 3 33 333 1 1 5 5 111 33333 6 00 2 88 33 6 66666666 00 777 33 777 0 33 777 0 3 3 33 33 0 1 0 0 0 33 33 77777 55555 55555 777 0 111 1111 3 33 44 88 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . .. . . . . .. ............ . .. .. . .. . . . . . . . . . . .... ... ........ . . . . ... . . . ... ....... . . .. . ................. . .. . ..... . ....... .. . .... . .. ......... . ... .. . . . ...... .... . ................... . . . . . ...... .... .. ... . . . .. . .......... .. .. . ....... .. .... . . ....... ... . ....... ... .. ........ ......... . . . ... ..... . . .. ... . . . . ... ..... . .. . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. ..... ..... ..... ... . ... .... . .. .. .. ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 0 8 88 00 0 88 0 4 0 8 66 888888888888 7 33 00 3 00 3 3 3 7 5 0 2 8 8 6 0000 666 88888888 8 6 5 8 555 0 0 2 000 5555555 2 5 22 0 55555555555555555 0 22 2 55555 2 5555555 88 0 8888 2 33 000000000 3 777 33 0 0 0 222222 3333 0 7777777777777777777 3 7 3 7 0 333333 0000 33 000 3 3 0 77 3 0000000000 33 77 3 7777777 00 0000 5 5 0000000 000 5 0000000 555 00 22222222 000000000 0 0 0 555 00000 0 3 88 333 0 0 0 0 000 33333 7 00 0 33 88 5 22222222 22 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 55555 00000 00000 555 0 000 2222 2 88 00 33 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TGTTCCTCCGAAGTTCTG--TCATGTGTTTGTTCCTATCATACTGTGTGGTATCTTTTCTG---------CTC---TCTGAG-AGTTC-T-G-T-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAACTGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATT--GGAATAGGTTTCTTGGAGCGATGGAAGG--TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCATGT--CTGT--GATTATGGTGACTGACTAGCT-CATC-A-GGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA--CTGAG-GATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGATATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTATGG-ATACTTAGTTTTACA
gi|1 : TCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTCCA-TTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : g--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|14 : TTTTTT-CCGTT-CAAAG-CTCTT--GGCTTT-CCC-CATGT-ACTAGCT-TTAGTTA
gi|15 : cattacagaaaatgcatagcttttcatccagttgggctccGCTGTT---T------TGCTATAG-CTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GTaa
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|18 : TTTC-CCGTT-CGAAGTATCCT--GGTTTT-CCC-CATGT-ACTAGCTC-TAGTTAAAAAG-------
gi|19 : gggctcctCCT-CTTAATTGCTCTGCAGATTT---T-ATGTAT--GTCCCAGT-------TGTCATTTCCATTCTGACGA
gi|2 : TTTTTT-TTGTTTCAAAGTTTCCTTTGG-TTTACTT-CTTGT-GTTAGCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGTTTT-GTCCCAGT--------GTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAAT-A---GTCTCAGGGTATG--A-C--AA--G-GG-A--T-CT--AGAC-TA---C--CATGTA-TG-T-CTCAAT--GTTCGTGGA-TAT-AAACTCT---C--GTGTTTGG-AATA-TTTCTTTGGAGT--TGGAAGGATC-CATTCAAGCTTTTGCAT-TATGCATTCGTT-ATTTTGTGGGTTTGTCCGAT-ATCCT--CTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-----TGT--ATTT-GTCAATGTAAT-CC-AG-AA-A----TAAATC--TGAA--G-TGCCTCC-CCACAGGAGTA-------ATATCTA---ATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTT-C-CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGCA---TTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TATC--CTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTCAA-TTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTT-CCGTT-CAA-GTATCCT--GG-TT----C-CATGTTACT-GCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATGCATT-TCTCCAGT-------TGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGAG-AATTCTTTG-T-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTG-AT-AAAGGTC-CAGGGTATT--A-C--AA--G-GGAA--TTCT--AGACCTA---CT-CATATA-TGCT-TTGAAT--GTT-GTTGA-TATAAAACTTT---C--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggCTTTTACTGTT-CAAAGTTGCCT--GG-CTT-CCTGCTTGT-ATTAGATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTG-AAGG-CAATCATTTCATTCACAA-CAAGTTCCCTTAC--CATTCCTCCACATA-TTG--T-ATGTA-T-ATCTAAGT-------TGTTATCTCCATTCTAACGAGTAATTTC---TCTTAA-AAATC-CTG-TGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAATT--ACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttc--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG-A---TTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GTC--CTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTCAA-TTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG-A---TTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTCT---CTCATGTT----ACTAATGTCTTTGGAGC--T---------------------TTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TATC-T--CT--CTAAGA-CATCTAAAGCTTGTAT--AT-AATT-----TG-C-ATT-CGTCATTGTAAATCC-AGAAA-AAAATTGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Alignments
lowQualScore : 11 1 333333333333 11 1 22 1 1 1111 22222222 1 111 1 1 111 2222222 1 11 2 77777777777777777 1 11 22222 1111111 11 1 1111 11 333333333 1 111 11 1 1 1 222222 3333 1 6666666666666666666 1 1 111111 3333 11 111 1 22 1 4444444444 11 33 1 1111111 11 2222 1 3333333 222 1 3333333 222 11 33333333 222222222 111 33333 1 1 11 222 1 1 222 33333 22 1 11 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 22222 22222 22222 111 1 111 2222 11 11 11 333333 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 8 8 0 11 11 6 88 8 1 8 0 11 555555555555 3 88 22 3 00 3 7 7 6 6 0 3 3 0 5 8888 999 66666666 0 0 2 0 777 0 0 3 111 3333333 1 0 00 0 33333333333333333 0 33 3 44444 3 8888888 33 0 4444 3 88 666666666 3 777 88 0 0 0 111111 8888 2 2222222222222222222 3 6 7 0 2 999999 6666 00 444 3 7 1 00 3 7777777777 99 11 3 5555555 88 3333 5 2 3333333 111 5 2222222 000 88 66666666 888888888 8 8 1 333 55555 0 3 33 333 1 1 5 5 111 33333 6 00 2 88 33 6 66666666 00 777 33 777 0 33 777 0 3 3 33 33 0 1 0 0 0 33 33 77777 55555 55555 777 0 111 1111 3 33 44 88 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . .. . . . . .. ............ . .. .. . .. . . . . . . . . . . .... ... ........ . . . . ... . . . ... ....... . . .. . ................. . .. . ..... . ....... .. . .... . .. ......... . ... .. . . . ...... .... . ................... . . . . . ...... .... .. ... . . . .. . .......... .. .. . ....... .. .... . . ....... ... . ....... ... .. ........ ......... . . . ... ..... . . .. ... . . . . ... ..... . .. . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. ..... ..... ..... ... . ... .... . .. .. .. ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 0 8 88 00 0 88 0 4 0 8 66 888888888888 7 33 00 3 00 3 3 3 7 5 0 2 8 8 6 0000 666 88888888 8 6 5 8 555 0 0 2 000 5555555 2 5 22 0 55555555555555555 0 22 2 55555 2 5555555 88 0 8888 2 33 000000000 3 777 33 0 0 0 222222 3333 0 7777777777777777777 3 7 3 7 0 333333 0000 33 000 3 3 0 77 3 0000000000 33 77 3 7777777 00 0000 5 5 0000000 000 5 0000000 555 00 22222222 000000000 0 0 0 555 00000 0 3 88 333 0 0 0 0 000 33333 7 00 0 33 88 5 22222222 22 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 55555 00000 00000 555 0 000 2222 2 88 00 33 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TGTTCCTCCGAAGTTCTG--TCATGTGTTTGTTCCTATCATACTGTGTGGTATCTTTTCTG---------CTC---TCTGAG-AGTTC-T-G-T-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAACTGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATT--GGAATAGGTTTCTTGGAGCGATGGAAGG--TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCATGT--CTGT--GATTATGGTGACTGACTAGCT-CATC-A-GGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA--CTGAG-GATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGATATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTATGG-ATACTTAGTTTTACA
gi|1 : TCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTCCA-TTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTATGG-ATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : g--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|14 : TTTTTT-CCGTT-CAAAG-CTCTT--GGCTTT-CCC-CATGT-ACTAGCT-TTAGTTA
gi|15 : cattacagaaaatgcatagcttttcatccagttgggctccGCTGTT---T------TGCTATAG-CTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GTaa
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|18 : TTTC-CCGTT-CGAAGTATCCT--GGTTTT-CCC-CATGT-ACTAGCTC-TAGTTAAAAAG-------
gi|19 : gggctcctCCT-CTTAATTGCTCTGCAGATTT---T-ATGTAT--GTCCCAGT-------TGTCATTTCCATTCTGACGA
gi|2 : TTTTTT-TTGTTTCAAAGTTTCCTTTGG-TTTACTT-CTTGT-GTTAGCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGTTTT-GTCCCAGT--------GTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAAT-A---GTCTCAGGGTATG--A-C--AA--G-GG-A--T-CT--AGAC-TA---C--CATGTA-TG-T-CTCAAT--GTTCGTGGA-TAT-AAACTCT---C--GTGTTTGG-AATA-TTTCTTTGGAGT--TGGAAGGATC-CATTCAAGCTTTTGCAT-TATGCATTCGTT-ATTTTGTGGGTTTGTCCGAT-ATCCT--CTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-----TGT--ATTT-GTCAATGTAAT-CC-AG-AA-A----TAAATC--TGAA--G-TGCCTCC-CCACAGGAGTA-------ATATCTA---ATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTT-C-CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGCA---TTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TATC--CTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTCAA-TTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTT-CCGTT-CAA-GTATCCT--GG-TT----C-CATGTTACT-GCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATGCATT-TCTCCAGT-------TGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGAG-AATTCTTTG-T-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTG-AT-AAAGGTC-CAGGGTATT--A-C--AA--G-GGAA--TTCT--AGACCTA---CT-CATATA-TGCT-TTGAAT--GTT-GTTGA-TATAAAACTTT---C--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggCTTTTACTGTT-CAAAGTTGCCT--GG-CTT-CCTGCTTGT-ATTAGATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTG-AAGG-CAATCATTTCATTCACAA-CAAGTTCCCTTAC--CATTCCTCCACATA-TTG--T-ATGTA-T-ATCTAAGT-------TGTTATCTCCATTCTAACGAGTAATTTC---TCTTAA-AAATC-CTG-TGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAATT--ACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttc--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG-A---TTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GTC--CTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTCAA-TTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG-A---TTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTCT---CTCATGTT----ACTAATGTCTTTGGAGC--T---------------------TTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TATC-T--CT--CTAAGA-CATCTAAAGCTTGTAT--AT-AATT-----TG-C-ATT-CGTCATTGTAAATCC-AGAAA-AAAATTGAAg
blockSeqs : A T TA TT T TA G A T TT TAAAGCTGGAAG G AT TT C G . A T G C A T A T GGTG TT T A G CCG G T T GT CTGTA T A C A AACTACTAAT G T A AAAG T ACC . . AA T . CTACT . CT . C . A CTC TGG A TGGAAGGATCCATTCA A G T G CCGAT CT GG AAA T A C T . TGT T AT . AAAAAA . G . A . . . A . . . C G . A GA A A T AG . G T . . . . C C C . . C . G . AA . . . . . A A . . . G . T . AG . CA . . . . TT . T . T . . ACACTCAATGAG CT A . T TCTT CACTC TA TT G T
blockSeqs : . . TT . . T . T . TT AAG . . GG . . . . . . T . T A T T TT T A T . . . T TG ATTT T A C . TAACCGAA . T A AA T AC . . A T . TAC . T . . . . C . . T . . . A CTAT T . GA . A A . . TGC C T . AAA . T . . T AC . . . . . . . . . . . C . T . T . . . . . A A . . . T . . . . . A . . . . T . T . G . . GTAC T A . G TCT AGA A T G .
blockSeqs : . . TA . . T . A . T TA . . . A G T T T A G . . . T T TT C . T . TTAA . . . A . AC . . A . . . . C . T . . A A . . . . T . A . . . . . . . A A . . . T . . . . . A . . . . T . . . ATAC C A . . . CTC A T G .
blockSeqs : . . TT . . . . T . T . . T T . . T . . T A
blockSeqCons : TN T*** T** T******* T********
originalCons : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATGTATT-GTCCCAGT-------TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
finalCons : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTGT---ATGTAT--GTCCCAGTT-------GTCATTTCCATTCTGACGAGTAATTTC---TCTGAG-AATTC-TTG-T-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTATC-T--CTGGCTAANA-CATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTGT--------TGTTATGG-ATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG
Alignments
lowQualScore : 11 1 333333333333 11 1 22 1 1 111 222222 1 1 111 1 1111 1 2222222 1 11 2 77777777777777777 1 11 22222 22222222222222222222 11 333333 1 111 11 1 1 1 222222 3333 1 6666666666666666666 1 11 1 33333333333333 11 1 1 22 1 4444444444 11 33 1 1111111 11 11 1 1 3333333 222 1 3333333 222 11 33333333 222222222 111 33333 1 1 11 222 1 1 222 33333 22 1 11 11 33333333 11 111 22 111 1 11 111 1 11 11 1 1 1 1 11 11 22222 22222 22222 111 1 111 2222 11 11 11 333333 4444444444444444444 11 1 2222 11111111 22 11 1
lowQualScore : 8 8 0 11 11 6 88 8 1 8 0 11 555555555555 3 88 22 3 00 3 7 7 6 6 0 000 2 3 000000 0 0 0 3 3 33 777 0 8888 0 3333333 1 0 00 0 33333333333333333 0 33 3 44444 3 22222222222222222222 88 6 444444 3 777 88 0 0 0 111111 8888 2 2222222222222222222 3 44 0 2 55555555555555 00 3 1 3 7 1 00 3 7777777777 99 11 3 5555555 88 88 5 5 2 3333333 111 5 2222222 000 88 66666666 888888888 8 8 1 333 55555 0 3 33 333 1 1 5 5 111 33333 6 00 2 88 33 6 66666666 00 777 33 777 0 33 777 0 3 3 33 33 0 1 0 0 0 33 33 77777 55555 55555 777 0 111 1111 3 33 44 88 888888 9999999999999999999 11 3 0 8 7777 44444444 11 0 88 2 0
lowQualScore : . . . .. .. . .. . . . . .. ............ . .. .. . .. . . . . . . ... . . ...... . . . . . .. ... . .... . ....... . . .. . ................. . .. . ..... . .................... .. . ...... . ... .. . . . ...... .... . ................... . .. . . .............. .. . . . . . .. . .......... .. .. . ....... .. .. . . . ....... ... . ....... ... .. ........ ......... . . . ... ..... . . .. ... . . . . ... ..... . .. . .. .. . ........ .. ... .. ... . .. ... . . . .. .. . . . . . .. .. ..... ..... ..... ... . ... .... . .. .. .. ...... ................... .. . . . .... ........ .. . .. . .
lowQualScore : 0 0 8 88 00 0 88 0 4 0 8 66 888888888888 7 33 00 3 00 3 3 3 7 5 0 000 0 2 555555 0 2 0 2 2 55 555 0 0000 0 5555555 2 5 22 0 55555555555555555 0 22 2 55555 2 22222222222222222222 33 7 000000 3 777 33 0 0 0 222222 3333 0 7777777777777777777 3 00 7 0 77777777777777 33 3 0 3 3 0 77 3 0000000000 33 77 3 7777777 00 00 0 5 5 0000000 000 5 0000000 555 00 22222222 000000000 0 0 0 555 00000 0 3 88 333 0 0 0 0 000 33333 7 00 0 33 88 5 22222222 22 555 88 555 0 88 555 0 2 2 88 88 0 0 0 0 0 88 88 55555 00000 00000 555 0 000 2222 2 88 00 33 333333 2222222222222222222 22 2 0 8 0000 88888888 22 8 88 5 0
consensus : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATG-TATGTC-CCAGTTGTCATTTCCATTCTGACGAGTAATTTC---TCTGA-GAATTC-TT-GT-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGA-TAT-C-T--CTGGCT-AANACATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTAT-GGATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
Reference ( family-2201 ) : TCTTTT-CCGTT-CAAAGTNTCCT--GG-TTT-CCC-CATGT-ACTAGCTCTTAGTTATAAAG-------TTAAGTTTC--TNNTCACTGTAACC-AGTATTGTTG-AAGT-CAGTCATCTCATACACAAGCAAGTTCCCCT-CTTTATTGCTCCGCAGATTTG--T-ATG-TATGTC-CCAGTTGTCATTTCCATTCTGACGAGTAATTTC---TCTGA-GAATTC-TT-GT-GGA--TT---TTTTCGTGATTGC-TG-GTAC--ATCG-----A-----TA-AAAT-GCCTGAAT-A---GTCTCAGGGTATT--A-C--AA--G-GG-A--TTCT--AGACCTA---CT-CATGTA-TG-T-CTCAAT--GTT-GTTGA-TAT-AAACTCT---C--GTGTT--G-AATAGTTTCTTTGGAGC--TGGAAGG--C-CATC--AGCTTTTGCAT-TATGCATTCGTTTATTTCGTGTGTCTGTCCGATTAT-C-T--CTGGCT-AANACATC-AAGGCTTGTNT-TAT-AATT-----TGTC-ATTTCGTCATTGTAA--CC-AG-AA-AAGATTAAATCGTCGAACAGCTGCCTCCTCCACCGGAGTGTATTATGATATCTACAAGTGTATGCTCGTGAGTAATTGTGTCTCGGCGACCATCAACA--------GGCTGTTG--T------TGTTAT-GGATAC-TAGTTTCANAACAGTCCCA-A-AGTTTTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAG-TTCA--GTTT---TGNCAGNCTTAGTGATTGTTGTGAAATCCTA-----CTTTTTCC-CTAAACCTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGNTTTCATAATTG-C-TA-GC--AGAA--GCAGCA---TTGAGTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTTGTATC--CTTAAA------TCTAACAT---AT----AC--------TCAT-TTGATTCCTCAA-TTTCAGTTTGTATCT-TTTCTTCATTGGCTAATCC--CTC---TAGATATATCTGTTGTTGATTTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|1 : TC---TCTGA-GAGTTC-T--GT-GGG--AT---TTTATGTGATTGAATGTGAAC--ATAGCTTTTG-----TA-TAGTTGCGTGACT-C---GTCTCAGGGTATTGTA-CCTAATTGTGG-ACTTTCTTGAAACTGATCGCTGCATGTAATG-TGCTCAATTGGTT-GTTGAGTGT-AAGCTCCTTCC--GTATT--GGAATAGGTTTCTTGGAGCGATGGAAGG--TGCATC--AGCTTTTGCAT-TATGCCTTCGTTTATATCATGT--CTGT--GATTAT-GGTGACTGACT-AGCTCATC-A-GGCTTGTTTCTATCAATTATGTTTGTTTATTTTGTCATTTTAA--CTGAG-GATAAGATCAAATCGTCGAACAGCTGCCTCCTCCACCAGAGTGTATTATGATATCTACAAGTGTATGTTCGTGAGTAATTGTGTTTCGGTGACTATCAATATAATCAAGGGCTGTTGAATCGTCTGTGTTAT-GGATACTTAGTTTTACA
gi|1 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgcTCA--TTTTGTGTGTCAGACTTAGTAATTGTTGTGAAATTCTAACCGTCTTTTTCCGCTAAGCTTATTATCTGATGGAAGAGG-ATTGGCTGTGATTAGGTGTATGCTGAAC--TGCTCTGGTCGACCGTTTCACACACTTCA--TTTAA-GGTGAAACGAAGTTCTTGAATCGGTTTCATAATTGGC-TAAGC--AGGATAGCAGTAGTGTTGAGTTTTTGCGTGTTTGGATGTGCAGGGTGAAATGTC-TGTTTCTGAGAAGTCTCCAAGTTATTTGTATCACTTTAAAAATTCTTCTAACATTCGATTTTAGC--------TCAT-ATG-TTTCTCAAATTTCAGTTTGTATCC-T------GTTGGCTGATCT--CTCATGTAGGT-TATCtttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggtcattttgtgtgtcagacttagtaattgttgtgaaattctaaccgtctttttccgctaagcttattatctgatggaagaggattggctgtgattaggtgtatgctgaactgctctggtcgaccgtttcacacacttcatttaaggtgaaacgaagttcttgaatcggtttcataattggctaagcaggatagcagtagtgttgagtttttgcgtgtttggatgtgcagggtgaaatgtctgtttctgagaagtctccaagttatttgtatcactttaaaaattcttctaacattcgattttagctcatatgtttctcaaatttcagtttgtatcctgttggctgatctctcatgtaggttatcattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|11 : tgttcctccgaagttctgtcatgtgtttgttcctatcatactgtgtggtatcttttctgctctctgagagttctgtgggattttatgtgattgaatgtgaacatagcttttgtatagttgcgtgactcgtctcagggtattgtacctaattgtggactttcttgaaactgatcgctgcatgtaatgtgctcaattggttgttgagtgtaagctccttccgtattggaataggtttcttggagcgatggaaggtgcatcagcttttgcattatgccttcgtttatatcatgtctgtgattatggtgactgactagctcatcaggcttgtttctatcaattatgtttgtttattttgtcattttaactgaggataagatcaaatcgtcgaacagctgcctcctccaccagagtgtattatgatatctacaagtgtatgttcgtgagtaattgtgtttcggtgactatcaatataatcaagggctgttgaatcgtctgtgttatggatacttagttttacatttacatacgtacgaggttaaggttcttggtcatttttcttacatttgtaatatgcatatttgcacgcagtatggtaattaatgagttactatattcatggCTAACAT---GT----AC--------TCAT-TTGATTCCTCCA-TTTCATTTTGTATCT-CTTCTTCATTGGCTAATCC--AGA---TAGA-ATAGCTG-TGTTGATTTTCTCCATTAGACCCT-TTTCTC-TTGTAattcgtatcttacatagtgggtatatattccggatgttgatgacttcttccgtcaattatatgactcattctgtttcgacttgtaggttatacatagttcgcactctatagtcttcagtttatgaagttgtcatattcattctgttgacgttgtattctgcgattcctcgttttaaataacagttctttgtatatagcaatcacgactggtgacctggaatcagtatttgcattcagtccgggttcaacatgcccgcaaattttctcttgtttattct
gi|12 : ACA--------GGTTGTTG--C------TGCTAT-GGATAC-TAGTTTCAAAACAGTCCCA-N-NNNNNNNNNNNNNNNNNNNNNNNNCTATGTAG-GAATA
gi|13 : g--------GGCTGTTG--T------TGTTAT-GGATAC-TAGTTTCATTACAGTCCCAGA-AGGTTTGCCATTCAAGTATAATGCC-----AGAGAATACAGGTAAA-TTCA--GTTT---gtagagattca
gi|14 : TTTTTT-CCGTT-CAAAG-CTCTT--GGCTTT-CCC-CATGT-ACTAGCT-TTAGTTA
gi|15 : cattacagaaaatgcatagcttttcatccagttgggctccGCTGTT---T------TGCTAT-AGCTAC-TCGTTTCAAAACAGTCCCA-ACAGTTTTGTCATTTAAGTAAATTGCTA----AA-GAATATAGACAAG-TTCA--GTaa
gi|17 : aTC---TAGA-ATATCTGT-GTTGATGTTCTCCAATAGACCCTGTTTCTC-TTGTAGTACATTCACCATTTCA
gi|18 : TTTC-CCGTT-CGAAGTATCCT--GGTTTT-CCC-CATGT-ACTAGCTC-TAGTTAAAAAG-------
gi|19 : gggctcctCCT-CTTAATTGCTCTGCAGATTT---T-ATG-TATGTC-CCAGTTGTCATTTCCATTCTGACGA
gi|2 : TTTTTT-TTGTTTCAAAGTTTCCTTTGG-TTTACTT-CTTGT-GTTAGCTCTTAGTTATAAAGCTGGAAGTTAAATTTC--TCCTCATTGTAACC-AGTATTGTTGGAAGTTCAGTCATCTCATACACAGGCAAGTTCCCCT-CTTTATTGCTCTGCAGATTTG--T-ATGTTTTGTC-CCAG-TGTCATTTCCATTCTGACGAGTAATTTC---TCTGAGGAATTC-TTGGT-GCAATTT---TTTTCATGATTGC-TGAGTAC--AACT-----ACTAATTA-AAAT-GCCTGAAT-A---GTCTCAGGGTATG--A-C--AA--G-GG-A---TCT--AGA-CTA---C--CATGTA-TG-T-CTCAAT--GTTCGTGGA-TAT-AAACTCT---C--GTGTTTGG-AATA-TTTCTTTGGAGT--TGGAAGGATC-CATTCAAGCTTTTGCAT-TATGCATTCG-TTATTTTGTGGGTTTGTCCGA-TATCC-T--CTGGATAAAAACATC-AAGGCTTGTCT-TAT-AATT-----TGT--ATTT-GTCAATGTAAT-CC-AG-AA-A----TAAATC--TGA--AG-TGCCTCC-CCACAGGAG-------TAATATCT---AATGTA-GCT----A--AATT---TCTCGACAACCA--AACA--------GGCTGTTG--T------TGTTATGGGATAC-TAGTTTCATAACAGTCCCA-A-AGTATTGCCATTCAAGTAAATTGCC-----AG-GAATACAGGTAAGTTTCAAGGTTT---TGGCAGTTTTA-TGATT-TTG---AATCCTA-----CGTTTT-C-CTAAAACTA--ATCTGA--GAAGAGTCATTG--------TAGG-GAATA---AACT-TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGGTGAA--GAAGTT--TGAA-CGGTTTCATAATTG-CTTA-GCAGAGAA--GCAGCA---TTGATTTTT-----GCTTGG-----CAGGGT---ATG-C-T-TTT----GAAGTTCCT--GTAACTT-TATC--CTTAAA------TCTAACAT---AT----AC--------TCATCTTGATTCCTCAA-TTTCA-TTTGTATCTCTTTCTTCATTGGTTAATCCCACTC---TAGATAT-TCTGTTGTTGATTTTCTCCAATAGATTCTGTTTCTCTTTGTAGTACATTCACCATTGCA
gi|3 : TCTTTT-CCGTT-CAA-GTATCCT--GG-TT----C-CATGTTACT-GCTCTTAGTTA--AAG-------TTAAGTATCATTTTTCACTGTAACCCAGTATTATT---AGT-C-GTCATCTCA-AAACCAGCAAGTTCTC-T-CTTT-TGGTTCTGC-GAGTTGGGTGATG-CATTTCTCCAGTTGTCATT-CCATTCCT-CGATTGATTTCCCGTCTGA-GAATTCTTT-GT-GGA--TT---TTTTC-TGATTGC-TG-GTAC---TTA-----A-----TAGAAAT-GCCTG-AT-AAAGGTC-CAGGGTATT--A-C--AA--G-GGAA--TTCT--AGACCTA---CT-CATATA-TGCT-TTGAAT--GTT-GTTGA-TATAAAACTTT---C--GTGgc
gi|4 : cttctttcttcaaggtctttcactgatcctcatgtcgtagagatctatgtggagacgcatttacccttttgctgtttttttatctgtgcctgcctatttgttttgccagacaattaaaacataaacttttcccgccttgatttctcgcagttcctgtgtgtgatccatggtcaggtactggactgtggtcctacagaaatgcagtagtcatcgttggCTTTTACTGTT-CAAAGTTGCCT--GG-CTT-CCTGCTTGT-ATTAGATCT-AGTTATA----------------TTC--TGGTCACTGTAACC-AGCATTGTTG-AAGG-CAATCATTTCATTCACAA-CAAGTTCCCTTACC--ATTCCTCCACATATT-G--T-ATG-TATATC-TAAGTTGTTATCTCCATTCTAACGAGTAATTTC---TCTTA-AAAATC-CT-GTGGGA--CTGTATTTCCATTATTGT-TG-GTACTAACCGA----A-----TA-ACA----CTGAAGAA---GTGTCAGGGAATT--ACC--AA--G-TG-A--CTcctttaccacatctttttg
gi|5 : cttctgttgtcacacaagtatttttactgcatcctcctgtcctgtacatatactagtatggtgacgccaattacaccttttgcatgttttcttggatttgaagtctgtcactttgtttgccaagacaattaaaacgtaacttgtctgcatgtatcttgattttatcgagtttcctgttgtgctccaggtcacaggtcactggattgaagttttcattacagaaaattcatagattttcatccaaatgggttc--GAAGAGTCATTG--------TAGT-GAATA---AAC--TGC---GGT-G--CGTTT---ACA-TTCAAATTCAAAGATAAA--GACGTT--TGAA-CGTTTTCATAATTG-C-TA-GC--AAAA--GCAG-A---TTGAGTTTT-----GCTTGG-----CAGGAT---ATG-CTT-TTT----GAAG-TCCT--GTAACTTG-GTC--CTTAAA------TCTAACAT---AC----ACTCAATGAGTCAT-CTAATTCCTCAA-TTTCAGTTTGTATC----TCTTCATTGGTTAATCC--CTC---GAGA-ACATCTG-TGTTGATTTTCTCCAATAGATTCTGTTTCTC-TTGTAGTATATTCACCATTTCAtca
gi|6 : AATCTTA-----CTGTTTCC--TAAAC-TA--ATCTGA--GAAGAGTTATTG--------CATA-GAATA---AAAAATGT---GAT-G--CGTTT---ACA-TTCAAATTCAAAAGTGAA--GAAGTA--TAAA-CGTATTCATAATTC-C-TA-GC--AGAT--GCAG-A---TTTAGTTTA-----CCTTGG-----CAATAT---ATG-C-T-TTT----CCAATTCCT--GTAACc
gi|7 : tgacagtatatgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnngaattgTT-GTTGA-TAT-AAACTCT---CTCATGTT----ACTAATGTCTTTGGAGC--T---------------------TTGCATACATGGATTC-TTTATTTTGTGTATCTGTCTA--TAT-C-T--CT--CT-AAGACATCTAAAGCTTGTAT--AT-AATT-----TG-C-ATT-CGTCATTGTAAATCC-AGAAA-AAAATTGAAg
4 sequences could not be aligned to this reference sequence:
Unaligned ( gi|8 ): TTCTGTTGTTGCACAGGTATTTTTTTCACTGCACCTCCTGTGTGATACATTACTAGTGTTGGTGACGCCGATCACACTTTCTTTATCATGTTCTCGTATGTGGATAGTGCATTCTGCCACTTTTGTGTT
Unaligned ( gi|9 ): TTTGGAATTTTCATCTTCTTGTTTCAGGAATTCTCTTAAAAAGTCTGTGTAATAAGCACCACGGTGAACCGGAACGTATTGCCTTTCAGTTATTGTAACATCCATTTCTCTTTGGTTATCCTA
Unaligned ( gi|10 ): ACATAAACTTTTCCGCGAATTGATTTCTCGGATCTCTGTGATATGGTCGATACAGAGTTAATTTGCTGTAGTAGGTTGTCGTGTATCGTGTGTCTCTTCCGTTTAAACGTTTCCTACTATGTT
Unaligned ( gi|16 ): GGGTCCTCTGTTTTTAAGGTCTTCCACTCTGCAAGGATTCCACATGTTGCAGCAGATTTCCTATTGGAGACGTAAGCCCTTTTACTG