lowQualScore : 222222222222222222222222222222222222 111111111111111111111111111111111111111111 11111111111111111111111111111111111
lowQualScore : 11 4 1 4 1 999999999999999999999999999999999999 1 1 1 111 33 1 1 1 1 22 444444 1 55555555 2 3333 1 4444444 1 8888888888888888888888888888888888888888888888888888888888888888888888888888888 1 333333 1111 777777777777777777777777777777777777777 222222 111 222222222 000000000000000000000000000000000000000000 2 22222222 11 11 11 222 1 1 11111 111 1 44444444444444444444444444444444444 11111 11 333333 11 1 111111111 111 3333333333333333333333 111
lowQualScore : 22 6 0 7 0 5 888888888888888888888888888888888888 5 5 5 6 6 6 6 000 4 44 6 6 6 6 7 6 6 7 5 6 5 77 333333 5 2 22222222 2 0 7777 3 8888888 3 0 5 0000000000000000000000000000000000000000000000000000000000000000000000000000000 0 2 0 3 222222 22 8 9999 8 999999999999999999999999999999999999999 6 666666 111 6 444444444 66 6 222222222222222222222222222222222222222222 4 1 22 99999999 1 33 00 33 888 0 0 0 3 6 55 33333 2 888 0 2 55 44444444444444444444444444444444444 88888 6 11 666666 1 22 4 3 4 1 888888888 5 888 9999999999999999999999 8 44 777 0 0 2
lowQualScore : .. . . . . . .................................... . . . . . . . ... . .. . . . . . . . . . . . .. ...... . . ........ . . .... . ....... . . . ............................................................................... . . . . ...... .. . .... . ....................................... . ...... ... . ......... .. . .......................................... . . .. ........ . .. .. .. ... . . . . . .. ..... . ... . . .. ................................... ..... . .. ...... . .. . . . . ......... . ... ...................... . .. ... . . .
lowQualScore : 00 0 0 0 0 0 000000000000000000000000000000000000 0 0 0 0 0 0 0 555 0 00 0 0 0 0 0 0 0 0 0 0 0 55 555555 5 5 00000000 5 0 0000 3 3333333 2 0 0 8888888888888888888888888888888888888888888888888888888888888888888888888888888 5 0 6 2 444444 00 0 0000 0 333333333333333333333333333333333333333 0 000000 888 0 444444444 33 7 888888888888888888888888888888888888888888 2 8 88 00000000 2 22 22 22 222 8 0 0 2 5 55 00000 2 555 0 5 55 22222222222222222222222222222222222 00000 0 00 222222 0 44 3 0 9 7 333333333 0 333 2222222222222222222222 0 55 555 7 7 5
consensus : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATACATAACGCACTAGANNNATGGTTCGTAAGATTGCTANTAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGCTGTCCAACAAATTTTCTTTGTGGACTAGGNTTAAACAACTCTTGAANTGTTCGCATGTAACTTCACA-AATT-CTAT-GTATTACCAATTAT-ACCATTGTTGACAAGC-TCCCAAATTTTAAG-CTTGTACATTTTTN-AGCTTTTT---TTTGAAG-AAATTAATTTAT--TTT--ATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGC-GACGTCAA--ATTTTTCTCGCGGT-GTTNTAC-ATGTA---TNTTT----AN----AT------AACATGAAATCCTT---CTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-G-TG-----C-----------CCTN-AC---TCT-----ATCCGATAGAATGCGT-TGAACAGACGA-TTTGCT-GATTCCCATAATTTCC-TTC-AAGC-TCTCGTANGGTTCGTNGTCTGTCTT-C-C-CGAATAGNNTCATNCAG---------CACT---GT----ACCGG--TTTTG-TC-GATATT--CTN---C-GACCGGCC-TCTCTTTCCTGGCN----T---ATTGT-TCTC-ATATCCTTCAGAAAATA-A---------TTTGTGNC--NTTTGAACA-CCANAGA---GCGAAAAACATTNCC
Reference ( gi|1 ) : TACTGAATAC-TGGATCGGTAAGATTG---TCAAT-GATG-----CATATGT-----------TTCATGGTTAGTAAGATTGCTATCAATTGATGTAGTACATACGTAACACACTAGATTCATGGTTCGTAAGATTGCTATTAATATTTGTATATGCATACATAAAGTACAGGATTTGTGAAATCGTAAGATTGTTATAAATAGACGTAGATGTACGAGGGTTGTCC--CAAATTGTC---GTGGATTAGGCTTAAACAATTTTTGAAGTATTC-CATGTCAAGTCACA-AATTCCTATAATATTACCAATTAT-ATCATTATTCATCAGT-TCCCAAATTTTGAGATTTGTACATTTTTG-AGGTTTTC---TTTAAAG-AAATAAATTTAT--CTTTAATACATCAAGGCTGTGCTCGGC--CGGGCAACTTGC-AACGTCAA--TTTTTTCTCGCGGT-GTTGTAA-ATGTA---TATTT----AT----AT------AGTATGAAGTCCTT---TTT-TTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-G-TA-----C-----------CCTA-AC---CCT-----ATCCGATATAATGCGT-TAAACTGATGA-TTTGCT-GATTCCCATAATTTT--TTC-AAGC-TTTCGTAAGGTTTATAGTTTGTCTT-T-C-CGAATAGGTTTATTAAG---------C------GT----ACCAGAATTTTG-TT-AATATT--CTA---T-GACCGACG-TGTCATTCTTGGCC----T---ATTGT-TCTA-ATATCCTTCAGAAAATA-A---------TTGGTGGT--TTTTGAACA-CCACGGA---GCGAGAAACACTGTC
gi|2 : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATATATAATGCACTAGATTCATGGTTCGTAAGATTGCTAATAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGTTGTTC--CAAATTTTC---GTGGATTAAGCTTAAACA--TTTTGAAGTGTTC-CATGTAACTTCACA-AATACCTAT-ATATTACCAGTTAT-ATCATTGTTGATAAGT-TCCCAAATTTTGAGCTCGGTACATTTTTC-ATTTTATT---TTTGGAGAAAATTAACTTAT--TTTCAATACAACAAGGTTCTGCTCGGC--CGCGCAACTTGT-AACGTCAA--ATTTTTCTCGCGGT-GCTGTAC-ATGTA---TATTT----AT----AT------ACCATGCAATCC------TT-CTTTGTTTTTC-TCCAATTATTTTTTGAAGTCGATG-TACCCAA-A-G-TA-----C-----------CCTT-AC---TCT-----ATCCGATAGAATCCGT-TGAACAGATAA-TTTGCT-GATTCCCATAATTTC--TTC-AAGC-TTTCGTAAGGTTTATAGTCTGTCTT-T-C-CGAATAGGTTTATTCAG---------CACTT--GT----ATCAGAATTTTG-TC-GATATT--CTA---T-GACCGACG-TGTCTTTCTTGGCC----C---ATTGT-TCT
gi|18 : acatatacaacgTAATACATACATAACGCACTAGAAAAATGGTTCGTAAAATTGCTATTca
gi|9 : CGAGG-CTGTCCAATAAATT-TCTTTGTGGAC-AGGATTAAA--ACTC--AAATTATTCGCATGTAATTTCACAGAATT------GTA----CAATTGTGACCATTTTT----AGC-TCTC---TTTTT---TTTTT---TTTTTG-AG-------------AAA-AAATTAATT-AT--TTT----ACATCAAATTTGTA--CAGCAAC-GCCAATTTGTGAGTGTCAA--AATTTCCTCGCGTTAGTTATAACATG
gi|8 : A-AACTGTTATG-TATTACTAATTAT-ATGATTATTGACAAGT-AC-------TTAAAACTT-TGCACTTGCGTAGCTTTTA---T---AAG-A---AAATTTATTACTT--AT-CAATAAGGCTGAGCTC-GC--CG--------GC-GACGTCAA--ATCTTTTTCGAGGT-ATT-T-------------TTC----AG----GT------AACATGAAATCCTT---CTTGCTTTAATTTTCGTCA-A---TCTTGTAA---CGAGT-TACCCAA-A-G-TG-----C-----------aaatccttct
gi|3 : tgtatttttgcaTATTACCAATTAT-ACCATTGTTGACCAGCACCCCAAATTTCAAG-CTTGTACTTCATTC-AGCTTTTTATTTTTGAGA-AAATTAATT-AT--TTT----ACAATAAGGTTGTGCGTGGC--AACACAACTTGC-GACATAAAAATTTTCTCCCAGGGT-TTTTTAC-ATGTGAGCTGCCTGAGAAA----ATCCTTCAAACATGAAATCCTC---CCT-T---GTTTTTC-TTC-GTTTTTGA--AAAGCAGAGG-TACCCAGCGTG-TG-----CATATTGAATTTCCTG-AA---T-T-----ATCTGATAGAACGCGG-TGAACAGATG------CT-GATTCCTAAAATTTTC-TTCTAAGC-TCTCATACGGTCCAATGTCTGTCTTAC-C-CGAATAGTGTCATCCAG---------CATTGTTGT----GCCA---TTTTT-TCGAACATTTCCT----C-GACCAGCC-TCTCTTGCCTGGCA----T---ATTGT-TCTC-GCATCCTTCAGAAAATATT---------TTTGTGCC--ACTTGAACA-TCAAGGA---GCAAGAAACATTacac
gi|5 : TGTGCTTGGC--GGCGCACTTTGC-GACATCAA--TATTATCTCGCGAT-GCGTTAC-ACGTA---ACTTT----ATGCACAT------AACAGGAAATCCTTTGATTT-TCTTA-------------TTTTTTTTAAAGCCGAGG-TACCAGA-T-G-TG-----C----------------AC----------------ATA-AATA----------GACGA-TTTGCTAAATTCCC------------C-AATC-TT--GTACGGTTCGTCGCCTGTCTT-TAC-C------GTTT-----------------------------------TCTTG-TC-GATTTC--CTT---C-GACGGGCC-TCTCTTTCCTGGCG----T---GTTGT-CCCT-ATATCCCTCCG-AGATA-A---------TTTGTGtctgtgcaattctatcaattctaactttttgtgagactcagtttaggtcagtctgtgttccatgctaaaatttatgtctttttggtgtgcatgcagtgtttgacattttggcacctggagcagtatttacataatgtgtcataattatttggatcatgatagaaattttcgggtat
gi|12 : tTT-CTTTATTTTTC-TTC-AGATTTTTT-GAAGTCGAGA-TAACCAA-G-G-TA-----C-----------tcaagtgaacgaaacatttcagtaagattctctcattattaacttcttgtgagtctctgttggggtcaatccgagtttccatgcaaaatttcatataacccctcggtgcgccgcatttgaatctgacttcgccatttcgctcaacatttgcacctcccaaatgtcgcataatatgttaaa
gi|4 : tataacattaaaacaatccTTTAAAGTCGAGGATATCCAA-G-ATTACATATC-----------CCTATGCATTCCTAAATCATCTGATAAAATGCGTATGAATAGAAGATTTTGCT-TATTCCCTTAATTTCTGTCC-ACGCATCTC-TAA-------AATTTGCCTT-C-CTCGAATAGTGTCATACAGGAAAAAATCT------GTTTTAACCGG--TTTT--TC-ACTACT--TTGCCTC-GATCGGCGCTGT--TTCCTGGCCACAATGGAATTGTCCCCATATATCCTTCAGAAAAAA-AAAGAAAAACATGGTTGTCATGTTAAACAGCCACAGAAATGCATAAAACATTTTCacacgtacagggccgatgccttcctaaaagattcgatagaatgcggtgagcagacgat
gi|14 : T----ACC-GCGTTTTGGTC-AAT-TT--CTT---TCGGCCGATC-TCTCTTTCCTTGCG----T---ATTGT-TCTC-ATATCCTTCTGAAAATA-A---------TTtgatgcgattttctgtcaaatctcactcattaggattttcagtagggtcactcccaagttccgtaaaaatatcttcttggtgcgcctggttcgacgctaacatccctctttcagctggacaagacgtttatgcaacttccatcttgttaaaacgttatgccataaattcagtttaatatttttcatcatta
gi|15 : gcatcttACCAGCC-TCTCTTGCCTAGCA----T---ATTGC-TCTC-GCATCCTTCAGAAAATA-T---------TTTGTGtgcatccaatgaac
gi|17 : catccagcattgttgccattttttcgaaaatttccctca-TGTTAT-CTTTGCC----T-------T-T----ACATCATTCAGAAAATA-A---------TTGATGGC--TTTTGAACA-CCACAGA---GAGAAAAACACTGCC
gi|7 : tt---ATTGT-TCGC-ATACCCTTCAGAAAATA-A--------------------TTTGAACA-CCAGAAA---GCGA
gi|6 : TATTCTCCAGAAAATA-A---------TTTGTGCC--ATTAGAACA-CCAataatatatctgcaatttgtcaattttaacttcttgtgagtctctgttggagtcaatatgagttccattcaaaatctaatgaattactcgttgtgctgcatttgaagctgatgtcgccattttgctgggcttttatgtcataattcatttaaatattacaccataaagataaaattttccgggtatgtaaatgagtaactaaacaaagctact
5 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|10 ): AACATTTCTGTGAGATTCTGTCAATTTTAATTTTTTATGTTTCTCTCATCGGGTCAATCCGTGCCGTGACTTCTCGGTGTGCCGCGTTTGACGCTGACGTCACTATTGCACCCGCGTTTGACGTTTCACTCGGCATTTGCACCTCCATATACAATCGT
Unaligned ( gi|11 ): CCATTGGAACACCAGGGAATGAAACATTATTGCGCGATTTTTAACTTTTAGTGAGTCTGCTGAGGTCAATCCTTGTTCCGTGCAAAGTTTGTTAATTCTAGGTGCGCCGCGTCTGACGTCGCCATTTA
Unaligned ( gi|13 ): ATTGATTCACTGTTGGGGTCAATCCGAGATGTGACTTCTTGGTGCGCCGTGTTTGACATTGACATTTCACTGGACATTTGCTTTTCCATACTATCGCACGATATGTCATAACGT
Unaligned ( gi|16 ): ATTCATTTATATATTATGCCATACTGATAAAACTTTCCGGGTATATAAATGAGTATCTAAATAAAGCTCCTGTAC
Unaligned ( gi|19 ): CTGTTCGTTATCTTTGCCTTTACATTCCTCAGGAATGACTTGATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111
lowQualScore : 1 2 222 1 22222 44444444444 33 333 1111 2 1 3333333 11 111111111 111 222222222 333333333333333333333333333333333333 11 0000000000000000000000000000000000000000000000 1111 1111 1111 4444444444444444 2222 11 11111111111 111111111 11111111 111
lowQualScore : 5 4 0 3 111 5 77777 33333333333 3 2 2 0 333 1 88 4 4 2 77 00 7 777 88 1 6666 88 1 0 3 4 0 8888888 8 0 8 1 7777 11 66 444444444 1 8 8 3 444 66 8 0 1 3 0 777777777 1 1 99 77 6 4 99 666666666666666666666666666666666666 66 11 6 888 3 99 5 999 6666666666666666666666666666666666666666666666 5 99 7 8 0 22 8888 8 8 3 1 5555 7777 77 3 4444444444444444 2222 77 77 77777777777 1 555555555 55 66666666 4 66 2 777 6 55 111 1
lowQualScore : . . . . ... . ..... ........... . . . . ... . .. . . . .. .. . ... .. . .... .. . . . . . ....... . . . . .... .. .. ......... . . . . ... .. . . . . . ......... . . .. .. . . .. .................................... .. .. . ... . .. . ... .............................................. . .. . . . .. .... . . . . .... .... .. . ................ .... .. .. ........... . ......... .. ........ . .. . ... . .. ... .
lowQualScore : 5 0 0 0 000 5 00000 00000000000 0 5 5 7 000 0 00 0 0 5 33 77 3 777 00 0 7777 00 0 7 3 2 0 0000000 0 8 0 4 6666 88 22 666666666 0 0 8 2 000 66 0 8 0 8 8 000000000 4 0 22 77 7 0 22 222222222222222222222222222222222222 44 88 7 777 2 99 7 666 2222222222222222222222222222222222222222222222 2 77 8 0 8 00 4444 0 0 2 0 8888 4444 66 3 9999999999999999 1111 99 11 33333333333 0 000000000 55 11111111 4 11 8 111 7 22 777 0
consensus : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTTTC---GTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-NC-TATG-TATTACCAATTAT-ATCATTGTTGACNAGT-TCCCAAATTTCGAG-CTT-GTACATTT-TTCAGCTTTTT---TTTGAAG-AAATTAATTTATT--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGTA---TNTTT----AT----AT------AACATGAAATCC-TTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA-----------CC--TGACT--CTA-----TCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------C-TGTT---ACCG-G--TTT--TG-TCGA-TA---TC---CCTCGACCGGCCTCTCTTTCCTGGC----GT---ATTGTTCTC--GTATCCTTCAGAA--------AATA-ATTTG--TGNCAT-TTGAACA-CCACGGA---GCGAAAAACATTTCC
Reference ( family-2196 ) : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATACATAACGCACTAGANNNATGGTTCGTAAGATTGCTANTAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGCTGTCCAACAAATTTTCTTTGTGGACTAGGNTTAAACAACTCTTGAANTGTTCGCATGTAACTTCACA-AA--T-TC-TATG-TATTACCAATTAT-ACCATTGTTGACAAGC-TCCCAAATTTTAAG-CTT-GTACATTT-TTNAGCTTTTT---TTTGAAG-AAATTAATTTATT--TT--ATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAATTTTTCTCGC--GGTGTTNTACATGTA---TNTTT----AN----AT------AACATGAAATCC-TTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GC------------CC--TNACT--CTA-----TCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTANGGTTCGTNGTCTGTCTT-CC-CGAATAGNNTCATNCAGCA------C-TGT----ACCG-G--TTT--TG-TCGA-TA---TT---CTNCGACCGGCCTCTCTTTCCTGGC----NT---ATTGTTCTC--ATATCCTTCAGAA--------AATA-ATTTG--TGNCNT-TTGAACA-CCANAGA---GCGAAAAACATTNCC
gi|1 : TACTGAATAC-TGGATCGGTAAGATTG---TCAAT-GATG-----CATATGT-----------TTCATGGTTAGTAAGATTGCTATCAATTGATGTAGTACATACGTAACACACTAGATTCATGGTTCGTAAGATTGCTATTAATATTTGTATATGCATACATAAAGTACAGGATTTGTGAAATCGTAAGATTGTTATAAATAGACGTAGATGTACGAGGGTTGTCC--CAAATTGTC---GTGGATTAGGCTTAAACAATTTTTGAAGTATTC-CATGTCAAGTCACA-AA--T-TCCTATAATATTACCAATTAT-ATCATTATTCATCAGT-TCCCAAATTTTGAGATTT-GTACATTT-TTGAGGTTTTC---TTTAAAG-AAATAAATTTATC--TTTAATACATCAAGGCTGTGCTCGGC--CGGGCAACTTGCAA-CGTCAATTTTTTCTCGC--GGTGTTGTAAATGTA---TATTT----AT----AT------AGTATGAAGTCC-TTTTT-TTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------AC------------CC--TAACC--CTA-----TCCGATATAATGCGT-TAAACTGATGATTT-GCTGATTCCCATAATTT-T-TTC-AAGC-TTTCGTAAGGTTTATAGTTTGTCTT-TC-CGAATAGGTTTATTAAGC----------GT----ACCA-GAATTT--TG-TTAA-TA---TT---CTATGACCGACGTGTCATTCTTGGC----CT---ATTGTTCTA--ATATCCTTCAGAA--------AATA-ATTGG--TGGTTT-TTGAACA-CCACGGA---GCGAGAAACACTGTC
gi|12 : ----AT------AACATTAAAACAATCCTT-CTTTATTTTTC-TTC-AGATTTTTT-GAAGTCGAGA-TAACCAA-G-GT-------------ACACACGTACAGGGCCGATGCCTTCCTAAAAGATTCGATAGAATGCGG-TGAGCAGACGAT
gi|14 : tGCAT-----C-TTT----ACCGCG--TTT--TGGTCAA-TT---TC---TTTCGGCCGATCTCTCTTTCCTTGC----GT---ATTGTTCTC--ATATCCTTCTGAA--------AATA-ATTTG--CATCCA-ATGAAC
gi|15 : CATCCAGCA------T-TGTT---GCCA-T--TTT--T--TCGA-AAATTTC---CCTCAACCAGCCTCTCTTGCCTAGC----AT---ATTGCTCTC--GCATCCTTCAGAA--------AATA-TTTTG--TG
gi|17 : TTGCCTTT--ACATCATTCAGAA--------AATA-ATTGA--TGGCTT-TTGAACA-CCACAGA---GAGAAAAACACTGCC
gi|18 : tttgttatctTAATACATACATAACGCACTAGAAAAATGGTTCGTAAAATTGCTATT
gi|2 : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATATATAATGCACTAGATTCATGGTTCGTAAGATTGCTAATAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGTTGTTC--CAAATTTTC---GTGGATTAAGCTTAAACA--TTTTGAAGTGTTC-CATGTAACTTCACA-AA--TACC-TATA-TATTACCAGTTAT-ATCATTGTTGATAAGT-TCCCAAATTTTGAG-CTCGGTACATTT-TTCATTTTATT---TTTGGAGAAAATTAACTTATT--TTCAATACAACAAGGTTCTGCTCGGC--CGCGCAACTTGTAA-CGTCAAATTTTTCTCGC--GGTGCTGTACATGTA---TATTT----AT----AT------ACCATGCAATC----CTT-CTTTGTTTTTC-TCCAATTATTTTTTGAAGTCGATG-TACCCAA-A-GT-------------AC------------CC--TTACT--CTA-----TCCGATAGAATCCGT-TGAACAGATAATTT-GCTGATTCCCATAATTT-C-TTC-AAGC-TTTCGTAAGGTTTATAGTCTGTCTT-TC-CGAATAGGTTTATTCAGCA------CTTGT----ATCA-GAATTT--TG-TCGA-TA---TT---CTATGACCGACGTGTCTTTCTTGGC----CC---ATTGTTCTC--A
gi|3 : acatatacaacg-TATTACCAATTAT-ACCATTGTTGACCAGCACCCCAAATTTCAAG-CTT-GTACTTCA-TTCAGCTTTTTATTTTTGAGA-AAATTAATT-ATT--TT--A--CAATAAGGTTGTGCGTGGC--AACACAACTTGCGA-CATAAAAATTTTCTCCCAGGGTTTTTTACATGTGAGCTGCCTGAGAAA----ATCCTTCAAACATGAAATCC-TCCCT----TGTTTTTC-TTC-GTTTTTGA--AAAGCAGAGG-TACCCAGCGTGT-------------GCATATTGAATTT-CC--TGAAT---TA-----TCTGATAGAACGCGG-TGAACAGA-----T-GCTGATTCCTAAAATTTTC-TTCTAAGC-TCTCATACGGTCCAATGTCTGTCTTACC-CGAATAGTGTCATCCAGCA------T-TGTTGT-GCCA-T--TTT--T--TCGAACA---TTT--CCTCGACCAGCCTCTCTTGCCTGGC----AT---ATTGTTCTC--GCATCCTTCAGAA--------AATATTTTTG--TGCCAC-TTGAACA-TCAAGGA---GCAAGAAACATTT
gi|4 : TTTAAAGTCGAGGATATCCAA-G-ATTACATATCCCTATGCATT---------CC--TAAAT--C-A-----TCTGATAAAATGCGTATGAATAGAAGATTTTGCTTATTCCCTTAATTTCTGTCC-ACGCATCTC-TAAAATT-------TGCCTT-CCTCGAATAGTGTCATACAGGAAAAAATC-TGTTTTAACCG-G--TTT--T--TCAC-TA---CTTTGCCTCGATCGG-CGCTGTTTCCTGGCCACAATGGAATTGTCCCCATATATCCTTCAGAAAAAAAAAGAAAA-ACATGGTTGTCATGTTAAACAGCCACAGAAATGCATAAAACATTTTCtgtgcaattctatcaattctaactttttgtgagactcagtttaggtcagtctgtgttccatgctaaaatttatgtctttttggtgtgcatgcagtgtttgacattttggcacctggagcagtatttacataatgtgtcataattatttggatcatgatagaaattttcgggtat
gi|5 : TTGTGCTTGGC--GGCGCACTTTGCGA-CATCAATATTATCTCGC--GATGCGTTACACGTA---ACTTT----ATGCACAT------AACAGGAAATCC-TT------TGATTTTCT-T---ATTTTTTTT-AAAGCCGAGG-TACCAGA-T-GT-------------GC------------------AC---------------ATA-----------AATAGACGATTT-GCTAA--------ATTCCC---C-AA---TCTTGTACGGTTCGTCGCCTGTCTT---------------------------------T----ACCG-T--TTTCTTG-TCGA-TT---TC---CTTCGACGGGCCTCTCTTTCCTGGC----GT---GTTGTCCCT--ATATCCCTCCG-A--------GATA-ATTTG--TGTCAA-GTGAACtgatgcgattttctgtcaaatctcactcattaggattttcagtagggtcactcccaagttccgtaaaaatatcttcttggtgcgcctggttcgacgctaacatccctctttcagctggacaagacgtttatgcaacttccatcttgttaaaacgttatgccataaattcagtttaatatttttcatcatta
gi|6 : CTT--GTATTCTCCAGAA--------AATA-ATTTG--TGCCAT-TAGAACA-CCAG-----------AAACATTTgaaacatttcagtaagattctctcattattaacttcttgtgagtctctgttggggtcaatccgagtttccatgcaaaatttcatataacccctcggtgcgccgcatttgaatctgacttcgccatttcgctcaacatttgcacctcccaaatgtcgcataatatgttaaa
gi|7 : ---ATTGTTCGC--ATACCCTTCAGAA--------AATA-A-----------T-TTGAACA-CCAGAAA---GCGAATAATATtgtgcgattttgtcaatttgaacttcgtgcgagtccctgttggggtcaatcagatgtttgtgcacttcttggtgcaccttgtttgacactgacgtagccattttgttggacatttgcaactcctaactgttgcattgttataattcatttaataaatatcatgtcattatgataagttttgtgggtgtgtaaatgagtttctaaacaaaactcctacat
gi|8 : TGTATTTTTGCA-AAACT-GT-TATG-TATTACTAATTAT-ATGATTATTGACAAGT-------ACTTAAAA-CTT--TGCACTTGCGTAGCTTTTA---T---AAG-AA---AATTTATTACTT--AT-CAATAAGGCTGAGCTC-GC--CG--------GCGA-CGTCAAATCTTTTTCGA--GGTAT-------------TTTTC----AG----GT------AACATGAAATCC-TTCTTGCTTTAATTTTCGTCA-A---TCTTGTAA---CGAGT-TACCCAA-A-GT-------------GC------------atctgcaatttgtcaattttaacttcttgtgagtctctgttggagtcaatatgagttccattcaaaatctaatgaattactcgttgtgctgcatttgaagctgatgtcgccattttgctgggcttttatgtcataattcatttaaatattacaccataaagataaaattttccgggtatgtaaatgagtaactaaacaaagctact
gi|9 : CGAGG-CTGTCCAATAAATTT-CTTTGTGGAC-AGGATTAAA--ACTC--AAATTATTCGCATGTAATTTCACAGAA--T------TG-TA----CAATTGTGACCATTTTT----AGC-TCTC---TTTT-------------TTT-TT----TTTTT---TGAGAAA-AAATTAA-TTATT--T----TACATCAAATTTGTA--CAGCAACGC-CAATTTGTGAGTGTCAAAATTTCCTCGC-----GTTA-----GT--------------T----AT------AACATGAAATCC-TTCTacac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AACATTTCTGTGAGATTCTGTCAATTTTAATTTTTTATGTTTCTCTCATCGGGTCAATCCGTGCCGTGACTTCTCGGTGTGCCGCGTTTGACGCTGACGTCACTATTGCACCCGCGTTTGACGTTTCACTCGGCATTTGCACCTCCATATACAATCGT
Unaligned ( gi|11 ): CCATTGGAACACCAGGGAATGAAACATTATTGCGCGATTTTTAACTTTTAGTGAGTCTGCTGAGGTCAATCCTTGTTCCGTGCAAAGTTTGTTAATTCTAGGTGCGCCGCGTCTGACGTCGCCATTTA
Unaligned ( gi|13 ): ATTGATTCACTGTTGGGGTCAATCCGAGATGTGACTTCTTGGTGCGCCGTGTTTGACATTGACATTTCACTGGACATTTGCTTTTCCATACTATCGCACGATATGTCATAACGT
Unaligned ( gi|16 ): ATTCATTTATATATTATGCCATACTGATAAAACTTTCCGGGTATATAAATGAGTATCTAAATAAAGCTCCTGTAC
Unaligned ( gi|19 ): CTGTTCGTTATCTTTGCCTTTACATTCCTCAGGAATGACTTGATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 1 22222 44444444444 11 11 1111 1 1 333333 1 1111 1 111 11 222222222 666666666666666666666666666 11 2222222 0000000000000000000000000000000000000000000000000000000 1111 1111 11111 333333333333333333333333 11 222222 22222222 2222222222 111
lowQualScore : 5 1 5 1 111 5 77777 33333333333 1 1 1 0 22 1 1 1 6 88 88 7 6666 7 3 1 2 0 555555 0 0 8 1 6666 8 88 99999 4444 4 44 0 3 444 0 11 8 0 1 3 0 8 333333333 1 1 99 77 6 1 99 1 1 999999999999999999999999999 6666 11 6 0000000 1 5 999 8888888888888888888888888888888888888888888888888888888 5 99 7 8 0 22 8888 8 8 3 0 0000 33333 77 3 333333333333333333333333 77 77 111111 66 0 00000000 0 66 2222222222 66 3 5 6 44 111
lowQualScore : . . . . ... . ..... ........... . . . . .. . . . . .. .. . .... . . . . . ...... . . . . .... . .. ..... .... . .. . . ... . .. . . . . . . ......... . . .. .. . . .. . . ........................... .... .. . ....... . . ... ....................................................... . .. . . . .. .... . . . . .... ..... .. . ........................ .. .. ...... .. . ........ . .. .......... .. . . . .. ...
lowQualScore : 5 0 0 0 000 5 00000 00000000000 0 0 0 7 00 0 0 0 7 33 33 3 7777 3 3 2 0 0 888888 0 8 0 4 0000 0 88 66666 2222 0 88 0 2 000 8 00 0 8 0 8 8 0 444444444 4 0 22 77 7 0 22 0 5 222222222222222222222222222 6666 88 7 3333333 4 7 666 8888888888888888888888888888888888888888888888888888888 2 77 8 0 8 00 4444 0 0 2 6 0000 22222 66 7 999999999999999999999999 99 11 000000 11 7 33333333 7 11 8888888888 11 0 7 7 77 777
consensus : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-CCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTT-GTACGTTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-T--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------AT-TTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------TTGTT---A--CCG-G--TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
Reference ( family-2196 ) : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-NCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTT-GTACATTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-T--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------ATNTTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------CTGTT---A--CCG-G--TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAAAAACATTTCC
gi|1 : TACTGAATAC-TGGATCGGTAAGATTG---TCAAT-GATG-----CATATGT-----------TTCATGGTTAGTAAGATTGCTATCAATTGATGTAGTACATACGTAACACACTAGATTCATGGTTCGTAAGATTGCTATTAATATTTGTATATGCATACATAAAGTACAGGATTTGTGAAATCGTAAGATTGTTATAAATAGACGTAGATGTACGAGGGTTGTCC--CAAATTG--TCGTGGATTAGGCTTAAACAATTTTTGAAGTATTC-CATGTCAAGTCACA-AAT-T-CCTATAATATTACCAATTAT-ATCATTATTCATCAGT-TCCC-AAATTTTGAGATTT-GTACATTTTTGAGGTTTTC---TTTAA--AG-AAATAAATTTATCT--TT-AATACATCAAGGCTGTGCTCGGC--CGGGCAACTTGCAA-CGTCAATTTTTTCTCGC--GGTGTTGTAAATGT---------------ATATTTAT----ATAGTATGAAGTC-CTTTTT-TTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------AC-----------C----------CTAA---CC--CT-----ATCCGATATAATGCGT-TAAACTGATGATTT-GCTGATTCCCATAATTT-T-TTC-AAGC-TTTCGTAAGGTTTATAGTTTGTCTT-TC-CGAATAGGTTTATTAAGCG----------T---A--CCA-GAATT--TTG-TTAA-TA---TT-CTATGACCGACGTGTCATTCTTGGC-------CTATTGTTCTAATAT--CCTTCAGAAAATA-A--------TTGG--TGGTTT-TTGAACA-CCACGGA---GCGAGAAACACT
gi|12 : T----ATAACATTAAAACAATCCTT-CTTTATTTTTC-TTC-A-GATTTTTTGAAGTCGAGA-TAACCAA-G-GT-------------ACA----------CACGTACAGGGCCGATGCCTTCCTAAAAGATTCGATAGAATGCGG-TGAGCAGACGATgtc
gi|14 : GCA------TCTTT---A--CCGCG--TT--TTGGTCAA-TT---TC-TTTCGGCCGATCTCTCTTTCCTTGC-------GTATTGTTCTCATAT--CCTTCTGAAAATA-A--------TTTG--
gi|15 : CATCCAGCA------TTGTT---G--CCA-T--TT--TT--TCGA-AAATTTC-CCTCAACCAGCCTCTCTTGCCTAGC-------ATATTGCTCTCGCAT--CCTTCAGAAAATA-T--------TTTG--TGcatccaatgaac
gi|17 : TTGCCTTTACAT--CATTCAGAAAATA-A--------TTGA--TGGCTT-TTGAACA-CCACAGA---GAGAAAAACACTGCC
gi|18 : tttgttatctTAATACATACATAACGCACTAGAAAAATGGTTCGTAAAATTGCTATT
gi|2 : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATATATAATGCACTAGATTCATGGTTCGTAAGATTGCTAATAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGTTGTTC--CAAATTT--TCGTGGATTAAGCTTAAACA--TTTTGAAGTGTTC-CATGTAACTTCACA-AA--TACCTAT-ATATTACCAGTTAT-ATCATTGTTGATAAGT-TCCC-AAATTTTGAG-CTCGGTACATTTTTCATTTTATT---TTTGG--AGAAAATTAACTTAT-T--TTCAATACAACAAGGTTCTGCTCGGC--CGCGCAACTTGTAA-CGTCAAATTTTTCTCGC--GGTGCTGTACATGT---------------ATATTTAT----ATACCATGCAATC----CTT-CTTTGTTTTTC-TCCAATTATTTTTTGAAGTCGATG-TACCCAA-A-GT-------------AC-----------C----------CTTA---CT--CT-----ATCCGATAGAATCCGT-TGAACAGATAATTT-GCTGATTCCCATAATTT-C-TTC-AAGC-TTTCGTAAGGTTTATAGTCTGTCTT-TC-CGAATAGGTTTATTCAGCA------CTTGT---A--TCA-GAATT--TTG-TCGA-TA---TT-CTATGACCGACGTGTCTTTCTTGGC-------CCATTGTTCTC
gi|3 : acatatacaacgTATTACCAATTAT-ACCATTGTTGACCAGCACCCC-AAATTTCAAG-CTT-GTACTTCATTCAGCTTTTTATTTTTGA--GA-AAATTAATT-AT-T--TT-A---CAATAAGGTTGTGCGTGGC--AACACAACTTGCGA-CATAAAAATTTTCTCCCAGGGTTTTTTACATGTGAGCTGCCTGAGAAAATCCTT-C----A-AACATGAAATC-CTCCCT----TGTTTTTC-TTC-GTTTTTGA--AAAGCAGAGG-TACCCAGCGTGT-------------GCATATTGAATTTC----------CTGA---AT---T-----ATCTGATAGAACGCGG-TGAACAGA-----T-GCTGATTCCTAAAATTTTC-TTCTAAGC-TCTCATACGGTCCAATGTCTGTCTTACC-CGAATAGTGTCATCCAGCA------TTGTT---GTGCCA-T--TT--TT--TCGAACA---TTTCCTCGACCAGCCTCTCTTGCCTGGC-------ATATTGTTCTCGCAT--CCTTCAGAAAATATT--------TTTG--TGCCAC-TTGAACA-TCAAGGA---GCAAGAAACATTTCa
gi|4 : TTTAAAGTCGAGGATATCCAA-G-ATTACATATCCCTATGCATT--------C----------CTAA---AT--C------ATCTGATAAAATGCGTATGAATAGAAGATTTTGCTTATTCCCTTAATTTCTGTCC-ACGCATCTC-TAAAATT-------TGCCTT-CCTCGAATAGTGTCATACAGGAAAAAATCTGTTTTAA--CCG-G--TT--TT--TCAC-TACTTTG-CCTCGATCGGCG-CTGTTTCCTGGCCACAATGGAATTGTCCCCATATATCCTTCAGAAAAAA-AAAGAAAAACATGGTTGTCATGTTAAACAGCCACAGAAATGCATAAAACATTTTCtgtgcaattctatcaattctaactttttgtgagactcagtttaggtcagtctgtgttccatgctaaaatttatgtctttttggtgtgcatgcagtgtttgacattttggcacctggagcagtatttacataatgtgtcataattatttggatcatgatagaaattttcgggtat
gi|5 : TTGTGCTTGGC--GGCGCACTTTGCGA-CATCAATATTATCTCGC--GATGCGTTACACGT---------------AACTTTATGCACATAACAGGAAATC-CT------TTGATTTTCT-T---A-TTTTTTTTAAAGCCGAGG-TACCAGA-T-GT-------------GCA----------C---------------------------------ATA-----------AATAGACGATTT-GCTA--------AATTCCC---C-AA---TCTTGTACGGTTCGTCGCCTGTCT---------------------------------TT---A--CCG-T--TTTCTTG-TCGA-TT---TC-CTTCGACGGGCCTCTCTTTCCTGGC-------GTGTTGTCCCTATAT--CCCTCCG-AGATA-A--------TTTG--TGTCAA-GTGAACtgatgcgattttctgtcaaatctcactcattaggattttcagtagggtcactcccaagttccgtaaaaatatcttcttggtgcgcctggttcgacgctaacatccctctttcagctggacaagacgtttatgcaacttccatcttgttaaaacgttatgccataaattcagtttaatatttttcatcatta
gi|6 : CTTGTAT--TCTCCAGAAAATA-A--------TTTG--TGCCAT-TAGAACA-CC-----------AGAAACATTTCgaaacatttcagtaagattctctcattattaacttcttgtgagtctctgttggggtcaatccgagtttccatgcaaaatttcatataacccctcggtgcgccgcatttgaatctgacttcgccatttcgctcaacatttgcacctcccaaatgtcgcataatatgttaaa
gi|7 : ATTGTTCGCATAC--CCTTCAGAAAATA--------------------AT-TTGAACA-CCAGAAA---GCGAATAATATATCtgtgcgattttgtcaatttgaacttcgtgcgagtccctgttggggtcaatcagatgtttgtgcacttcttggtgcaccttgtttgacactgacgtagccattttgttggacatttgcaactcctaactgttgcattgttataattcatttaataaatatcatgtcattatgataagttttgtgggtgtgtaaatgagtttctaaacaaaactcctacat
gi|8 : TGTATTTTTGCA-AAACT-GTTAT-GTATTACTAATTAT-ATGATTATTGACAAGT-ACTTAAAACTTTGCA-CTT-G--CGT-----AGCTTTTA---T---A--AG-AA---AATTTAT-TACTT--AT-CAATAAGGCTGAGCTC-GC--CG--------GCGA-CGTCAAATCTTTTTCGA--GGTATTTTTCAGG-----------------------------TAACATGAAATC-CTTCTTGCTTTAATTTTCGTCA-A---TCTTGTAA---CGAGT-TACCCAA-A-GT-------------GCA----------C----------tgcaatttgtcaattttaacttcttgtgagtctctgttggagtcaatatgagttccattcaaaatctaatgaattactcgttgtgctgcatttgaagctgatgtcgccattttgctgggcttttatgtcataattcatttaaatattacaccataaagataaaattttccgggtatgtaaatgagtaactaaacaaagctact
gi|9 : CGAGG-CTGTCCAATAAATTTCTTTGTGGAC-AGGATTAAA--ACTC--AAATTATTCGCATGTAATTTCACAGAA--T-----T-GTA----CAATTGTGACCATTTTT----AGC-TCTC-------------TT------TTTTT----TTTTT---TTTGAGAAA-AAATTAA-TTAT-T--T----TACATCAAATTTGTA--CAGCAACGC-CAATTTGTGAGTGTCAAAATTTCCTCGC-----GTTA-----GT----------------------T----ATAACATGAAATC-CTTCTac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AACATTTCTGTGAGATTCTGTCAATTTTAATTTTTTATGTTTCTCTCATCGGGTCAATCCGTGCCGTGACTTCTCGGTGTGCCGCGTTTGACGCTGACGTCACTATTGCACCCGCGTTTGACGTTTCACTCGGCATTTGCACCTCCATATACAATCGT
Unaligned ( gi|11 ): CCATTGGAACACCAGGGAATGAAACATTATTGCGCGATTTTTAACTTTTAGTGAGTCTGCTGAGGTCAATCCTTGTTCCGTGCAAAGTTTGTTAATTCTAGGTGCGCCGCGTCTGACGTCGCCATTTA
Unaligned ( gi|13 ): ATTGATTCACTGTTGGGGTCAATCCGAGATGTGACTTCTTGGTGCGCCGTGTTTGACATTGACATTTCACTGGACATTTGCTTTTCCATACTATCGCACGATATGTCATAACGT
Unaligned ( gi|16 ): ATTCATTTATATATTATGCCATACTGATAAAACTTTCCGGGTATATAAATGAGTATCTAAATAAAGCTCCTGTAC
Unaligned ( gi|19 ): CTGTTCGTTATCTTTGCCTTTACATTCCTCAGGAATGACTTGATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 1 22222 44444444444 11 11 1111 1 1 333333 1 111111 1 111 11 222222222 66666666666666666666666666666666666 11 2222222 0000000000000000000000000000000000000000000000000000000 1111 1111 11111 333333333333333333333333 11 222222 22222222 2222222222 11111111
lowQualScore : 5 1 5 1 111 5 77777 33333333333 1 1 1 0 22 1 1 1 6 88 88 7 6666 7 3 1 2 0 333333 0 0 8 1 6666 8 88 99999 555555 44 0 3 444 0 11 8 0 1 3 0 8 333333333 1 1 99 77 6 1 99 44444444444444444444444444444444444 6666 11 6 0000000 1 5 999 8888888888888888888888888888888888888888888888888888888 5 99 7 8 0 22 8888 8 8 3 0 0000 33333 77 3 555555555555555555555555 77 77 111111 66 0 00000000 0 66 2222222222 66 3 5 5 77777777 22
lowQualScore : . . . . ... . ..... ........... . . . . .. . . . . .. .. . .... . . . . . ...... . . . . .... . .. ..... ...... .. . . ... . .. . . . . . . ......... . . .. .. . . .. ................................... .... .. . ....... . . ... ....................................................... . .. . . . .. .... . . . . .... ..... .. . ........................ .. .. ...... .. . ........ . .. .......... .. . . . ........ ..
lowQualScore : 5 0 0 0 000 5 00000 00000000000 0 0 0 7 00 0 0 0 7 33 33 3 7777 3 3 2 0 0 888888 0 8 0 4 0000 0 88 66666 666666 88 0 2 000 8 00 0 8 0 8 8 0 444444444 4 0 22 77 7 0 22 77777777777777777777777777777777777 6666 88 7 3333333 4 7 666 8888888888888888888888888888888888888888888888888888888 2 77 8 0 8 00 4444 0 0 2 6 0000 22222 66 7 666666666666666666666666 99 11 000000 11 7 33333333 7 11 8888888888 11 0 7 7 00000000 44
consensus : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-CCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTT-GTACGTTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-T--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------AT-TTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------TTGTT---A--CCG-G--TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
Reference ( family-2196 ) : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-CCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTT-GTACGTTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-T--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------AT-TTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------TTGTT---A--CCG-G--TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
gi|1 : TACTGAATAC-TGGATCGGTAAGATTG---TCAAT-GATG-----CATATGT-----------TTCATGGTTAGTAAGATTGCTATCAATTGATGTAGTACATACGTAACACACTAGATTCATGGTTCGTAAGATTGCTATTAATATTTGTATATGCATACATAAAGTACAGGATTTGTGAAATCGTAAGATTGTTATAAATAGACGTAGATGTACGAGGGTTGTCC--CAAATTG--TCGTGGATTAGGCTTAAACAATTTTTGAAGTATTC-CATGTCAAGTCACA-AAT-T-CCTATAATATTACCAATTAT-ATCATTATTCATCAGT-TCCC-AAATTTTGAGATTT-GTACATTTTTGAGGTTTTC---TTTAA--AG-AAATAAATTTATCT--TT-AATACATCAAGGCTGTGCTCGGC--CGGGCAACTTGCAA-CGTCAATTTTTTCTCGC--GGTGTTGTAAATGT---------------ATATTTAT----ATAGTATGAAGTC-CTTTTT-TTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------AC-----------C----------CTAA---CC--CT-----ATCCGATATAATGCGT-TAAACTGATGATTT-GCTGATTCCCATAATTT-T-TTC-AAGC-TTTCGTAAGGTTTATAGTTTGTCTT-TC-CGAATAGGTTTATTAAGCG----------T---A--CCA-GAATT--TTG-TTAA-TA---TT-CTATGACCGACGTGTCATTCTTGGC-------CTATTGTTCTAATAT--CCTTCAGAAAATA-A--------TTGG--TGGTTT-TTGAACA-CCACGGA---GCGAGAAACACT
gi|12 : T----ATAACATTAAAACAATCCTT-CTTTATTTTTC-TTC-A-GATTTTTTGAAGTCGAGA-TAACCAA-G-GT-------------ACA----------CACGTACAGGGCCGATGCCTTCCTAAAAGATTCGATAGAATGCGG-TGAGCAGACGATgtc
gi|14 : GCA------TCTTT---A--CCGCG--TT--TTGGTCAA-TT---TC-TTTCGGCCGATCTCTCTTTCCTTGC-------GTATTGTTCTCATAT--CCTTCTGAAAATA-A--------TTTG--
gi|15 : CATCCAGCA------TTGTT---G--CCA-T--TT--TT--TCGA-AAATTTC-CCTCAACCAGCCTCTCTTGCCTAGC-------ATATTGCTCTCGCAT--CCTTCAGAAAATA-T--------TTTG--TGcatccaatgaac
gi|17 : TTGCCTTTACAT--CATTCAGAAAATA-A--------TTGA--TGGCTT-TTGAACA-CCACAGA---GAGAAAAACACTGCC
gi|18 : tttgttatctTAATACATACATAACGCACTAGAAAAATGGTTCGTAAAATTGCTATT
gi|2 : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATATATAATGCACTAGATTCATGGTTCGTAAGATTGCTAATAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGTTGTTC--CAAATTT--TCGTGGATTAAGCTTAAACA--TTTTGAAGTGTTC-CATGTAACTTCACA-AA--TACCTAT-ATATTACCAGTTAT-ATCATTGTTGATAAGT-TCCC-AAATTTTGAG-CTCGGTACATTTTTCATTTTATT---TTTGG--AGAAAATTAACTTAT-T--TTCAATACAACAAGGTTCTGCTCGGC--CGCGCAACTTGTAA-CGTCAAATTTTTCTCGC--GGTGCTGTACATGT---------------ATATTTAT----ATACCATGCAATC----CTT-CTTTGTTTTTC-TCCAATTATTTTTTGAAGTCGATG-TACCCAA-A-GT-------------AC-----------C----------CTTA---CT--CT-----ATCCGATAGAATCCGT-TGAACAGATAATTT-GCTGATTCCCATAATTT-C-TTC-AAGC-TTTCGTAAGGTTTATAGTCTGTCTT-TC-CGAATAGGTTTATTCAGCAC-----TTG-T---A--TCA-GAATT--TTG-TCGA-TA---TT-CTATGACCGACGTGTCTTTCTTGGC-------CCATTGTTCTC
gi|3 : acatatacaacgTATTACCAATTAT-ACCATTGTTGACCAGCACCCC-AAATTTCAAG-CTT-GTACTTCATTCAGCTTTTTATTTTTGA--GA-AAATTAATT-AT-T--TT-A---CAATAAGGTTGTGCGTGGC--AACACAACTTGCGA-CATAAAAATTTTCTCCCAGGGTTTTTTACATGTGAGCTGCCTGAGAAAAT-CCTTC----A-AACATGAAATC-CTCCCT----TGTTTTTC-TTC-GTTTTTGA--AAAGCAGAGG-TACCCAGCGTGT-------------GCATATTGAATTTC----------CTGA---AT---T-----ATCTGATAGAACGCGG-TGAACAGA-----T-GCTGATTCCTAAAATTTTC-TTCTAAGC-TCTCATACGGTCCAATGTCTGTCTTACC-CGAATAGTGTCATCCAGCA------TTGTT---GTGCCA-T--TT--TT--TCGAACA---TTTCCTCGACCAGCCTCTCTTGCCTGGC-------ATATTGTTCTCGCAT--CCTTCAGAAAATATT--------TTTG--TGCCAC-TTGAACA-TCAAGGA---GCAAGAAACATTTCa
gi|4 : TTTAAAGTCGAGGATATCCAA-G-ATTACATATCCCTATGCATT--------C----------CTAA---AT--C------ATCTGATAAAATGCGTATGAATAGAAGATTTTGCTTATTCCCTTAATTTCTGTCC-ACGCATCTC-TAAAATT-------TGCCTT-CCTCGAATAGTGTCATACAGGAAAAAATCTGTTTTAA--CCG-G--TT--TT--TCAC-TACTTTG-CCTCGATCGGCG-CTGTTTCCTGGCCACAATGGAATTGTCCCCATATATCCTTCAGAAAAAA-AAAGAAAAACATGGTTGTCATGTTAAACAGCCACAGAAATGCATAAAACATTTTCtgtgcaattctatcaattctaactttttgtgagactcagtttaggtcagtctgtgttccatgctaaaatttatgtctttttggtgtgcatgcagtgtttgacattttggcacctggagcagtatttacataatgtgtcataattatttggatcatgatagaaattttcgggtat
gi|5 : TTGTGCTTGGC--GGCGCACTTTGCGA-CATCAATATTATCTCGC--GATGCGTTACACGTA--------------AC-TTTATGCACATAACAGGAAATC-CT------TTGATTTTCT-T---A-TTTTTTTTAAAGCCGAGG-TACCAGA-T-GT-------------GCA----------C---------------------------------ATA-----------AATAGACGATTT-GCTA--------AATTCCC---C-AA---TCTTGTACGGTTCGTCGCCTGTCT---------------------------------TT---A--CCG-T--TTTCTTG-TCGA-TT---TC-CTTCGACGGGCCTCTCTTTCCTGGC-------GTGTTGTCCCTATAT--CCCTCCG-AGATA-A--------TTTG--TGTCAA-GTGAAC----------------GAAACATTTCtgatgcgattttctgtcaaatctcactcattaggattttcagtagggtcactcccaagttccgtaaaaatatcttcttggtgcgcctggttcgacgctaacatccctctttcagctggacaagacgtttatgcaacttccatcttgttaaaacgttatgccataaattcagtttaatatttttcatcatta
gi|6 : CTTGTAT--TCTCCAGAAAATA-A--------TTTG--TGCCAT-TAGAACA-CC-----------AGAAACATTTCagtaagattctctcattattaacttcttgtgagtctctgttggggtcaatccgagtttccatgcaaaatttcatataacccctcggtgcgccgcatttgaatctgacttcgccatttcgctcaacatttgcacctcccaaatgtcgcataatatgttaaa
gi|7 : ATTGTTCGCATAC--CCTTCAGAAAATA--------------------AT-TTGAACA-CCAGAAA---GCGAATAATATATCtgtgcgattttgtcaatttgaacttcgtgcgagtccctgttggggtcaatcagatgtttgtgcacttcttggtgcaccttgtttgacactgacgtagccattttgttggacatttgcaactcctaactgttgcattgttataattcatttaataaatatcatgtcattatgataagttttgtgggtgtgtaaatgagtttctaaacaaaactcctacat
gi|8 : TGTATTTTTGCA-AAACT-GTTAT-GTATTACTAATTAT-ATGATTATTGACAAGT-ACTTAAAACTTTGCA-CTT-G--CGT-----AGCTTTTA---T---A--AG-AA---AATTTAT-TACTT--AT-CAATAAGGCTGAGCTC-GC--CG--------GCGA-CGTCAAATCTTTTTCGA--GGTATT------------------------T-TTCAG----GTAACATGAAATC-CTTCTTGCTTTAATTTTCGTCA-A---TCTTGTAA---CGAGT-TACCCAA-A-GT-------------GCA----------C----------tgcaatttgtcaattttaacttcttgtgagtctctgttggagtcaatatgagttccattcaaaatctaatgaattactcgttgtgctgcatttgaagctgatgtcgccattttgctgggcttttatgtcataattcatttaaatattacaccataaagataaaattttccgggtatgtaaatgagtaactaaacaaagctact
gi|9 : CGAGG-CTGTCCAATAAATTTCTTTGTGGAC-AGGATTAAA--ACTC--AAATTATTCGCATGTAATTTCACAGAA--T-----T-GTA----CAATTGTGACCATTTTT----AGC-TCTC-------------TT------TTTTT----TTTTT---TTTGAGAAA-AAATTAA-TTAT-T--T----TACATCAAATTTGTA--CAGCAACGC-CAATTTGTGAGTGTCAAAATTTCCTCGC-----GTTA-----GT----------------------T----ATAACATGAAATC-CTTCTac
blockSeqs : A T . T CTA T TAGTA AACGCACTAGA A C G AA T T C G AA CT T CA T G C A G ACTGT . G G GATA A AA TGAG GGTACA TT C T ATT GA A T C . TTCAATA A G AA CG G T AG TTACATGTGAGCTGCCTGAGAAAATCCTTC AATC GC G CCAATTA T A CGT ACACACGTACAGGGCCGATGCCTTCCTAAAAG G TA C T AT CTGT T A G TATA TACC GT C AAAAATCTGTTTTAACCGG TC GG AAATT TT CACAATGG AT AAAGAAAAA GT G G G ACAGAAAT AG
blockSeqs : . . . . AC . . T G . TACC . . G GACC . A CAAG GTACT CA C C . . . T T . ACTTAT A G . CA . A . TTACACGTAACTTTATGCAC CTC C . TCGTTT T . G TACATATCCCTATGCATTCCTAAATC G G T . AA TCT . . A CAAT TCCT TG T CTTGTATCAGAA . G TACTT C G . TT . C . . ACAGA CA
blockSeqs : T A . T . . A GACA . A TGCA GCG TT . C . . . T T . TTA A G . CG . A . GTACATGTATATTTAT CTT C . TCAGA T . A GCATATTGAATTTCCTGAATT G T A . TT CT . . G CGTC TTC TG C TTGTTGTGCCAT . G ACA C A . A . T . . AAGGA CA
blockSeqs : . T . . . . . . . . . . . . . . TTA T A . C . T . TTTCAG CTT . . ATT T . G ACCCTTACTCT A G C . . CC . . . . . . A TCTTTACCGCG . . TT T C . T . T . . AGAAA CG
blockSeqs : . . . . A . AGTT CT . . CAA G . T GCAC . . . . TTGTTGCCAT . . TA G A . A . C . . . .
blockSeqs : . . . A TTACCGT . . TT C G . A . . . . . .
blockSeqs : . A .
blockSeqs : . . .
blockSeqCons : CGAG* GC**** TTA****** TCGATTA TC*** TTGTTACCGN************** G*
originalCons : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-CCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTT-GTACGTTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-T--TT-AATACAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------AT-TTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TCC-ATTTTTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTT-CC-CGAATAGNNTCATCCAGCA------TTGTT---A--CCG-G--TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
finalCons : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCA-AA--T-CCTAT-GTATTACCAATTAT-ATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTTGC----TTTTTCAGCTTTTT---TTTGA--AG-AAATTAATTTAT-TTTA------CAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------AT-TTTAT----ATAACATGAAATC-CTTCTT-CTTTATTTTTC-TTCGATTATTTTTTAAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTTC---CGAATAGNNTCATCCAGCATTGTTACCGN--------------TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AACATTTCTGTGAGATTCTGTCAATTTTAATTTTTTATGTTTCTCTCATCGGGTCAATCCGTGCCGTGACTTCTCGGTGTGCCGCGTTTGACGCTGACGTCACTATTGCACCCGCGTTTGACGTTTCACTCGGCATTTGCACCTCCATATACAATCGT
Unaligned ( gi|11 ): CCATTGGAACACCAGGGAATGAAACATTATTGCGCGATTTTTAACTTTTAGTGAGTCTGCTGAGGTCAATCCTTGTTCCGTGCAAAGTTTGTTAATTCTAGGTGCGCCGCGTCTGACGTCGCCATTTA
Unaligned ( gi|13 ): ATTGATTCACTGTTGGGGTCAATCCGAGATGTGACTTCTTGGTGCGCCGTGTTTGACATTGACATTTCACTGGACATTTGCTTTTCCATACTATCGCACGATATGTCATAACGT
Unaligned ( gi|16 ): ATTCATTTATATATTATGCCATACTGATAAAACTTTCCGGGTATATAAATGAGTATCTAAATAAAGCTCCTGTAC
Unaligned ( gi|19 ): CTGTTCGTTATCTTTGCCTTTACATTCCTCAGGAATGACTTGATGG
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111
lowQualScore : 1 1 222 1 22222 44444444444 11 11 1111 1 444444444444 11 4444444 11 111 11 3333333 666666666666666666666666666666666666 11 33333 0000000000000000000000000000000000000000000000000000000 1111 1111 111111111 333333333333333333333333 11 222222 22222222 2222222222 11111111
lowQualScore : 5 1 5 1 111 5 77777 33333333333 1 1 1 0 22 1 1 1 6 88 88 7 6666 7 3 1 2 222222222222 0 11 22 8 2 8 0000000 11 5555 444 0 11 8 0 1 3 0 6666666 8 1 1 99 77 6 1 99 444444444444444444444444444444444444 66 11 88888 77 5 999 8888888888888888888888888888888888888888888888888888888 5 99 7 8 0 22 8888 8 8 3 0 0000 999999999 77 3 555555555555555555555555 77 77 111111 66 0 00000000 0 66 2222222222 66 3 5 5 77777777 22
lowQualScore : . . . . ... . ..... ........... . . . . .. . . . . .. .. . .... . . . . ............ . .. .. . . . ....... .. .... ... . .. . . . . . ....... . . . .. .. . . .. .................................... .. .. ..... .. . ... ....................................................... . .. . . . .. .... . . . . .... ......... .. . ........................ .. .. ...... .. . ........ . .. .......... .. . . . ........ ..
lowQualScore : 5 0 0 0 000 5 00000 00000000000 0 0 0 7 00 0 0 0 7 33 33 3 7777 3 3 2 0 000000000000 8 88 00 0 8 0 2222222 88 4444 000 8 00 0 8 0 8 8 0000000 0 4 0 22 77 7 0 22 777777777777777777777777777777777777 44 88 00000 99 7 666 8888888888888888888888888888888888888888888888888888888 2 77 8 0 8 00 4444 0 0 2 6 0000 888888888 66 7 999999999999999999999999 99 11 000000 11 7 33333333 7 11 8888888888 11 0 7 7 00000000 44
consensus : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCAAA--T-CCTAT-ATATTACCAATTATATCATTGTTGACCAGT-TCCC-AAATTTTGAG-CTCG---CA--TTT-TTCAGCTTTTT---TTT--GAAG-AAATTAATTTATT--TT-AATA-CAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------A-T-TTTAT----ATAACATGAAATCC-TTCTT-CTTTGTTTTTCTTCAATTATTTTTT--AAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTCTTT--CC--GAATAGNNTCATCCAGCA------TTGTT---A--CC--GN-TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
Reference ( family-2196 ) : TACTGGATGCATGGNTCGGTAANATTGCTATCAATTGATGTAGTACATACGTAACGCACTAGATTNATGGTTNGTAAGATTGCTATNAATCGGTGTAGTACATACGTAACGCACTAGATTCATGGTTCGTAAGATTGCTATTAATANNTGTACATGCATGCATAAAGCACNGGATTTGCGAAATCGTAAGATTGTTATNAATANACGTAGATGTACGAGGGTTGTCC--CAAATTT--TCGTGGATTAGGCTTAAACAACTTTTGAAGTATTC-CATGTAATTTCGCAAA--T-CCTAT-GTATTACCAATTATATCATTGTTGACNAGT-TCCC-AAATTTCGAG-CTTG---C---TTT-TTCAGCTTTTT---TTT--GAAG-AAATTAATTTATT--T----TA-CAACAAGGTTGTGCTCGGC--CGCGCAACTTGCGA-CGTCAAANTTTTCTCGC--GGTGTTNTACATGT---------------A-T-TTTAT----ATAACATGAAATCC-TTCTT-CTTTATTTTTCTTCGATTATTTTTT--AAAGTCGAGG-TACCCAA-G-GT-------------GCA----------C----------CTGA---CT--CT-----ATCCGATAGAATGCGT-TGAACAGACGATTT-GCTGATTCCCATAATTTCC-TTC-AAGC-TCTCGTAAGGTTCATNGTCTGTC-TT--CC--GAATAGNNTCATCCAGCA------TTGTT---A--CC--GN-TT--TTG-TCGA-TA---TC-CCTCGACCGGCCTCTCTTTCCTGGC-------GTATTGTTCTCGTAT--CCTTCAGAAAATA-A--------TTTG--TGNCAT-TTGAACA-CCACGGA---GCGAGAAACATTTCC
gi|1 : TACTGAATAC-TGGATCGGTAAGATTG---TCAAT-GATG-----CATATGT-----------TTCATGGTTAGTAAGATTGCTATCAATTGATGTAGTACATACGTAACACACTAGATTCATGGTTCGTAAGATTGCTATTAATATTTGTATATGCATACATAAAGTACAGGATTTGTGAAATCGTAAGATTGTTATAAATAGACGTAGATGTACGAGGGTTGTCC--CAAATTG--TCGTGGATTAGGCTTAAACAATTTTTGAAGTATTC-CATGTCAAGTCACAAAT-T-CCTATAATATTACCAATTATATCATTATTCATCAGT-TCCC-AAATTTTGAGATTTG---TACATTT-TTGAGGTTTTC---TTT--AAAG-AAATAAATTTATC--TTTAATA-CATCAAGGCTGTGCTCGGC--CGGGCAACTTGCAA-CGTCAATTTTTTCTCGC--GGTGTTGTAAATGT---------------A-TATTTAT----ATAGTATGAAGTCC-TTTTT-TTTTATTTTTCTCC-ATTTTTTTTT--AAAGTCGAGG-TACCCAA-G-GT-------------AC-----------C----------CTAA---CC--CT-----ATCCGATATAATGCGT-TAAACTGATGATTT-GCTGATTCCCATAATTT-T-TTC-AAGC-TTTCGTAAGGTTTATAGTTTGTCTTT--CC--GAATAGGTTTATTAAGCG----------T---A--CCAGAA-TT--TTG-TTAA-TA---TT-CTATGACCGACGTGTCATTCTTGGC-------CTATTGTTCTAATAT--CCTTCAGAAAATA-A--------TTGG--TGGTTT-TTGAACA-CCACGGA---GCGAGAAACACT
gi|12 : T----ATAACATTAAAACAATCCTT-CTTTATTTTTCTTCAG--ATTTTTT--GAAGTCGAGA-TAACCAA-G-GT-------------ACA----------CACGTACAGGGCCGATGCCTTCCTAAAAGATTCGATAGAATGCGG-TGAGCAGACGATgtc
gi|14 : GCA------TCTTT---A--CC--GCGTT--TTGGTCAA-TT---TC-TTTCGGCCGATCTCTCTTTCCTTGC-------GTATTGTTCTCATAT--CCTTCTGAAAATA-A--------TTTG--
gi|15 : CATCCAGCA------TTGTT---G--CC--AT-TT--TT--TCGA-AAATTTC-CCTCAACCAGCCTCTCTTGCCTAGC-------ATATTGCTCTCGCAT--CCTTCAGAAAATA-T--------TTTG--TGcatccaatgaac
gi|17 : TTGCCTTTACAT--CATTCAGAAAATA-A--------TTGA--TGGCTT-TTGAACA-CCACAGA---GAGAAAAACACTGCC
gi|18 : tttgttatctTAATACATACATAACGCACTAGAAAAATGGTTCGTAAAATTGCTATT
gi|2 : TACTAGATGCATGGTTCG-TAATATTGCTATTAATTGATGTAGTACATACATAACGCACTAGATTAATGGTTCGTAAGATTGCTATGAATCGGTGTAGCACATATATAATGCACTAGATTCATGGTTCGTAAGATTGCTAATAATAAATGTACATGTATGCATAAAGCACTGAATTTGCGAAATCGTAAGATTGTTATTAATACATGTAGATGTACGAGGGTTGTTC--CAAATTT--TCGTGGATTAAGCTTAAACA--TTTTGAAGTGTTC-CATGTAACTTCACAAA--TACCTAT-ATATTACCAGTTATATCATTGTTGATAAGT-TCCC-AAATTTTGAG-CTCGGTACA--TTT-TTCATTTTATT---TTT--GGAGAAAATTAACTTATT--TTCAATA-CAACAAGGTTCTGCTCGGC--CGCGCAACTTGTAA-CGTCAAATTTTTCTCGC--GGTGCTGTACATGT---------------A-TATTTAT----ATACCATGCAATC----CTT-CTTTGTTTTTCTCCAATTATTTTTT--GAAGTCGATG-TACCCAA-A-GT-------------AC-----------C----------CTTA---CT--CT-----ATCCGATAGAATCCGT-TGAACAGATAATTT-GCTGATTCCCATAATTT-C-TTC-AAGC-TTTCGTAAGGTTTATAGTCTGTCTTT--CC--GAATAGGTTTATTCAGCAC-----TTG-T---A--TCAGAA-TT--TTG-TCGA-TA---TT-CTATGACCGACGTGTCTTTCTTGGC-------CCATTGTTCTC
gi|3 : acatatacaacgTATTACCAATTATACCATTGTTGACCAGCACCCC-AAATTTCAAG-CTTGTA-C---TTCATTCAGCTTTTTATTTTT--GAGA-AAATTAATT-ATT--T----TA-CAATAAGGTTGTGCGTGGC--AACACAACTTGCGA-CATAAAAATTTTCTCCCAGGGTTTTTTACATGTGAGCTGCCTGAGAAAA-T-CCTTC----A-AACATGAAATCC-TCCCT----TGTTTTTCTTCG-----TTTTTGAAAAGCAGAGG-TACCCAGCGTGT-------------GCATATTGAATTTC----------CTGA---AT---T-----ATCTGATAGAACGCGG-TGAACAGA-----T-GCTGATTCCTAAAATTTTC-TTCTAAGC-TCTCATACGGTCCAATGTCTGTC-TTACCC--GAATAGTGTCATCCAGCA------TTGTT---GTGCC--AT-TT--TT--TCGAACA---TTTCCTCGACCAGCCTCTCTTGCCTGGC-------ATATTGTTCTCGCAT--CCTTCAGAAAATATT--------TTTG--TGCCAC-TTGAACA-TCAAGGA---GCAAGAAACATTTCa
gi|4 : TTT--AAAGTCGAGGATATCCAA-G-ATTACATATCCCTATGCATT--------C----------CTAA---AT--C------ATCTGATAAAATGCGTATGAATAGAAGATTTTGCTTATTCCCTTAATTTCTGTCC-ACGCATCTC-TAAAATT-------TGCC-TT--CCTCGAATAGTGTCATACAGGAAAAAATCTGTTTTAA--CC--GG-TT--TT--TCAC-TACTTTG-CCTCGATCGGCG-CTGTTTCCTGGCCACAATGGAATTGTCCCCATATATCCTTCAGAAAAAA-AAAGAAAAACATGGTTGTCATGTTAAACAGCCACAGAAATGCATAAAACATTTTCtgtgcaattctatcaattctaactttttgtgagactcagtttaggtcagtctgtgttccatgctaaaatttatgtctttttggtgtgcatgcagtgtttgacattttggcacctggagcagtatttacataatgtgtcataattatttggatcatgatagaaattttcgggtat
gi|5 : TTGTGCTTGGC--GGCGCACTTTGCGA-CATCAATATTATCTCGC--GATGCGTTACACGT---------------AAC-TTTATGCACATAACAGGAAATCC-TT-------TGATTTTCTT--ATT-TTTTTT--AAAGCCGAGG-TACCAGA-T-GT-------------GCA----------C---------------------------------ATA-----------AATAGACGATTT-GCTA--------AATTCCC---C-AA---TCTTGTACGGTTCGTCGCCTGTC-T----------------------------------TT---A--CC--GT-TTTCTTG-TCGA-TT---TC-CTTCGACGGGCCTCTCTTTCCTGGC-------GTGTTGTCCCTATAT--CCCTCCG-AGATA-A--------TTTG--TGTCAA-GTGAAC----------------GAAACATTTCtgatgcgattttctgtcaaatctcactcattaggattttcagtagggtcactcccaagttccgtaaaaatatcttcttggtgcgcctggttcgacgctaacatccctctttcagctggacaagacgtttatgcaacttccatcttgttaaaacgttatgccataaattcagtttaatatttttcatcatta
gi|6 : CTTGTAT--TCTCCAGAAAATA-A--------TTTG--TGCCAT-TAGAACA-CC-----------AGAAACATTTCagtaagattctctcattattaacttcttgtgagtctctgttggggtcaatccgagtttccatgcaaaatttcatataacccctcggtgcgccgcatttgaatctgacttcgccatttcgctcaacatttgcacctcccaaatgtcgcataatatgttaaa
gi|7 : ATTGTTCGCATAC--CCTTCAGAAAATA--------------------AT-TTGAACA-CCAGAAA---GCGAATAATATATCtgtgcgattttgtcaatttgaacttcgtgcgagtccctgttggggtcaatcagatgtttgtgcacttcttggtgcaccttgtttgacactgacgtagccattttgttggacatttgcaactcctaactgttgcattgttataattcatttaataaatatcatgtcattatgataagttttgtgggtgtgtaaatgagtttctaaacaaaactcctacat
gi|8 : TGTATTTTTGCAAAACT-GTTAT-GTATTACTAATTATATGATTATTGACAAGT-ACTTAAAACTTTGCA-CTTG---C---GT-----AGCTTTTA---T-----AAG-AA---AATTTATTACT----TATCAATAAGGCTGAGCTC-GC--CG--------GCGA-CGTCAAATCTTTTTCGA--GGTATT-------------------------T-TTCAG----GTAACATGAAATCC-TTCTTGCTTTAATTTTCGTCA---ATCTTGT--AA---CGAGT-TACCCAA-A-GT-------------GCA----------C----------tgcaatttgtcaattttaacttcttgtgagtctctgttggagtcaatatgagttccattcaaaatctaatgaattactcgttgtgctgcatttgaagctgatgtcgccattttgctgggcttttatgtcataattcatttaaatattacaccataaagataaaattttccgggtatgtaaatgagtaactaaacaaagctact
gi|9 : CGAGG-CTGTCCAATAAATTTCTTTGTGGAC-AGGATTAAA--ACTC--AAATTATTCGCATGTAATTTCACAG-------------------AATTGTACAATTG-TGACC-----------ATTTTTAG-CTCT---C---TTT-TTT--TTTTTT---TTTGAGAAA-AAATTAA-TTATT--T----TA-CATCAAATTTGTA--CAGCAACGC-CAATTTGTGAGTGTCAAAATTTCCTCGC-----GTTA-----GT-----------------------T----ATAACATGAAATCC-TTCTac
5 sequences could not be aligned to this reference sequence:
Unaligned ( gi|10 ): AACATTTCTGTGAGATTCTGTCAATTTTAATTTTTTATGTTTCTCTCATCGGGTCAATCCGTGCCGTGACTTCTCGGTGTGCCGCGTTTGACGCTGACGTCACTATTGCACCCGCGTTTGACGTTTCACTCGGCATTTGCACCTCCATATACAATCGT
Unaligned ( gi|11 ): CCATTGGAACACCAGGGAATGAAACATTATTGCGCGATTTTTAACTTTTAGTGAGTCTGCTGAGGTCAATCCTTGTTCCGTGCAAAGTTTGTTAATTCTAGGTGCGCCGCGTCTGACGTCGCCATTTA
Unaligned ( gi|13 ): ATTGATTCACTGTTGGGGTCAATCCGAGATGTGACTTCTTGGTGCGCCGTGTTTGACATTGACATTTCACTGGACATTTGCTTTTCCATACTATCGCACGATATGTCATAACGT
Unaligned ( gi|16 ): ATTCATTTATATATTATGCCATACTGATAAAACTTTCCGGGTATATAAATGAGTATCTAAATAAAGCTCCTGTAC
Unaligned ( gi|19 ): CTGTTCGTTATCTTTGCCTTTACATTCCTCAGGAATGACTTGATGG