lowQualScore : 1111111111111111111111111111 11111111111111111 1111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 11111 222222222222 1111111111111 111111 111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 2222222222222222222222222222 55 666666 22 55 4 1 4 8888888 1 55 55555 22222222222222222 333 1 22 3333 2 1 55 1 1 3333333 1 1 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 2 1 6666666666 1 6666666666 1 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 333333 222 1 3333333333 111111 1 1 11 1 3333 1 00000 2 4 000000000000 3333333333333 4 1 111111 1 222 444444 55 4 4 55 55 4 4 1 4 55 4 4 1 1 1 555555 333 1 444444444444444444444444444444444444444444444 22 44 2 55555555 333333333333 2 5555 77777777 33 4 11 33 1 1 11 33333 1 333333 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 22222 1 222222 1111 2 111 1111 4444 1111 2 11 11 11 444444444 1 3333 1 11 111 3333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 11 1 1 88888888888888888888888 1 2222222 111 1 111 333 2222222 11 111 33 111 222 11 11 222 77777777777777777777777777777777777777777 11 2222 111 2222222222 11111
lowQualScore : 4444444444444444444444444444 55 6 777777 11 55 0 5 0 6 3333333 5 55 44444 99999999999999999 111 4 5 33 8888 0 5 55 5 6 5 0000000 0 8 7 3 8 7 9 6 3 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 4 0 5 3 3333333333 0 6666666666 5 888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888 222222 333 3 5555555555 999999 0 3 88 3 0 2 6666 5 00000 0 6 0 6 555555555555 9999999999999 6 0 7 555555 6 6 7 777 6 333333 6 55 6 0 0 55 6 55 0 6 0 5 0 55 0 0 5 6 5 3 5 777777 2 555 55 3 5 444444444444444444444444444444444444444444444 4 77 77 0 44444444 999999999999 0 66 8888 2 33333333 66 11 0 88 55 1 3 3 88 33333 0 666666 2 22222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 77777 3 888888 4444 6 444 7777 8 8 1111 8 7777 0 33 33 33 000000000 0 9999 55 6 33 777 0000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 22 0 3 5 00000000000000000000000 0 6666666 333 0 777 8 8 88 8 99 3 8 777 8 8 8 88 2222222 8 8 8 11 444 66 444 0 222 8 8 3 99 11 99 6 222 6 8 8 88888888888888888888888888888888888888888 33 2 8 0 5 3 5555 3 111 7777777777 6 66666 9
lowQualScore : ............................ .. . ...... .. .. . . . . ....... . .. ..... ................. ... . . .. .... . . .. . . . ....... . . . . . . . . . ........................................................................................................... . . . . .......... . .......... . .......................................................................................................................................................................................................................................................................................................................................................................................... ...... ... . .......... ...... . . .. . . . .... . ..... . . . . ............ ............. . . . ...... . . . ... . ...... . .. . . . .. . .. . . . . . .. . . . . . . . ...... . ... .. . . ............................................. . .. .. . ........ ............ . .. .... . ........ .. .. . .. .. . . . .. ..... . ...... . ................................................................................................................................... ..... . ...... .... . ... .... . . .... . .... . .. .. .. ......... . .... .. . .. ... .................................................................................................... .. . . . ....................... . ....... ... . ... . . .. . .. . . ... . . . .. ....... . . . .. ... .. ... . ... . . . .. .. .. . ... . . . ......................................... .. . . . . . .... . ... .......... . ..... .
lowQualScore : 0000000000000000000000000000 00 0 000000 00 00 0 0 0 0 0000000 0 00 00000 00000000000000000 000 0 5 00 5555 0 0 00 0 0 0 0000000 7 8 3 3 3 7 0 0 3 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 0 0 5 0 5555555555 5 5555555555 0 333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 000000 333 3 7777777777 888888 0 3 33 7 7 0 0000 0 00000 0 0 0 0 000000000000 0000000000000 0 0 0 000000 0 0 0 000 0 000000 0 00 0 0 0 00 0 00 0 0 0 0 0 00 0 0 0 0 0 0 0 555555 5 000 55 0 0 000000000000000000000000000000000000000000000 0 55 55 0 55555555 000000000000 0 55 0000 5 55555555 55 00 0 33 33 0 3 3 33 33333 0 222222 5 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333 77777 3 888888 8888 4 000 0000 0 0 0000 0 0000 0 22 88 88 000000000 0 8888 55 8 88 555 9999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 00 0 2 8 22222222222222222222222 0 0000000 222 0 555 0 0 88 0 00 2 0 000 0 0 0 88 8888888 0 0 0 00 000 22 000 8 000 0 0 2 00 00 22 7 000 7 0 0 22222222222222222222222222222222222222222 00 2 0 8 0 2 5555 2 777 0000000000 7 77777 0
consensus : NNNNNNNNCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTNTAGTAAAGGNCATTGTTAACGTAAAACAAAGGCTGATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAATTCATCACAGATTTAGGTA-GATTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAACATAACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGCCGTGGANGCAGTGTTTATTNGAGTATTTTCAGAGACTTNTCTGAGNCTGTACTGAGGTTTCAAGAGAGAAAA-ACNANTTCCGCTCGAAACAGCATCATTTTCTTGTTTTCANTGCTTATCGTGACCACGCGACCTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCNGCGGCGATGTGAGTACTA-GCCGATAACATAAAAACCGGGTTTTGAAAGAAATTGGGGAG-CAATCTACTTTTCCNAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCC---CCCAAATAAGC------CG-AATTTCAGCGCAGTTTTCCCGAATTCGACACACTTTCTTGAGGA-ACGTATGAATCATATA--CTTAG---AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-NTA-TATATGCT-TCGAAATAT--TTAGANTCGGCATCTAAAAGGTACCTAGGTAAGGATGGGAAACTGGAGAGACACACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCCAAAA-TTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATTGAAGTTGCAGCGAAGAGGTCTGAT-CATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGGAA-CCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGATAA-TCTATCAAGCAATT-GTGACCAATGAGCACACGG--GCTGA-TATGGT-GAATAGATGTAGTTACCCTGGCAGTGGNGGTTGCAAACAACACGCATAACATAANGGACCTNNANAGAGCAAACNATCTCAATATTTCTCACCGTNCATGATANTGATACCGACTATACTGNTTAATCCATTTTTAATTTTTCGATTTGNGAAATTAACGATTTTAGGATTTGGACTCGCGTCTCNNCGTGCTACGAGAAGCTNCTACGAAGTTTGAGAAGGAATNNACGATTAAAGAATGA-ATATTT--CGTT-GCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCG--CTACAATAAT---GG-T-GG--TCAATCC-TTANA----TT-AGAATATAAACTGTGA-----CGG-ANAA-----CCC-AA-AACTGT---GCAT--TTAT-TAGANT-ATAC-G---ACAA------TATGAGT--ATC---T-CCGA-TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-C-TTTT---CACCCTGC-GTT----ATTTCGATTTTCAA-TCATTT--CG--TC---------AAAATAGCAA-GCATT--GTGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C----ATATTCT-CG---C---AC-----------ATCACNTA----TGG--TTCT--CT---GAAATCATTTC---------------------AAAGCT-TCA-ATCCAGTNCATGACGCAA---------A-------------TTT-CT-----T-AGGTA-TTC-GA---TATTAA-A-CACGA-AT-GTTTNGAAGA-AAA-CTGAAT-G-CT-TT-CATT-----CACAG-TAT-GGA-GCATAT--TCT---GTTTCT--TA---AGAGGAC---TG-TG-CCTTCCC-GTGCG--AC--ATGT-CT-TGG-GTAAAGAAAACTCTCA-TTT-TGGTT-GTT------TTTAT--AACAAA-G---TATNAAATT-GACCN-CTCGCTTCGA-CTTACCCAATTTATCC--GGAAACC---CTGCGTT---ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( gi|1 ) : CCCGTTCTCCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGAC-AGGCTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATT-T--ACGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATA-------AAAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----CCATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACACAAATCCCGCTCG--ACAACA----------GT---------------TGACT--ACGAATTTTCTC---TTTT--------------------ATAGCAAC-GCGATGTGGGTACCAGGCCGATAAC--AAAA--CAAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCA-TG--GTTT--C-GAATTCAACACAACTCCT--AGGATACATA-GA--CA-ATA--CTTAG---AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTACATAGGTAAGGATGGGAAACTCGA-----ACACATA-ACACGAACATG-AATATGC------------ATCTAGCAAATAAACATTTGCCAAT----GTACA----ATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGAG------CTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACAA--TCATTTAAAAAT--TCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATTTGTGACCAATGAGCACACGGCGGCTGACTATGGTTGAAGAAATTTAGTTACCCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAACG----------TTCTCACC-TCTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA--TTTCG-TTT-TGA----AACGA-TT--GGA-T--GACT-GCGTTTCCTCTT--TACGAGAAGCTCCTACGAAGAATGAGAAGGAATGAACGATTAAAGAATGACATATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCA--CTACAAT---------------TCAATCC-TTATA----TT-AGA-TATAAACTGTGA-----CGG-AGAA-----CCCCAA-AACTGT---GCAT--T-AT-TAGATTGATAT-AT--ACAA------TATGAG---ATC---T-CTGA-TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT----CACCCTGC-GTT----ATTTCGATTT-CAA-TCATTT--CG--TC---------AAAATAGCAA-GCAT---ATAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C----AT-TTCT-TG---C---AC-----------ATCATTTA----TGG--TTCT--CT---AAAATC-CTTC---------------------AAGACT-CCA-ATTCAGTTCATGACGCAA---------A-------------TTT-CT-----T-AGGTA-CTC-GA---TATTAA-A-CACGA-AT-GTTTTAAAGA-AC--CTGAAT-G-CT-TT-CAAT-----CACAG-TAT-GGA-GCATAT--TCT---GTTTCT-CTA---AGAGGAC---TG-TG-CCTTCC--GTGCG--AC--ATGT-CT-T-G-GTAAAGAAAACTCTCA-TTT-TG--T-GTT------TTTA---AACAA------TATTAAATT-GACCT-CTTGCTTCGA-CTTACCCAATTTATTA--GGAAACC---CTGC-TT---ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|3 : CCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|5 : ccccccccctccgtgAGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAG-GCATTGT--ATGTAAA-CAAAAGTTGgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : T-T-ATTTAATAAAGGTCATT-TTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|18 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|14 : tatttaatgtatagaatacttcagatctatATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAgtcggaccttatttttgtg
gi|3 : tatTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAACATAACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGCCATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCATTTCC-CTCGAAACAATA----------GTTTTCATTGCTTATCGTGACTACACGACCTTT------TTTT--------------------ATAGCTG--GCGAT-TG---ACTA-GCCGAT-AC--AAAAACCAGGTTTTGAAAGAAATTGGGGAG-CAATCTACTTTTCCTAAgtagaaccttaacttatttttgtgacggaactttttaaagacaataaacaatacatttcat
gi|5 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataAGC----TCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGAT----T---GGTTTCAAGAAAAAA-----AAAT-CCGCTCG--ACAGCATCATTTTCTTGTTTTTAG---------TGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTA-GCTGA-AACATAAAA--CGGGTTTTGAAAG----TGGG
gi|9 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn--TTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCC---CCCAAATAAGC------CG-AATTTCAGCA--GTTTTCC-GAATTTGACACACTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAA-ACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATCTAG
gi|13 : TTCA-TGCAGTTT--CCGAATTCAACAC---------------CGT--------------CTTAG---AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTAta
gi|22 : t--CTTAG---AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATG
gi|15 : tATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTAC----GTAAGGATGGGAAACTGGAGAGACACACATA-ATA
gi|10 : ACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCCAAAA-TTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATTGatcattatgataacaaa
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGAT-CATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGGAAagttaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|6 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactGGATCAAAGTCGCGGAA-CCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGATAA-TCTATCAAGCAATT-GTGACCAATGAGCACACGG--GCTGA-TATGGT-GAATAGATGTAGTTACCCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAACG----------TT-----C-TCTA-GATAGTAAT--------TA-TGATT--TCCATTTTTAAT-TTTCG-TTT-GAA----AACGATTT--GGATT--GACT-GCGTTTCCTC----TACGAGAAGCTGCT-------TTGAGAAGGAATGAACGA-TAAAGAATGA-ATATTT--CGTTC-CGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCG--CTACAAT-----------------AATAC---AGA----TT-AG
gi|2 : ttatctgtagtttgcccaaacacggcagTGGGGGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTATCTCAATATTTCTCACCGTACATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGA-TTTAGGA-TTGAACTCGCGTCTCAACGTGCTACGAGGA
gi|7 : ctgaatatcattcaaacatcaagcaatgtgtatccaatgagtgcgccgagctacatcCGAGAAGCTCCTACGAAGT-TGAGAAGGAATTTACGAT-AAAGAATGA-ATATTT--CGTT-GCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCG--CTACAATAATACAGATTAGAT-TTAATCC-TTATAAATATT-AGAATATAAACTGTGA-----CGG-AAAA-----CCC-AA-AACTA-----CAT--TTAT-TAGAT----------------------ATGAGT--ATC---T-CTGA-TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-C-TTTT---CACCCTGC-GTT----ATTTCGATTTTCAA-TCATTT--CG--TC---------AAAATAGCAA-GCATT--ATGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C----ATATTCT-TGCGAC---AC-----------ATCA-CTA----TGGCTCTCT--CT---GAAATCATTTC---------------------AAaagatatacatactagcgaaaggtattgagatatttatgtatatctgtatgaggacgcacataaaagtgataattgaattattttccgttgcgtgggcacgagttctaatcgcgtgcagactaatatggaagtaaaactcaacaatccatgcgctacaataattacagattagattcaatcccttatatttagagtatatactgtgaagtgacagtagaaaaatacctcaataactgtcatgtatgttatataaaataatacaagaacaaaccaagtatgagtaaatcatatactgaatatactttataatacaccataattaatatacgcaaaagcagtggtgcgcattcttttacacaccctgcagtttatggtctcgatttcaacatttttcgattcggattttagaaaataataaagcattaggtgaacgtaaaagtctaagtgtaaaacattgagtgtatttttcaatatttcttgcgcgatacaatcgaatcttctactattggttctctttcttttttgtatatgatttattaataaagtcttccaatccagtgtgtcgcaatatttttctttatgggtttctctgaaactattaatatcacgatatagtcttgaagacacaactgaattgttattgcaattctagcaagtataggatgcatattctccaggtactaataagtagagtacacgtgctgcctttccagtgcgaccaatgtcttgggtaagaaaactctcatttttggttgtttatccatttattcaacaaataatttataaatttgacctcgcgcttcgacttaccaatttatccggaaactctgcttttgtccagaatctattcagccctattgtggtaacgatggatca
gi|2 : TATTTTCCGTT-GCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCG--CTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTT-ATATAAAATAATAC-AAGAACAAACCAAGTATGAGTAAATCATATACTGAATATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTC-TTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA--CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATAT-TTCT-TG---C---GCGATACAATCGAATCTTCTACTATTGG--TTCT--CT-------TT-CTTTTTTGTATATGATTTATTAATAAAGTCTTCCA-ATCCAGT--GTGTCGCAAT--------A-------------TTT-TTCTTTAT-GGGTTTCTCTGAAACTATTAATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCA-AG-TATAGGATGCATAT--TCTCCAGGTACTAATAAGTAGAGTACACGTGCTG-CCTTTCCAGTGCG--ACCAATGT-CT-T-G-GGTAAGAAAACTCTCATTTT-TGGTT-GTTTATCCATTTATTCAACAAATAATTTATAAATTT-GACCT-CGCGCTTCGA-CTTA-CCAATTTATCC--GGAAACT---CTGC-TTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|4 : ctgaatatcattcaaacatcaagcaatgtgtatccaatgagtgcgccgagctacatctgggggttcaaacaacacgcataacataatggacctcgatagagaaactatctcaatatttctcaccgtacataatattgataccgactatactgtttaatccatttttaatttttcgatttgtgaaattaacgatttaggattgaactcgcgtctcaacgtgctacgaggaaagatatacatactagcgaaaggtattgagatatttatgtatatctgtatgaggacgcacataaaagtgataattgaatACAATA-ATA-CAGATTA-GAT---------------TCAATCC-TTAAA----TT-AGAATATAACCTGTGA-----CGG-GTAA-----CCC-AA-AACTGT---ACTT--TTAC-TAGACT-ATATCGC--ACAA------TATGAGT--ATC---T-CCGA-TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTTCAT-C-TTTT---CACCCTGC-GTT----ATTTCGATTTTCAA-TCATTT--CG--TC---------AAAATAACAA-GCAT----TA--TG---A--TAGA---GTAAGAAATTGAATGTATTTT-C----ATATTCT-TG---CGACAT-----------ATCACA-A----TGG--TTCTTTCT---GAAATCATTTC---------------------AAAGCT-TCA-ATTCAGTGCATGACGCAA---------ACATCAGTGCGAATTTT-CT-----T-AGGTA-TTC-GA---TATTAA-A-CACGA-AT-GTTTGAAA-A-AG--CTGAAT-G-CT-TT-CATT-----CGCAG-TAT-GGA-GCATAT--TCT---GTTTCT--TA---AGAGGAC---TG-TG-CCTTCC--GTGCG--AC--ATGT-CTAA-G-GTAAAGAAAACTCTCA-TTT-TGGTT-GTT------TTT----AACAA------AATTAAATA-GACCG-CTTGCTTCGA-CTTACCCAATTTATCC--GGAAACC---CTGCGTT---ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|16 : ctCTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-C-TTTT---CACCCTGC-GTT----ATTTCGATTT-TAAATCATTT--CG--TC---------AAAATAGCAA-GCAT---c
gi|25 : tatctttgcctttaAACGCAA---CA----TGTCCAT-CTTTT----CGCCCTGC-TTT----ATTTtatg
gi|12 : tTGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT----ATATTCTGCA---C---AC-----------ATCACG-A----TGG--TTCT--TTCTGAAAATT-----------------------------ATT-TCATATCC--TACATGACGCAA---------A-------------
gi|8 : TTC---------------------AAAGCT-TCA-ATTCAGTTCATGACGCAACATCTGCGAA-------------TTTTCT-----TGAGGTG-TTC-GA---TATTAA-A-CACGA-AT-GTT--GAAGA-AAA-CTGAAT-GTCT-TT-CATT-----CACAGATAT-TGA-ACATAT--TCT---GCTTCT--TA---AGAGGACC--TG-TGGCCTTCCC-GTGCG--AC--ATGTTCT-TAG-GTAAAGAAAACTCTCA-TTT-TG--TTGTTCT----TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTACC-AATTTATCATCGGAAACC---CTCG-TT---AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGGcatcagtgcgaattttcttcaaattacgagttttttgaaaa
gi|24 : attAA---------T-------------TTT-CT-----T-AGGTA-TAC-GA---TATTAA-A-CAC---AT-GTCTcacg
gi|11 : cgTTAA-A-CACGA--T-GTTGAAAAAA-AAA-TTGAAT-G-CT-T--CATT-----CACAG-TAT-GGA-GCATATAATCT---GTTTTC-TTA---AGATG-C---TG-TG-TCTT-C--GTGCGGAGC--ATGT-CT-TGG-GCAAAGAAAA--CTCA-TTTATGGTT-GTT------TTGAT--AACAA----------AA----GACCG-CTCGCTTCGA-C-AACCCAATTT----------------------------------CTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|17 : TTTGAAGA-AA--CTGAAT-G-CT-TT-CATT-----CACTG-TAT-GGA-GCATAT--TCT---GTTTCT--TA---GGAGGAC---TG-TG-CCTTCC--ATGCG--AC--ATGT-CT-TGG-GTAAAGAAAACTCT
gi|23 : C--ATGT-CT-T-ATGCAAAGAAAACCCTCA-TTT-TGGTT-GTT------TT
gi|20 : GCTTCGA-CTTACCAGGTTTCTCC--GGAAACC---CTGCGTT---ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGGgac
gi|21 : cTTTATTT--GGAA-CCGGTCTGCGTT---ACT-GAATCATCTCA-CC-----ATGGTCACGATG
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|19 ): TCCGCTCGACAACATGTTTTCTTGTTTTAGTGACTAGGATTTTTTTTTTTTTACACCAACGGCGATATGGTACTAGCCGATTACAAAATCCA
Alignments
lowQualScore : 1111111111111111111111111111111111111111111111111111111111 1111111111111111
lowQualScore : 333 333 2 2 1 11 2 22 22 1 1 1 1 2 11 2 4444444444444444444444444444444444444444444444 2 2 333 1 222 22 33333 22 3333333 1 1 1111111 1 111111 2 222222222 444444 222222 222 222 5555555555555555555555555555555555555555555555555555555555 11 22 1 11 1 1111 222 2 11 2 4444 2 1 1 333333333 11 1 1 2 3333 1 6666666666666666666 99999999999999999999999999999999 11 111 1 111111 1 1 11 1 22222 1 1 444444444444 2222 2222 2 222222 1 1 2 11 1 1 11 11 22222222222222 111 222222 333333333333333333 1 55555555555555 888888888888888888888888888888888888888888888 33 1 44444444 3333333333 2 222222 11 22222 1 111 1111111 22222 444444444444 222222 2222 1 111 11 1 1 1 11 22222 1 1 3333333333333333 1 3333 33333333 2222 1 1 22222 1 1 88888888888888888888888 111 11111 1 222222 11 1 111 1111 111 1111 11 11 333333333 1111 111 111 1111 44444444444444444444444 2222222 11 333333333333333333 11111 11 66666666666666666666666 1111111 111 111 111111 1 111 11 111 111 1 111111111 333 3333333 111 11111
lowQualScore : 555 555 0 0 3 5 88 0 77 2 77 5 3 5 5 5 0 3 88 66 0 6666666666666666666666666666666666666666666666 0 2 0 555 5 222 1 7 00 66666 7 88 3 77 2 3 2222222 5 3 0 4 1 1 0 5 6666666 0 888888 0 1 3 7 1 222222222 1 11 444444 6 0 111111 2 888 666 3333333333333333333333333333333333333333333333333333333333 55 2 6 11 0 33 9 3333 111 2 0 88 1 4 0 2222 0 5 5 777777777 88 2 5 5 0 3 3 8888 5 7 1111111111111111111 0 44444444444444444444444444444444 33 3 777 0 777777 0 5 99 8 0 2 33 1 2 5 2 66666 5 5 666666666666 4444 4444 0 4 888888 4 2 5 0 88 6 3 5 88 88 88888888888888 777 000000 777777777777777777 3 6 1 6 0 88888888888888 22 1 77 666666666666666666666666666666666666666666666 1 00 7 7 6 66666666 7 7777777777 3 0 999999 33 55555 0 1 000 8888888 55555 555555555555 111111 1111 0 111 33 0 0 0 33 55555 0 0 0 1111111111111111 0 1 1111 7 66666666 1 1111 0 0 11111 0 3 0 66666666666666666666666 777 88888 2 0 333333 8 11 8 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 4444 0 111 444 5555 88 77777777777777777777777 7777777 11 555555555555555555 0 66666 8 11 0 1 55555555555555555555555 6 8888888 5 111 111 666666 5 1 55 5 88 1 5 6 5 6 6 6 6 6 99 6 6 6 6 99 111 6 55 111 6 111 6 6 7 6 99 77 5 4 6 6 999999999 111 8 6666666 3 99 1 99 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . .............................................. . . . ... . ... . . .. ..... . .. . .. . . ....... . . . . . . . . ....... . ...... . . . . . ......... . .. ...... . . ...... . ... ... .......................................................... .. . . .. . .. . .... ... . . .. . . . .... . . . ......... .. . . . . . . .... . . ................... . ................................ .. . ... . ...... . . .. . . . .. . . . . ..... . . ............ .... .... . . ...... . . . . .. . . . .. .. .............. ... ...... .................. . . . . . .............. .. . .. ............................................. . .. . . . ........ . .......... . . ...... .. ..... . . ... ....... ..... ............ ...... .... . ... .. . . . .. ..... . . . ................ . . .... . ........ . .... . . ..... . . . ....................... ... ..... . . ...... . .. . ... .... . ... . .... . . . .. .. ......... . .... . ... ... .... .. ....................... ....... .. .................. . ..... . .. . . ....................... . ....... . ... ... ...... . . .. . .. . . . . . . . . . .. . . . . .. ... . .. ... . ... . . . . .. .. . . . . ......... ... . ....... . .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 000 000 0 0 0 5 00 0 55 5 55 5 0 5 0 0 0 0 00 55 0 0000000000000000000000000000000000000000000000 0 5 0 000 5 000 0 3 77 00000 3 00 0 55 5 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 0 3 3 0 777777777 0 77 000000 7 7 333333 5 555 333 7777777777777777777777777777777777777777777777777777777777 55 5 5 88 0 00 2 0000 555 5 0 00 0 0 0 5555 0 0 0 555555555 55 5 5 5 0 0 0 0000 0 3 7777777777777777777 7 88888888888888888888888888888888 88 2 555 0 555555 0 6 00 0 0 0 88 0 5 0 5 00000 5 0 000000000000 5555 5555 0 0 000000 0 3 0 0 33 7 3 5 00 55 00000000000000 777 777777 333333333333333333 3 7 0 7 7 33333333333333 00 0 33 000000000000000000000000000000000000000000000 0 77 3 3 0 33333333 3 3333333333 3 7 333333 88 00000 0 0 222 2222222 00000 888888888888 555555 2222 0 000 88 0 0 0 88 00000 0 0 8 0000000000000000 0 0 2222 0 22222222 0 2222 0 0 00000 0 2 0 88888888888888888888888 000 55555 0 0 000000 0 00 0 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 6666 8 888 000 4444 88 22222222222222222222222 4444444 00 222222222222222222 8 77777 0 88 8 0 33333333333333333333333 7 3333333 7 777 777 444444 7 4 99 7 77 7 7 7 7 7 7 7 7 7 22 7 7 7 7 22 777 7 88 777 7 777 7 7 7 7 22 99 7 0 7 7 333333333 444 0 6666666 8 00 0 00 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATT-TTAACGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-AC-A-TTCCGCTCGA-AACAGCAT-GTTTTCTTGTTTTCA------A--GTGACTA-GCGACCTTT-----ATTTTT-TTTTT-------TTTA--ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCCGAATTTCA-CGCA--------GTTT--CCGAATTCGACACA-CTCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTAC-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGGAA-CCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGACAA-TCTATCAAGCAAT-T-GTGACCAATGAGCGCACGG--GCCGA-TATGGT-GAA-AGAT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAACG-TCTC--TA-TTCTCACC-T-CATNATAGTAAT------TATA-TGATT--TCCATTTTTAATTTTTCG-TTTG-GAA---AACGATTT--GGATT--GACT-GCGTTTCCTC-T-CTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGGAAT----------GAACG---ATTAAAG----AA-TGA-A-TATTT--CGTT-GCGTGGGCA-GAGGTC-AAT--CGTGAAAA-----ATGGAAGGAAAACTTAACAAT-CAT-GCGCTACAATAATACAGATTAGAT-----TCAAT-CCTTATA----TTAGAATATAAACTGTGACG--------GAAAA----CCC-AA-AACTG---TGCAT-TTAT-TAGANTGATA-C---GCACAA------TATGAGT--ATC-T---CTG-ATATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCA-TCTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCA--TTTCG--TC---------AAAATAGC-AAGCATT--ATGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCT-TG---C---AC-----------ATCACGTA----TGG--TTC--T--C---------TG-AAATCATTT-----CAAAG-CTT-CAATTCAGTNCATGACGCAA---------A-------------TTT-CT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTTCCC-GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AAC-AAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGATAA-CTATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTNTAGTAAAGGNCATTGTTAACGTAAAACAAAGGCTGATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAATTCATCACAGATTTAGGTA-GATTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGANGCAGTGTTTATTNGAGTATTTTCAGAGACTTNTCTGAGNCTGTACTGAGGTTTCAAGAGAGAAAA-ACNANTTCCGCTCGA-AACAGCATCATTTTCTTGTTTTCANTGCTTATCGTGACCACGCGACCTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCNGCGGCGATGTGAGTACTAG-CCGATAACATAAAAACCGGGTTTTGAAAGAAATTGGGGAGCAA-TCTACTTTTCCNAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGCCGAATTTCAGCGCA--------GTTTTCCCGAATTCGACACACTTTCTTGAGGA-ACGTATGAATCATATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-NTA-TATATGCT-TCGAAATAT--TTAGANTCGGCATCTAAAAGGTACCTAGGTAAGGATGGGAAACTGGAGAGACACACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCCAAAA-TTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGGAA-CCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGATAA-TCTATCAAGCAAT-T-GTGACCAATGAGCACACGG--GCTGA-TATGGT-GAATAGATGTAGTTAC-CCTGGCAGTGGNGGTTGCAAACAACACGCATAACATAANGGACCTNNANAGAGCAAACNATCTCAATATTTCTCACCGTNCATGATANTGATACCGACTATACTGNTTAATCCATTTTTAATTTTTCGATTTGNGAAATTAACGATTTTAGGATTTGGACTCGCGTCTCNNCGTGCTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGGAAT----------NNACG---ATTAAAG----AA-TGA-A-TATTT--CGTT-GCGTGGGCA-GAGGTC-AAT--CGTGAAAA-----ATGGAAGGAAAACTTAACAAT-CAT-GCGCTACAATAATG--G--TGG-------TCAAT-CCTTANA----TTAGAATATAAACTGTGACG--------GANAA----CCC-AA-AACTG---TGCAT-TTAT-TAGANT-ATA-C---G-ACAA------TATGAGT--ATC-T---CCG-ATATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCA-TCTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCA--TTTCG--TC---------AAAATAGC-AAGCATT--GTGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCT-CG---C---AC-----------ATCACNTA----TGG--TTC--T--C---------TG-AAATCATTT-----CAAAG-CTT-CAATCCAGTNCATGACGCAA---------A-------------TTT-CT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTNGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--AC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTTCCC-GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AAC-AAA----GTATNAAA-TTGACC-NCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATT--TA-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACACAAATCCCGCTCGACAACAG
gi|1 : cccgttctATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGC-AAAT---AACGCAAATCCATGGTTT---CGAATTCAACACAACTCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTACATAGGTAAGGATGGGAAACTCGA-----ACACATA-ACACGAACATG-AATATGC------------ATCTAGCAAATAAACATTTGCCAAT----GTACA----ATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGAG------CTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACAA--TCATTTAAAAAT--TCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAAT-TTGTGACCAATGAGCACACGGCGGCTGACTATGGTTGAAGAAATTTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAACG----------TTCTCACC-TCTATTATAGTAAT--------TA-TGATT--TCCATTTTTAATTT--CGTTTTGA------AACGATT---GGAT---GACT-GCGTTTCCTCTT--TACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGGAAT----------GAACG---ATTAAAG----AA-TGACA-TATTT--CGTTTGCATGGGCA-GAGGTC-AAT--CGTGAAAA-----ATGGAAGGAAAACTTAACAAT-CATAGCACTACAAT-------------------TCAAT-CCTTATA----TTAGA-TATAAACTGTGACG--------GAGAA----CCCCAA-AACTG---TGCAT-T-AT-TAGATTGATA-T---ATACAA------TATGAG---ATC-T---CTG-ATATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCA-TCTTT----CACCCTGC-GTT----ATTTCGATTT-CAATCA--TTTCG--TC---------AAAATAGC-AAGCAT---ATAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT--TTCT-TG---C---AC-----------ATCATTTA----TGG--TTC--T--C---------TA-AAATC-CTT-----CAAGA-CTC-CAATTCAGTTCATGACGCAA---------A-------------TTT-CT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAA-TG-CT-TT-C-AATC--AC-AG-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC-GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA------TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCAttgactacgaattttctcttttatagcaacgcgatgtgggtaccaggccgataacaaaacaagttttgaaagatggggagaaaatctatttcctaacaaattctttctctttggagggggggggcaaatacgttgaccatttccttcagaaatgaattgcaaaaatcaatttgccccatacaacccccccccccccccaataagcaaataacgcaaatccatggtttcgaattcaacacaactcctaggatacatagacaatacttagaacctggtaatcttccaaacataggaacatacatcattatatatgctttgaaatatttagagtcggcatctagaatgtacataggtaaggatgggaaactcgaacacataacacgaacatgaatatgcatctagcaaataaacatttgccaatgtacaattagaaacaaattagattttatggccaaaaattttgggagagctttaacaaactttgaaatcggatatgaaaagagttttaaattggcattgcagcgaaggggttgatccatgaatatgaccttgagaacaacgcgaatcaaagtcgcggaaacctagctcttcacacaagaactcagtggacaatcatttaaaaattctgaatatcattcaaagttacaagacaaatctatcaaccaatttgtgaccaatgagcacacggcggctgactatggttgaagaaatttagttaccctggcagtggtggttgcaaacaacacacaaagggtgtatagaacaaacgttctcacctctattatagtaattatgatttccatttttaatttcgttttgaaacgattggatgactgcgtttcctctttacgagaagctcctacgaagaatgagaaggaatgaacgattaaagaatgacatatttcgtttgcatgggcagaggtcaatcgtgaaaaatggaaggaaaacttaacaatcatagcactacaattcaatccttatattagatataaactgtgacggagaaccccaaaactgtgcattattagattgatatatacaatatgagatctctgatatcttttcacctttaataagcgcaacatgtccatctttcaccctgcgttatttcgatttcaatcatttcgtcaaaatagcaagcatataaacgcaaatctagtaagaaattgagtgtattttcatttcttgcacatcatttatggttctctaaaatccttcaagactccaattcagttcatgacgcaaatttcttaggtactcgatattaaacacgaatgttttaaagaacctgaatgctttcaatcacagtatggagcatattctgtttctctaagaggactgtgccttccgtgcgacatgtcttggtaaagaaaactctcattttgtgtttttaaacaatattaaattgacctcttgcttcgacttacccaatttattaggaaaccctgcttaccgaatcttttcaccatggtcacgatgggcca
gi|10 : cccgttctccgagggaaatggcgattacacaatgaccatttcttggatttgaactttttcatgtattgatgaagatttattgaaagtctttaagtctacagtgacaggctgattcacatatttggacaaaataggaaaatataaactatttaaggttgaaaccaaaattggacttctaaagtttcttctgattgcgtaggatatatatacccagtattctaaccccaaatcttgtatagtaaagtcatttacgtaaataaaggctgatcaatagtttaaaaaatctgcaatttaaaacatcataaaaactcatcacagatttaggtagtttttgaaaaacattttgtaaacannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagcccatggaagcatgtttatttgagtattttcagacttgtctgagattgcatggtttcaagaaagaaaacacaaatcccgctcgacaacagttgactacgaattttctcttttACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCCAAAA-TTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATTG-AGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGGAA-aggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAA-TG-CT-T--C-ATTC--AC-AG-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C-GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AAC-AAA----A----------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATA-TTCTGCA---C---AC-----------ATCACG-A----TGG--TTCTTT--C---------TGAAAATTATTT-----CA-----T----ATCC--TACATGACGCAA---------A-------------CAT-C--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCA-TGCA--------GTTT--CCGAATTCAACAC---------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTAC----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCA-CCTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCA--TTTCG--TC---------AAAATAGC-AAGCATT--ATGaataatcattatgataacaaa
gi|17 : tatctttgcctttaTTTGAAGA-A-A-CTGAA-TG-CT-TT-C-ATTC--AC-TG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC-ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTCTTGTTTT--------A--GTGACTAGG-------------ATTTTT-TTTTT-------TTTA---CACCAACGGCGATATG-GTACTAG-CCGATTACA-AAA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAATGT-GTATCCAATGAGTGC------GCCG-------------------AGCTACATCTG------GGGGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTATCTCAATATTTCTCACCGTACATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGA-TTTAGGA-TTGAACTCGCGTCTCAACGTGCTACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACATAAAAGTGATAATTGA-ATTATTTTCCGTT-GCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATT--A--CAGATTAGATTCAATCCCTTATAT---TTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTC-AATAACTGTCATGTATGTTATATAAAATAATA-CAAGA-ACAAACCAAGTATGAGTAAATCATATACTGAATATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGA-TTTCAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCT-TG---C---GCGATACAATCGAATCTTCTACTATTGG--TTC--T--CTTTCTTTTTTGTATATGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAAT--------A-------------TTT-TTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTTTCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAAC-AAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCAtcca
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA---------T-------------TTT-CT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCA-TCTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGATAA-CTATTT
gi|3 : ccccccccctccgtgTTTAATAAAGGTCATT-TTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttaTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCATTTCC-CTCGA-AACAATA----------GTTTTCATTGCTTATCGTGACTACACGACCTTT------TTTT--------------------ATAGCT--GGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGCAA-TCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAATACAGATTAGAT-----TCAAT-CCTTAAA----TTAGAATATAACCTGTGACG--------GGTAA----CCC-AA-AACTG---TACTT-TTAC-TAGACT-ATATC---GCACAA------TATGAGT--ATC-T---CCG-ATATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTTCA-TCTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCA--TTTCG--TC---------AAAATAAC-AAGCATT--ATGA---TAGA---------GTAAGAAATTGAATGTATTTT-C--ATA-TTCT-TG---CGACAT-----------ATCACA-A----TGG--TTC--TTTC---------TG-AAATCATTT-----CAAAG-CTT-CAATTCAGTGCATGACGCAA---------ACATCAGTGCGAATTTT-CT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTT-GAA-A-A-AGCTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTTCC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTA----AC-AAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGT--ATGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A-----TCCGCTCGA---CAGCATCATTTTCTTGTTTTTA---------GTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGGAA-CCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGATAA-TCTATCAAGCAAT-T-GTGACCAATGAGCACACGG--GCTGA-TATGGT-GAATAGATGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAACGTTCTC--TA---------------GATAGTAAT------TA---TGATT--TCCATTTTTAA-TTTTCG-TTT--GAA---AACGATTT--GGATT--GACT-GCGTTTCCT----CTACGAG--AAG-----C-TGC----------T-TTGAGA-----AGGAAT----------GAACG---A-TAAAG----AA-TGA-A-TATTT--CGTT-CCGTGAGCA-GAGGAC-AAT--CGTGAAAA-----ATGGAATGAAAACTTGACAAT-CAT-GCGCTACAATAATtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGGAAT----------TTACG---AT-AAAG----AA-TGA-A-TATTT--CGTT-GCATGGACA-GAGGTC-AAT--CGTGAAAA-----ATGGAGGGACAACTTAACAAT-CAT-GCGCTACAATAATACAGATTAGAT-----TTAAT-CCTTATAAATATTAGAATATAAACTGTGACG--------GAAAA----CCC-AA-AACTA-----CAT-TTAT-TAGA-----------------------TATGAGT--ATC-T---CTG-ATATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCA-TCTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCA--TTTCG--TC---------AAAATAGC-AAGCATT--ATGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATA-TTCT-TGCGAC---AC-----------ATCAC-TA----TGGCTCTC--T--C---------TG-AAATCATTT-----CAAacagattag
gi|8 : TTT-----CAAAG-CTT-CAATTCAGTTCATGACGCAACATCTGCGAA-------------TTTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-GTT--GAAGA-A-AACTGAA-TGTCT-TT-C-ATTC--AC-AGATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC-GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAA----GTGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGCCGAATTTCA--GCA--------GTTTT-CCGAATTTGACACACTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATCTAGcacg
Alignments
lowQualScore : 11111111111111111111111111111111111111111111111111111111111111111111
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 22 11 3333333 1 1 1111111 1 111111 1 111111111 3333333 4444444 222 11111111111111111111111111111111111111111111111111111111111111111111 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 555555 2 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 6666666666666666666 1 333333 222 8888888888888888888888888 55555555555 11 1 33333333 1 1 1 11 1 11 22222 1 11 2222222 33333333333333333 11 111 2 2222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 222222222 1 5555555555555555555555 11 111 222 222222 11 111 1111 111 1111 11 11 333333333 111 111 1111 222 55555555555555555 11 3333333333333333 11111 11 777777777777777 1111111 111 111 111111 1 111 11 111 111 2 2222222222222222 444444 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 22 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 6666666 6 1111111 222 88888888888888888888888888888888888888888888888888888888888888888888 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 777777 0 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 9999999999999999999 3 6 7 6 0 888888 333 6 9999999999999999999999999 1 66666666666 88 7 7 3 22222222 7 3 7 3 3 88 2 33 55555 0 1 33 4444444 55555555555555555 33 777 2 1111 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 555555555 0 8888888888888888888888 0 11 444 8 222 0 333333 8 11 0 9 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 88 8 888 8 8 77777777777777777 11 5555555555555555 0 66666 8 11 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 5 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 6 6 99 77 5 4 6 6 4444444444444444 0 111111 44 99 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. .. . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ....... . ....... ... .................................................................... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . ................... . . . . . ...... ... . ......................... . ........... .. . . . ........ . . . . . .. . .. ..... . . .. ....... ................. .. ... . .... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . ......... . ...................... . .. ... . ... . ...... . .. . . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... .. . ... . . ................. .. ................ . ..... . .. . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . . . .. .. . . . . ................ . ...... .. .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 77 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 3333333 7 7777777 555 00000000000000000000000000000000000000000000000000000000000000000000 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 3333333333333333333 3 7 3 7 7 333333 333 7 7777777777777777777777777 0 33333333333 33 3 3 3 77777777 3 3 3 3 3 33 0 88 00000 0 0 22 2222222 88888888888888888 88 555 0 2222 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 888888888 0 2222222222222222222222 8 00 000 0 000 8 000000 0 00 8 8 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 88 0 000 0 0 00000000000000000 00 2222222222222222 8 77777 0 88 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 0 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 0 7 22 99 7 0 7 7 3333333333333333 8 666666 66 00 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTT-ACGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TC-AGTGACTA-GCGACCTTTAT----TTTTT-TTTT--------TTT---ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGGT-GA-AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT------TATA-TGATT--TCCATTTTTAATTTTTCG-TTTG-GAAA---ACGATTT-GGATTGA-CT-GCGTTTC--CTCTCTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---AT-AAAG----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCT-TGCGACAC-AT-CA--CG-------TA----TGG--TTCTTTC---------TG-AAATCATTT-----CAAAG-CTT-CAATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC-GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTAACGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAAGTGACTA-GCGACCTTTAT----TTTTT-TTTT--------TTTA--ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGC------CG-AATTTCACGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGGTGAA-AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT------TATA-TGATT--TCCATTTTTAATTTTTCG-TTTG-GAAA---ACGATTT-GGATTGA-CT-GCGTTTC--CTCTCTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---ATTAAAG----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GCACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCT-TG---CAC-AT-CA--CG-------TA----TGG--TTC--TC---------TG-AAATCATTT-----CAAAG-CTT-CAATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTTCCC-GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT--ACGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT----------------------TGACTA--CGA-----AT----TTTCT-CTTT--------T-----ATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGA-AGAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA--TTTCG-TTTT-G-AA---ACGA-TT-GGA-TGA-CT-GCGTTTC--CTCTTTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TTATA----TT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT--TTCT-TG---CAC-AT-CA--TT-------TA----TGG--TTC--TC---------TA-AAATC-CTT-----CAAGA-CTC-CAATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAA-TG-CT-TT-C-AATC--AC-AG-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC-GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA-----TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAA-TG-CT-T--C-ATTC--AC-AG-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C-GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AACAAA------A--------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATA-TTCTGCA---CAC-AT-CA--CG--------A----TGG--TTCTTTC---------TGAAAATTATTT-----CA-----T----ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAA-TG-CT-TT-C-ATTC--AC-TG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC-ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T--AGTGACTA-G-GA-----------TTTTT-TTTT--------TTTT--ACACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA---------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTAT-CTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAACGTGCTACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACATAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCT-TG---CGCGATACAATCGAATCTTCTACTATTGG--TTC--TCTTTCTTTTTTGTATATGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTTTCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAACAAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC--GTGACTACACGACCTTT-T----TTT---------------------ATAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TTAAA----TT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAAT-AACGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAG------A---GTAAGAAATTGAATGTATTTT-C--ATA-TTCT-TGCGACAT-AT-CA--CA--------A----TGG--TTCTTTC---------TG-AAATCATTT-----CAAAG-CTT-CAATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-G-TTTGAA-A-A-AGCTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC-GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TT--T--AACAAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGT-ATGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATT-------GGTTTCAAGAAAAAAAA-A------TCCGCTCG---ACAGCATCATTTTC-TTGTTT-TT-AGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGGTGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT------TAT---GATT--TCCATTTTTAATTTT-CG-TTTG--AAA---ACGATTT-GGATTGA-CT-GCGTTTC--CTCT--ACGAG--AAG-----C-TGCT-----------TTGAGA-----AGG---A-----ATGA--ACG---AT-AAAG----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---AT-AAAG----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTA-----CAT-TTAT-TAGA----------------------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATA-TTCT-TGCGACAC-AT-CA--C--------TA----TGGCTCTC--TC---------TG-AAATCATTT-----CAA
gi|8 : TTT-----CAAAG-CTT-CAATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAA-TGTCT-TT-C-ATTC--AC-AGATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC-GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg
Alignments
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 1 11 3333333 1 1 1111111 1 111111 1 111111111 333333 4444444 333333333333333333333333333 88888888888888888888888 3333333 111 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 333333 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 77777777777777777777 1 333333 222 99999999999999999999999999999999999999999999 1 11 2 1 333333333 1 1 1 3333 11 22222 1 111 1111111 33333333333333333 11 11111 22222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 222222222 1 5555555555555555555555 11 111 222 222222 11 111 1111 111 1111 11 11 333333333 111 111 1111 11 4444444444444 22222222 1 11111 11 777777777777777 1111111 111 111 111111 1 111 11 111 111 2222222222222222 444444 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 7 3 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 888888 6 1111111 666666666666666666666666666 88888888888888888888888 2222222 3 777 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 000000 5 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 55555555555555555555 3 6 7 6 0 888888 333 6 88888888888888888888888888888888888888888888 3 88 3 3 111111111 7 3 7 3 3 2222 33 55555 0 1 000 8888888 55555555555555555 33 88888 55555 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 555555555 0 6666666666666666666666 0 11 444 8 222 0 333333 8 11 0 9 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 88 0 11 5 8 5555555555555 8 66666666 6 0 66666 8 11 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 5 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 77 99 99 77 5 4 6 6 4444444444444444 0 111111 44 99 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. . . . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ...... . ....... ........................... ....................... ....... . ... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . .................... . . . . . ...... ... . ............................................ . .. . . ......... . . . . . .... .. ..... . . ... ....... ................. .. ..... ..... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . ......... . ...................... . .. ... . ... . ...... . .. . . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... .. . .. . . ............. . ........ . . ..... . .. . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . .. .. .. .. . . . . ................ . ...... .. .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 3 3 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 000000 7 7777777 555555555555555555555555555 88888888888888888888888 5555555 2 555 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 33333333333333333333 3 7 3 7 7 333333 333 7 00000000000000000000000000000000000000000000 3 33 7 3 000000000 3 3 3 3 3 0000 88 00000 0 0 222 2222222 88888888888888888 88 55555 00000 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 888888888 0 2222222222222222222222 8 00 000 0 000 8 000000 0 00 8 8 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 88 8 00 0 0 0000000000000 0 88888888 0 8 77777 0 88 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 0 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 77 22 22 99 7 0 7 7 3333333333333333 8 666666 66 00 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGACC---AT-----TTTT-TTTTT-------TTTA---TAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGA--AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-G-TCTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTTTCG-TTT--GAAA---ACGATTT-GGATTGA-CT-GCGTTTC--C-CTCTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCTT--GCGACAC-ATC---------AC-TA-TGGTTC-------TTTCTG-AAATCATTT-----CAAAG-CTT-CAATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGACCTTTAT-----TTTT-TTTTT-------TTTA---TAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGA--AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-G-TCTC--TATT-CTCACC-T-C-ATNATAGTAAT------TATA-TGATT--TCCATTTTTAATTTTTCG-TTTG-GAAA---ACGATTT-GGATTGA-CT-GCGTTTC--CTCTCTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATA-TTCTT--GCGACAC-ATC---------ACGTA-TGGTTC-------TTTCTG-AAATCATTT-----CAAAG-CTT-CAATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT-A-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT---------------------TGACTA--CGA-----AT-----TTTC-TCTTT-------T--A---TAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGA--AGAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA--TTTCG-TTTT-G-AA---ACGA-TT-GGA-TGA-CT-GCGTTTC--CTCTTTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG-----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TTATA----TT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT--TTCTT--G---CAC-ATC---------ATTTA-TGGTTC---------TCTA-AAATC-CTT-----CAAGA-CTC-CAATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAA-TG-CT-TT-C-AATC--AC-AG-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA-----TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAA-TG-CT-T--C-ATTC--AC-AG-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C--GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AACAAA------A--------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATA-TTC-T--GC-ACAC-ATC---------ACG-A-TGGTTC-------TTTCTGAAAATTATTT-----CA-----T----ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAA-TG-CT-TT-C-ATTC--AC-TG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC--ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T-AGTGACTA-G-GA------T-----TTTT-TTTTT-------TTTA---CACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA----------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTA-TCTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAACGTGCTACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACA-TAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCTTGCGCGATACAATCGAATCTTCTAC-TATTGGTTCTCTTTCTTTTTTGTATATGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTT-TCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAACAAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC-GTGACTACACGACC----------------TTTT-------TTTA---TAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TTAAA----TT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAAT-AACGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAG------A---GTAAGAAATTGAATGTATTTT-C--ATA-TTCTT--GCGACAT-ATC---------ACA-A-TGGTTC-------TTTCTG-AAATCATTT-----CAAAG-CTT-CAATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-G-TTTGAA-A-A-AGCTGAA-TG-CT-TT-C-ATTC--GC-AG-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TT--T--AACAAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGTA-TGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A------TCCGCTCGA---CAGCATCATTTTC-TTGTTT-TTAGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGG-TGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTTTCG-TTT--GAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTCTACGAG--AAG-----C-TGC----------T-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTA-----CAT-TTAT-TAGA----------------------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATA-TTCTT--GCGACAC-ATC---------AC-TA-TGGCTC-------TCTCTG-AAATCATTT-----CAA
gi|8 : TTT-----CAAAG-CTT-CAATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAA-TGTCT-TT-C-ATTC--AC-AGATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC--GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg
Alignments
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 1 11 3333333 1 1 1111111 1 111111 1 111111111 333333 4444444 333333333333333333333333333 77777777777777777777777777777777777777777 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 333333 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 77777777777777777777 1 333333 222 8888888888888888888888888 44444444 1 11 1 11 1 222 1 1 1 4444444 11 22222 1 11 2222222 33333333333333333 11 11111 22222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 222222222 1 5555555555555555555555 11 111 222 222222 11 1 111 1111 111 1111 11 11 333333333 111 111 1111 111 333333333 22222222 11111 777777777777777 1111111 111 111 111111 1 111 11 111 111 2222222222222222 444444 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 7 3 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 888888 6 1111111 666666666666666666666666666 55555555555555555555555555555555555555555 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 000000 5 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 55555555555555555555 3 6 7 6 0 888888 333 6 9999999999999999999999999 1 88888888 3 88 7 3 88 3 333 7 3 7 3 3 1111111 33 55555 0 1 33 4444444 55555555555555555 33 88888 55555 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 555555555 0 6666666666666666666666 0 11 444 8 222 0 333333 8 11 8 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 0 8 0 666 222222222 8 8 1 8 66666666 8 8 0 66666 8 3 8 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 1 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 77 99 99 77 5 4 6 6 4444444444444444 0 111111 44 99 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. . . . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ...... . ....... ........................... ......................................... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . .................... . . . . . ...... ... . ......................... . ........ . .. . . .. . ... . . . . . ....... .. ..... . . .. ....... ................. .. ..... ..... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . ......... . ...................... . .. ... . ... . ...... . .. . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... . . . ... ......... . . . . ........ . . . ..... . . . . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . .. .. .. .. . . . . ................ . ...... .. .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 3 3 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 000000 7 7777777 555555555555555555555555555 55555555555555555555555555555555555555555 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 33333333333333333333 3 7 3 7 7 333333 333 7 7777777777777777777777777 0 33333333 3 33 3 3 33 3 333 3 3 3 3 3 0000000 88 00000 0 0 22 2222222 88888888888888888 88 55555 00000 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 888888888 0 2222222222222222222222 8 00 000 0 000 8 000000 0 00 0 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 8 0 8 000 000000000 0 0 0 0 88888888 0 0 8 77777 0 8 0 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 7 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 77 22 22 99 7 0 7 7 3333333333333333 8 666666 66 00 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC--C--T-CTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC--C-CT-CTACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT-A-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT---------------------TGACTA--CGA--------ATTTTCTCTTTT---------------ATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGAA--GAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTT-CG--TT-TTGAA---ACGA-TT-GGA-TGA-CT-GCGTTTC--CTCT-TTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG-----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TTATA----TT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT-TT-CTTG-----CACA---------TC-ATTTAT-GGTTC---------TCTA-AA-ATC-CTT-----CAAGA-CTCC-AATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAAT-G-CT-TT-CA-ATC--ACA-G-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA-----TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAAT-G-CT-T--CA-TTC--ACA-G-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C--GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AACAAA------A--------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATATT-C-TGC---ACACA---------TC-A-CGAT-GGTTCT-------TTCTGAAA-ATTATTT-----CA-----T----ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAAT-G-CT-TT-CA-TTC--ACT-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC--ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T-AGTGACTA-G-GA---------TTTTTTTTTTTTT-------------ACACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA----------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTAT-CTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAAC-GTGCTACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACA-TAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCTTGCGCGATACAATCGAATCTTCTA-CTATTGGTTCTCTTTCTTTTTTG-TATATGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTT-TCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAACAAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC-GTGACTACACGAC------C-------TTTTTTT-------------ATAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TTAAA----TT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAGA---------GTAAGAAATTGAATGTATTTT-C--ATATT-CTTGCG--ACATA---------TC-A-CAAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTT-GAA-A-A-AGCTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TT--T--AACAAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGTA-TGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A------TCCGCTCGA---CAGCATCATTTTC-TTGTTT-TTAGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGG-TGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC--C--T-CTACGAG--AAG-----C-TGCT-----------TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTA-----CAT-TTAT-TAGA----------------------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGCTCT-------CTCTG-AA-ATCATTT-----CAA
gi|8 : TTT-----CAAAG-CTTC-AATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAAT-GTCT-TT-CA-TTC--ACA-GATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC--GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg
Alignments
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 1 11 3333333 1 1 1111111 1 111111 1 111111111 333333 4444444 333333333333333333333333333 77777777777777777777777777777777777777777 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 333333 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 77777777777777777777 1 333333 222 8888888888888888888888888 44444444 1 11 1 11 1 222 1 1 1 333333333 11 22222 1 11 2222222 33333333333333333 11 11111 22222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 222222222 1 5555555555555555555555 11 111 222 222222 11 111 1111 111 1111 11 11 333333333 111 111 1111 111 333333333 22222222 11111 777777777777777 1111111 111 111 111111 1 111 11 111 111 2222222222222222 444444 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 7 3 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 888888 6 1111111 666666666666666666666666666 55555555555555555555555555555555555555555 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 000000 5 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 55555555555555555555 3 6 7 6 0 888888 333 6 9999999999999999999999999 1 88888888 3 88 7 3 88 3 333 7 3 7 3 3 111111111 33 55555 0 1 33 4444444 55555555555555555 33 88888 55555 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 555555555 0 6666666666666666666666 0 11 444 8 222 0 333333 8 11 0 9 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 0 8 0 666 222222222 8 8 1 8 66666666 8 8 0 66666 8 8 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 5 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 77 99 99 77 5 4 6 6 4444444444444444 0 111111 44 99 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. . . . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ...... . ....... ........................... ......................................... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . .................... . . . . . ...... ... . ......................... . ........ . .. . . .. . ... . . . . . ......... .. ..... . . .. ....... ................. .. ..... ..... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . ......... . ...................... . .. ... . ... . ...... . .. . . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... . . . ... ......... . . . . ........ . . . ..... . . . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . .. .. .. .. . . . . ................ . ...... .. .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 3 3 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 000000 7 7777777 555555555555555555555555555 55555555555555555555555555555555555555555 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 33333333333333333333 3 7 3 7 7 333333 333 7 7777777777777777777777777 0 33333333 3 33 3 3 33 3 333 3 3 3 3 3 000000000 88 00000 0 0 22 2222222 88888888888888888 88 55555 00000 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 888888888 0 2222222222222222222222 8 00 000 0 000 8 000000 0 00 8 8 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 8 0 8 000 000000000 0 0 0 0 88888888 0 0 8 77777 0 0 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 0 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 77 22 22 99 7 0 7 7 3333333333333333 8 666666 66 00 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT-A-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT---------------------TGACTA--CGA--------ATTTTCTCTTTT---------------ATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGAA--GAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTT-CG--TT-TTGAA---ACGA-TT-GGA-TGA-CT-GCGTTTC----CTCTTTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG-----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TTATA----TT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT-TT-CTTG-----CACA---------TC-ATTTAT-GGTTC---------TCTAAA-A-TC-CTT-----CAAGA-CTCC-AATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAAT-G-CT-TT-CA-ATC--ACA-G-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA-----TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAAT-G-CT-T--CA-TTC--ACA-G-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C--GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AACAAA------A--------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATATT-CT-GC---ACACA---------TC-A-CGAT-GGTTCT-------TTCTGAA-AATTATTT-----CA------T---ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAAT-G-CT-TT-CA-TTC--ACT-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC--ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T-AGTGACTA-G-GA---------TTTTTTTTTTTTT-------------ACACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA----------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTAT-CTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAACGTGC--TACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACA-TAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCTTGCGCGATACAATCGAATCTTCTA-CTATTGGTTCTCTTTCTTTTTTGTATA-TGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTT-TCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAACAAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC-GTGACTACACGAC------C-------TTTTTTT-------------ATAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TTAAA----TT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAAT-AACGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAG------A---GTAAGAAATTGAATGTATTTT-C--ATATT-CTTGCG--ACATA---------TC-A-CAAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-G-TTTGAA-A-A-AGCTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TT--T--AACAAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGTA-TGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A------TCCGCTCGA---CAGCATCATTTTC-TTGTTT-TTAGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGG-TGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TGCT-----------TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTA-----CAT-TTAT-TAGA----------------------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGCTCT-------CTCTGAA-A-TCATTT-----CAA
gi|8 : TTT-----CAAAG-CTTC-AATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAAT-GTCT-TT-CA-TTC--ACA-GATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC--GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg
Alignments
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 1 11 3333333 1 1 1111111 1 111111 1 111111111 333333 4444444 333333333333333333333333333 77777777777777777777777777777777777777777 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 333333 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 77777777777777777777 1 333333 222 8888888888888888888888888 44444444 1 11 1 11 1 222 1 1 1 333333333 11 22222 1 11 2222222 33333333333333333 11 11111 22222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 222222222 1 5555555555555555555555 11 111 222 222222 11 111 1111 111 1111 11 11 333333333 111 111 1111 111 333333333 22222222 11111 777777777777777 1111111 111 111 111111 1 111 11 111 111 2222222222222222 444444 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 7 3 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 888888 6 1111111 666666666666666666666666666 55555555555555555555555555555555555555555 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 000000 5 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 55555555555555555555 3 6 7 6 0 888888 333 6 9999999999999999999999999 1 88888888 3 88 7 3 88 3 333 7 3 7 3 3 111111111 33 55555 0 1 33 4444444 55555555555555555 33 88888 55555 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 555555555 0 6666666666666666666666 0 11 444 8 222 0 333333 8 11 0 9 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 0 8 0 666 222222222 8 8 1 8 66666666 8 8 0 66666 8 8 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 5 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 77 99 99 77 5 4 6 6 4444444444444444 0 111111 44 99 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. . . . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ...... . ....... ........................... ......................................... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . .................... . . . . . ...... ... . ......................... . ........ . .. . . .. . ... . . . . . ......... .. ..... . . .. ....... ................. .. ..... ..... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . ......... . ...................... . .. ... . ... . ...... . .. . . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... . . . ... ......... . . . . ........ . . . ..... . . . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . .. .. .. .. . . . . ................ . ...... .. .. . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 3 3 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 000000 7 7777777 555555555555555555555555555 55555555555555555555555555555555555555555 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 33333333333333333333 3 7 3 7 7 333333 333 7 7777777777777777777777777 0 33333333 3 33 3 3 33 3 333 3 3 3 3 3 000000000 88 00000 0 0 22 2222222 88888888888888888 88 55555 00000 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 888888888 0 2222222222222222222222 8 00 000 0 000 8 000000 0 00 8 8 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 8 0 8 000 000000000 0 0 0 0 88888888 0 0 8 77777 0 0 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 0 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 77 22 22 99 7 0 7 7 3333333333333333 8 666666 66 00 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT-A-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT---------------------TGACTA--CGA--------ATTTTCTCTTTT---------------ATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGAA--GAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTT-CG--TT-TTGAA---ACGA-TT-GGA-TGA-CT-GCGTTTC----CTCTTTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG-----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TTATA----TT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT-TT-CTTG-----CACA---------TC-ATTTAT-GGTTC---------TCTAAA-A-TC-CTT-----CAAGA-CTCC-AATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAAT-G-CT-TT-CA-ATC--ACA-G-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG--TGT--T------TTTA---AAC-AA-----TATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAAT-G-CT-T--CA-TTC--ACA-G-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C--GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATGGTTGT--T------TTGAT--AACAAA------A--------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATATT-CT-GC---ACACA---------TC-A-CGAT-GGTTCT-------TTCTGAA-AATTATTT-----CA------T---ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAAT-G-CT-TT-CA-TTC--ACT-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC--ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T-AGTGACTA-G-GA---------TTTTTTTTTTTTT-------------ACACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA----------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTAT-CTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAACGTGC--TACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACA-TAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTTATA----TTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCTTGCGCGATACAATCGAATCTTCTA-CTATTGGTTCTCTTTCTTTTTTGTATA-TGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTT-TCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TGGTTGT--TTATCCATTTATTCAACAAATAATTTATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TGGTTGT--T------TT
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC-GTGACTACACGAC------C-------TTTTTTT-------------ATAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TTAAA----TT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAAT-AACGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAG------A---GTAAGAAATTGAATGTATTTT-C--ATATT-CTTGCG--ACATA---------TC-A-CAAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-G-TTTGAA-A-A-AGCTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TT--T--AACAAA------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGTA-TGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A------TCCGCTCGA---CAGCATCATTTTC-TTGTTT-TTAGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGG-TGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TGCT-----------TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTA-----CAT-TTAT-TAGA----------------------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGCTCT-------CTCTGAA-A-TCATTT-----CAA
gi|8 : TTT-----CAAAG-CTTC-AATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAAT-GTCT-TT-CA-TTC--ACA-GATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC--GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-T-GTTGTTCT------TTTA---AACAAAAG---TGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg
blockSeqs : . . . . A A TG . . G . T T A G G . A GA TG . . G . . T ATA A GT T A A A A . C A GTTCTGA C T A A T A C C GACAATA A AGAGC G A TATTTTCAG T TACTGA G ACCA AACAATAGTTTTCATTGCTTATC GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAG A G A G . AAC C T C AAT C CT T . . . G C CGGAAGATT TA C T A . A A A . . T C T C ACTTTCTTGAGGAACATATGAATCATATAGT AT A GGC G ACTTCT A A TT A A GC G T T G GAG TGT G GATCTTAGCATG AATT ATTA . A GGGGGT T G C . . C . A AC AT GTATACAAGAT TG ACG TATGGTGAATAGATG A C T G TAACAT ACC C TATCTCAATATTTCTCACCGTAC A ACCGACTA C AA T T AT G TTA T A T A C AACGTGC GA ATATA A A AG AGGTATT TATTTATGTATATCTGT GG CACA GTGAT T . T TC . C T CG CTAAT C . T C AATA T A TGACAGTA A ATAC T TCATGTATG A ATAATACAAGAACAAACCAAG AA ATA A CTT ATAATA A AA A AAG GTGG T ACA A TATG TT AT GGATTTTAG A GG AAG AGT TCA T GCG ATCGAATCT T . G T TCTTTCTT T A ATTAA T C A ACATCAGTGCGAAT CTTTAT A TCT AAC TTCTTC T T TA A T A C C A T T A G A TAG A A A T AA CCA T AA AGT C ACG C G CC CA GA CA T G T A TTATCCATTTATTC TAATTT TA AT T TT T C AT A GGT T TGTCCA G CTATT T
blockSeqs : . G T . . A C T . T A A . C ACAT . . . . A . . A CAGCATCATTTTCTTGTTTTTA AGGATTTTTTTTTTTTT A G G G . TT C A C . C . C CGT . A . . ATA . A A . . . G . . . . . . . T . . . . . . . . . GTTCTCTA G . . . T . . . . T . T . . CTC . . . G A GTT AGGA . A . . . . . . . . . . . . . . . . A . T . . TACTT . CTATATCGCACAA . . . A . . . A . . . . . . . . . . . A . AT . G . . . T . T . . . . . G CATCTGCGAAT TG A . . . . T G . T A . . A . . . . . A . . . . . . . . . . . . . C . . . . G . . TCTTTTA AGT TT T A G . C . A . G ACA . . A
blockSeqs : G . . A G T . . CAACATGTTTTCTTGTTTTA ACACGACCTTTTTTT . G . A . T T . C . A . . AT . C T . . . C . . . . C . TT AGGA . A . . . . . . . . . . . . . . . . A . A . . CAT . . . . . . . . . A . . . . . . . . . . . A . C . G . . . A . T . . . . . G TA T G . . . . . A . T G . . G . . . . . A . . . . . . . . . . . . . T . . . . G . . TTTGAT . TG A T T . C . A . G ACT . . A
blockSeqs : . . A . . . . . . . . . . . . . . . . . . . . . . . C . . . . . T . T . . . . . T A T . . . . . . A . T G . . A . . . . . G . . . . . . . . . . . . . C . . . . A . . TTTT . . . . G . . . A . G ACC . .
blockSeqs : . . . . . . . . . T . . . . . . . A . . G . . . . . . . . A . . . . . . . . . . . . . . . . . . A . . . . . . . G AAC . .
blockSeqs : . . . . . . . . . . A . . . . . . .
blockSeqCons : G** T******* ** TTTT************ G*****
originalCons : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGT--T------TTTAT--AACAAA-----TATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
finalCons : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGAA--GA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-GT-CTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TTATA----TT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTGAA-A-TCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TGGTTGTTTTT------------AACAAAG-----ATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Alignments
lowQualScore : 222 222 1 1 1 11 1 11 11 1 1 1 1 1 11 1 1 1 222 1 222 11 1 11 3333333 1 1 1111111 1 111111 1 111111111 333333 4444444 333333333333333333333333333 77777777777777777777777777777777777777777 22 1 2222 222 11 11 1 2222 1 1 1 333333333 11 1 1 1 2222 333333 1 1 999999999999999999999999999999999 11 111 1 111111 1 1 11 1 22 222 111 1 444444444444 2222 2222 1 222222 1 1 11 1 1 11 11 222222222222 111 22222 77777777777777777777 1 333333 222 8888888888888888888888888 44444444 1 11 1 11 1 222 1 1 1 333333333 11 22222 1 111 1111111 33333333333333333 11 11111 22222 1 1 1 11 1 1 1 11 22222 1 1 1 2222 1 33333333 3333 1 22222222 1 44444444444444444444444 11 111 222 222222 11 111 1111 111 1111 11 11 333333333 111 111 1111 111 333333333 22222222 11111 777777777777777 1111111 111 111 111111 1 111 11 111 111 2222222222 555555555555555 111 11111
lowQualScore : 000 000 5 5 1 5 88 5 88 1 88 5 1 5 5 5 5 1 88 22 5 5 1 5 111 5 222 7 44 7 3 7 7 1 88 1 1 2222222 5 3 0 1 1 1 0 5 6666666 0 888888 0 3 7 999999999 1 888888 6 1111111 666666666666666666666666666 55555555555555555555555555555555555555555 3 2 6 11 0 2222 6 9 2 111 66 88 1 5 3333 5 5 5 777777777 88 1 5 5 5 1 1 1111 000000 5 7 6 3 6 0 777777777777777777777777777777777 33 3 777 0 777777 0 5 99 8 0 33 0 1 0 00 1 000 222 5 666666666666 4444 4444 5 1 888888 1 6 5 5 88 6 3 5 88 88 777777777777 777 0 22222 0 55555555555555555555 3 6 7 6 0 888888 333 6 9999999999999999999999999 1 88888888 3 88 7 3 88 3 333 7 3 7 3 3 111111111 33 55555 0 1 000 8888888 55555555555555555 33 88888 55555 0 0 0 33 0 0 0 33 55555 0 0 0 8 0 1111 0 3 66666666 1 1111 0 3 00000000 0 77777777777777777777777 0 11 444 8 222 0 333333 8 11 0 9 111 4444 6 111 6 4444 0 0 0 11 11 222222222 8 0 99 0 111 444 5555 0 8 0 666 222222222 8 8 1 8 66666666 8 8 0 66666 8 3 8 0 1 222222222222222 8888888 5 111 111 666666 5 1 55 5 1 1 5 6 5 6 6 6 6 6 999 6 6 6 6 99 111 6 55 111 6 111 6 6 77 99 99 77 5 4 6 6 99 9999999999 99 111111111111111 1 88 6 6 77 1 000 0 4 888888 5 44444 1
lowQualScore : ... ... . . . . .. . .. . .. . . . . . . . .. .. . . . . ... . ... . .. . . . . . .. . . ....... . . . . . . . . ....... . ...... . . . ......... . ...... . ....... ........................... ......................................... . . . .. . .... . . . ... .. .. . . .... . . . ......... .. . . . . . . .... ...... . . . . . . ................................. .. . ... . ...... . . .. . . .. . . . .. . ... ... . ............ .... .... . . ...... . . . . .. . . . .. .. ............ ... . ..... . .................... . . . . . ...... ... . ......................... . ........ . .. . . .. . ... . . . . . ......... .. ..... . . ... ....... ................. .. ..... ..... . . . .. . . . .. ..... . . . . . .... . . ........ . .... . . ........ . ....................... . .. ... . ... . ...... . .. . . ... .... . ... . .... . . . .. .. ......... . . .. . ... ... .... . . . ... ......... . . . . ........ . . . ..... . . . . . ............... ....... . ... ... ...... . . .. . . . . . . . . . . . ... . . . . .. ... . .. ... . ... . . .. .. .. .. . . . . .. .......... .. ............... . .. . . .. . ... . . ...... . ..... .
lowQualScore : 555 555 0 5 0 5 00 5 00 0 55 5 0 5 0 0 5 0 00 00 5 5 0 0 000 5 000 3 00 3 3 3 3 0 00 0 0 0000000 0 2 0 0 0 2 0 2 7777777 7 777777 7 3 3 000000000 0 000000 7 7777777 555555555555555555555555555 55555555555555555555555555555555555555555 2 5 5 55 0 0000 5 8 5 555 55 00 0 0 5555 5 0 0 555555555 55 0 5 5 5 0 0 0000 555555 0 3 7 3 7 7 111111111111111111111111111111111 88 2 555 0 555555 0 6 44 0 0 88 2 0 0 77 0 555 888 0 000000000000 5555 5555 5 0 000000 0 7 0 0 33 7 3 5 00 55 777777777777 777 7 33333 7 33333333333333333333 3 7 3 7 7 333333 333 7 7777777777777777777777777 0 33333333 3 33 3 3 33 3 333 3 3 3 3 3 000000000 88 00000 0 0 222 2222222 88888888888888888 88 55555 00000 0 0 0 88 0 0 0 88 00000 0 0 8 0 0 2222 0 2 22222222 2 2222 0 2 22222222 0 22222222222222222222222 8 00 000 0 000 8 000000 0 00 8 8 777 2222 7 777 7 2222 8 8 8 00 00 000000000 0 8 22 8 888 000 4444 8 0 8 000 000000000 0 0 0 0 88888888 0 0 8 77777 0 8 0 8 0 000000000000000 3333333 7 777 777 444444 7 4 99 7 7 7 7 7 7 7 7 7 7 7 888 7 7 7 7 22 777 7 88 777 7 777 7 7 77 22 22 99 7 0 7 7 22 2222222222 22 444444444444444 0 66 7 7 99 4 000 7 3 333333 7 33333 2
consensus : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGA--AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-G-TCTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TT----ATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TG--GTTGTT----------TT--TAACAAA-----N--ATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
Reference ( family-2159 ) : NNNNNNNNCCGAGGGAAATGGCGATTACACAATGACNATTATCTTGGATTTTGGAACTCTTTCATGTATTGANGAAGATTTATTGAATAGTCTTTAAGTCTACAGTNACAGGACTGATTCGACGATATTTGGANAAAATGAAGGAAANNATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATANCCAGTATTCTAATCCCCAAATCTATAGTATAGTAAAGGTCATTTTA-CGTAAAATAAAGGCTGATNAATAGTTTAAAAANTCTGCAATTTGAAACATNATAAGTTCTGAAAACTCATCACAGATTTAGGTA-GNTTNTAAAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAGCAGAGC-CGTGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTNTCTGAGATTGCAC---GGTTTCAAGAAAGAAAA-A-CA--TTCCGCTCGA-AACAGCAT-GTTTTC-TTGTTT-TCAGTGACTA-GCGAC------CATTTTTTTTTTTTT-------------ATAGCAACGGCGATGTGGGTACTAG-CCGATAACACAAAAACCAGGTTTTGAAAGAAATTGGGGAGNAAATCTACTTTTCCTAACNAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGGCCATCGTCCTTCGGCAAATCGGAAGATTGATAATTGCNAAAATCAATTTTGCCACCATANAACNCCCCCCCCCNCCCAATAAGCAAATAACGCAATTTCATGCAG-TTTCCGAATTCGACACA-C-TCCT--AGGA-ACGTA-GA--CA-ATA--CTTAG--AAACCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAANGTA-C-TAGGTAAGGATGGGAAACTNGAGAGACACACATGTACACGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTACATTAAATTAGGAACAAATTAGATTTTATGGCCAAAAATTNTGGGAGAGGGGGTGCTTTGACAAACTTTGAANTCGGATATGAAAAGAGTTTTAAATTGGAGTTGCAGCGAAGGGGTCTGATCCATGAATATGACCTTGAGAACA--GCGGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGT-TACAAGAC-AATCTATCAAGCAA-T-TGTGACCAATGAGCGCACG--GGCCGA-TATGG-TGA--AGA---T-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACGCA------AAGGG---TGTATAGAACAAAC-G-TCTC--TATT-CTCACC-T-C-ATNATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TNCTA-CGAA--GT-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCGTGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTCAATCC-TT----ATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AACTGT---GCAT-TTAT-TAGANTGATA-C--GNACAA------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTNCATGACGCAA-A-------------TTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTTTGAAGA-A-AACTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTTGGGTAAAGAAAACTCTCA-TTT-TG--GTTGTT----------TT--TAACAAA-----G--ATNAAA-TTGACC-TCTCGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGACCA
gi|1 : CCGAGGGAAATGGCGATTACACAATGACCATT-TCTTGGATTT--GAACTTTTTCATGTATTGATGAAGATTTATTGAA-AGTCTTTAAGTCTACAGTGACAGG-CTGATTC-AC-ATATTTGGACAAAAT--AGGAAAATATAAACTATTTAAGGTTGAAACCAAAATTGGACTTCTAAAGTTTCTTCTGATTGCGTAGGATATATATACCCAGTATTCTAA-CCCCAAATCT-T-GTATAGTAAAG-TCATTT-A-CGTAAA-TAAAGGCTGATCAATAGTTTAAAAAATCTGCAATTTAAAACATCATAA-------AAACTCATCACAGATTTAGGTA-GTTTTTGAAAAACATTTTGTA-AACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-NN-NN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGC----C-CATGGAAGCA-TGTTTATTTGAGTATTTTC--AGACTTGTCTGAGATTGCAT---GGTTTCAAGAAAGAAAACA-CAAATCCCGCTCGACAACAGT---------------------TGACTA--CGA--------ATTTTCTCTTTT---------------ATAGCAACG-CGATGTGGGTACCAGGCCGATAACA---AAAC-AAGTTTTGAAAGA---TGGGGAGAAAATCTA--TTTCCTAACAAATTCTTTCTCTTTGGAGGGGGGGGGCAAATACGTTGACCATT-TCCTTCAG-AAAT---------GA--ATTGCAAAAATCAATTT-GCC-CCATACAACCCCCCCCCCCCCCCAATAAGCAAATAACGCAAATCCATG--G-TTTC-GAATTCAACACAAC-TCCT--AGGATACATA-GA--CA-ATA--CTTAG--AA-CCTGGTAA---TCT-TCCAAAC--ATAGG-AACATACATCA-TTA-TATATGCT-TTGAAATAT--TTAGAGTCGGCATCTAGAATGTA-CATAGGTAAGGATGGGAAACTCGA---ACACATA---ACACGAACAT-GAATATGC------------ATCTAGCAAATAAACATTTGCC----AATGTAC----AATTAGAAACAAATTAGATTTTATGGCCAAAAATTTTGGGAGA------GCTTTAACAAACTTTGAAATCGGATATGAAAAGAGTTTTAAATTGGCATTGCAGCGAAGGGGT-TGATCCATGAATATGACCTTGAGAACAACGCGAATCAAAGTCGCGGAAACCTAGC-TCTTCACACAAGAACTCAGTGGACA--ATCATTTAAAA--ATTCTGAATATCATTCAAAGT-TACAAGACAAATCTATCAACCAATT-TGTGACCAATGAGCACACGGCGGCTGACTATGGTTGA--AGAAATT-TAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTATAGAACAAAC-G---------TT-CTCACC-T-CTATTATAGTAAT--------TA-TGATT--TCCATTTTTAA-TTT-CG--TT-TTGAA---ACGA-TT-GGA-TGA-CT-GCGTTTC----CTCTTTACGAG--AAG-----C-TCCTA-CGAA--GA-ATGAGA-----AGG---A-----ATGA--ACG---ATTAAAG-----AAT-GACAT-ATTT--CGTTTGCATGGGCA-GAGGTC-AATCG--TGAAAA-----ATGGAAGGAAAACTTAACAATC-ATAGCACTACA---------------ATTCAATCC-TT----ATATT-AG-ATATAAACTGTGACG--------GAGAAC---CCCAA-AACTGT---GCA--TTAT-TAGATTGATA-T--ATACAA------TATGAG-A--TC---T-CTGA---TATCTTTT------CACC-T--TTAATAAGCGCAA---CA----TGTCCAT-C-TTT---CACCCTGC-GTT----ATTTCGA-TTTCAATCATTT--CG--TC---------AAAATAGCAA-GCA-TA--TAAACGCAAA--TCTA---GTAAGAAATTGAGTGTATTTT-C--AT-TT-CTTG-----CACA---------TC-ATTTAT-GGTTC---------TCTA-AA-ATC-CTT-----CAAGA-CTCC-AATTCAGTTCATGACGCAA-A-------------TTTCT-----T-AGGTACTC---GA---TATT------AA-A-CACGA-AT-GTTTTAAAG--A-ACCTGAAT-G-CT-TT-CA-ATC--ACA-G-TAT-GGA-GCATAT--TCT---G-TTTCTC-TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTT-GGTAAAGAAAACTCTCA-TTT-TG----TGTT----------TT--TAAACAA-----T--ATTAAA-TTGACC-TCTTGCTTCGA-CTTACCCAATTTATT--AGGAAACC---CTGC-TT--ACC-GAATCTTTTCA-CC-----ATGGTCACGATGGGCCA
gi|10 : cccgttctACATGTACATGAACATGGAATGTGCGATCTTAGCATGATCTAGCAAATAAACATTTGCCAATTAATGTATATTAAATTAGGAACAAATTAGATTTTATGGCC-AAAATTATGGGAGAGGGGGTGCTTTGATAAACTTTGAATTCGGATATGAAAAGAGTTTTAAATT-GAGTT
gi|10 : TTGAAGTTGCAGCGAAGAGGTCTGATC-ATGAATATAACCTTGAGAACA--GCGGATCAAAGTCGCGG-AAaggaccttgggcaaatgtatggtatgggaaactttgaagttgcagcgaagaggtctgatcatgaatataaccttgagaacagcggatcaaagtcgcggaa
gi|11 : acatgtacatgaacatggaatgtgcgatcttagcatgatctagcaaataaacatttgccaattaatgtatattaaattaggaacaaattagattttatggccaaaattatgggagagggggtgctttgataaactttgaattcggatatgaaaagagttttaaattgagttaggaccttgggcaaatgtatggtatgggaaactTT------AA-A-CACGA--T-GTTGAAAAAA-A-AATTGAAT-G-CT-T--CA-TTC--ACA-G-TAT-GGA-GCATATAATCT---GTTTTCT--TA---AGATG--C---TG-T-GTCTT--C--GTGCGGAGC--ATG-TCTTGGGCAAAGAAAA--CTCA-TTTATG--GTTGTT----------TTGATAACAAA-----A-----------GACC-GCTCGCTTCGA-C-AACCCAATT---------------------------------TCTTTTCA-CC-----ACGGTCACGTTGGTCC
gi|12 : --TGAACAAAAA--TCTA---ATAAGAAATTGAGTGTAGTTTAT--ATATT-C-TGC---ACACA---------TC-A-CGAT-GGTTCT-------TTCTGAAA-ATTATTT-----CA-----T----ATCC--TACATGACGCAA-A-------------CATC--------AG---TGC---GA----ATTTTCTTCAA-ATTACGA-GT-TTTTTGAAAA-
gi|13 : TTTCATGCAG-TTTCCGAATTCAACAC----------------CGT--------------CTTAG--AAACCTGGTAA---TCT-TCCAA----ATAGGAAACATACATCATTTA-TATATGCT-TTGAGATAT--TTAGAGTCGGCATCTAAAAGGTA-
gi|14 : ATTCATCACAGATTTAGGTA-GATTTTAGAAAATATTTTGTA-AACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAAGACAATAAACAATACATT-TCAT
gi|15 : tatATCCATCA-ATAATATATGCT-TTGAAATAT--TTAGAATCGGCATCTAAAAGGTA-C----GTAAGGATGGGAAACTGGAGAGACACACAT
gi|16 : TA--TC---T-TTGCCTTTA-CTTTT------AAAC-T--TTAATAA-CGCAA---CA----GGTCCAC-CTTTT---CACCCTGC-GTT----ATTTCGATTTTAAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGaataatcattatgataacaaa
gi|17 : TTTGAAGA-A-A-CTGAAT-G-CT-TT-CA-TTC--ACT-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---GGAGGA-C---TG-T-GCCTT-CC--ATGCG--AC--ATG-TCTTGGGTAAAGAAAACTCT
gi|18 : ATTCATCACAGATTTAGGTA-GTTTATAAAAAATATTTTGTA-AACAGTCGGAC-----CTTATTTTTGTG
gi|19 : tatttaatgtatagaatacttcagatctatTCCGCTCGA---CAACAT-GTTTTC-TTGTTT-T-AGTGACTA-G-GA---------TTTTTTTTTTTTT-------------ACACCAACGGCGATAT-GGTACTAG-CCGAT--TACAAAATCCA
gi|2 : CTGAATATCATTCAAA----------------CATCAAGCAA-TGTGTATCCAATGAGTGC------GCCGA----------------------GCTACATCTGG-----G-GGTT-CAAACAACACGCATAACATAATGGACCTCGATAGAG-AAACTA-TCTCAATATTTCTCACCGTAC-ATAATATTGATACCGACTATACTGTTTAATCCATTTTTAATTTTTCGATTTGTGAAATTAACGATTTAGGATTGAACTCGCGTCTCAACGTGC--TACGAGGAAAGATATACATACTAGCGAAAGGTATTGAGATATTTATGTATATCTGTATGAGGACGCACA-TAAAAGTGATAATTGA-ATTATTTTCCG-TTGCGTGGGCACGAGTTCTAATCGCGTGCAGACTAATATGGAAGTAAAACTCAACAATCCAT-GCGCTACAATAATTACAGATTAGATTCAATCCCTT----ATATTTAGAGTATATACTGTGAAGTGACAGTAGAAAAATACCTCAATAACTGTCATGTATGTTATATAAAATAATA-CAAGAACAAACCAAGTATGAGTAAATCATATACTGAA--TATACTTTATAATACACCATAATTAATATACGCAAAAGCAGTGGTGCGCATTCTTTTACACACCCTGCAGTTTATGGTCTCGATTT-CAA-CATTTTTCGATTCGGATTTTAGAAAATAATAAAGCATTAGGTGAACGTAAAAGTCTAAGTGTAAAACATTGAGTGTATTTT-TCAATATTTCTTGCGCGATACAATCGAATCTTCTA-CTATTGGTTCTCTTTCTTTTTTG-TATATGATTTATTAATAAAGTCTTCCAATCCAGTG--TGTCGCAATA-------------TTTTTCTTTAT-GGGT-TTCTCTGAAACTATT------AATATCACGATATAGTCTTGAAGACACAACTGAATTG-TTATTGCAATTCTAGCAAG-TATAGGATGCATAT--TCTCCAG-GTACTAATAAGTAGAGTA-CACGTGCT-GCCTT-TCCAGTGCG--ACCAATG-TCTTGGGT-AAGAAAACTCTCATTTT-TG--GTTGTTTATCCATTTATT--CAACAAATAATTT--ATAAAT-TTGACC-TCGCGCTTCGA-CTTA-CCAATTTATC--CGGAAACT---CTGCTTTTGTCCAGAATCTATTCAGCCCTATTGTGGTAACGATGGATCA
gi|20 : CGCTTCGA-CTTACCAGGTTTCTC--CGGAAACC---CTGCGTT--ACA-GAATCTTTTCA-TC-----ATGGTCACGGTGG
gi|21 : TTTATT--TGGAA-CCGGTCTGCGTT--ACT-GAATCATCTCA-CC-----ATGGTCACGATG
gi|22 : --CTTAG--AAACCTGGTAG---TCT-TCCAAAT--A-GGG-AACATAT-----TTA-TATATGatccgc
gi|23 : tC--ATG-TCTTATGCAAAGAAAACCCTCA-TTT-TG--GTTGTT----------TT--
gi|24 : AA-T-------------TTTCT-----T-AGGTATAC---GA---TATT------AA-A-CAC---AT-GTCTgac
gi|25 : cgAACGCAA---CA----TGTCCAT-CTTTT---CGCCCTGC-TTT----ATTT
gi|3 : tCCGAG---AATGG---TTA-ACA-TAACAATTATCTTGGATTTTGGAACTCTT-CAT--ATTGAGAAAGAT--ATTGAATAGTCTTTAAGTCTACAGTTACAAGACTGATTCGACGAT-TTTGGAAAAAATGAAGGAAATGAT-AACTATTT
gi|3 : ccccccccctccgtgTAATAAAGGTCATTTTAACGTAAAATAAAGGCTAATAAAT--TTTAAAAACTCTGCAATTTGAAACATAATAAGTTCTGAAAGCTCAT-ACAgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|3 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttattTCATGACAGAT--AGGTAAGATTGTTAGAAATATTTTGTACAACAGTAGAACCTTAACTTATTTTTGTGACGGAACTTTTTAAA-AC-AT-AACAATACATTATCATTCAGCAAACAGTGAAAAATCAAAGTTTAAGGAAATCATTGAAACAGAGC-CATGGATACAGTGTTT-TTTGAGTATTTTCAGAGACTTTTTTGAGCCTGTACTGAGGTTTCAA-AGAGAAAA-ACCA--TTTCCCTCGA-AACAATA--GTTTTCATTGCTTATC-GTGACTACACGAC------C-------TTTTTTT-------------ATAGC--TGGCGAT-TG---ACTAG-CCGAT---ACAAAAACCAGGTTTTGAAAGAAATTGGGGAGC-AATCTACTTTTCCTAAatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctatatcatgacagataggtaagattgttagaaatattttgtacaacagtagaaccttaacttatttttgtgacggaactttttaaaacataacaatacattatcattcagcaaacagtgaaaaatcaaagtttaaggaaatcattgaaacagagccatggatacagtgttttttgagtattttcagagacttttttgagcctgtactgaggtttcaaagagaaaaaccatttccctcgaaacaatagttttcattgcttatcgtgactacacgacctttttttatagctggcgattgactagccgatacaaaaaccaggttttgaaagaaattggggagcaatctacttttcctaa
gi|4 : ccccccccctccgtgccgagaatggttaacataacaattatcttggattttggaactcttcatattgagaaagatattgaatagtctttaagtctacagttacaagactgattcgacgattttggaaaaaatgaaggaaatgataactatttgtgttatttaataaaggtcattttaacgtaaaataaaggctaataaattttaaaaactctgcaatttgaaacataataagttctgaaagctcatacaatcatcacttaatggatattcaaatatgtaacgtatagaatactaatctataCTACAATAAT-ACAGATTAGATTCAATCC-TT----AAATT-AGAATATAACCTGTGACG--------GGTAA----CCCAA-AACTGT---ACTT-TTAC-TAGACT-ATATC--GCACAA------TATGAGTA--TC---T-CCGA---TATCTTTT------CACC-T--TTAATAA-CGCAA---CA----TGTTCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAACAA-GCATTA--TGA---TAGA---------GTAAGAAATTGAATGTATTTT-C--ATATT-CTTGCG--ACATA---------TC-A-CAAT-GGTTCT-------TTCTG-AA-ATCATTT-----CAAAG-CTTC-AATTCAGTGCATGACGCAA-ACATCAGTGCGAATTTTCT-----T-AGGTATTC---GA---TATT------AA-A-CACGA-AT-GTTT-GAA-A-A-AGCTGAAT-G-CT-TT-CA-TTC--GCA-G-TAT-GGA-GCATAT--TCT---G-TTTCT--TA---AGAGGA-C---TG-T-GCCTT-CC--GTGCG--AC--ATG-TCTAAGGTAAAGAAAACTCTCA-TTT-TG--GTTGTT----------TT--TAACAAA--------ATTAAA-TAGACC-GCTTGCTTCGA-CTTACCCAATTTATC--CGGAAACC---CTGCGTT--ACC-GAATCTTTTCA-CC-----ATGGACACGATGGACCA
gi|5 : AGGATATAT-TAGC-AATAT---AATCCCCAAATCTATAGTAT-GTAAAGG-CATTGTA-TGT-AAACAAAAGTTGc
gi|5 : AGCTCGTGGAAGCA-TGTTTATTGGAG----------GACTTATCTGAGATTG-------GTTTCAAGAAAAAAAA-A------TCCGCTCGA---CAGCATCATTTTC-TTGTTT-TTAGTGACC--GCGATTTTTATCATATTTTTATTTTTGAGTAAATTTAAGATAGCAACGGCAATGT-AGTACTAG-CTGA-AACATAAAA--CGGGTTTTGAAAGnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnagctcgtggaagcatgtttattggaggacttatctgagattggtttcaagaaaaaaaaatccgctcgacagcatcattttcttgtttttagtgaccgcgatttttatcatatttttatttttgagtaaatttaagatagcaacggcaatgtagtactagctgaaacataaaacgggttttgaaagtggg
gi|6 : aggatatattagcaatataatccccaaatctatagtatgtaaaggcattgtatgtaaacaaaagttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCA--G-GGATCAAAGTCGCGG-AACCTAGCATCTTCACACAAGAACTCAGTGGACAACATCATTTAAAGATATTCTGAATATCATTCAAAGTATACAAGAT-AATCTATCAAGCAA-T-TGTGACCAATGAGCACACG--GGCTGA-TATGG-TGAATAGA---TGTAGTTAC-CCTGGCAGTGGTGGTTGCAAACAACACACA------AAGGG---TGTAGAGAACAAAC-GTTCTC--TA----------------GATAGTAAT--------TA-TGATT--TCCATTTTTAATTTT-CG--TT-TGAAA---ACGATTT-GGATTGA-CT-GCGTTTC----CTC--TACGAG--AAG-----C-TGC----------T-TTGAGA-----AGG---A-----ATGA--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTCCGTGAGCA-GAGGAC-AATCG--TGAAAA-----ATGGAATGAAAACTTGACAATC-AT-GCGCTACAATAAT-ACAGATTAGtggg
gi|7 : ttatctgtagtttgcccaaacacggCGAG--AAG-----C-TCCTA-CGAA--GT-T-GAGA-----AGG---A-----ATTT--ACG---A-TAAAG-----AAT-GA-AT-ATTT--CG-TTGCATGGACA-GAGGTC-AATCG--TGAAAA-----ATGGAGGGACAACTTAACAATC-AT-GCGCTACAATAAT-ACAGATTAGATTTAATCC-TTATAAATATT-AGAATATAAACTGTGACG--------GAAAA----CCCAA-AAC--T---ACAT-TTAT-TAG----------------A------TATGAGTA--TC---T-CTGA---TATCTTTT------CACC-T--TTAAT-AACGCAA---CA----TGTCCAT-CTTTT---CACCCTGC-GTT----ATTTCGATTTTCAATCATTT--CG--TC---------AAAATAGCAA-GCATTA--TGAACGTAAA--TCTA---GCAAGAAATTGAGTGTATTTT-C--ATATT-CTTGCG--ACACA---------TC-A-CTAT-GGCTCT-------CTCTG-AA-ATCATTT-----CAA
gi|8 : TTT-----CAAAG-CTTC-AATTCAGTTCATGACGCAACATCTGCGAAT----TTTCT-----TGAGGTGTTC---GA---TATT------AA-A-CACGA-AT-G--TTGAAGA-A-AACTGAAT-GTCT-TT-CA-TTC--ACA-GATAT-TGA-ACATAT--TCT---G-CTTCT--TA---AGAGGACC---TG-TGGCCTTCCC--GTGCG--AC--ATGTTCTTAGGTAAAGAAAACTCTCA-TTT-TGTTGTTCTT----------TT--AAACAAA-----AGTGTGAAATTTGACCTTCTCGCTTCGATCTTA-CCAATTTATCATCGGAAACC---CT-CGTT--AAC-GAATCTTTTCA-CC-----ATGGTC-CGATGG
gi|9 : atTTTCCGAACTAATTTTTT-TCTT----GAGGGGGAGCAAAT-CGTTGGCCATCGTTCTTCGGCAAATCGGAAGATTGATAATTGTCAAAATCAATTTTGCCACCA-AAAATATCCCCCCCCA---AATAAGC------CG-AATTTCA-GCAGTTTTCCGAATTTGACACA-CTTTCTTGAGGA-ACATATGAATCATATAGTTTTAGATAAAACTGCGAAGGCTCTGTTGAAACTTCTAAA-AGTATACCTAA-AGA-TATATGTTACCGGAGTATGCTGAGACACCGCATTTAGGACTTATC-TAGcacg