lowQualScore : 333333333333 1111 11111111 3333 222 1 1 1 111 11 111111111111 22222222222222 222222 1 22222222 11 1 5555555555555555555 111111111111 1111111111111111111 1111 11 222222222222 11 33333333
lowQualScore : 3 111111111111 66 8 99 0000 8 8 4 55555555 4 99999 66 5555 99 8 2 888 5 0 0 0 7 3 000 55 00 6 0 555555555555 1 5555 77 33 99999999999999 2 5 444444 2 77777 3 5 0 33 2 5 5 0 2 5 11111111 4 99 2 7 777777 5 33 2 6666666666666666666 1 222222222222 2 7777777777777777777 4 5 0000 77 2 666 2 888 2 5 3 3 3 6 888888 55 888888888888 888 8 4 4 22 4 9 888 1 11111111 5
lowQualScore : . ............ .. . .. .... . . . ........ . ..... .. .... .. . . ... . . . . . . ... .. .. . . ............ . .... .. .. .............. . . ...... . ..... . . . .. . . . . . . ........ . .. . . ...... . .. . ................... . ............ . ................... . . .... .. . ... . ... . . . . . . ...... .. ............ ... . . . .. . . ... . ........ .
lowQualScore : 2 111111111111 99 9 77 8888 9 9 4 88888888 4 66666 77 0000 11 9 5 888 0 0 0 8 1 6 777 00 11 7 4 888888888888 5 5555 99 99 33333333333333 7 3 222222 9 11111 1 7 3 99 9 7 3 8 5 0 88888888 1 11 7 9 222222 0 44 4 4444444444444444444 6 111111111111 4 6666666666666666666 7 0 6666 22 5 666 5 888 3 7 1 1 1 2 888888 00 999999999999 888 9 4 4 22 0 0 888 4 33333333 7
consensus : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTC-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATT-TT--T-CT-T--TTG-ATA-ATTTTAGNTTG-NTATATTACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAAG-AA--CT--GAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTTTA----T-----A-AAAAGACTAGAGTA--T--AAGCACACT-G--C------N--TAAAA-T-ATT----A-AAA-AA-----CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATG-ATGAAAGGAAC-AA-TAG-TCAGTAGTTTTAGAC-AG-AAATTT------TGT-ATCTA--GTACA-TTTTTCC----C-------GA----TTTTTTTTT-----------A-TTTT------------G------G-GGGTA-ATT--TTC-C-CC--TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTTCCACG---TTAGAGT-AAC-G--CCTTC-GAAAGAA
Reference ( gi|3 ) : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATT-CT--T-CT----TTA-ATA-ATTTTAGGTTG-A-ATAT-ACATTGA-AGTTC-ATAAATCCAAAAGGGCATCATTGTCAATAAAA-AA--CT--GAAAAAGTTGTAGACTTA-TTATTATCTGGCTTTCACAAAATTTTA----T-----A-AAAAGACTAGAGTA--T--AAGCACACT-G--C------T--TAAAA-T-ATT----T-AAA-AA-----CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATG-ATGAAAGGAAC-AT-TAG-TGAGTAGTTTTAAAC-CG-AATTTT------TGT-ATCTA--GTACA-TTTTTCC----C-------AA---TTTTTTTTTT-----------A-TTTT------------G------G-GGGTA-AGT--TTA-C-CT--TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTC-AATAAA-AA-TG-A--AAATGAACT-ACTTTACACA---TCAGAGT-AAT-G--CCTTT-GAAAGAA
gi|2 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCT--T-CTCT--TTG-ATATATCTTTAGTTG-A-ATATTACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAAA-A---CT--GAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCAC-AAATTTTA----T-------AAAAGACTAGAGTATTT--AAGCACACTCG--CA-----T--TAAAT-TGATT----TAAAA-AA-----CAAA-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA-G-ATTGAAAGAAC-A---AA-T-AGTAGTTTTAGACATG-AATTTT------TGTCAT-TA---TACA-TTTTTCCA---CAA-----AA---ATTTTGTTTT-----------A-TTTT------------T------G-GGGTAGAGTA-TTAGC-CT--TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTTACACA---TCATGTT---T-GCTCTTTT-GAAAGA
gi|1 : gGTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCT--T-CTCT--TTG-ATATATCTTTAGTTG-A-ATATTACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAAA-A---CT--GAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCAC-AAATTTTA----T-------AAAAGACTAGAGTATTT--AAGCACACTCG--CA-----T--TAAAT-TGATT----TAAAA-AA-----CAAA-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA-G-ATTGAAAGAAC-A---AA-T-AGTAGTTTTAGACATG-AATTTT------TGTCAT-TA---TACA-TTTTTCCA---CAA-----AA---ATTTTGTTTT-----------A-TTTT------------T------G-GGGTAGAGTA-TTAGC-CT--TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTTACACA---TCATGTT---T-GCTCTTTT-GAAAGAg
gi|6 : gGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTTAT-GTA-A-ATTTT-CA-AA-TA---C---GTTG-GAATCATT-TT--T-TTGTTGTTG-ATA-ATTTTAGTTTGTATATAT-ACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTATCAATAAAG-AA--CT--GAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTTTA----G-----G-AAA---------TA--T-----CA-------------------AAAA-C-AT------------------------TCAAAA-CATAAATTTT--T-AT-TTGCAAAATG-ATGAAAGGAACAATATAA-TCAGTAGTTTTAGAC-AA-AAAGTT------TGT-ATCTA--GTACA-TTTTTCC----CGAAAAA-AA----------TTG-----------A-TTTG------------G------G-GAGTA-ATT--TTC-C-CC--TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTGTAC------TTT--g
gi|11 : tggGTGGTTTCAAAAA-TA-AA------GAGACACA--CATT-TGACATTTTT-GTA-A-ATTTT-CA-AA-TACATGTACGCTG-AAATTATT-TA--T--T----TTG-ATA-ATTGTAGTTTG-C--TGT-ACATTGA-AGTTC-AAAAATCCAAAAGAGCATTATTGTCAATAAAG-AA--CT--GAAAAAGTTGTAGACTTT-TTGTTATCTGATCTTCACAAAATTTTA----T-----A-AAA-----AGAGTA--T--AAACACAAT-G--C------A--TAAAA-T-ATT----A-AAA-AA-----CAAA-TTCAAAA-CATAA--TTT--T-AT-TTGC-AAATC-ATGAAAGGAAC-AA-TAA-TCAGTGGTATTGA
gi|10 : gGTGGTTTCAAACA-TA-AT------GAGGCACA--AAC------ATTTTT-GTC-A-ATTTT-CA-AA-TA---G---TTTG-AAATTA-T-CTGGT-TT----TCACAAA-ATTTTAcaaa
gi|7 : tatttcatgcaaatgaaaagtggaagagacgtaaatggGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTAT--GT--A-ATTTT-CA-AAATA---C---GTTG-GAATCATT-TT--T-TTGTTGTTG-ATA-ATTTTAGTTTGTATATAT-ACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTAT-AATAAAG-A---CT--GAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTTTA----G-----G-AAA---------TA--T-----CA-------------------AAAA-C-AT------------------------TCAAAA-T---AATTTT--T-AT-TTGCAAAATG-ATGAAAGGAACAATATAA-TCAGTAGTTTTAGAC-AA-AAAGTT------TGT-ATCTA--GTAAA-TTTTTCCGAAAA-------AA-----------TT-----------G-ATTT------------G------G-GAGTA-ATT--TT--C-CC--TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTG-AC------TTT--T-----A------AAAAAtataaaaaaaagcccactgtataaaatattaaaaaacaaattcaaaacatgattttttcattacaaatgatgaaaggaaaaatagtaagtagttttagacagaaaatctagtacatttttcccaattttttttacttttggggtaaatttccccttatctttagtgatgggggttcagaaagtttttgtagttttttttaaagaaatattaataaaaatgaaaatgaacta
gi|23 : gGTGGTTTAAAAAA-------------AGGCACA--AACT-GA---TTTTT-GTC-CCATTTT-TA-AA-TA---A---GTTA-AAATCATT-TT--T-
gi|4 : ggTCAAAAA-TA-AT------GAGGC-CAGCAACT-GAAATTTTTTTGTC-A-ATTTT-CA-AA-TA---G----TTGTAAATCATT-TT--TTCT----TTG-ATA-ATTTTAGGTTG-T-ATATTACATTGA-AGTTC-ATAAATCCAAAAGGGCATTACTGTCAATTAAG-AG--CTCTGAAAAAGTTGTAGACTTA-TAATTATTTGGTTTTCACAAAATTTCA----T-----A-AAAAGACTAGAGTA--TCTAAGCAAACT-G--C------CA-TAAAA-T-ATT------AAA-AA-----CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATGGATGAAAGGAAC-AA-TAG-TCAGTAGTTTTAGAC-AG-AAATTT------TGT-ATCTA--GTACA-TTTTTCC----C-------AA---AAATATTTTG-----------A-TATT------------C------G-GGGTA-ATT--TTC-CTCC--TTA-TTTT---T-GTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------T
gi|16 : ACT-GAAAATTTT--GTC-C-ATTTT-CA-AA-TA---C---ATCG-AAGTCATT-TT--T-CT----TTG-GTA-ATTTTAAGTTG-TTATAT-ACATTAA-AGTTC-ATAAATCCAAAAGGG-A--ATTG----------AA--CT--GAAAATGTTGTAATTTTA-TT
gi|5 : -ATTTTAGTTTG-T-ATAT-ATATTGA-AGTTC-ATCAATCCAAAAGGGCGTTATTGTCAATAAAA-AAAACT--TACAAAGATGTAGATTTA-TTATTATCTGGTTTTCACAGGGTTTTT----TTTTTTA-AAAAGACTACAGTG--T--AAGCACACT-G--CGTAAAATCATAAAA-T-ATT----A-AAA-GA-----CAAA-TTCAAAG-CACATTTTTT--T-CT-TTGC-AAATG-ATGAAAGGAAC-AA-TGA-TCAGTAGTTTTAGAC-AG-AAATGT------TGT-ATCTA--GTACA-TTTTACC----CGAAACAAAA----------TTG-----------A-TTTTGGGATGGGGGGGG------G-GGGTA-ATT--TTC-C-CC--TTA-CTCT---TGGTACTG-AGG-GTTCAA-TAA---TTTATGTAG------TTT--T-----A------AAAAATGTT--ATAAA-AAGTG-A--AAATGAACT-ACTTTCCACA---
gi|8 : CCAAAAGGGCATCATTGTCAATAAAA-AA--CT--GAAAAAGTTGTAGACTTA-TTATTATATGGTTTTCACAAAATTTTA----T-----A-AAAAGACTACAGTA--T--AAGCACACT-G--C------T--TAAAA-T-ATT----A-AAA-AAAAAAACAAA-TTCAAAA-CATGATTTTT--TTCT-TTGC-AAATG-ATAAAAGGAAC-AA-TAG-TCATTAGTTTTAGAC-AT-AAATTT------TGT-ATCTA--TTACA-TTTTTTC----C-------GA---TTTTTTTTTT-----------A-TTTT------------G------GAGGGTA-CTT--TTA-C-CC--TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTTCCACA---TTAGAGT-AAC-A--CCTTC-GAAAGAA
gi|18 : AAAAGCGTTATTGTCAATAAAAGAA--AT--GAAAAAGTTGTAGACTTT-TTATTATCAGATTTTCACCAAATTTTA----T-----A-AAAAGACTTGAGTT--T--AAACACACT-T--C------A--TAAAA-T-GTT----A-AAA-AA-----
gi|22 : TGTCAATAAAG-AA--CT--GAAAAAGTTGTAGACGTT-TTATTATCTGATTTTAACAAAATTTTA----T-----T-AAAAGACTTAAGTA--T--AAACACACT-G--C------A--TAAAA-T-GT
gi|10 : ATTATCTGGTTTTCACAAAATTTTA----T-----ATAAAAAA-------------AAGCCCACT-G--T------A--TAAAA-T-ATT----A-AAA-AA-----CAAA-TTCAAAA-CATGATTTTT--T-CA-TTAC-AAATG-ATGAAAGGAAA-AA-TAG-TAAGTAGTTTTAGAC-AG-AA------------A-ATCTA--GTACA-TTTTTCC----C-------AA-----TTTTTTTT-----------A-CTTT------------T------G-GGGTA-AAT--TTC-C-CC--TTA-TCTT---TAGTGATG-GGG-GTTC-A-GAAAG-TTTTTGTAG------TTT--TTTTTAA------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-Aa
gi|9 : tatttcatgcaaatgaaaagtggaagagacgtaaatgggtggtttcaaacataatgaggcacaaacatttttgtcaattttcaaatagtttgaaATTATCTGGTTTTAACAAAATTTTAAGTAT-----A-AGAAAA-------A--A--AAGCACACT-GGGC------A--TAAAAAT-ATT----A-AAA-AA-----CAAAGTTCACCA-CATGATTTTTAGT-CA-TTAC-AAATG-ATGAAAGGAAA-AT-CAGACAAG-------AAA-----AA--------------ATCTA--GT-CA-TTTTTCC----C-------AA---TTTTTTTTTTTTTTTTTTTTTACTTTT------------G------G-GGGTA-AAT--TT--C-CTCGCTACTTTT---TAGTGATG-GGGCGTTC-A-GAAAGTTTTTTGTAG------TTT--T-----CTTTTTTAAGAATATTAAATAAA-AA-TGAA--AAATGAACTAACTTTCCCCACGTTTGAAGT-AAC----CCTTCGGAAAGAA
gi|13 : caaacatttttgtcaattcaaagtagttttgaaGGGTTTCACAACATTTTA----T-----G-AATAGACTAGAGTA--T--AAACACACT-A--C------C--TAAAT-T-ATTAAAAT-AAACAA-----TAAA---CAAAA-CAgacaa
gi|26 : -AAAAGACTAGAGTA--T--AAGCACACT-G--C------A--TAAAA-T-ATT----aaaacaaaaaacaaacaaaaccaaatttaaaatatgtatttttctatgcaaagaataattgataattttagacggcaatttttgtacatgtatcaagtaattttcccccaaaatatttgatttttgaggtaatcttccccttattatttgtg
gi|20 : A-T-ATT----A-AAA-AA-----CAAA-TTCAAAA-CATGAATTC----------GC-AAATG-ATGAAAGGAAC-AA-AAG-CCAGTAGTTTTAGAC-AA-AA-TTT------TGT-ATCTA--GTACA-TTTTCCC----C-------GA---
gi|13 : -AAA-AC-----CAAA-TTTAAAA-TATGTATTTT--T-CT-ATGC-AAA----------GAAT-A---AT-TGA-TAATTTTAGAC-GGCAATTTTTGTACATGT-ATCAA--GTA-A-TTTTCCC----CCAA----AA-------TATTTG-----------A-TTTT------------T------G-AGGTA-ATC--TTC-C-CC--TTA-TTAT---TTGTG
gi|15 : gggtttcacaacattttatgaatagactagagtataaacacactacctaaattattaaaataaacaataaacaaaacaaaaacaaaaaacaaac-CATGAATTTT--T-CT-TTGC-AATTG-ATGAAAGAAAC-AA-TAG-TTAGTAATTTTAGAC-AG-AA-ATT------TGT-ATCTA--GTACA-TTTTCCC----CTGA----AA-----CATTTTTT-----------A-TTCG------------G------G-AGGTA-ATT--TTC-C-TC--TTA-TTTT---TGGTGATG-
gi|21 : TTTT--T-CT-TTGC-AAATG-ATGAAAGGAAC-TA-TAG-TCAGTACTTTTAGAC-AG-AAATTG------TGT-ACCTA--GTACATTTTTTTC----C-------GA---AATTGTTTTG-----------A---TT------------G------G-GGG
gi|12 : -AAATA-TTGATAGGAAC-AA-TAA-TCAGTAGTTTCAGAG-AG-AAATTT------TAT-ATCTA--GTACA-TTTTTCC----A-------GA---AATTTTTTTG-----------A-TTTT------------G------G-AGGTA-ATT--TTT-C-CC--TTA-CTTT---TGATGATG-AGG-GTTC-A-TTAAG-TTTTTGTAG------TTTTAT-----A------AAAAGTGCT---TAAA-AA-TG-A--AATCAAACT-ACTATCCACG---TTAGAGT-AAC-G--CCTTT-AAAgg
gi|14 : aagctcaccctacaacatccttaagcacactgcata-ATGAAAGGTTC-AA-TAA-TCAGTAGTTTTAGAC-AG-AAATTA------TGT-ATCTA--GTACA-TTTTTCC----AGAAA---AA---TTTTTG---------------A-GTTT------------G------G-GGATA-ATTAATTC-C-CC--TTA-CTTT---TGGTGATG-AGG-GTTC-AATTAAG-TTTTTGTAG------CTT--T-----A------AAAAATGTT-ATCAAA-AA-TG-A--AAATTAACT-ACTTTCCATG---ATAGAATAAATAG--CCTTC-AAAAGAA
gi|19 : atttcgcaggggtTT------TGT-ATCTATAGTACA-TTTTTTC----C-------GAATGTTTTTTTTTT-----------A-TTTT------------G------GAGGGTA-ATT--TTA-C-AC--TTA-TTTA---TGGTGATA-AGG-GTTC-A-TAAAG-TTTTTGTAG------
gi|17 : CA-TTTTTTT----T------------TTTTTTTTTT-----------A-CTTT------------T------G-GGGTA-AAT--TTC-T-CC--TTA-TTTT---TAGTGATG-GGG-GTTC-A-GAAAGTTTTTTGTAGTTTTTCTTT--T-----A------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-
gi|24 : cT-----------A-TTTT------------GATATCCG-GGGTA-ATT--TTC-C-CC--TTA-TTTT---TGGTGAT
gi|25 : aaaaGAACT-ACTTTCCACG---TTAGAGT-AAC-A--CCTTC-AAAAGAA
Alignments
lowQualScore : 222222 11 1111111 2222222 22 111 11 44444444444444444444444444444444444444444 1111111111111111111 222222222222 11
lowQualScore : 1 8 8 555555 66 8 33 8 4 8 8 4 3333333 4 1111111 8 4 8 8 9 55 555 8 8 0 55 44 44 77 6666 77777 2 7 2222 00 88 55 2 88888888 66 55 33 66666 2 2 5 8 33 2 5 5 22 66 1 2 4 3 7777777 4 33 2 4 66666666666666666666666666666666666666666 2 2 6666666666666666666 4 66 4 33 1 2 2 2 888 1 5 2 2 2 5 888888 44 555555555555 44 8 4 4 11 3 66 5 8888 5
lowQualScore : . . . ...... .. . .. . . . . . ....... . ....... . . . . . .. ... . . . .. .. .. .. .... ..... . . .... .. .. .. . ........ .. .. .. ..... . . . . .. . . . .. .. . . . . ....... . .. . . ......................................... . . ................... . .. . .. . . . . ... . . . . . . ...... .. ............ .. . . . .. . .. . .... .
lowQualScore : 9 9 9 666666 11 0 66 0 0 0 0 0 1111111 0 2222222 9 4 0 0 7 77 333 9 9 2 77 66 66 77 1111 11111 7 3 6666 33 44 22 5 55555555 55 22 77 77777 9 9 3 9 77 7 3 0 77 55 2 4 7 2 6666666 7 22 2 4 66666666666666666666666666666666666666666 2 2 1111111111111111111 4 55 7 22 2 4 4 4 222 6 3 9 9 9 7 222222 66 555555555555 88 0 0 0 00 6 11 0 5555 0
consensus : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTG-TATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GCA-T-AAA--------AT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
Reference ( family-2195 ) : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTC-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGNTTGNTATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GCN-T-AAA--------AT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
gi|1 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAG-TTGA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CT--GAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTATTTAAGCACACTC-GCA-T-TAA--------ATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|10 : gGTGGTTTCAAACA-TA-AT------GAGGCACA--AAC------ATTTTT-GTC-A-ATTTT-CA-AA-TA---G---TTTG-AAATTATCT-GGTT--T-TCACAAA-AT-TTTAg
gi|10 : tatttcatgcaaatgaaaagtggaagagacgtaaatggATTATCTGGTTTTCACAAAATTT----TAT-----ATAAAAAA-----------AAGCCCACT--GTA-T-AAA--------AT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGATTTTT--T-CA-TTAC-AAAT-GATGAAAGGAAAA--ATAGTAAGTAGTTTTAGAC-A-GAAA--------------ATCTA--GTACA-TTTTTCC-C---AA------TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCC-CC-TTA-TCTT---TAGTGATG-GGG-GTTC-A-GAAAG-TTTTTGTAG------TTT--TTTTTAA------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-Atataaaaaaaagcccactgtataaaatattaaaaaacaaattcaaaacatgattttttcattacaaatgatgaaaggaaaaatagtaagtagttttagacagaaaatctagtacatttttcccaattttttttacttttggggtaaatttccccttatctttagtgatgggggttcagaaagtttttgtagttttttttaaagaaatattaataaaaatgaaaatgaacta
gi|11 : tatttcatgcaaatgaaaagtggaagagacgtaaatgggtggtttcaaacataatgaggcacaaacatttttgtcaattttcaaatagtttgaaGTGGTTTCAAAAA-TA-AA------GAGACACA--CATT-TGACATTTTT-GTA-A-ATTTT-CA-AA-TACATGTACGCTG-AAATTATTT---AT--T-TTG-ATA-AT-TGTAGTTTGCTGTA----CATTGA-AGTTC-AAAAATCCAAAAGAGCATTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTT-TTGTTATCTGATCTTCACAAAATTT----TAT-----A-AAA-----AGAGTAT--AAACACAAT--GCA-T-AAA--------AT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATAA--TTT--T-AT-TTGC-AAAT-CATGAAAGGAACA--ATAATCAGTGGTATT-GAC-A-AA
gi|12 : gT--AAGCACACT--GCA-T-AAA--------AT--ATT-GA
gi|12 : aagctcaccctacaacatcct-AAAT-ATTGATAGGAACA--ATAATCAGTAGTTTCAGAG-A-GAAATTT-------TAT-ATCTA--GTACA-TTTTTCC-A---GA----AATTT------------TT-------T-----TG-A-TTTT------------G------G-AGGT--AAT-T--TTTC-CC-TTA-CTTT---TGATGATG-AGG-GTTC-A-TTAAG-TTTTTGTAG------TTTTAT-----A------AAAAGTGCT---TAAA-AA-TG-A--AATCAAACT-ACTAT--CCACGTTAG-AGTAA--CGCCTTT-AAAtaggaacaataatcagtagtttcagagagaaattttatatctagtacatttttccagaaatttttttgattttggaggtaatttttcccttacttttgatgatgagggttcattaagtttttgtagttttataaaaagtgcttaaaaatgaaatcaaactactatccacgttagagtaacgcctttaaa
gi|13 : aagctcaccctacaacatccttaagcacactgcataGGGTTTCACAACATTT----TAT-----G-AATAGACTAGAGTAT--AAACACACT--ACC-T-AAA--------TT--ATT-AAAATAAA-----CAATA-AACAAAA-CA
gi|13 : AA--AAC-----CAA-A-TTTAAAA-TATGTATTTT--T-CT-ATGC-AAA----------GAATA--ATTG---ATAATTTTAGAC-G-GCAATTTTTGTACATGT-ATCAA--GTA-A-TTTTCCC-C---CA----A-AAT------------AT-------T-----TG-A-TTTT------------T------G-AGGT--AAT-C--TTCC-CC-TTA-TTAT---TTGTGaaaacaaaaaacaaacaaaaccaaatttaaaatatgtatttttctatgcaaagaataattgataattttagacggcaatttttgtacatgtatcaagtaattttcccccaaaatatttgatttttgaggtaatcttccccttattatttgtg
gi|14 : gggtttcacaacattttatgaatagactagagtataaacacactacctaaattattaaaataaacaataaacaaaacaaaaacaaaaaacaaacATGAAAGGTTCA--ATAATCAGTAGTTTTAGAC-A-GAAATTA-------TGT-ATCTA--GTACA-TTTTTCC-A---GAAAAAT-TTT------------TG----------------A-GTTT------------G------G-GGAT--AAT-TAATTCC-CC-TTA-CTTT---TGGTGATG-AGG-GTTC-AATTAAG-TTTTTGTAG------CTT--T-----A------AAAAATGTT-ATCAAA-AA-TG-A--AAATTAACT-ACTTT--CCATGATAG-AATAAATAGCCTTC-AAAAGAA
gi|15 : atttcgcaggggt-CATGAATTTT--T-CT-TTGC-AATT-GATGAAAGAAACA--ATAGTTAGTAATTTTAGAC-A-GAAA-TT-------TGT-ATCTA--GTACA-TTTTCCC-CTG-AA----A-CAT------------TT-------T-----TT-A-TTCG------------G------G-AGGT--AAT-T--TTCC-TC-TTA-TTTT---TGGTGATG-
gi|16 : ACT-GAAAATTTT--GTC-C-ATTTT-CA-AA-TA---C---ATCG-AAGTCATTT-TTC---T-TTG-GTA-AT-TTTAAGTTGTTATA--TACATTAA-AGTTC-ATAAATCCAAAAGGGAATT-------------GAA--CT--GAAAATGTTGTAA---TT-TTATT
gi|17 : CA-TTTTTTT-T---T-----T-TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCT-CC-TTA-TTTT---TAGTGATG-GGG-GTTC-A-GAAAGTTTTTTGTAGTTTTTCTTT--T-----A------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-
gi|18 : cAAAAGCGTTATTGTCAATAAAAGAA--AT--GAAAAAGTTGTAGACTTT-TTATTATCAGATTTTCACCAAATTT----TAT-----A-AAAAGACTTGAGTTT--AAACACACT--TCA-T-AAA--------AT--GTT-AAA--AAA-----
gi|19 : TT-------TGT-ATCTATAGTACA-TTTTTTC-C---GAATGTT-TTT------------TT-------T-----TT-A-TTTT------------G------GAGGGT--AAT-T--TTAC-AC-TTA-TTTA---TGGTGATA-AGG-GTTC-A-TAAAG-TTTTTGTAG------
gi|2 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAG-TTGA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CT--GAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTATTTAAGCACACTC-GCA-T-TAA--------ATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|20 : g--------AT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTC----------GC-AAAT-GATGAAAGGAACA--AAAGCCAGTAGTTTTAGAC-A--AAATTT-------TGT-ATCTA--GTACA-TTTTCCC-C---GA----g
gi|21 : TTTT--T-CT-TTGC-AAAT-GATGAAAGGAACT--ATAGTCAGTACTTTTAGAC-A-GAAATTG-------TGT-ACCTA--GTACATTTTTTTC-C---GA----A-ATT------------GT-------T-----TT-G-ATTG------------G------G-GGG
gi|22 : TGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACGTT-TTATTATCTGATTTTAACAAAATTT----TAT-----T-AAAAGACTTAAGTAT--AAACACACT--GCA-T-AAA--------AT--GTg
gi|23 : GTGGTTTAAAAAA-------------AGGCACA--AACT-GA---TTTTT-GTC-CCATTTT-TA-AA-TA---A---GTTA-AAATCATTT-TTa
gi|24 : ggT-A-TTTT------------GATATCCG-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGAT
gi|25 : aaaaGAACT-ACTTT--CCACGTTAG-AGTAA--CACCTTC-AAAAGAA
gi|26 : -AAAAGACTAGAGTAT--AAGCACACT--GCA-T-AAA--------AT--ATT-
gi|3 : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTC-TTCT--T-T-A-ATA-AT-TTTAGGTTGA-ATAT--ACATTGA-AGTTC-ATAAATCCAAAAGGGCATCATTGTCAATAAA-AAA--CT--GAAAAAGTTGTAGACTTA-TTATTATCTGGCTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GCT-T-AAA--------AT--ATT-TAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--TTAGTGAGTAGTTTTAAAC-C-GAATTTT-------TGT-ATCTA--GTACA-TTTTTCC-C---AAT---T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAG-T--TTAC-CT-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTC-AATAAA-AA-TG-A--AAATGAACT-ACTTT--ACACATCAG-AGTAA--TGCCTTT-GAAAGAA
gi|4 : TCAAAAA-TA-AT------GAGGC-CAGCAACT-GAAATTTTTTTGTC-A-ATTTT-CA-AA-TA---G----TTGTAAATCATTT-TTTC--T-TTG-ATA-AT-TTTAGGTTG-TATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCATTACTGTCAATTAA-GAG--CTCTGAAAAAGTTGTAGACTTA-TAATTATTTGGTTTTCACAAAATTT----CAT-----A-AAAAGACTAGAGTATCTAAGCAAACT--GCCAT-AAA--------AT--ATT--AA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATGGATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-CAAAAA----T-ATT------------TT-------G-----AT-A-TTC--------------------G-GGGT--AAT-T--TTCCTCC-TTA-TTTT---T-GTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------T
gi|5 : -AT-TTTAGTTTG-TATAT--ATATTGA-AGTTC-ATCAATCCAAAAGGGCGTTATTGTCAATAAA-AAAAACT--TACAAAGATGTAGATTTA-TTATTATCTGGTTTTCACAGGGTTT----TTTTTTTTA-AAAAGACTACAGTGT--AAGCACACT--GCG-T-AAAATCATAAAAT--ATT-AAA--AGA-----CAA-A-TTCAAAG-CACATTTTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATGATCAGTAGTTTTAGAC-A-GAAATGT-------TGT-ATCTA--GTACA-TTTTACC-C---GA-----------------------AACAAAAT-----TG-A-TTTTGGGATGGGGGGGG------G-GGGT--AAT-T--TTCC-CC-TTA-CTCT---TGGTACTG-AGG-GTTCAA-TAA---TTTATGTAG------TTT--T-----A------AAAAATGTT--ATAAA-AAGTG-A--AAATGAACT-ACTTT--CCAC
gi|6 : GTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTTAT-GTA-A-ATTTT-CA-AA-TA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTG-TATATATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTATCAATAAA-GAA--CT--GAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TAT-----CA------------AAA--------AC--AT----------------------TCAAAA-CATAAATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA-----------------------AAAAAA-T-----TG-A-TTTG------------G------G-GAGT--AAT-T--TTCC-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTGTAC------TTT--a
gi|7 : tggGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTAT--GT--A-ATTTT-CA-AAATA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTG-TATATATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTAT-AATAAA-GA---CT--GAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TAT-----CA------------AAA--------AC--AT----------------------TCAAAA-T---AATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTAAA-TTTTT-C-C---GA-------------------------------AAAAATT-G-ATTT------------G------G-GAGT--AAT-T--TT-C-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTG-AC------TTT--T-----A------AAAAA
gi|8 : gCCAAAAGGGCATCATTGTCAATAAA-AAA--CT--GAAAAAGTTGTAGACTTA-TTATTATATGGTTTTCACAAAATTT----TAT-----A-AAAAGACTACAGTAT--AAGCACACT--GCT-T-AAA--------AT--ATT-AAA--AAAAAAAACAA-A-TTCAAAA-CATGATTTTT--TTCT-TTGC-AAAT-GATAAAAGGAACA--ATAGTCATTAGTTTTAGAC-A-TAAATTT-------TGT-ATCTA--TTACA-TTTTTTC-C---GA----T-TTT------------TT-------T-----TTTA-TTTT------------G------GAGGGT--ACT-T--TTAC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACATTAG-AGTAA--CACCTTC-GAAAGAA
gi|9 : ATTATCTGGTTTTAACAAAATTTTAAGTAT-----A-AGAAAA-------AA--AAGCACACTGGGCA-TAAAA--------AT--ATT-AAA--AAA-----CAA-AGTTCACCA-CATGATTTTTAGT-CA-TTAC-AAAT-GATGAAAGGAA------AATC---------AGACAA-GAAA-----------AA-ATCTA--GT-CA-TTTTTCC-C---AA----T-TTTTTTTTTTTTTTTTT-------T-----TT-ACTTTT------------G------G-GGGT--AAA-T--TTCC-TCGCTACTTTT---TAGTGATG-GGGCGTTC-A-GAAAGTTTTTTGTAG------TTT--T-----CTTTTTTAAGAATATTAAATAAA-AA-TGAA--AAATGAACTAACTTTCCCCACGTTTGAAGTAA--C-CCTTCGGAAAGAA
Alignments
lowQualScore : 222222 1111111 22 22 44444444444444444444444444444444444444444 1111111111111111111 222222222222 11
lowQualScore : 1 8 8 555555 66 8 77 8 4 8 8 4 8888888 4 8 11 8 3 4 8 8 1 55 11 8 8 0 0 55 99 77 6666 77777 2 7 2222 33 66 9999999999999 2 66 55 33 66666 2 2 5 8 33 2 5 5 22 66 1 2 4 3 7777777 4 33 2 4 66666666666666666666666666666666666666666 2 2 6666666666666666666 4 66 4 33 1 2 2 2 888 1 5 2 2 2 5 888888 44 555555555555 44 8 4 4 11 3 66 5 8888 5
lowQualScore : . . . ...... .. . .. . . . . . ....... . . .. . . . . . . .. .. . . . . .. .. .. .... ..... . . .... .. .. ............. . .. .. .. ..... . . . . .. . . . .. .. . . . . ....... . .. . . ......................................... . . ................... . .. . .. . . . . ... . . . . . . ...... .. ............ .. . . . .. . .. . .... .
lowQualScore : 9 9 9 666666 11 0 88 0 0 0 0 0 1111111 0 0 11 9 6 4 0 0 9 88 77 9 9 5 2 77 22 77 1111 11111 7 3 6666 44 99 8888888888888 5 55 22 77 77777 9 9 3 9 77 7 3 0 77 55 2 4 7 2 6666666 7 22 2 4 66666666666666666666666666666666666666666 2 2 1111111111111111111 4 55 7 22 2 4 4 4 222 6 3 9 9 9 7 222222 66 555555555555 88 0 0 0 00 6 11 0 5555 0
consensus : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
Reference ( family-2195 ) : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
gi|1 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTT-CGTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CTGAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTA--TTTAAGCACACTC-G-C--------AT-TAAATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|10 : gGTGGTTTCAAACA-TA-AT------GAGGCACA--AAC------ATTTT-TGTC-A-ATTTT-CA-AA-TA---G---TTTG-AAATTATCT-GGTT--T-TCACAAA-AT-TTTAg
gi|10 : tatttcatgcaaatgaaaagtggaagagacgtaaatggATTATCTGGTTTTCACAAAATTT----TAT-----ATAAAAAA-------------AAGCCCACT--G-T--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGATTTTT--T-CA-TTAC-AAAT-GATGAAAGGAAAA--ATAGTAAGTAGTTTTAGAC-A-GAAA--------------ATCTA--GTACA-TTTTTCC-C---AA------TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCC-CC-TTA-TCTT---TAGTGATG-GGG-GTTC-A-GAAAG-TTTTTGTAG------TTT--TTTTTAA------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-Atataaaaaaaagcccactgtataaaatattaaaaaacaaattcaaaacatgattttttcattacaaatgatgaaaggaaaaatagtaagtagttttagacagaaaatctagtacatttttcccaattttttttacttttggggtaaatttccccttatctttagtgatgggggttcagaaagtttttgtagttttttttaaagaaatattaataaaaatgaaaatgaacta
gi|11 : tatttcatgcaaatgaaaagtggaagagacgtaaatgggtggtttcaaacataatgaggcacaaacatttttgtcaattttcaaatagtttgaaGTGGTTTCAAAAA-TA-AA------GAGACACA--CATT-TGACATTTT-TGTA-A-ATTTT-CA-AA-TACATGTACGCTG-AAATTATTT---AT--T-TTG-ATA-AT-TGTAGTTTGC--TGT--ACATTGA-AGTTC-AAAAATCCAAAAGAGCATTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTT-TTGTTATCTGATCTTCACAAAATTT----TAT-----A-AAA-----AGAGTA--T--AAACACAAT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATAA--TTT--T-AT-TTGC-AAAT-CATGAAAGGAACA--ATAATCAGTGGTATT-GAC-A-AA
gi|12 : g--T--AAGCACACT--G-C--------AT-AAAAT--ATT-GA
gi|12 : aagctcaccctacaacatcct-AAAT-ATTGATAGGAACA--ATAATCAGTAGTTTCAGAG-A-GAAATTT-------TAT-ATCTA--GTACA-TTTTTCC-A---GA----AATTT------------TT-------T-----TG-A-TTTT------------G------G-AGGT--AAT-T--TTTC-CC-TTA-CTTT---TGATGATG-AGG-GTTC-A-TTAAG-TTTTTGTAG------TTTTAT-----A------AAAAGTGCT---TAAA-AA-TG-A--AATCAAACT-ACTAT--CCACGTTAG-AGTAA--CGCCTTT-AAAtaggaacaataatcagtagtttcagagagaaattttatatctagtacatttttccagaaatttttttgattttggaggtaatttttcccttacttttgatgatgagggttcattaagtttttgtagttttataaaaagtgcttaaaaatgaaatcaaactactatccacgttagagtaacgcctttaaa
gi|13 : aagctcaccctacaacatccttaagcacactgcataGGGTTTCACAACATTT----TAT-----G-AATAGACTAGAGTA--T--AAACACACT--A-C--------CT-AAATT--ATT-AAAATAAA-----CAATA-AACAAAA-CA
gi|13 : AA--AAC-----CAA-A-TTTAAAA-TATGTATTTT--T-CT-ATGC-AAA----------GAATA--ATTG---ATAATTTTAGAC-G-GCAATTTTTGTACATGT-ATCAA--GTA-A-TTTTCCC-C---CA----A-AAT------------AT-------T-----TG-A-TTTT------------T------G-AGGT--AAT-C--TTCC-CC-TTA-TTAT---TTGTGaaaacaaaaaacaaacaaaaccaaatttaaaatatgtatttttctatgcaaagaataattgataattttagacggcaatttttgtacatgtatcaagtaattttcccccaaaatatttgatttttgaggtaatcttccccttattatttgtg
gi|14 : gggtttcacaacattttatgaatagactagagtataaacacactacctaaattattaaaataaacaataaacaaaacaaaaacaaaaaacaaacATGAAAGGTTCA--ATAATCAGTAGTTTTAGAC-A-GAAATTA-------TGT-ATCTA--GTACA-TTTTTCC-A---GAAAAAT-TTT------------TG----------------A-GTTT------------G------G-GGAT--AAT-TAATTCC-CC-TTA-CTTT---TGGTGATG-AGG-GTTC-AATTAAG-TTTTTGTAG------CTT--T-----A------AAAAATGTT-ATCAAA-AA-TG-A--AAATTAACT-ACTTT--CCATGATAG-AATAAATAGCCTTC-AAAAGAA
gi|15 : atttcgcaggggt-CATGAATTTT--T-CT-TTGC-AATT-GATGAAAGAAACA--ATAGTTAGTAATTTTAGAC-A-GAAA-TT-------TGT-ATCTA--GTACA-TTTTCCC-CTG-AA----A-CAT------------TT-------T-----TT-A-TTCG------------G------G-AGGT--AAT-T--TTCC-TC-TTA-TTTT---TGGTGATG-
gi|16 : ACT-GAAAATTTT--GTC-C-ATTTT-CA-AA-TA---C---ATCG-AAGTCATTT-TTCT--T-T-G-GTA-AT-TTTAAGTTGTTATAT--ACATTAA-AGTTC-ATAAATCCAAAAGGGAATT-------------GAA--CTGAAAATGTTGTAA---TT-TTATT
gi|17 : CA-TTTTTTT-T---T-----T-TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCT-CC-TTA-TTTT---TAGTGATG-GGG-GTTC-A-GAAAGTTTTTTGTAGTTTTTCTTT--T-----A------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-
gi|18 : cAAAAGCGTTATTGTCAATAAAAGAA--ATGAAAAAGTTGTAGACTTT-TTATTATCAGATTTTCACCAAATTT----TAT-----A-AAAAGACTTGAGTT--T--AAACACACT--T-C--------AT-AAAAT--GTT-AAA--AAA-----
gi|19 : TT-------TGT-ATCTATAGTACA-TTTTTTC-C---GAATGTT-TTT------------TT-------T-----TT-A-TTTT------------G------GAGGGT--AAT-T--TTAC-AC-TTA-TTTA---TGGTGATA-AGG-GTTC-A-TAAAG-TTTTTGTAG------
gi|2 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTT-CGTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CTGAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTA--TTTAAGCACACTC-G-C--------AT-TAAATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|20 : gAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTC----------GC-AAAT-GATGAAAGGAACA--AAAGCCAGTAGTTTTAGAC-A--AAATTT-------TGT-ATCTA--GTACA-TTTTCCC-C---GA----g
gi|21 : TTTT--T-CT-TTGC-AAAT-GATGAAAGGAACT--ATAGTCAGTACTTTTAGAC-A-GAAATTG-------TGT-ACCTA--GTACATTTTTTTC-C---GA----A-ATT------------GT-------T-----TT-G-ATTG------------G------G-GGG
gi|22 : TGTCAATAAA-GAA--CTGAAAAAGTTGTAGACGTT-TTATTATCTGATTTTAACAAAATTT----TAT-----T-AAAAGACTTAAGTA--T--AAACACACT--G-C--------AT-AAAAT--GTg
gi|23 : GTGGTTTAAAAAA-------------AGGCACA--AACT-GA---TTTT-TGTC-CCATTTT-TA-AA-TA---A---GTTA-AAATCATTT-TTa
gi|24 : ggT-A-TTTT------------GATATCCG-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGAT
gi|25 : aaaaGAACT-ACTTT--CCACGTTAG-AGTAA--CACCTTC-AAAAGAA
gi|26 : -AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-
gi|3 : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTC-TTCT--T-T-A-ATA-AT-TTTAGGTTGA-ATAT--ACATTGA-AGTTC-ATAAATCCAAAAGGGCATCATTGTCAATAAA-AAA--CTGAAAAAGTTGTAGACTTA-TTATTATCTGGCTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------TT-AAAAT--ATT-TAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--TTAGTGAGTAGTTTTAAAC-C-GAATTTT-------TGT-ATCTA--GTACA-TTTTTCC-C---AAT---T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAG-T--TTAC-CT-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTC-AATAAA-AA-TG-A--AAATGAACT-ACTTT--ACACATCAG-AGTAA--TGCCTTT-GAAAGAA
gi|4 : TCAAAAA-TA-AT------GAGGC-CAGCAACT-GAAATTTTTTTGTC-A-ATTTT-CA-AA-TA-------GTTGTAAATCATTT-TTTC--T-TTG-ATA-AT-TTTAGGTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCATTACTGTCAATTAA-GAGCTCTGAAAAAGTTGTAGACTTA-TAATTATTTGGTTTTCACAAAATTT----CAT-----A-AAAAGACTAGAGTATCT--AAGCAAACT--GCC--------AT-AAAAT--ATT--AA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATGGATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-CAAAAA----T-ATT------------TT-------G-----AT-A-TTC--------------------G-GGGT--AAT-T--TTCCTCC-TTA-TTTT---T-GTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------T
gi|5 : -AT-TTTAGTTTGT-ATAT--ATATTGA-AGTTC-ATCAATCCAAAAGGGCGTTATTGTCAATAAA-AAAAACTTACAAAGATGTAGATTTA-TTATTATCTGGTTTTCACAGGGTTT----TTTTTTTTA-AAAAGACTACAGTG--T--AAGCACACT--G-CGTAAAATCAT-AAAAT--ATT-AAA--AGA-----CAA-A-TTCAAAG-CACATTTTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATGATCAGTAGTTTTAGAC-A-GAAATGT-------TGT-ATCTA--GTACA-TTTTACC-C---GA-----------------------AACAAAAT-----TG-A-TTTTGGGATGGGGGGGG------G-GGGT--AAT-T--TTCC-CC-TTA-CTCT---TGGTACTG-AGG-GTTCAA-TAA---TTTATGTAG------TTT--T-----A------AAAAATGTT--ATAAA-AAGTG-A--AAATGAACT-ACTTT--CCAC
gi|6 : GTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTTA-TGTA-A-ATTTT-CA-AA-TA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATATATACATTGA-AGTTC-ACAAATTCAAAA-GGCGTTATTATCAATAAA-GAA--CTGAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TA--T-----CA--------------------AAAAC--AT----------------------TCAAAA-CATAAATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA-----------------------AAAAAA-T-----TG-A-TTTG------------G------G-GAGT--AAT-T--TTCC-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTGTAC------TTT--a
gi|7 : tggGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTAT--GT--A-ATTTT-CA-AAATA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATATATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTAT-AATAAA-GA---CTGAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TA--T-----CA--------------------AAAAC--AT----------------------TCAAAA-T---AATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTAAA-TTTTT-C-C---GA-------------------------------AAAAATT-G-ATTT------------G------G-GAGT--AAT-T--TT-C-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTG-AC------TTT--T-----A------AAAAA
gi|8 : gCCAAAAGGGCATCATTGTCAATAAA-AAA--CTGAAAAAGTTGTAGACTTA-TTATTATATGGTTTTCACAAAATTT----TAT-----A-AAAAGACTACAGTA--T--AAGCACACT--G-C--------TT-AAAAT--ATT-AAA--AAAAAAAACAA-A-TTCAAAA-CATGATTTTT--TTCT-TTGC-AAAT-GATAAAAGGAACA--ATAGTCATTAGTTTTAGAC-A-TAAATTT-------TGT-ATCTA--TTACA-TTTTTTC-C---GA----T-TTT------------TT-------T-----TTTA-TTTT------------G------GAGGGT--ACT-T--TTAC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACATTAG-AGTAA--CACCTTC-GAAAGAA
gi|9 : ATTATCTGGTTTTAACAAAATTTTAAGTAT-----A-AGAAAA-------A--A--AAGCACACTGGG-C--------ATAAAAAT--ATT-AAA--AAA-----CAA-AGTTCACCA-CATGATTTTTAGT-CA-TTAC-AAAT-GATGAAAGGAA------AATC---------AGACAA-GAAA-----------AA-ATCTA--GT-CA-TTTTTCC-C---AA----T-TTTTTTTTTTTTTTTTT-------T-----TT-ACTTTT------------G------G-GGGT--AAA-T--TTCC-TCGCTACTTTT---TAGTGATG-GGGCGTTC-A-GAAAGTTTTTTGTAG------TTT--T-----CTTTTTTAAGAATATTAAATAAA-AA-TGAA--AAATGAACTAACTTTCCCCACGTTTGAAGTAA--C-CCTTCGGAAAGAA
Alignments
lowQualScore : 222222 1111111 22 22 44444444444444444444444444444444444444444 1111111111111111111 222222222222 11
lowQualScore : 1 8 8 555555 66 8 77 8 4 8 8 4 8888888 4 8 11 8 3 4 8 8 1 55 11 8 8 0 0 55 99 77 6666 77777 2 7 2222 33 66 9999999999999 2 66 55 33 66666 2 2 5 8 33 2 5 5 22 66 1 2 4 3 7777777 4 33 2 4 66666666666666666666666666666666666666666 2 2 6666666666666666666 4 66 4 33 1 2 2 2 888 1 5 2 2 2 5 888888 44 555555555555 44 8 4 4 11 3 66 5 8888 5
lowQualScore : . . . ...... .. . .. . . . . . ....... . . .. . . . . . . .. .. . . . . .. .. .. .... ..... . . .... .. .. ............. . .. .. .. ..... . . . . .. . . . .. .. . . . . ....... . .. . . ......................................... . . ................... . .. . .. . . . . ... . . . . . . ...... .. ............ .. . . . .. . .. . .... .
lowQualScore : 9 9 9 666666 11 0 88 0 0 0 0 0 1111111 0 0 11 9 6 4 0 0 9 88 77 9 9 5 2 77 22 77 1111 11111 7 3 6666 44 99 8888888888888 5 55 22 77 77777 9 9 3 9 77 7 3 0 77 55 2 4 7 2 6666666 7 22 2 4 66666666666666666666666666666666666666666 2 2 1111111111111111111 4 55 7 22 2 4 4 4 222 6 3 9 9 9 7 222222 66 555555555555 88 0 0 0 00 6 11 0 5555 0
consensus : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
Reference ( family-2195 ) : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
gi|1 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTT-CGTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CTGAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTA--TTTAAGCACACTC-G-C--------AT-TAAATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|10 : gGTGGTTTCAAACA-TA-AT------GAGGCACA--AAC------ATTTT-TGTC-A-ATTTT-CA-AA-TA---G---TTTG-AAATTATCT-GGTT--T-TCACAAA-AT-TTTAg
gi|10 : tatttcatgcaaatgaaaagtggaagagacgtaaatggATTATCTGGTTTTCACAAAATTT----TAT-----ATAAAAAA-------------AAGCCCACT--G-T--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGATTTTT--T-CA-TTAC-AAAT-GATGAAAGGAAAA--ATAGTAAGTAGTTTTAGAC-A-GAAA--------------ATCTA--GTACA-TTTTTCC-C---AA------TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCC-CC-TTA-TCTT---TAGTGATG-GGG-GTTC-A-GAAAG-TTTTTGTAG------TTT--TTTTTAA------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-Atataaaaaaaagcccactgtataaaatattaaaaaacaaattcaaaacatgattttttcattacaaatgatgaaaggaaaaatagtaagtagttttagacagaaaatctagtacatttttcccaattttttttacttttggggtaaatttccccttatctttagtgatgggggttcagaaagtttttgtagttttttttaaagaaatattaataaaaatgaaaatgaacta
gi|11 : tatttcatgcaaatgaaaagtggaagagacgtaaatgggtggtttcaaacataatgaggcacaaacatttttgtcaattttcaaatagtttgaaGTGGTTTCAAAAA-TA-AA------GAGACACA--CATT-TGACATTTT-TGTA-A-ATTTT-CA-AA-TACATGTACGCTG-AAATTATTT---AT--T-TTG-ATA-AT-TGTAGTTTGC--TGT--ACATTGA-AGTTC-AAAAATCCAAAAGAGCATTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTT-TTGTTATCTGATCTTCACAAAATTT----TAT-----A-AAA-----AGAGTA--T--AAACACAAT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATAA--TTT--T-AT-TTGC-AAAT-CATGAAAGGAACA--ATAATCAGTGGTATT-GAC-A-AA
gi|12 : g--T--AAGCACACT--G-C--------AT-AAAAT--ATT-GA
gi|12 : aagctcaccctacaacatcct-AAAT-ATTGATAGGAACA--ATAATCAGTAGTTTCAGAG-A-GAAATTT-------TAT-ATCTA--GTACA-TTTTTCC-A---GA----AATTT------------TT-------T-----TG-A-TTTT------------G------G-AGGT--AAT-T--TTTC-CC-TTA-CTTT---TGATGATG-AGG-GTTC-A-TTAAG-TTTTTGTAG------TTTTAT-----A------AAAAGTGCT---TAAA-AA-TG-A--AATCAAACT-ACTAT--CCACGTTAG-AGTAA--CGCCTTT-AAAtaggaacaataatcagtagtttcagagagaaattttatatctagtacatttttccagaaatttttttgattttggaggtaatttttcccttacttttgatgatgagggttcattaagtttttgtagttttataaaaagtgcttaaaaatgaaatcaaactactatccacgttagagtaacgcctttaaa
gi|13 : aagctcaccctacaacatccttaagcacactgcataGGGTTTCACAACATTT----TAT-----G-AATAGACTAGAGTA--T--AAACACACT--A-C--------CT-AAATT--ATT-AAAATAAA-----CAATA-AACAAAA-CA
gi|13 : AA--AAC-----CAA-A-TTTAAAA-TATGTATTTT--T-CT-ATGC-AAA----------GAATA--ATTG---ATAATTTTAGAC-G-GCAATTTTTGTACATGT-ATCAA--GTA-A-TTTTCCC-C---CA----A-AAT------------AT-------T-----TG-A-TTTT------------T------G-AGGT--AAT-C--TTCC-CC-TTA-TTAT---TTGTGaaaacaaaaaacaaacaaaaccaaatttaaaatatgtatttttctatgcaaagaataattgataattttagacggcaatttttgtacatgtatcaagtaattttcccccaaaatatttgatttttgaggtaatcttccccttattatttgtg
gi|14 : gggtttcacaacattttatgaatagactagagtataaacacactacctaaattattaaaataaacaataaacaaaacaaaaacaaaaaacaaacATGAAAGGTTCA--ATAATCAGTAGTTTTAGAC-A-GAAATTA-------TGT-ATCTA--GTACA-TTTTTCC-A---GAAAAAT-TTT------------TG----------------A-GTTT------------G------G-GGAT--AAT-TAATTCC-CC-TTA-CTTT---TGGTGATG-AGG-GTTC-AATTAAG-TTTTTGTAG------CTT--T-----A------AAAAATGTT-ATCAAA-AA-TG-A--AAATTAACT-ACTTT--CCATGATAG-AATAAATAGCCTTC-AAAAGAA
gi|15 : atttcgcaggggt-CATGAATTTT--T-CT-TTGC-AATT-GATGAAAGAAACA--ATAGTTAGTAATTTTAGAC-A-GAAA-TT-------TGT-ATCTA--GTACA-TTTTCCC-CTG-AA----A-CAT------------TT-------T-----TT-A-TTCG------------G------G-AGGT--AAT-T--TTCC-TC-TTA-TTTT---TGGTGATG-
gi|16 : ACT-GAAAATTTT--GTC-C-ATTTT-CA-AA-TA---C---ATCG-AAGTCATTT-TTCT--T-T-G-GTA-AT-TTTAAGTTGTTATAT--ACATTAA-AGTTC-ATAAATCCAAAAGGGAATT-------------GAA--CTGAAAATGTTGTAA---TT-TTATT
gi|17 : CA-TTTTTTT-T---T-----T-TTT------------TT-------T-----TT-A-CTTT------------T------G-GGGT--AAA-T--TTCT-CC-TTA-TTTT---TAGTGATG-GGG-GTTC-A-GAAAGTTTTTTGTAGTTTTTCTTT--T-----A------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-
gi|18 : cAAAAGCGTTATTGTCAATAAAAGAA--ATGAAAAAGTTGTAGACTTT-TTATTATCAGATTTTCACCAAATTT----TAT-----A-AAAAGACTTGAGTT--T--AAACACACT--T-C--------AT-AAAAT--GTT-AAA--AAA-----
gi|19 : TT-------TGT-ATCTATAGTACA-TTTTTTC-C---GAATGTT-TTT------------TT-------T-----TT-A-TTTT------------G------GAGGGT--AAT-T--TTAC-AC-TTA-TTTA---TGGTGATA-AGG-GTTC-A-TAAAG-TTTTTGTAG------
gi|2 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTT-CGTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATAT-TACATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CTGAAAAAGTTGTAGACCTAATTATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTA--TTTAAGCACACTC-G-C--------AT-TAAATTGATTTAAA--AAA-----CAA-A-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A--AT-AGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA----T-TTT------------GT-------T-----TT-A-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-A-TAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|20 : gAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTC----------GC-AAAT-GATGAAAGGAACA--AAAGCCAGTAGTTTTAGAC-A--AAATTT-------TGT-ATCTA--GTACA-TTTTCCC-C---GA----g
gi|21 : TTTT--T-CT-TTGC-AAAT-GATGAAAGGAACT--ATAGTCAGTACTTTTAGAC-A-GAAATTG-------TGT-ACCTA--GTACATTTTTTTC-C---GA----A-ATT------------GT-------T-----TT-G-ATTG------------G------G-GGG
gi|22 : TGTCAATAAA-GAA--CTGAAAAAGTTGTAGACGTT-TTATTATCTGATTTTAACAAAATTT----TAT-----T-AAAAGACTTAAGTA--T--AAACACACT--G-C--------AT-AAAAT--GTg
gi|23 : GTGGTTTAAAAAA-------------AGGCACA--AACT-GA---TTTT-TGTC-CCATTTT-TA-AA-TA---A---GTTA-AAATCATTT-TTa
gi|24 : ggT-A-TTTT------------GATATCCG-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGAT
gi|25 : aaaaGAACT-ACTTT--CCACGTTAG-AGTAA--CACCTTC-AAAAGAA
gi|26 : -AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-
gi|3 : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTC-TTCT--T-T-A-ATA-AT-TTTAGGTTGA-ATAT--ACATTGA-AGTTC-ATAAATCCAAAAGGGCATCATTGTCAATAAA-AAA--CTGAAAAAGTTGTAGACTTA-TTATTATCTGGCTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------TT-AAAAT--ATT-TAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--TTAGTGAGTAGTTTTAAAC-C-GAATTTT-------TGT-ATCTA--GTACA-TTTTTCC-C---AAT---T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAG-T--TTAC-CT-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTC-AATAAA-AA-TG-A--AAATGAACT-ACTTT--ACACATCAG-AGTAA--TGCCTTT-GAAAGAA
gi|4 : TCAAAAA-TA-AT------GAGGC-CAGCAACT-GAAATTTTTTTGTC-A-ATTTT-CA-AA-TA-------GTTGTAAATCATTT-TTTC--T-TTG-ATA-AT-TTTAGGTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCATTACTGTCAATTAA-GAGCTCTGAAAAAGTTGTAGACTTA-TAATTATTTGGTTTTCACAAAATTT----CAT-----A-AAAAGACTAGAGTATCT--AAGCAAACT--GCC--------AT-AAAAT--ATT--AA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATGGATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-CAAAAA----T-ATT------------TT-------G-----AT-A-TTC--------------------G-GGGT--AAT-T--TTCCTCC-TTA-TTTT---T-GTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------T
gi|5 : -AT-TTTAGTTTGT-ATAT--ATATTGA-AGTTC-ATCAATCCAAAAGGGCGTTATTGTCAATAAA-AAAAACTTACAAAGATGTAGATTTA-TTATTATCTGGTTTTCACAGGGTTT----TTTTTTTTA-AAAAGACTACAGTG--T--AAGCACACT--G-CGTAAAATCAT-AAAAT--ATT-AAA--AGA-----CAA-A-TTCAAAG-CACATTTTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATGATCAGTAGTTTTAGAC-A-GAAATGT-------TGT-ATCTA--GTACA-TTTTACC-C---GA-----------------------AACAAAAT-----TG-A-TTTTGGGATGGGGGGGG------G-GGGT--AAT-T--TTCC-CC-TTA-CTCT---TGGTACTG-AGG-GTTCAA-TAA---TTTATGTAG------TTT--T-----A------AAAAATGTT--ATAAA-AAGTG-A--AAATGAACT-ACTTT--CCAC
gi|6 : GTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTTA-TGTA-A-ATTTT-CA-AA-TA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATATATACATTGA-AGTTC-ACAAATTCAAAA-GGCGTTATTATCAATAAA-GAA--CTGAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TA--T-----CA--------------------AAAAC--AT----------------------TCAAAA-CATAAATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA-----------------------AAAAAA-T-----TG-A-TTTG------------G------G-GAGT--AAT-T--TTCC-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTGTAC------TTT--a
gi|7 : tggGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTAT--GT--A-ATTTT-CA-AAATA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATATATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTAT-AATAAA-GA---CTGAAAAAGTTGCAGACTTT-TTATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TA--T-----CA--------------------AAAAC--AT----------------------TCAAAA-T---AATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTAAA-TTTTT-C-C---GA-------------------------------AAAAATT-G-ATTT------------G------G-GAGT--AAT-T--TT-C-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-A-TCAAG-TTTTTG-AC------TTT--T-----A------AAAAA
gi|8 : gCCAAAAGGGCATCATTGTCAATAAA-AAA--CTGAAAAAGTTGTAGACTTA-TTATTATATGGTTTTCACAAAATTT----TAT-----A-AAAAGACTACAGTA--T--AAGCACACT--G-C--------TT-AAAAT--ATT-AAA--AAAAAAAACAA-A-TTCAAAA-CATGATTTTT--TTCT-TTGC-AAAT-GATAAAAGGAACA--ATAGTCATTAGTTTTAGAC-A-TAAATTT-------TGT-ATCTA--TTACA-TTTTTTC-C---GA----T-TTT------------TT-------T-----TTTA-TTTT------------G------GAGGGT--ACT-T--TTAC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACATTAG-AGTAA--CACCTTC-GAAAGAA
gi|9 : ATTATCTGGTTTTAACAAAATTTTAAGTAT-----A-AGAAAA-------A--A--AAGCACACTGGG-C--------ATAAAAAT--ATT-AAA--AAA-----CAA-AGTTCACCA-CATGATTTTTAGT-CA-TTAC-AAAT-GATGAAAGGAA------AATC---------AGACAA-GAAA-----------AA-ATCTA--GT-CA-TTTTTCC-C---AA----T-TTTTTTTTTTTTTTTTT-------T-----TT-ACTTTT------------G------G-GGGT--AAA-T--TTCC-TCGCTACTTTT---TAGTGATG-GGGCGTTC-A-GAAAGTTTTTTGTAG------TTT--T-----CTTTTTTAAGAATATTAAATAAA-AA-TGAA--AAATGAACTAACTTTCCCCACGTTTGAAGTAA--C-CCTTCGGAAAGAA
blockSeqs : T A G ACTGCC GC C TT C C T C A CATGTAC T C GT G C C T C T TT AT T T AG CT AA TAAG TTTTT T A CTAG TC TT GCGTAAAATC A TG TA AT AAAAA T G G T AG T G A TG AT A A T T TTGTACA C TA T A AATTTTTTTTTTTTTTTTTTT T C GGGATGGGGGGGG A AG A AA C T G C ATA A A C A A T TTTTTC TA CTTTTTT AA C G A AT A CC A ATAG G
blockSeqs : T A . . . . T . . . . . G . . GT G T . . . T C AT . . G AA T . . . A CTTG . . GGGC . . A . . . . . A . . . A T AT C . . T . . . . . GAATGTTTTTTTT . . GATATCC A . . . T . . . . A . . . . T . . TTTTAA A . . . . . . . CG .
blockSeqs : T . . . . . T . . . . . C . . C . T . . . T A T . . G . T . . . A CTAG . . CGC . . A . . . . . A . . . . T . C . . T . . . . . GAAAAATTTTTG . . T . . . . C . . . . A . . . . . . . ATAA A . . . . . . . CT .
blockSeqs : T . . . . . C . . . . . G . . . . T . . . T A T . . G . T . . . A CTTA . . GCC . . G . . . . . A . . . . T . C . . T . . . . . AAAAATTTTGTT . . G . . . . C . . . . A . . . . . . . A A . . . . . . . CA .
blockSeqs : T . . . . . T . . . . . A . . . . T . . . T T . . . A . T . . . A CTAG . . GT . . A . . . . . A . . . . T . T . . T . . . . . AAAAATATTTTG . . T . . . . C . . . . A . . . . . . . A A . . . . . . . TG .
blockSeqs : T . . . . . T . . . . . G . . . . T . . . T T . . . G . A . . . A CTAG . . GC . . A . . . . . A . . . . T . C . . T . . . . . TGAAACATTTT . . G . . . . C . . . . A . . . . . . . A A . . . . . . . CA .
blockSeqs : T . . . . . T . . . . . C . . . . . . . . T T . . . A . A . . . A CTAG . . GC . . A . . . . . T . . . . T . C . . T . . . . . GAAATTTTTT . . G . . . . A . . . . A . . . . . . . A A . . . . . . . C .
blockSeqs : . . . . . . . . . . . . C . . . . . . . . . T . . . G . A . . . A CTAC . . AC . . T . . . . . A . . . . T . G . . T . . . . . AATTTTTTTT . . T . . . . G . . . . A . . . . . . . A . . . . . . .
blockSeqs : . . . . . . . . . . . . G . T . . . A CTAC . . TC . . A . . . . . A . . . . T . C . . T . . . . . GAAACAAAAT . . G . . . . C . . . . A . . . . . . . A . . . . . .
blockSeqs : A . T . . . A AG . . GC . . A . . . . . T . . . . T . C . . G . . . . . CAAAATATT . . T . . . . A . . . . C . . . . . . . A .
blockSeqs : . . A . . . . . . . GC . . A . . . . . T . . . . T . C . . G . . . . . GAAATTGTT . . G . . . . C . . . . C . . . . . . .
blockSeqs : . . . . . . . GC . . . . . . . . . . . . . T . C . . T . . . . . GAAAAAAAT . . G . . . . C . . . . C . . . . . .
blockSeqs : . . . . . . . GC . . . . . . . . . . . . . T . C . . . . . . . . GATTTTTTT . . G . . . . C . . . . A . . . . . .
blockSeqs : . . . . . . . . . . . . . . . . . . C . . . . . . . . AATTTTTT . . G . . . . A . . . . A .
blockSeqs : . . . . . . . . . . . . . . . . . TTTTTTTT . . G . . . . C . . . . .
blockSeqs : . . . . . . . . . . GAAAAAA . . G . . . . . . . . .
blockSeqs : . . . . . .
blockSeqCons : ****** ** ** G* T* ** GC*********** ** A* T* GAAATTTTTT******************************* ** *** A*********** **
originalCons : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-TACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CTGAAAAAGTTGTAGACTTN-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACT--G-C--------AT-AAAAT--ATT-AAA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C---GA----T-TTT------------TT-------T-----TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
finalCons : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTT-TGTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT--ACATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAAG-AA--CTGAAAAAGTTGTAGACTTT-TTATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTA--T--AAGCACACTGC-----------AT-AAAAT--ATTA-AA--AAA-----CAA-A-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-CGAAATTTTTT-------------------------------TT-A-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-A-TAAAG-TTTTTGTAG------TTT--TA-----------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
Alignments
lowQualScore : 222222 1111111 22 1111 11 11111111 11111111111111111 1111111111 222222222222222222222 1111111111111111111 222222222222 11
lowQualScore : 1 8 8 555555 66 8 77 8 4 8 8 4 3333333 4 8 11 8 3 4 8 8 1 55 6666 8 8 0 55 44 44 99 555 6666 77777 2 7 2222 00 88 99999999 5 66 55555 77777777777777777 9999999999 3 5 8 33 2 5 5 22 66 2 2 4 3 7777777 4 33 2 4 99 111111111111111111111 3333 0 2 6666666666666666666 4 66 4 33 1 2 2 2 888 1 5 2 5 5 888888 44 555555555555 44 8 4 4 11 3 66 5 8888 5
lowQualScore : . . . ...... .. . .. . . . . . ....... . . .. . . . . . . .. .... . . . .. .. .. .. ... .... ..... . . .... .. .. ........ . .. ..... ................. .......... . . . .. . . . .. .. . . . . ....... . .. . . .. ..................... .... . . ................... . .. . .. . . . . ... . . . . . ...... .. ............ .. . . . .. . .. . .... .
lowQualScore : 9 9 9 666666 11 0 88 0 0 0 0 0 1111111 0 0 11 9 6 4 0 0 9 88 6666 9 9 2 77 66 66 22 000 1111 11111 7 3 6666 33 44 77777777 0 55 99999 11111111111111111 6666666666 1 7 9 77 7 3 0 77 55 5 4 7 2 6666666 7 22 4 7 11 444444444444444444444 5555 3 2 1111111111111111111 4 55 7 22 2 4 4 4 222 6 3 9 7 7 222222 66 555555555555 88 0 0 0 00 6 11 0 5555 0
consensus : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-A--CATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTN-TT---ATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GC--------AT-AAAAT--A-----T--------------T-AAAAAA----------CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C-GAAA---TTT-------------T-T----TTTA-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-ATAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
Reference ( family-2195 ) : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTT-TTCT--T-TTG-ATA-AT-TTTAGTTTGT-ATAT-A--CATTGA-AGTTC-ATAAATCCAAAAGGGCGTTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTT-TT---ATTATCTGGTTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GC--------AT-AAAAT--A-----T--------------T-AAAAAA----------CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C-GAAA---TTT-------------T-T----TTTA-TTTT------------G------G-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-ATAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACGTTAG-AGTAA--CGCCTTC-GAAAGAA
gi|1 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATATTA--CATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CT--GAAAAAGTTGTAGACCTAATT---ATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTATTTAAGCACACTC-GC--------AT-TAAATTGA-----T--------------TTAAAAAA----------CAAA-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A-A--TAGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA---TTT-------------TGT----TTTA-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-ATAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|10 : gGTGGTTTCAAACA-TA-AT------GAGGCACA--AAC------ATTTTT-GTC-A-ATTTT-CA-AA-TA---G---TTTG-AAATTATCT-GGTT--T-TCACAAA-AT-TTTAg
gi|10 : tatttcatgcaaatgaaaagtggaagagacgtaaatgg---ATTATCTGGTTTTCACAAAATTT----TAT-----ATAAAAAA-----------AAGCCCACT--GT--------AT-AAAAT--A-----T--------------T-AAAAAA----------CAAA-TTCAAAA-CATGATTTTT--T-CA-TTAC-AAAT-GATGAAAGGAAAA--ATAGTAAGTAGTTTTAGAC-A-GAAA--------------ATCTA--GTACA-TTTTTCC-C---AA---TTT-------------T-T----TTTA-CTTT------------T------G-GGGT--AAA-T--TTCC-CC-TTA-TCTT---TAGTGATG-GGG-GTTC-AGAAAG-TTTTTGTAG------TTT--TTTTTAA------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-Atataaaaaaaagcccactgtataaaatattaaaaaacaaattcaaaacatgattttttcattacaaatgatgaaaggaaaaatagtaagtagttttagacagaaaatctagtacatttttcccaattttttttacttttggggtaaatttccccttatctttagtgatgggggttcagaaagtttttgtagttttttttaaagaaatattaataaaaatgaaaatgaacta
gi|11 : tatttcatgcaaatgaaaagtggaagagacgtaaatgggtggtttcaaacataatgaggcacaaacatttttgtcaattttcaaatagtttgaaGTGGTTTCAAAAA-TA-AA------GAGACACA--CATT-TGACATTTTT-GTA-A-ATTTT-CA-AA-TACATGTACGCTG-AAATTATTT---AT--T-TTG-ATA-AT-TGTAGTTTGC--TGT-A--CATTGA-AGTTC-AAAAATCCAAAAGAGCATTATTGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACTTT-TT---GTTATCTGATCTTCACAAAATTT----TAT-----A-AAA-----AGAGTAT--AAACACAAT--GC--------AT-AAAAT--A-----T--------------T-AAAAAA----------CAAA-TTCAAAA-CATAA--TTT--T-AT-TTGC-AAAT-CATGAAAGGAACA--ATAATCAGTGGTATT-GAC-A-AA
gi|12 : gT--AAGCACACT--GC--------AT-AAAAT--A-----T--------------T-GA
gi|12 : aagctcaccctacaacatcct-AAAT-ATTGATAGGAACA--ATAATCAGTAGTTTCAGAG-A-GAAATTT-------TAT-ATCTA--GTACA-TTTTTCC-A-GAAA---TTT-------------T-T----TTGA-TTTT------------G------G-AGGT--AAT-T--TTTC-CC-TTA-CTTT---TGATGATG-AGG-GTTC-ATTAAG-TTTTTGTAG------TTTTAT-----A------AAAAGTGCT---TAAA-AA-TG-A--AATCAAACT-ACTAT--CCACGTTAG-AGTAA--CGCCTTT-AAAtaggaacaataatcagtagtttcagagagaaattttatatctagtacatttttccagaaatttttttgattttggaggtaatttttcccttacttttgatgatgagggttcattaagtttttgtagttttataaaaagtgcttaaaaatgaaatcaaactactatccacgttagagtaacgcctttaaa
gi|13 : aagctcaccctacaacatccttaagcacactgcataGGGTTTCACAACATTT----TAT-----G-AATAGACTAGAGTAT--AAACACACT--ACCTAAATT-ATTAAAAT--AAACAATAAACAAAACAAAAAC-AAAAAACAAACAAAACCAAA-TTTAAAA-TATGTATTTT--T-CT-ATGC-AAA----------GAATA--ATTG---ATAATTTTAGAC-G-GCAATTTTTGTACATGT-ATCAA--GTA-A-TTTTCCC-C-CAAA----AT-------------A-T----TTGA-TTTT------------T------G-AGGT--AAT-C--TTCC-CC-TTA-TTAT---TTGTG
gi|14 : ATGAAAGGTTCA--ATAATCAGTAGTTTTAGAC-A-GAAATTA-------TGT-ATCTA--GTACA-TTTTTCC-A-GAAA---AAT-------------T-T----TTGA-GTTT------------G------G-GGAT--AAT-TAATTCC-CC-TTA-CTTT---TGGTGATG-AGG-GTTCAATTAAG-TTTTTGTAG------CTT--T-----A------AAAAATGTT-ATCAAA-AA-TG-A--AAATTAACT-ACTTT--CCATGATAG-AATAAATAGCCTTC-AAAAGAA
gi|15 : atttcgcaggggt-CATGAATTTT--T-CT-TTGC-AATT-GATGAAAGAAACA--ATAGTTAGTAATTTTAGAC-A-GAAA-TT-------TGT-ATCTA--GTACA-TTTTCCC-CTGAAA---CAT-------------T-T----TTTA-TTCG------------G------G-AGGT--AAT-T--TTCC-TC-TTA-TTTT---TGGTGATG-
gi|16 : ACT-GAAAATTTT--GTC-C-ATTTT-CA-AA-TA---C---ATCG-AAGTCATTT-TTCT--T-T-G-GTA-AT-TTTAAGTTGTTATAT-A--CATTAA-AGTTC-ATAAATCCAAAAGGGAATT-------------GAA--CT--GAAAATGTTGTAA---TT-TT---ATT
gi|17 : ---TTT-------------T-T----TTTA-CTTT------------T------G-GGGT--AAA-T--TTCT-CC-TTA-TTTT---TAGTGATG-GGG-GTTC-AGAAAGTTTTTTGTAGTTTTTCTTT--T-----A------AGAAATATT-AATAAA-AA-TG-A--AAATGAACT-
gi|18 : ccattttttttttAAAAGCGTTATTGTCAATAAAAGAA--AT--GAAAAAGTTGTAGACTTT-TT---ATTATCAGATTTTCACCAAATTT----TAT-----A-AAAAGACTTGAGTTT--AAACACACT--TC--------AT-AAAAT--G-----T--------------T-AAAAAA----------
gi|19 : TT-------TGT-ATCTATAGTACA-TTTTTTC-C-GAATGTTTTT-------------T-T----TTTA-TTTT------------G------GAGGGT--AAT-T--TTAC-AC-TTA-TTTA---TGGTGATA-AGG-GTTC-ATAAAG-TTTTTGTAG------
gi|2 : GTGGTT-CAAAAA-TAGATACTGCCGACACACT--AACTCGAAAATTTTC-GTCCA-ATTTTTCACAA-TA---G---GTTG-AAATCATTTCTTCTC-T-TTG-ATATATCTTTAGTT-GA-ATATTA--CATTTATAGTGCTATCAATCCAAA--GGCATAATTGTCAATCAA--AA--CT--GAAAAAGTTGTAGACCTAATT---ATTATCTGCTTTTCACAAA-TTT----TAT-----A-AAA-GACTAGAGTATTTAAGCACACTC-GC--------AT-TAAATTGA-----T--------------TTAAAAAA----------CAAA-TTCAAAAGCATGA--TTC--A-CTGTTGC-AAA--GATTGAAAGAACA--A-A--TAGTAGTTTTAGAC-ATGAATTTT-------TGTCAT-TA---TACA-TTTTTCCACAAAAA---TTT-------------TGT----TTTA-TTTT------------T------G-GGGTAGAGTAT--TAGC-CT-TTA-TTTTATATGGTG-TGAAGG-GTTC-ATAAA---TTTTGTAG------TGT--TATA--A------AAAAATGTC-AATAAACAA-TG-AATAAGTGAACT-ACTTT--ACACATCAT-GTTTG--CTCTTTT-GAAAGA
gi|20 : gAT--A-----T--------------T-AAAAAA----------CAAA-TTCAAAA-CATGAATTC----------GC-AAAT-GATGAAAGGAACA--AAAGCCAGTAGTTTTAGAC-A--AAATTT-------TGT-ATCTA--GTACA-TTTTCCC-C-GAg
gi|21 : TTTT--T-CT-TTGC-AAAT-GATGAAAGGAACT--ATAGTCAGTACTTTTAGAC-A-GAAATTG-------TGT-ACCTA--GTACATTTTTTTC-C-GAAA---TTG-------------T-T----TTGA---TT------------G------G-GGG
gi|22 : TGTCAATAAA-GAA--CT--GAAAAAGTTGTAGACGTT-TT---ATTATCTGATTTTAACAAAATTT----TAT-----T-AAAAGACTTAAGTAT--AAACACACT--GC--------AT-AAAAT--G-----T--------------gg
gi|23 : GTGGTTTAAAAAA-------------AGGCACA--AACT-GA---TTTTT-GTC-CCATTTT-TA-AA-TA---A---GTTA-AAATCATTT-TTa
gi|24 : ggTA-TTTT------------GATATCCG-GGGT--AAT-T--TTCC-CC-TTA-TTTT---TGGTGAT
gi|25 : aaaaGAACT-ACTTT--CCACGTTAG-AGTAA--CACCTTC-AAAAGAA
gi|26 : -AAAAGACTAGAGTAT--AAGCACACT--GC--------AT-AAAAT--A-----T--------------T-
gi|3 : GTGGTTTCAAAAA-TA-AT------GAGGCACA--AACT-GAAAATTTTT-GTC-A-ATTTT-CA-AA-TA---G---GTTG-AAATCATTC-TTCT--T-T-A-ATA-AT-TTTAGGTTGA-ATAT-A--CATTGA-AGTTC-ATAAATCCAAAAGGGCATCATTGTCAATAAA-AAA--CT--GAAAAAGTTGTAGACTTA-TT---ATTATCTGGCTTTCACAAAATTT----TAT-----A-AAAAGACTAGAGTAT--AAGCACACT--GC--------TT-AAAAT--A-----T--------------T-TAAAAA----------CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--TTAGTGAGTAGTTTTAAAC-C-GAATTTT-------TGT-ATCTA--GTACA-TTTTTCC-C-AATT---TTT-------------T-T----TTTA-TTTT------------G------G-GGGT--AAG-T--TTAC-CT-TTA-TTTT---TGGTGATG-AGG-GTTC-ATAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTC-AATAAA-AA-TG-A--AAATGAACT-ACTTT--ACACATCAG-AGTAA--TGCCTTT-GAAAGAA
gi|4 : TCAAAAA-TA-AT------GAGGC-CAGCAACT-GAAATTTTTTTGTC-A-ATTTT-CA-AA-TA---G----TTGTAAATCATTT-TTTC--T-TTG-ATA-AT-TTTAGGTTGT-ATATTA--CATTGA-AGTTC-ATAAATCCAAAAGGGCATTACTGTCAATTAA-GAG--CTCTGAAAAAGTTGTAGACTTA-TA---ATTATTTGGTTTTCACAAAATTT----CAT-----A-AAAAGACTAGAGTATCTAAGCAAACT--GCC-------AT-AAAAT--A-----T--------------T--AAAAA----------CAAA-TTCAAAA-CATGAATTTT--T-CT-TTGC-AAATGGATGAAAGGAACA--ATAGTCAGTAGTTTTAGAC-A-GAAATTT-------TGT-ATCTA--GTACA-TTTTTCC-C-AAAA---ATA-------------T-T----TTGA-TATT------------C------G-GGGT--AAT-T--TTCCTCC-TTA-TTTT---T-GTGATG-AGG-GTTC-ATAAAG-TTTTTGTAG------T
gi|5 : -AT-TTTAGTTTGT-ATAT-A--TATTGA-AGTTC-ATCAATCCAAAAGGGCGTTATTGTCAATAAA-AAAAACT--TACAAAGATGTAGATTTA-TT---ATTATCTGGTTTTCACAGGGTTT----TTTTTTTTA-AAAAGACTACAGTGT--AAGCACACT--GCGTAAAATCAT-AAAAT--A-----T--------------T-AAAAGA----------CAAA-TTCAAAG-CACATTTTTT--T-CT-TTGC-AAAT-GATGAAAGGAACA--ATGATCAGTAGTTTTAGAC-A-GAAATGT-------TGT-ATCTA--GTACA-TTTTACC-C-GAAA---CAA-------------A-A----TTGA-TTTTGGGATGGGGGGGG------G-GGGT--AAT-T--TTCC-CC-TTA-CTCT---TGGTACTG-AGG-GTTCAATAA---TTTATGTAG------TTT--T-----A------AAAAATGTT--ATAAA-AAGTG-A--AAATGAACT-ACTTT--CCAC
gi|6 : GTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTTAT-GTA-A-ATTTT-CA-AA-TA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATAT-ATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTATCAATAAA-GAA--CT--GAAAAAGTTGCAGACTTT-TT---ATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TAT-----CA-------------------AAAAC--A-----T--------------------------------------TCAAAA-CATAAATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTACA-TTTTTCC-C-GAAA----------------------AAAATTGA-TTTG------------G------G-GAGT--AAT-T--TTCC-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-ATCAAG-TTTTTGTAC------TTT--a
gi|7 : tggGTGGCTTAAAAAAATA-AT------GAGGCACA--AACT-GAAAATTAT--GT--A-ATTTT-CA-AAATA---C---GTTG-GAATCATTT-TTTTGTTGTTG-ATA-AT-TTTAGTTTGT-ATAT-ATACATTGA-AGTTC-ACAAATTCAAAAGG-CGTTATTAT-AATAAA-GA---CT--GAAAAAGTTGCAGACTTT-TT---ATTAACTGATTTTCACAAAATTT----TAG-----G-AAA---------TAT-----CA-------------------AAAAC--A-----T--------------------------------------TCAAAA-T---AATTTT--T-AT-TTGCAAAAT-GATGAAAGGAACAATATAATCAGTAGTTTTAGAC-A-AAAAGTT-------TGT-ATCTA--GTAAA-TTTTTCC-G-AAAA---------------------A----ATTG-ATTT------------G------G-GAGT--AAT-T--TT-C-CC-TTA-CATT---TGGTGCTG-AGG-GTTC-ATCAAG-TTTTTG-AC------TTT--T-----A------AAAAA
gi|8 : gCCAAAAGGGCATCATTGTCAATAAA-AAA--CT--GAAAAAGTTGTAGACTTA-TT---ATTATATGGTTTTCACAAAATTT----TAT-----A-AAAAGACTACAGTAT--AAGCACACT--GC--------TT-AAAAT--A-----T--------------T-AAAAAAAAAAA-----CAAA-TTCAAAA-CATGATTTTT--TTCT-TTGC-AAAT-GATAAAAGGAACA--ATAGTCATTAGTTTTAGAC-A-TAAATTT-------TGT-ATCTA--TTACA-TTTTTTC-C-GATT---TTT-------------T-T----TTTA-TTTT------------G------GAGGGT--ACT-T--TTAC-CC-TTA-TTTT---TGGTGATG-AGG-GTTC-ATAAAG-TTTTTGTAG------TTT--T-----A------AAAAATGTT-AATAAA-AA-TG-A--AAATGAACT-ACTTT--CCACATTAG-AGTAA--CACCTTC-GAAAGAA
gi|9 : GTAG---TT-TTGAAATTATCTGGTTTTAACAAAATTTTAAGTAT-----A-AGAAAA-------AA--AAGCACACTGGGC--------ATAAAAAT--A-----T--------------T-AAAAAA----------CAAAGTTCACCA-CATGATTTTTAGT-CA-TTAC-AAAT-GATGAAAGGAA------AATC---------AGACAA-GAAA-----------AA-ATCTA--GT-CA-TTTTTCC-C---AA---TTTTTTTTTTTTTTTTT-T----TTTACTTTT------------G------G-GGGT--AAA-T--TTCC-TCGCTACTTTT---TAGTGATG-GGGCGTTC-AGAAAGTTTTTTGTAG------TTT--T-----CTTTTTTAAGAATATTAAATAAA-AA-TGAA--AAATGAACTAACTTTCCCCACGTTTGAAGTAA--C-CCTTCGGAAAGAA