lowQualScore : 1111111111111111 111111111111111
lowQualScore : 11 22 7777777777 555555 22 1 4444 22 11 11111 55555555 1 3333333333 3333333333333333 333333333 22222 2222 8888888888888888888888888888888888888888888888888 333333333 555555555 2 1 7777777777777777777777777777777777777777777777777777777777777777777777 44444444444444444444444444 2 55555555555555555555555555555555 11 333 3333333 222 33 2222 11 333333 5555555555555 3333333 3333333333333333 1111 3 1 1111 666666666 1 22 22 11 555555 4 11 11 111111 3333 4 4 44444444444444444 6666666 3333333 8888888888888 222222222 33 4 777777777777 4 222222222222222 5555 55 4 8888888
lowQualScore : 22 11 5555555555 6 222222 88 0 0000 2 00 11 22222 00000000 6 6 99 3 4444444444 6 6666666666666666 99 6 222222222 1 1 77 888 33333 0 5555 5 5 1111111111111111111111111111111111111111111111111 5 66 000000000 0 666666666 5 3 1 5 5 66 5 9999999999999999999999999999999999999999999999999999999999999999999999 4 66 7 4 2 66 55555555555555555555555555 99999 4 5 00000000000000000000000000000000 5 55 6 111 5 6 1 1 0 6 8 3333333 3 999 000 6 5 77 0 55 99 0 6666 3 66 6 444444 6 99 6666666666666 6666666 8 1 2222222222222222 7777 2 5 3 8 7 8 7777 999999999 2 0 2 11 99 0 0 0 33 777777 2 0 4 0 3 33 3 33 4 777777 9999 2 2 2 0 2 0 55555555555555555 6 0000000 1111111 3333333333333 888888888 99 0 222222222222 0 6 555555555555555 2222 55 0 9999999
lowQualScore : .. .. .......... . ...... .. . .... . .. .. ..... ........ . . .. . .......... . ................ .. . ......... . . .. ... ..... . .... . . ................................................. . .. ......... . ......... . . . . . .. . ...................................................................... . .. . . . .. .......................... ..... . . ................................ . .. . ... . . . . . . . ....... . ... ... . . .. . .. .. . .... . .. . ...... . .. ............. ....... . . ................ .... . . . . . . .... ......... . . . .. .. . . . .. ...... . . . . . .. . .. . ...... .... . . . . . . ................. . ....... ....... ............. ......... .. . ............ . . ............... .... .. . .......
lowQualScore : 00 00 0000000000 0 000000 55 0 8888 5 66 00 00000 22222222 7 7 22 3 3333333333 7 7777777777777777 22 0 888888888 7 4 99 888 00000 4 9999 0 0 0000000000000000000000000000000000000000000000000 0 99 444444444 1 444444444 6 5 6 0 0 99 7 6666666666666666666666666666666666666666666666666666666666666666666666 4 11 2 4 8 99 22222222222222222222222222 11111 0 0 11111111111111111111111111111111 7 77 7 333 2 7 0 7 8 6 0 4444444 8 222 888 7 7 11 7 88 22 8 3333 3 00 7 333333 7 22 3333333333333 0000000 0 4 0000000000000000 0000 2 4 8 0 0 0 0000 888888888 5 0 5 55 88 8 2 2 22 000000 5 8 0 0 2 88 2 88 2 888888 5555 5 5 5 0 0 0 77777777777777777 7 0000000 7777777 0000000000000 777777777 00 0 555555555555 0 0 000000000000000 0000 00 0 0000000
consensus : NNGCTTCAAATGATAAAA-TCAGAT--CCTCGGTCNGCTCNAACCAATATAAG-TG-AGTT-CGACCGCTTTGTGGGTT--TT--C--AACAATAAT--A--AT-TG-TTC--GCAA-TC-TCTGATT--AGATTT-AT-AT---------T---TC--TTATTC-----ACTAATATTTCCCTATCT---GGGG----TTTTAATCAAA-TGA-GT-GAATCAA--ACAAT----ATCTAT-CN-AAAATGAATGA--C-A-ACAAT-TTAG-CTTCC-T--AAC-TAATAG-GCAAACAACAGAGGC--AGG-TCGGCTCT-ATTCGGGCCACTGT-CTCT-G--TCA-C-AG-TAC--TN-T-C-CC-TAACAAAAGTTAGTA-CTATG-CCTTGG-A-----CGAC---C-AC-CA--GGAAT-GC--TAACACTAT-GGCA--AG---CN---A--CAAGA-G---AT-CAG-----GTCG-GCTCTATTCGGGCCACTATCTCTGTCAC-------N-CC----TCCTAA-T---------TCC-TAT--C-TTGGTCGA--ACCAGCAAGA-ATGCTAACACTAA-GCAAG-AACAAGA-AAAGA---AA-CA-GTGGA-GCTCTATTC-GGG--CGCTGAATTATTCTCAA-GTCTTCCTTTAA-TTCTA-TTG---TA-TTAT-TT--AATTA--C-CTTT-TAG-ATGTTCACA-TT-NACCA-ACAGCTTAGACGGAA-------AAA----CTGAACG-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--GA-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGT-GTTGG---CATTCCATCATANCAA-GTCATC--AAAACGTTTGA--TTACATAGGAAAAAA-TC--ATCGA--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCAAAACGTTT-CCTACATTTATTTACCATAATCGAAATATG-AAAG-TAAAGCAATAAA-A-TC----CAACAAAA-TCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-CTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( gi|1 ) : TAGCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA--T-GAACCAATATAAGTTG-AGTTGCGGCCGTTTTGTGGGTT--TT--C--AACAATTATT-A--AT-TG-TTC--GCAA-TC-T-TGATTTTAGATTT-AT-AT---------T---TC--TTATTT-----ACTAATATTTCCCTATCT---GGGG----TTTTAATC-A--TGA-GT-AAATCAA--TCAAT----ATCTAT-CA-AAAATGGATGA--C-A-ACAAG-TTAGTCTTCC-T--AAC-TAATAGTGCAAACAACAGAGGTCAAAG-TCGGCTCTTATTCGGGCTACTGT-CTCT-G--TCA-C-AG-TAC--TAAT-C-CC-TAACAAAAGTTAGTGGCTATGCTCTTGGTC-----CGAC---C-ACTCA--AGAAT-GC--TAACACTAT-GGTA--AG---CT---A--CAAGA-G---AT-CAG-----GTCG-GCTCTATTCGGGCCA-TATCTCTGTCAC-------T-CC----TCCTAA-T---------TCC-TAT--C-TTGGTCGA--ACCAGCAAGA-ATGTTAACACAAA-GCAAG-AACAAGA-AAAGA---AA-CA-GTGGA-GCTCTATT--GGG--TGCTGAATTATTCTACA-GCCTTCCTTTAC-TTCTA-TTG---T--TTAT-TT--AATTA--T-TTTTTTAGCATGTTCAC--TT-TACCA-ACAGCT----------------AAA----CTGAATGTGCTCTGATGC-CGCTTAATATA-CT----CTTACGGAATGATGTCCA-TGTTCCGCTC-AAAAAGGGGTGTTGGGT-GTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAGGGAAAAA-TC--ATCAA--ACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCAAAATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAG-TAAAGCAATAAATA-TCAA--CAATAAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|7 : GCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCT-TAAACAATATAA--TGTAGTT-CG-CCGCTTTG--GGTTGTTT--C--AA-AAT-ATTGA--ATATG-TTC--GCAA-TC-T-TGA-TTTAGATTT-AT-AC---------TTGATCCGTTA-TT-----A--AATATTTCCCTA--T---GGGG------TTAATC-C--TGA-ATGAAATCAA---CACT----A--TAT-CT-AAAATG--TGAACC-ACACAAT-TTA-TGATCCAT--AGC-TAATA-T-CAAAC-ACAGATGC--AGG-TCGG--CTTATTCGGGC-ACGGT-CT-T-G--TCA-T-AG-TAC--CTATGT-CC-TAACAAAAGTTAGT-ACTATG-GCTTGG-A-----CGAC---CGACT----GGAAT-GC--T-AC-CCAT-GG-A--AA---TT---A--CAA-A-GCATAT-TAG-----ATC
gi|12 : tcGTCA--TCAAACCAATATATAATG-AGTT-TGACCGCTTT-TGAGTT--TT--C--AACAATAAC--G--AT-TA-TTC--GCAA-TC-TCTGATT--AGATTT-AC-AT---------T---TC--TTATTC-----ACT-ACATTTCCCTGTCT---CGGG-----TTTAATCAA--TGA-GT-GAATAAA--
gi|6 : atgtaaagactttttcctAACCAATATAA--TG-AGTT-CGACCGCTTT-TGGGGT--TT--C--AGCAATAA---A--AT-TA-TTT--GCAA-TC-TCTGATT--AGAATT-AT-AT---------T---TC--TTATTC-----AC-AATATTTCCCTATCT---GGGG-----TTTAATCAA--TGA-GT-AAATCAA--ACA------ATTTAT-CC-AAAACGAATGAC-C-A-AAAAT-TTAG-CTTCC-T--AAA-TGATAG-GCAAACAACa
gi|4 : ttgtaacgagtttttcctgtcgccaAGTCG-ACTTG--GCT-TTTTG---GTT--AT--CCAAACAAT-ATT-ATAGT-TG-TTTTAGCAAATC-TCTGATT--AGATTTTAT-ATCTCTGGTTTT---TC--TTACTTTCACAACT--TTTTTGCCTACAT---GGG-------TTAATC-AAATGA-GT-GA-TCAAAACAAAT----A-CTATACT-AAAC--GATAC--C-A-ACAATCTTAA-CTTCC-T--AAC-AAATAG-GCAAAAAAGAGAGGC--AGG-TCGG-TCT-ATTCAG-CACCTGT-GTCT-G--TCATC-AG-TAC--CATT-CGCCGTAACAAA-GTTAGTAACTATG----TGGCCTAGGACGAC---C--CCCATAGGAAT-GC--TACC-CTAT-GGTAGCAA---CTTAAA--CA-GA-G---AT--AG-----GTCG-GCTCTAT-CGGGCCA-CTTCTCTGTCAC-------A-CC----TCCT-A-T---------TCT-TATAAC-TTGGTCGACCACCA--AAGA-ATGCT-ACACTAT-GGAAGCAAC-------AGA---GA-CAGGTCG--GCTCTAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|11 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagTTTTGTGGTTC--TTTCC--AACAATAAA--A--AT-TG-TTT--GCAACTC-TCTG--TTTAG-TTT-ATTAT---------T---TC--TTATTC-----AC-AATATT--CCTTTCT---GAGGGGTCTTTTAATCAA--TGACGT-GAATattcggccactatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|9 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttctTTAT-----AC-TGCTTC--TCAA-TCAC-TGATC--AGATTT-AC----------------TG--TCAATT------CTAAT--TGCCCTA-CTAAGGGGG----TGGAAATC-A----A-GT-AAATGAA--TCG--------CT---TA-ATAAT---TGA------ACAA-------TTTCC-TGAAAT-AAATAG-GCCAGTACCAG--------G-TCAGCT-TCACTCGGGCCACTAT-CCCT-G--ATA-CTAGCTAT--TC-T-C-CC-TAACtga
gi|10 : atgcactctacgcTATGTCCCTATAT---GAAG----TTCTG-TC-AA-TGA-AT-AAACTAA--ACAAT----ATATGT----AATATAAATTA--C-CCACAAG-TTAA-CTTCC-C--AAC-----------AACA-TAGA---CATA--TCGGCTCT-ATTTGAGCCACTAT-CTCT-G--Tctatgactgtaagtactgtagtgtgtggtggatgacgtagga
gi|2 : T---GGGG----TTT-AATC-AA-TGA-GT-GAATCAA--ACAATTATAATCTAT-TACAAAATA-ATGA--CCA-ACAAT-TTAG-CTTCC-T--AAC-TAATAG-GCAAACAACAGAGGC--AGG-TCGGCTCT-ATTCGGGCCACTGT-CTCTTG--TCA-C-AA-TAC--TATT-C-CC-TAACAAAAGTTAGTA-CTATGGCCTTGG-A-----CGAC-----AC-CA--GGAAT-GCCGTAACACTATTGGTA--AG---CC---AACCAAAAAG---AT--AG-----GTCG-GCTCTATTCGGGCAC-TATCTCTGTTAC-------A-CC----T---AT-T---------TCC-TAC--C-TTGGTCGA---CCAGCAAGA-ATGTTAAC-CAAA-GCG-----CAAGACAGAGATATAA-CA-GTGGA-G-TCTATTC-GGG--TGCTGAGTTATTCT-CA-TTCTTCCTTAGA-TTTTA-TTG---T--TTAT-TT--AATTA--T-CTTT--AG-ATGGTCAC--TT-G--CA-ACAACTGAGACTGAA-------AAA----CTGAACG-GCTTTGATGC-CGTTTTATATA-CT----CTTA-GGA--GA-GTCCA-TGTTT-GCTCTAAAAGGGGGTGTTGGGT-GTTGGGT-CATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAAATC--ATCA----CATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC-AAACA-TTGTCTACATTTATTTACCATAATCATAATATG--ATGTTACAGCAATAAA-------------AAAA---AC-CC-CTTG-TGTTTCATCTTAAAAGT-CCAAAGTC------------ATGCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATaaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|3 : C-T--AAC--ACTATGGTAAGCAACAGAGAC--AGG-TCGGCTCT-ATTCGGGCCACTAT-CTCT-G--TCA-C----TCC--T------CC-TAAT-----TT----CCTA---TCTTGGT------CGAC---C-A-GCA--AGAAT-GT--TAACACAAA-GGCA--AG--------A--CAAGA-A---A---AGAAACAGTGGAGCTCTATTCGGG
gi|6 : tgaccttggtcgaccaccaagaatgC-T--AACCTTATGGT--AAGCAACAGA---CAAAGGTCGGCTCT-ATTCCGGCCACTGT-CTCT-A--TCA-C-A--CA----------CC-TA-------TT-----TTCTG-TCTGAGT------CGAC---C-A-GCA--AGAAT-GC--TGACACTAA-GACG--AGGAACT---A---AAGA-G----T---G-----G--A-GCTCTATTCGGGCtgctgaattattctcaagccttcctttacttctattgtattatttaattatttttagatgttcacttaccaacagctaaactgaatggctctgatgccgctttatatactcttaggagagtccatgttcgctctaaaaaggggtgttgggtgttgggtcattccatcatatcaagtcatcaaaacgtttgattacatagggaaaaatcatcacattacccacgcctccgggtacactcgtctcgaatgacaagcaaatattttctacatttatgtaccataatcaaaatatgaaagtaaagcaataaaaattcaacccaataaaagtcactacttgtgcttcatcttaaaagtccaaagtcatatatcaataatgcacacttaatacaagatgaatttctcggttgtaatctccgtaatgtcaattttcctgattgtcttcttggacacctctctggcgaactcagtttgagtaaactcatcacacttcaatat
gi|5 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaaacaacgttagtactatgtccttggacgaccaccaggaatgAGG-TCG---CTTATTCG---CACTATACTCT-GAATCA-C-AC-T-CGGTTAT-T-CT-AAACAAA--CTGGAGG--AT---------------CGACATAC-AC-----AGAATTGC--TAACACTAT-GACA--A------------CA-GA-G---A--CAG-----GTCG--CTCTATTCG--CCACTATCTCTGTCAC-------A-CC----TCCTTA-T---------TTAATAT--CATTGGTTGAG-ACCATCAAGATATGCTAA-ACTAA-GCAAG-A-CAA-A-AAAGATA-AA-CA-----------TA----AGA--TGC-GAGT--------G-GTCTTCCTTTAA-TTCTAATTA---C--T-AT-TTCTAATTA--C-CTTT--AG--TGTTCATAGCT-GACTG-AGACAT----------------GAAAAAGCTGAATG-GCTCTGACGC-CACTTTATATA-CTAACCCTTA--GAAGCAGGT-CA-T-TTCCTCTC---AAAGGCGTGTTAAGTCATT------ATTC---TATATCAA-G-CATC--AAAACG-TTGA--TTACATAAGCAAAA---C--ATCGATCACATTA-CCACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGCAA---GTTT--TCA-ATTTATTGC-CATAATCGAAATAT-AAAAT-TAAAGCAACAAA-A-TC-C--CAACAAAA-TTACATACCTTGA-GCTTCATCTTCAAgctga
gi|6 : acAACAAC-GTTAGTA-CTATGTCCTTGG-A-----CGAC---C-AC-CA--GGAAT-GC--TAACCTTAT-GGTA--AG---CA---A--C-AGA-C---A--AAG-----GTCG-GCTCTATTCCGGCCACTGTCTCTATCAC---------AC----ACCTAT-T---------TTC-TGT--C-TGAGTCG---ACCAGCAAGA-ATGCTGACACTAA-G------ACGAGG-AACTA---AA-GA-GTGGA-GCTCTATTC-GGG--CGCTGA
gi|16 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaAGTTAGTA-CTATGGCCTTGG-A-----CGAC---C-AC-CT--GGAAT-GC--TAACCCTAT-G
gi|3 : CTTGGTC------GAC---C-AC-CA--AGAAT-GC--TAACACTAT-GGTA--AG---CA---A--CA-GA-G---A--CAG-----GTCG-GCTCTATTCGGGCCACTATCTCTGTCAC-------T-CC----TCCTAATT---------TCC-TAT--C-TTGGTCG---ACCAGCAAGA-ATGTTAACACAAAGGCAAG--ACAAGA-AAAGA---AA-CA-GTGGA-GCTCTATTC-GGG--TGCTGAATTATTCTCAA-GCCTTCCTTTAC-TTCTA-TTG---TA-TTAT-TT--AATTA-----TTTTTAG-ATGTTCAC---T-TACCA-ACAGCT----------------AAA----CTGAATG-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--GA-GTCCA-TGTT-CGCTCTAAAAAGGGGTGTTGGGT-GTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAAA-TC--ATC----ACATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGACA-AGC-AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAAG-TAAAGCAATAAAAATTCAACCCAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|7 : tgacA-G---ATGCAG-----GTCG-GCT-TATTCGGGCAC-GGTCT-TGTCATAG-----TACCTATGTCCTAA-CAAAAGTTAGTAC-TATGGC-TTGGACG---ACCGACTGGA-ATGCTA
gi|10 : tcgcttcaaatgataaaatcagatcctcgatccgcttaaacaatataatgtagttcgccgctttgggttgtttcaaaatattgaatatgttcgcaatcttgatttagatttatacttgatccgttattaaatatttccctatggggttaatcctgaatgaaatcaacactatatctaaaatgtgaaccacacaatttatgatccatagctaatatcaaacacA-G---A--CAT-----ATCG-GCTCTATTTGAGCCACTATCTCTGTcccatggaaattacaaagcatattagatc
gi|9 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccaacaacat---AC-CAG-----GTCA-GCTTCACTCGGGCCACTATCCCTGATACTAGCTATT-CT----CCCTAA------------CC-TAT--aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|8 : atgcactctacgcttatactgcttctcaatcactgatcagatttactgtcaattctaattgccctactaagggggtggaaatcaagtaaatgaatcgcttaataattgaacaatttcctgaaataaataggccagtA-AAATA---AAGCA-GTGGACGCTCTATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTA-TTG---TATTTATATC--AATTAGCC-TATTGTAAGATGTTCACA-TTATACCAGACAGCTTAGACGGAGACTTGAAAAA----CTGAACAAGCTCTGA-GCACGCCTTATATACCT----CTTACGGA--GA-GTCCACTGTT-CGCTC-TAAACGAAGTGTTTGG--GTTAG------TCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAGAAAAAAG-TCCTATC-A--ACATgactgtaagtactgtagtgtgtggtggatgacgtagga
gi|14 : tcA-GTGGA-GCTCTATTC-GGG--CGCTGAATTATTTTCAA-GTTTTCCTTTAA-TTCTA-TTG---TA-TTAT-CT--AATAA--CATTTATTA-TATGTT
gi|13 : ATTCTCAA-GTCTTCCTTTAA-TTCTA-TTGACGTA-TTAT-TT--AATTA--C-CTCT--AG-ATGTTAAC--TC--ACCA-ACAACTTAACTGAGACTGAA--AAA----CTGAAAG-GCTTTGATGC-CGCTTTATATA-CT----CTTA-GGAaatt
gi|15 : --ACATTACC-ACGCCTCC--GTA-CATTCGTCCCGAATGAA--AACA
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|17 ): ACTACCCACGCCTCTGTATACATGCGTCCCGATGTTT
Alignments
lowQualScore : 111111111111111
lowQualScore : 2 11 22 3333 222 11 1 22222 1 2222222222222 11 11111 11111 333333333 111 222222 222222222222222 2222222 1 33333333333333333 111 222 2222222 111 111111 11 2222 333333 666666666666666666666 1111 1 1 11 4444 11 11 11 11 3333 1 1111 11 11 1 1 44444444444444444 1 2222 1 1 111 111111111111111 1 11 11 1
lowQualScore : 2 0 33 11 7777 1 2 000 8 8 88 3 11 5 99 99 6 33333 6 77 1 4 5 77 5 5 7777777777777 77 77 66 66 0 0 5 777 99999 77777 4 5 000000000 555 88 555555 5 999 77 1 66 1 0 66 4 5 2 5 2 5 5 66 5 5 555555555555555 3 1 6 888 0000000 888 4 8 66 4 66 1 4 4 2 2 66 55555555555555555 5 5 1 0 222 5 66 5 111 2 5 5 7 0 2 5 3 1 6666666 0 0 5 555 5 4 5 2 5 888 5 1 5 111111 5 77 33 77 2222 5 111111 6 555555555555555555555 88 6 1 6 6 4444 3 99 8 8 8 3 66 88 3 1111 1 8 0 11 0 11 1 11 11 3333 6 2 6 0 3 8888 22 3 2 22 2 3 2 0 2 0 77777777777777777 0 3 0000 0 3 999 7 999999999999999 3 7 44 88 3
lowQualScore : . . .. .. .... . . ... . . .. . .. . .. .. . ..... . .. . . . .. . . ............. .. .. .. .. . . . ... ..... ..... . . ......... ... .. ...... . ... .. . .. . . .. . . . . . . . .. . . ............... . . . ... ....... ... . . .. . .. . . . . . .. ................. . . . . ... . .. . ... . . . . . . . . . ....... . . . ... . . . . . ... . . . ...... . .. .. .. .... . ...... . ..................... .. . . . . .... . .. . . . . .. .. . .... . . . .. . .. . .. .. .... . . . . . .... .. . . .. . . . . . . ................. . . .... . . ... . ............... . . .. .. .
lowQualScore : 5 0 88 55 5555 0 5 000 0 0 88 8 00 0 22 22 7 88888 7 99 4 3 7 99 7 7 3333333333333 99 99 11 99 4 1 1 888 44444 88888 4 0 444444444 333 99 777777 7 666 99 9 44 4 1 99 5 0 5 0 2 0 0 99 7 7 999999999999999 0 4 2 999 0000000 333 4 9 11 4 11 9 4 4 5 6 11 88888888888888888 0 0 0 1 111 0 99 0 222 5 0 0 1 7 1 7 0 4 3333333 1 7 0 666 0 4 0 5 0 888 7 4 7 777777 7 99 11 99 0000 7 000000 7 222222222222222222222 88 7 7 7 7 2222 3 22 0 0 0 2 22 88 2 0000 0 0 8 00 8 00 8 88 00 0000 7 5 7 6 2 8888 00 2 5 22 5 2 0 0 5 0 55555555555555555 0 2 2222 0 3 777 3 333333333333333 3 3 00 33 3
consensus : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-AGT-G-AGTT-CGACC--GCTTT-TGGGT--TTT--CAA-CAATA--AT-AAT-TGTTC--GCAA-TCTCTGA-TT--AGATTT-A-TAT---------T---TC--TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--A-CTA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGCAA--C--A---AGA-G---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCTAN-TTCC-TAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAA-GCAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGCT-A-----GAC----------GAAAAACTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGT-GTTGGGT-CATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAAA-TC--ATC-A--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCAAAATATTT-TCTACATTTATNTACCATAATCAAAATATG-AAANTAAAGCAAT-AAA-AT-C--CAAC------AAAA-TCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( family-2129 ) : NNGCTTCAAATGATAAAA-TCAGAT--CCTCGGTCNGCTCNAACCAATATA-AGT-G-AGTT-CGACC--GCTTTGTGGGT--TTT--CAA-CAATA--AT-AAT-TGTTC--GCAA-TCTCTGA-TT--AGATTT-A-TAT---------T---TC--TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--A-CTN-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGCAAGCNA--C--A---AGA-G---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACNCCTCCTAA-TTCC-TAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACTAA-GCAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCACATT-NACCA-ACAGCTTA-----GAC--G-------GAAAAACTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGT-GTTGG---CATTCCATCATANCAA-GTCATC--AAAACGTTTGA--TTACATAGGAAAAAA-TC--ATCGA--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCAAAACGTTT-CCTACATTTATTTACCATAATCGAAATATG-AAAGTAAAGCAAT-AAA-AT-C--CAAC------AAAA-TCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-CTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|1 : GCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA---TGAACCAATATA-AGTTG-AGTTGCGGCC--GTTTTGTGGGT--TTT--CAA-CAATT--ATTAAT-TGTTC--GCAA-TCT-TGA-TTTTAGATTT-A-TAT---------T---TC--TTA--TTTACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--A--TGA-GTAAATC-AATCAAT----AT-CTATCA-AAAATGGATGA--C-A-ACAAG-TTA-GTCTTCCT--AACTAATAGTGCAAACAACAGAGGTCAAAGTCGGCTCTTATTCGGGCTA-CTGT-CTCT-G--TCA-C-AG-T--A-CTAAT---CCCTAACAAAAGTTAGT-GGCTAT---G-CTCTTGGTC-CGAC-CACTC--AA-GAATGC--TAACACTAT-GGTAAGCTA--C--A---AGA-G---ATCAGGTCGGCTCT-ATTCGGGCCA-TATCTCT-GTCACTCCTCCTAA-TTCC-TAT--C-TTGGTCGA--ACCAGC-AAGA-ATGTTAACACAAA-GCAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATT-GGG---TGCTGAATTATTC-TACAGCCTTCCTTTA-CTTCTATTG---T--TTAT-TT--AATTATTTTT--TT---AGCATGTTCAC-TT-TACCA-ACAGCT-----------------------AAACTGAAT-GTGCTCTGATGC-CGCTTAATATA-CT----CTTACGGAATG-ATGTCCA-TGTTCCGCTC-AAAAAGGGGTGTTGGGT-GTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAGGGAAAAA-TC--ATCAA--ACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCAAAATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAGTAAAGCAAT-AAATAT-CAACAAT------AAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|10 : ta--TATGTCCCTATAT---GAAG----TTCTG-TC--AA-TGA-ATAAACT-AAACAAT----A---TATGT-AATATAAATTAC-C-C-ACAAG-TTA-A-CTTCCC---------------AACAACATAGAC--ATATCGGCTCT-ATTTGAGCCA-CTAT-CTCT-G--T
gi|10 : AACAA--C--AT--AGA-------CATATCGGCTCT-ATTTGAGCCACTATCTCT-GTAAGG-------------------C-TTGG-CTA--ACCACC-AGAT-GTGCT---ACTAA-GTAAG-GCAATACAAGG-GAATA---AA-CA-aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|11 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccTTTGTGGTT--CTTTCCAA-CAATA--AA-AAT-TGTTT--GCAACTCTCTGT-TT--AG-TTT-ATTAT---------T---TC--TTA--TTCAC-AA--TATT--CCTTTCT---GAGGGGTCTTTTAATC---AATGACGTGAATtatattc
gi|12 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttcttT--CCT--GTCA--TCAAACCAATATATAAT-G-AGTT-TGACC--GCTTT-TGAGT--TTT--CAA-CAATA--AC-GAT-TATTC--GCAA-TCTCTGA-TT--AGATTT-A-CAT---------T---TC--TTA--TTCACT-A--CATTTCCCTGTCT---CGGG-----TTTAATC---AATGA-GTGAATA-AAAtga
gi|13 : atgtaaagacttttATTC-TCAAGTCTTCCTTTA-ATTCTATTGACGTA-TTAT-TT--AATTA-CCTC--T----AG-ATGTTAAC--T-CACCA-ACAACTTAACTGAGAC--T-------GAAAAACTGAAA-G-GCTTTGATGC-CGCTTTATATA-CT----CTTA-GGA--
gi|14 : A-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTT-TCAAGTTTTCCTTTA-ATTCTATTG---TA-TTAT-CT--AATAA-CATTTATT---AT-ATGTT
gi|15 : --ACATTACC-ACGCCTCCG--TA-CATTCGTCCCGAATGAAAAaatt
gi|16 : AGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC-CAC-C--TG-GAATGC--TAACCCTAT-Gcacattcattatttttta
gi|17 : ACTACCCACGCCTCTGTATA-CATGCGTCCCGA
gi|2 : T---GGGG----TTT-AATC--AA-TGA-GTGAATC-AAACAATTATAAT-CTATTACAAAAT-AATGA--CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCTTG--TCA-C-AA-T--A-CTA-TT--CCCTAACAAAAGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC--AC-C--AG-GAATGCCGTAACACTATTGGTAAGCCAACC--A---AAAAG---AT-AGGTCGGCTCT-ATTCGGGC-ACTATCTCT-GTTACACCT---AT-TTCC-TAC--C-TTGGTCGA---CCAGC-AAGA-ATGTTAAC-CAAA-GCG---------CAAGACAGAGATATAA-CA-GTGGA-G-TCT-ATTCGGG---TGCTGAGTTATTC-TCA-TTCTTCCTTAG-ATTTTATTG---T--TTAT-TT--AATTA-TCTT--T----AG-ATGGTCAC-TT-G--CA-ACAACTGA-----GAC--T-------GAAAAACTGAAC-G-GCTTTGATGC-CGTTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTT-GCTCTAAAAGGGGGTGTTGGGT-GTTGGGT-CATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAAATC--ATC----ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCAAA-CATTG-TCTACATTTATTTACCATAATCATAATATG-ATGTTACAGCAAT-AAA-A---------------AAAA-CC-C----CTTG-TGTTTCATCTTAAAAGT-CCAAAGTCAT------------GCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATtgttt
gi|3 : -C-CTTGG-T-CGAC-CAC-C--AA-GAATGC--TAACACTAT-GGTAAGCAA--C--A----GA-G---A-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACTCCTCCTAATTTCC-TAT--C-TTGGTCG---ACCAGC-AAGA-ATGTTAACACAAAGGCAAG------ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---TGCTGAATTATTC-TCAAGCCTTCCTTTA-CTTCTATTG---TA-TTAT-TT--AATTA--TTT--TT---AG-ATGTTCAC--T-TACCA-ACAGCT-----------------------AAACTGAAT-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTT-CGCTCTAAAAAGGGGTGTTGGGT-GTTGGGT-CATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAAA-TC--ATC----ACATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGAC-AAGC-AAATATTT-TCTACATTTATGTACCATAATCAAAATATG-AAAGTAAAGCAATAAAA-AT-T--CAACCCAATAAAAG-TCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|4 : tga-G-AGT--CGACTTGGCTTTTTGGTT--ATC--CAAACAATATTAT-AGT-TGTTTTAGCAAATCTCTGA-TT--AGATTTTA-TATCTCTGGTTTT---TC--TTACTTTCAC-AACTTTTTTGCCTACAT---GGG-------TTAATC--AAATGA-GTG-ATCAAAACAA-----ATACTATAC-TAAACG-ATAC--C-A-ACAATCTTA-A-CTTCCT--AACAAATAG-GCAAAAAAGAGAGGC--AGGTCGG-TCT-ATTCAG--CACCTGT-GTCT-G--TCATC-AG-T--A-CCA-TTCGCCGTAAC-AAAGTTAGTAA-CTATGTGG-C-CTAGG-A-CGAC-CCC-CATAG-GAATGC--T-ACCCTAT-GGT-AGCAA--CTTAAACAGA-G---AT-AGGTCGGCTCT-A-TCGGGCCACT-TCTCT-GTCACACCTCCT-A-TTCT-TATAAC-TTGGTCGACCACCA---AAGA-ATGCT-ACACTAT-GGAAGCA----AC-------AGA---GA-CAGGTCG--GCTCTAATTCGGC---CACT
gi|4 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgaAACAGAGAT--AGGTCGGCTCT-AT-CGGGCCA-CT-T-CTCT-G--TCA-C-A--------CC-T---CC-----------TATT-C-TTAT---A-A-CTTGG-T-CGAC-CAC-C--AAAGAATGC--TA-CACTAT-GG-AAGCAA--C--A----GA-G---A-CAGGTCGGCTCTAATTC-GGCCACTATCTCTGGTC-CACCTCCTAT-TTCC-TAT--C-TTGGTCG---ACCAGTAAAGA-ATGTTatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|5 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagagtcgacttggctttttggttatccaaacaatattatagttgttttagcaaatctctgattagattttatatctctggtttttcttactttcacaacttttttgcctacatgggttaatcaaatgagtgatcaaaacaaatactatactaaacgataccaacaatcttaacttcctaacaaataggcaaaaaagagaggcaggtcggtctattcagcacctgtgtctgtcatcagtaccattcgccgtaacaaagttagtaactatgtggcctaggacgacccccataggaatgctaccctatggtagcaacttaC--AGGTCG-CT-T-ATTCG---CA-CTATACTCT-GAATCA-C-AC-TCGG-TTA-T---TCTAAACAAA--CTGG------A-----------GG-ATCGACATACAC--AG-AATTGC--TAACACTAT-GACAA------C--A----GA-G---A-CAGGTCG-CTCT-ATTCG--CCACTATCTCT-GTCACACCTCCTTA-TTTAATAT--CATTGGTTGAG-ACCATC-AAGATATGCTAA-ACTAA-GCAAG-A-----CAA-A-AAAGATA-AA-CA--TA-A-G-----ATGCGAG---TG----------------GTCTTCCTTTA-ATTCTAAT----TA-CTAT-TTCTAATTA-CCTT--T----AG--TGTTCA---T-AGCTG-AC---TGA-----GACATG-------AAAAAGCTGAAT-G-GCTCTGACGC-CACTTTATATA-CTAACCCTTA-GAA--GCA-GGTCA-T-TTCCTCTC---AAAGGCGTGTTAAGTCATT------ATTCTAT---ATCAA-G-CATC--AAAACGTT-GA--TTACATAAGCAAAA---C--ATCGATCACATTACC-ACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGCAA---GTTT-TC-A-ATTTATT-GCCATAATCGAAATATA-AAATTAAAGCAAC-AAA-ATCC--CAAC------AAAA-TTACATACCTTG-AGCTTCATCTTCAA
gi|6 : aT--CCT--GTC-GC-CAAACCAATATA-A-T-G-AGTT-CGACC--GCTTT-TGGGG--TTT--CAG-CAATA--A--AAT-TATTT--GCAA-TCTCTGA-TT--AGAATT-A-TAT---------T---TC--TTA--TTCAC-AA--TATTTCCCTATCT---GGGG-----TTTAATC---AATGA-GTAAATC-AAACA------AT-TTATCC-AAAACGAATGAC-C-A-AAAAT-TTA-G-CTTCCT--AAATGATAG-GCAAACAAC
gi|6 : ttgtaacgagttttAACAAC-GTTAGT-A-CTAT---GTC-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACCTTAT-GGTAAGCAA--C------AGA-C---A-AAGGTCGGCTCT-ATTCCGGCCACTGTCTCT-ATCACACA-CCTAT-TTTC-TGT--C-TGAGTCG---ACCAGC-AAGA-ATGCTGACACTAA-G----------ACGAGG-AACTA---AA-GA-GTGGA-GCTCT-ATTCGGG---CGCTGAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|7 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaGCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCTTAAA-CAATATA-A-T-GTAGTT-CG-CC--GCTT--TGGGTTGTTT--CAA--AATA--TTGAATATGTTC--GCAA-TCT-TGATTT--AGATTT-A-TAC---------TTGATCCGTTA--TT-A--AA--TATTTCCCTA--T---GGGG------TTAATCCTGAATGA----AATC--AACACT----A---TATCT-AAAATG--TGAACC-ACACAAT-TTATG-ATCCAT--AGCTAATA--TCAAAC-ACAGATGC--AGGTCGGCT-T-ATTCGGG-CA-CGGT-CT-T-G--TCA-T-AG-T--ACCTA-TG--TCCTAACAAAAGTTAGT-A-CTAT---G-G-CTTGG-A-CGAC-CGA-C--TG-GAATGC--T-AC-CCAT-GG-AAATTA--C--A---A-A-GCATATTAGATC
gi|8 : tcA-AAATA---AAGCA-GTGGACGCTCT-ATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTATTG---TATTTATATC--AATTAGCCTA--TTGTAAG-ATGTTCACATTATACCAGACAGCTTA-----GAC--GGAGACTTGAAAAACTGAACAA-GCTCTGA-GCACGCCTTATATACCT----CTTACGGA--G-A-GTCCACTGTT-CGCTCT-AAACGAAGTGTTTGG--GTTAG------TCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAGAAAAAAG-TCCTATC-A--ACAT
gi|9 : tcTTC--TCAA-TCACTGA-TC--AGATTT-A-C-T---------G---TC--A-A--TTC--TAA--T--TGCCCTA-CTAAGGGGG----TGGAAATC--AAGTAA-ATGAATC-G-------------CT-T-----AATAATTGA------ACAAT-TT-------CCTGAAATAAATAG-GC------CAGTACC--AGGTCAGCTTC-ACTCGGGCCA-CTAT-CCCT-G--ATA-CTAGCT--A-TTC-T---CCCTAAC
Alignments
lowQualScore : 1 11 22 3333 1111 11 111 22222 1 11 222222222 1111 11 11111 11111 2222222222 111 222222 1 222 1111 22222222 3333333333333333 1111 333333333333 111 111111 1 2222 111111 77777777777777777777 1111 1 11 11 11 11 11 111 111111 1 1 5555555555555 222222222 1 1 11111 888888888888888 1 1 11 1
lowQualScore : 1 2 33 11 6666 2 7777 8 88 3 11 6 6 99 111 99 33333 6 77 1 4 33 5 5 222222222 2222 5 77 66 66 0 0 2 777 44444 22 77777 4 5 3 6666666666 555 88 555555 5 999 77 1 66 1 0 66 4 5 5 2 5 5 66 5 5 1 77 5 5 111 1 6 2222 11111111 888 4 8 66 4 66 1 4 4 99 4 7777777777777777 5 5 0 0 5 7 5 66 5 8888 2 5 5 7 0 1 000000000000 0 0 5 555 5 4 5 2 5 888 5 1 5 111111 5 77 1 3 77 2222 5 666666 6 33333333333333333333 6 88 6 1 6 6 4444 3 99 8 8 8 33 66 0 0 8 1 8 0 11 0 11 8 1 8 99 666 6 2 6 0 5 777777 88 2 0 2 3 0 1 6666666666666 4 222222222 0 3 77777 7 333333333333333 3 7 3 88 3
lowQualScore : . . .. .. .... . .... . .. . .. . . .. ... .. ..... . .. . . .. . . ......... .... . .. .. .. . . . ... ..... .. ..... . . . .......... ... .. ...... . ... .. . .. . . .. . . . . . . .. . . . .. . . ... . . .... ........ ... . . .. . .. . . . .. . ................ . . . . . . . .. . .... . . . . . . ............ . . . ... . . . . . ... . . . ...... . .. . . .. .... . ...... . .................... . .. . . . . .... . .. . . . .. .. . . . . . . .. . .. . . . .. ... . . . . . ...... .. . . . . . . ............. . ......... . . ..... . ............... . . . .. .
lowQualScore : 0 0 88 55 0000 5 5555 0 88 8 00 7 7 22 777 22 88888 7 99 4 3 66 7 7 999999999 1111 7 99 11 99 4 1 5 888 00000 88 88888 4 0 4 4444444444 333 99 777777 7 666 99 9 44 4 1 99 5 0 0 2 0 0 99 7 7 4 99 7 7 444 4 2 1111 22222222 333 4 9 11 4 11 9 4 4 55 4 4444444444444444 0 0 5 1 0 6 0 99 0 4444 5 0 0 1 7 0 111111111111 1 7 0 666 0 4 0 5 0 888 7 4 7 777777 7 99 4 0 99 0000 7 777777 7 22222222222222222222 7 88 7 7 7 7 2222 3 22 0 0 0 22 22 8 8 0 4 0 8 00 8 00 0 4 0 00 111 7 5 7 8 6 444444 88 5 8 5 2 0 0 8888888888888 2 222222222 0 3 77777 3 333333333333333 3 3 3 33 3
consensus : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-ATTT-CCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( family-2129 ) : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-ANTT-CCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATNTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAACAAAA-TCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|1 : GCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA---TGAACCAATATA-A-GTTGAGTTGCGGCC--GTTTTGTG-GGTT--TT---C--AACAATT--ATTAAT-TGTTC--GCAA-TCT-TGATTTTAGATTT-A-TAT---------TT----C-TTA--TTTACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--A--TGA-GTAAATC-AATCAAT----AT-CTATCA-AAAATGGATGA--C-A-ACAAG-TTA-GTCTTCCT--AACTAATAGTGCAAACAACAGAGGTCAAAGTCGGCTCTTATTCGGGCTA-CTGT-CTCT-G--TCA-C-AG-T--AC-TAAT---CCCTAACAAAAGTTAGT-GGCTAT---G-CTCTTGGTC-CGAC-CACTC--AA-GAATGC--TAACACTAT-GGTAAGC-TAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCA-TATCTCT-GTCACTCCTCCT-AATT-CCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGTTAACACAAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATT-GGG---TGCTGAATTATTC-TACAGCCTTCCTTTA-CTTCTATTG---T--TTAT-TT--AATTATTTTT--TT---AGCATGTTCAC-TT-TACCA-ACAGC-T---------------------AAA-CTGAAT-GTGCTCTGATGC-CGCTTAATATA-CT----CTTACGGAATG-ATGTCCA-TGTTCCGCTC-AAAAAGGGGTGTTGGGTGTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATCAAACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCA--AAATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAGTAAAGCAATAAATA------T-CAACAATAAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|10 : ta--TATGTCCCTATAT---GAAG----TTCTG-TC--AA-TGA-ATAAACT-AAACAAT----A---TATGT-AATATAAATTAC-C-C-ACAAG-TTA-A-CTTCCC---------------AACAACATAGAC--ATATCGGCTCT-ATTTGAGCCA-CTAT-CTCT-G--T
gi|10 : AAC-AAC--AT--AGA------CATATCGGCTCT-ATTTGAGCCACTATCTCT-GTAA-----------------GG--C-TTGG-CTA--ACCACC-AGAT-GTGCT---ACTAAG-TAAG-GCAATACAAGG-GAATA---AA-CA-aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|11 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccTTT-TGTGGTT--CTTTCC--AACAATA--AA-AAT-TGTTT--GCAACTCTCTGTTT--AG-TTT-ATTAT---------TT----C-TTA--TTCAC-AA--TATT--CCTTTCT---GAGGGGTCTTTTAATC---AATGACGTGAATtatattc
gi|12 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttctGTAAAGACTTTTT--CCT--GTCA--TCAAACCAATATATA-AT-GAGTT-TGACC--GCTTT-TG-AGTT--TT---C--AACAATA--AC-GAT-TATTC--GCAA-TCTCTGATT--AGATTT-A-CAT---------TT----C-TTA--TTCACT-A--CATTTCCCTGTCT---CGGG-----TTTAATC---AATGA-GTGAATA-AAAtga
gi|13 : atATTC-TCAAGTCTTCCTTTA-ATTCTATTGACGTA-TTAT-TT--AATTA-CCTC--T----AG-ATGTTAAC-T--CACCA-ACAAC-TTAACTGAGACT-------GAAAAA-CTGAAA-G-GCTTTGATGC-CGCTTTATATA-CT----CTTA-GGA--
gi|14 : A-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTT-TCAAGTTTTCCTTTA-ATTCTATTG---TA-TTAT-CT--AATAA-CATTTATT---AT-ATGTT
gi|15 : ACATTACC-ACGCCTCCG--TA-CATTCGTCCCGAATGAAAACACATTCATTATTTTT-TAaatt
gi|16 : AGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC-CAC-C--TG-GAATGC--TAACCCTAT-G
gi|17 : ACTACCCACGCCTCTGTATA-CATGCGTCCCGA
gi|2 : T---GGGG----TTT-AATC--AA-TGA-GTGAATC-AAACAATTATAAT-CTATTACAAAAT-AATGA--CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCTTG--TCA-C-AA-T--AC-TA-TT--CCCTAACAAAAGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC--AC-C--AG-GAATGCCGTAACACTATTGGTAAGCCAACCAA---AAAG---AT-AGGTCGGCTCT-ATTCGGGC-ACTATCTCT-GTTACACCT----ATTT-CCTAC--C-TTGGTCGA---CCAGC-AAGA-ATGTTAAC-CAAAG-CG---------CAAGACAGAGATATAA-CA-GTGGA-G-TCT-ATTCGGG---TGCTGAGTTATTC-TCA-TTCTTCCTTAG-ATTTTATTG---T--TTAT-TT--AATTA-TCTT--T----AG-ATGGTCAC-TT-G--CA-ACAAC-TG-----AGACT-------GAAAAA-CTGAAC-G-GCTTTGATGC-CGTTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTT-GCTCTAAAAGGGGGTGTTGGGTGTTGG-GTCATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC---AAACATTGTC-TACATTTATTTACCATAATCATAATATG-ATGTTACAGCAATAAA-A---------------AAAA-CC-C----CTTG-TGTTTCATCTTAAAAGT-CCAAAGTC------------ATGCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATtgttt
gi|3 : -C-CTTGG-T-CGAC-CAC-C--AA-GAATGC--TAACACTAT-GGTAAGC-AAC--A----GAG---A-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACTCCTCCT-AATTTCCTAT--C-TTGGTCGA---CCAGC-AAGA-ATGTTAACACAAAGGCAAG-A-----CAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---TGCTGAATTATTC-TCAAGCCTTCCTTTA-CTTCTATTG---TA-TTAT-TT--AATTA-T-TT--TT---AG-ATGTTCAC-TT--ACCA-ACAGC-T------A---------------AA-CTGAAT-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTC-GCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-A-CATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGACAA-GCA--AA-TATTTTC-TACATTTATGTACCATAATCAAAATATG-AAAGTAAAGCAATAAA-AATTCAAC-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|4 : tga-GAGT--CGACTTGGCTTT-TT-GGTT--AT---CCAAACAATATTAT-AGT-TGTTTTAGCAAATCTCTGATT--AGATTTTA-TATCTCTGGTTTTT----C-TTACTTTCAC-AACTTTTTTGCCTACAT---GGG-------TTAATC--AAATGA-GTG-ATCAAAACAA-----ATACTATAC-TAAACG-ATAC--C-A-ACAATCTTA-A-CTTCCT--AACAAATAG-GCAAAAAAGAGAGGC--AGGTCGG-TCT-ATTCAG--CACCTGT-GTCT-G--TCATC-AG-T--AC-CA-TTCGCCGTAAC-AAAGTTAGTAA-CTATGTGG-C-CTAGG-A-CGAC-CCC-CATAG-GAATGC--T-ACCCTAT-GGT-AGC-AACTTAAACAGAG---AT-AGGTCGGCTCT-A-TCGGGCCACT-TCTCT-GTCACACCTCCT-A-TT-CTTATAAC-TTGGTCGACCACCA---AAGA-ATGCT-ACACTATG-GAAGCA----AC-------AGA---GA-CAGGTCG--GCTCTAATTCGGC---CACT
gi|4 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgaAACAGAGAT--AGGTCGGCTCT-AT-CGGGCCA-CT-T-CTCT-G--TCA-C-ACCT--CC-TA-T---TCTTA--------TAA---------------CTTGG-T-CGAC-CAC-C--AAAGAATGC--TA-CACTAT-GG-AAGC-AAC--A----GAG---A-CAGGTCGGCTCTAATTC-GGCCACTATCTCTGGTC-CACCTCCT-ATTT-CCTAT--C-TTGGTCG---ACCAGTAAAGA-ATGTTatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|5 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagagtcgacttggctttttggttatccaaacaatattatagttgttttagcaaatctctgattagattttatatctctggtttttcttactttcacaacttttttgcctacatgggttaatcaaatgagtgatcaaaacaaatactatactaaacgataccaacaatcttaacttcctaacaaataggcaaaaaagagaggcaggtcggtctattcagcacctgtgtctgtcatcagtaccattcgccgtaacaaagttagtaactatgtggcctaggacgacccccataggaatgctaccctatggtagcaacttaC--AGGTCG-CT-T-ATTCG---CA-CTATACTCT-GAATCA-C-AC-TCGGT-TA-T---TCTAAACAAA--CTGG------A-----------GG-ATCGACATACAC--AG-AATTGC--TAACACTAT-GA----C-AAC--A----GAG---A-CAGGTCG-CTCT-ATTCG--CCACTATCTCT-GTCACACCTCCTTATTT-AATAT--CATTGGTTGAG-ACCATC-AAGATATGCTAA-ACTAAG-CAAG-A-----CAA-A-AAAGATA-AA-CA--TA-A-G-----ATGCGAG---TG----------------GTCTTCCTTTA-ATTCTAAT----TA-CTAT-TTCTAATTA-CCTT--T----AG--TGTTCA---T-AGCTG-ACTG---------AGACAT------GAAAAAGCTGAAT-G-GCTCTGACGC-CACTTTATATA-CTAACCCTTA-GAA--GCA-GGTCA-T-TTCCTCTC---AAAGGCGTGTTAAGTC-----ATTATTCTAT---ATCAA-G-CATC--AAAACGTT-GA--TTACATAA-GCAAAACATCG-ATC-A-CATTACC-ACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGCA--AG---TTTTC--A-ATTTAT-TGCCATAATCGAAATATA-AAATTAAAGCAACAAA-A------TCC--CAACAAAA-TTACATACCTTG-AGCTTCATCTTCAA
gi|6 : aT--CCT--GTC-GC-CAAACCAATATA-A--T-GAGTT-CGACC--GCTTT-TG-GGGT--TT---C--AGCAATA--A--AAT-TATTT--GCAA-TCTCTGATT--AGAATT-A-TAT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG-----TTTAATC---AATGA-GTAAATC-AAACA------AT-TTATCC-AAAACGAATGAC-C-A-AAAAT-TTA-G-CTTCCT--AAATGATAG-GCAAACAAC
gi|6 : ttgtaacgagttttAACAAC-GTTAGT-A-CTAT---GTC-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACCTTAT-GGTAAGC-AAC------AGAC---A-AAGGTCGGCTCT-ATTCCGGCCACTGTCTCT-ATCACACA-CCT-ATTT-TCTGT--C-TGAGTCG---ACCAGC-AAGA-ATGCTGACACTAAG-----------ACGAGG-AACTA---AA-GA-GTGGA-GCTCT-ATTCGGG---CGCTGAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|7 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaGCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCTTAAAC-AATATA-ATGT--AGTT-CG-CC--GCTTT--G-GGTTGTTT---C--AA-AATA--TTGAATATGTTC--GCAA-TCT-TGATTT-AGATTT-A-TAC---------TTGATCCGTTA--TT-A--AA--TATTTCCCTAT-----GGGG----TT--AATCCTGAATGA----AATC-AA-CACT----AT---ATCT-AAAATG--TGAACC-ACACAAT-TTATG-ATCCAT--AGCTAATAT--CAAACA-CAGATGC--AGGTCGGCT-T-ATTCGGGC-A-CGGT-CT-T-G--TCA-T-AG-T--ACCTA-TG--TCCTAACAAAAGTTAGT-A-CTAT---G-G-CTTGG-A-CGAC-CGA-C--TG-GAATGC--T-AC-CCAT-GG-AAAT-TAC--A---A-AGCATATTAGATC
gi|8 : tcA-AAATA---AAGCA-GTGGACGCTCT-ATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTATTG---TATTTATATC--AATTAGCCTA--TTGTAAG-ATGTTCACATTATACCAGACAGCTT------AGACGGAGACTTGAAAAA-CTGAACAA-GCTCTGA-GCACGCCTTATATACCT----CTTACGGA--G-A-GTCCACTGTT-CGCTCT-AAACGAAGTGT------TTGG-GTTAGTCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAG-AAAAAA-GTCCTATC-AACAT
gi|9 : tcTTC--TCAA-TCACTGATC--AGATTT-A-C-T---------GT----C-A-A--TTC--TAA--T--TGCCCTA-CTAAGGGGG----TGGAAATC--AAGTAA-ATGAATC-G-------------CT-T-----AATAATTGA------ACAAT-TT-------CCTGAAATAAATAG-GC------CAGTACC--AGGTCAGCTTC-ACTCGGGCCA-CTAT-CCCT-G--ATA-CTAGCT--AT-TC-T---CCCTAAC
Alignments
lowQualScore : 1 11 22 3333 1111 11 111 22222 1 11 222222222 1111 11 11111 11111 2222222222 111 222222 1 222 1111 22222222 3333333333333333 1111 333333333333 111 111111 1 2222 111111 77777777777777777777 1111 1 11 11 11 11 11 111 111111 1 5555555555555 11 1111 1 1 11111 888888888888888 1 1 11 1
lowQualScore : 1 2 33 11 6666 2 7777 8 88 3 11 6 6 99 111 99 33333 6 77 1 4 33 5 5 222222222 2222 5 77 66 66 0 0 2 777 44444 22 77777 4 5 3 6666666666 555 88 555555 5 999 77 1 66 1 0 66 4 5 5 2 5 5 66 5 5 1 77 5 5 111 1 6 2222 11111111 888 4 8 66 4 66 1 4 4 99 4 7777777777777777 5 5 0 0 5 88 66 5 8888 2 5 5 7 0 1 000000000000 0 0 5 555 5 4 5 2 5 888 5 1 5 111111 5 77 1 3 77 2222 5 666666 6 33333333333333333333 6 88 6 1 6 6 4444 3 99 8 8 8 33 66 0 0 8 1 8 0 11 0 11 8 1 8 99 666 6 2 6 0 5 777777 88 2 8 2 3 0 1 6666666666666 0 22 0 1111 0 3 77777 7 333333333333333 3 7 3 88 3
lowQualScore : . . .. .. .... . .... . .. . .. . . .. ... .. ..... . .. . . .. . . ......... .... . .. .. .. . . . ... ..... .. ..... . . . .......... ... .. ...... . ... .. . .. . . .. . . . . . . .. . . . .. . . ... . . .... ........ ... . . .. . .. . . . .. . ................ . . . . . .. .. . .... . . . . . . ............ . . . ... . . . . . ... . . . ...... . .. . . .. .... . ...... . .................... . .. . . . . .... . .. . . . .. .. . . . . . . .. . .. . . . .. ... . . . . . ...... .. . . . . . . ............. . .. . .... . . ..... . ............... . . . .. .
lowQualScore : 0 0 88 55 0000 5 5555 0 88 8 00 7 7 22 777 22 88888 7 99 4 3 66 7 7 999999999 1111 7 99 11 99 4 1 5 888 00000 88 88888 4 0 4 4444444444 333 99 777777 7 666 99 9 44 4 1 99 5 0 0 2 0 0 99 7 7 4 99 7 7 444 4 2 1111 22222222 333 4 9 11 4 11 9 4 4 55 4 4444444444444444 0 0 5 1 0 44 99 0 4444 5 0 0 1 7 0 111111111111 1 7 0 666 0 4 0 5 0 888 7 4 7 777777 7 99 4 0 99 0000 7 777777 7 22222222222222222222 7 88 7 7 7 7 2222 3 22 0 0 0 22 22 8 8 0 4 0 8 00 8 00 0 4 0 00 111 7 5 7 8 6 444444 88 5 8 5 2 0 0 8888888888888 8 00 2 8888 0 3 77777 3 333333333333333 3 3 3 33 3
consensus : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( family-2129 ) : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|1 : GCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA---TGAACCAATATA-A-GTTGAGTTGCGGCC--GTTTTGTG-GGTT--TT---C--AACAATT--ATTAAT-TGTTC--GCAA-TCT-TGATTTTAGATTT-A-TAT---------TT----C-TTA--TTTACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--A--TGA-GTAAATC-AATCAAT----AT-CTATCA-AAAATGGATGA--C-A-ACAAG-TTA-GTCTTCCT--AACTAATAGTGCAAACAACAGAGGTCAAAGTCGGCTCTTATTCGGGCTA-CTGT-CTCT-G--TCA-C-AG-T--AC-TAAT---CCCTAACAAAAGTTAGT-GGCTAT---G-CTCTTGGTC-CGAC-CACTC--AA-GAATGC--TAACACTAT-GGTAAGC-TAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCA-TATCTCT-GTCACTCCTCCT-A-ATTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGTTAACACAAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATT-GGG---TGCTGAATTATTC-TACAGCCTTCCTTTA-CTTCTATTG---T--TTAT-TT--AATTATTTTT--TT---AGCATGTTCAC-TT-TACCA-ACAGC-T---------------------AAA-CTGAAT-GTGCTCTGATGC-CGCTTAATATA-CT----CTTACGGAATG-ATGTCCA-TGTTCCGCTC-AAAAAGGGGTGTTGGGTGTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATCAAACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCA--AAATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAGTAAAGCAATAAATA------T-CAACAATAAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|10 : ta--TATGTCCCTATAT---GAAG----TTCTG-TC--AA-TGA-ATAAACT-AAACAAT----A---TATGT-AATATAAATTAC-C-C-ACAAG-TTA-A-CTTCCC---------------AACAACATAGAC--ATATCGGCTCT-ATTTGAGCCA-CTAT-CTCT-G--T
gi|10 : AAC-AAC--AT--AGA------CATATCGGCTCT-ATTTGAGCCACTATCTCT-GTAA-----------------GG--C-TTGG-CTA--ACCACC-AGAT-GTGCT---ACTAAG-TAAG-GCAATACAAGG-GAATA---AA-CA-aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|11 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccTTT-TGTGGTT--CTTTCC--AACAATA--AA-AAT-TGTTT--GCAACTCTCTGTTT--AG-TTT-ATTAT---------TT----C-TTA--TTCAC-AA--TATT--CCTTTCT---GAGGGGTCTTTTAATC---AATGACGTGAATtatattc
gi|12 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttctGTAAAGACTTTTT--CCT--GTCA--TCAAACCAATATATA-AT-GAGTT-TGACC--GCTTT-TG-AGTT--TT---C--AACAATA--AC-GAT-TATTC--GCAA-TCTCTGATT--AGATTT-A-CAT---------TT----C-TTA--TTCACT-A--CATTTCCCTGTCT---CGGG-----TTTAATC---AATGA-GTGAATA-AAAtga
gi|13 : atATTC-TCAAGTCTTCCTTTA-ATTCTATTGACGTA-TTAT-TT--AATTA-CCTC--T----AG-ATGTTAAC-T--CACCA-ACAAC-TTAACTGAGACT-------GAAAAA-CTGAAA-G-GCTTTGATGC-CGCTTTATATA-CT----CTTA-GGA--
gi|14 : A-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTT-TCAAGTTTTCCTTTA-ATTCTATTG---TA-TTAT-CT--AATAA-CATTTATT---AT-ATGTT
gi|15 : ACATTACC-ACGCCTCCG--TA-CATTCGTCCCGAATGAAAACACATTCATTATTTTT-TAaatt
gi|16 : AGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC-CAC-C--TG-GAATGC--TAACCCTAT-G
gi|17 : ACTACCCACGCCTCTGTATA-CATGCGTCCCGA
gi|2 : T---GGGG----TTT-AATC--AA-TGA-GTGAATC-AAACAATTATAAT-CTATTACAAAAT-AATGA--CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCTTG--TCA-C-AA-T--AC-TA-TT--CCCTAACAAAAGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC--AC-C--AG-GAATGCCGTAACACTATTGGTAAGCCAACCAA---AAAG---AT-AGGTCGGCTCT-ATTCGGGC-ACTATCTCT-GTTACACCT----A-TTTCCTAC--C-TTGGTCGA---CCAGC-AAGA-ATGTTAAC-CAAAG-CG---------CAAGACAGAGATATAA-CA-GTGGA-G-TCT-ATTCGGG---TGCTGAGTTATTC-TCA-TTCTTCCTTAG-ATTTTATTG---T--TTAT-TT--AATTA-TCTT--T----AG-ATGGTCAC-TT-G--CA-ACAAC-TG-----AGACT-------GAAAAA-CTGAAC-G-GCTTTGATGC-CGTTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTT-GCTCTAAAAGGGGGTGTTGGGTGTTGG-GTCATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC---AAACATTGTC-TACATTTATTTACCATAATCATAATATG-ATGTTACAGCAATAAA-A---------------AAA----AC-CC-CTTG-TGTTTCATCTTAAAAGT-CCAAAGTC------------ATGCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATtgttt
gi|3 : -C-CTTGG-T-CGAC-CAC-C--AA-GAATGC--TAACACTAT-GGTAAGC-AAC--A----GAG---A-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACTCCTCCT-AATTTCCTAT--C-TTGGTCGA---CCAGC-AAGA-ATGTTAACACAAAGGCAAG-A-----CAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---TGCTGAATTATTC-TCAAGCCTTCCTTTA-CTTCTATTG---TA-TTAT-TT--AATTA-T-TT--TT---AG-ATGTTCAC-TT--ACCA-ACAGC-T------A---------------AA-CTGAAT-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTC-GCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-A-CATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGACAA-GCA--AA-TATTTTC-TACATTTATGTACCATAATCAAAATATG-AAAGTAAAGCAATAAA-AATTCAAC-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|4 : tga-GAGT--CGACTTGGCTTT-TT-GGTT--AT---CCAAACAATATTAT-AGT-TGTTTTAGCAAATCTCTGATT--AGATTTTA-TATCTCTGGTTTTT----C-TTACTTTCAC-AACTTTTTTGCCTACAT---GGG-------TTAATC--AAATGA-GTG-ATCAAAACAA-----ATACTATAC-TAAACG-ATAC--C-A-ACAATCTTA-A-CTTCCT--AACAAATAG-GCAAAAAAGAGAGGC--AGGTCGG-TCT-ATTCAG--CACCTGT-GTCT-G--TCATC-AG-T--AC-CA-TTCGCCGTAAC-AAAGTTAGTAA-CTATGTGG-C-CTAGG-A-CGAC-CCC-CATAG-GAATGC--T-ACCCTAT-GGT-AGC-AACTTAAACAGAG---AT-AGGTCGGCTCT-A-TCGGGCCACT-TCTCT-GTCACACCTCCT-A--TTCTTATAAC-TTGGTCGACCACCA---AAGA-ATGCT-ACACTATG-GAAGCA----AC-------AGA---GA-CAGGTCG--GCTCTAATTCGGC---CACT
gi|4 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgaAACAGAGAT--AGGTCGGCTCT-AT-CGGGCCA-CT-T-CTCT-G--TCA-C-ACCT--CC-TA-T---TCTTA--------TAA---------------CTTGG-T-CGAC-CAC-C--AAAGAATGC--TA-CACTAT-GG-AAGC-AAC--A----GAG---A-CAGGTCGGCTCTAATTC-GGCCACTATCTCTGGTC-CACCTCCT-A-TTTCCTAT--C-TTGGTCG---ACCAGTAAAGA-ATGTTatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|5 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagagtcgacttggctttttggttatccaaacaatattatagttgttttagcaaatctctgattagattttatatctctggtttttcttactttcacaacttttttgcctacatgggttaatcaaatgagtgatcaaaacaaatactatactaaacgataccaacaatcttaacttcctaacaaataggcaaaaaagagaggcaggtcggtctattcagcacctgtgtctgtcatcagtaccattcgccgtaacaaagttagtaactatgtggcctaggacgacccccataggaatgctaccctatggtagcaacttaC--AGGTCG-CT-T-ATTCG---CA-CTATACTCT-GAATCA-C-AC-TCGGT-TA-T---TCTAAACAAA--CTGG------A-----------GG-ATCGACATACAC--AG-AATTGC--TAACACTAT-GA----C-AAC--A----GAG---A-CAGGTCG-CTCT-ATTCG--CCACTATCTCT-GTCACACCTCCTTA-TTTAATAT--CATTGGTTGAG-ACCATC-AAGATATGCTAA-ACTAAG-CAAG-A-----CAA-A-AAAGATA-AA-CA--TA-A-G-----ATGCGAG---TG----------------GTCTTCCTTTA-ATTCTAAT----TA-CTAT-TTCTAATTA-CCTT--T----AG--TGTTCA---T-AGCTG-ACTG---------AGACAT------GAAAAAGCTGAAT-G-GCTCTGACGC-CACTTTATATA-CTAACCCTTA-GAA--GCA-GGTCA-T-TTCCTCTC---AAAGGCGTGTTAAGTC-----ATTATTCTAT---ATCAA-G-CATC--AAAACGTT-GA--TTACATAA-GCAAAACATCG-ATC-A-CATTACC-ACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGCA--AG---TTTTC--A-ATTTAT-TGCCATAATCGAAATATA-AAATTAAAGCAACAAA-A------TCC--CAACAAAA-TTACATACCTTG-AGCTTCATCTTCAA
gi|6 : aT--CCT--GTC-GC-CAAACCAATATA-A--T-GAGTT-CGACC--GCTTT-TG-GGGT--TT---C--AGCAATA--A--AAT-TATTT--GCAA-TCTCTGATT--AGAATT-A-TAT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG-----TTTAATC---AATGA-GTAAATC-AAACA------AT-TTATCC-AAAACGAATGAC-C-A-AAAAT-TTA-G-CTTCCT--AAATGATAG-GCAAACAAC
gi|6 : ttgtaacgagttttAACAAC-GTTAGT-A-CTAT---GTC-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACCTTAT-GGTAAGC-AAC------AGAC---A-AAGGTCGGCTCT-ATTCCGGCCACTGTCTCT-ATCACACA-CCT-A-TTTTCTGT--C-TGAGTCG---ACCAGC-AAGA-ATGCTGACACTAAG-----------ACGAGG-AACTA---AA-GA-GTGGA-GCTCT-ATTCGGG---CGCTGAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|7 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaGCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCTTAAAC-AATATA-ATGT--AGTT-CG-CC--GCTTT--G-GGTTGTTT---C--AA-AATA--TTGAATATGTTC--GCAA-TCT-TGATTT-AGATTT-A-TAC---------TTGATCCGTTA--TT-A--AA--TATTTCCCTAT-----GGGG----TT--AATCCTGAATGA----AATC-AA-CACT----AT---ATCT-AAAATG--TGAACC-ACACAAT-TTATG-ATCCAT--AGCTAATAT--CAAACA-CAGATGC--AGGTCGGCT-T-ATTCGGGC-A-CGGT-CT-T-G--TCA-T-AG-T--ACCTA-TG--TCCTAACAAAAGTTAGT-A-CTAT---G-G-CTTGG-A-CGAC-CGA-C--TG-GAATGC--T-AC-CCAT-GG-AAAT-TAC--A---A-AGCATATTAGATC
gi|8 : tcA-AAATA---AAGCA-GTGGACGCTCT-ATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTATTG---TATTTATATC--AATTAGCCTA--TTGTAAG-ATGTTCACATTATACCAGACAGCTT------AGACGGAGACTTGAAAAA-CTGAACAA-GCTCTGA-GCACGCCTTATATACCT----CTTACGGA--G-A-GTCCACTGTT-CGCTCT-AAACGAAGTGT------TTGG-GTTAGTCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAG-AAAAAA-GTCCTATC-AACAT
gi|9 : tcTTC--TCAA-TCACTGATC--AGATTT-A-C-T---------GT----C-A-A--TTC--TAA--T--TGCCCTA-CTAAGGGGG----TGGAAATC--AAGTAA-ATGAATC-G-------------CT-T-----AATAATTGA------ACAAT-TT-------CCTGAAATAAATAG-GC------CAGTACC--AGGTCAGCTTC-ACTCGGGCCA-CTAT-CCCT-G--ATA-CTAGCT--AT-TC-T---CCCTAAC
Alignments
lowQualScore : 1 11 22 3333 1111 11 111 22222 1 11 222222222 1111 11 11111 11111 2222222222 111 222222 1 222 1111 22222222 3333333333333333 1111 333333333333 111 111111 1 2222 111111 77777777777777777777 1111 1 11 11 11 11 11 111 111111 1 5555555555555 11 1111 1 1 11111 888888888888888 1 1 11 1
lowQualScore : 1 2 33 11 6666 2 7777 8 88 3 11 6 6 99 111 99 33333 6 77 1 4 33 5 5 222222222 2222 5 77 66 66 0 0 2 777 44444 22 77777 4 5 3 6666666666 555 88 555555 5 999 77 1 66 1 0 66 4 5 5 2 5 5 66 5 5 1 77 5 5 111 1 6 2222 11111111 888 4 8 66 4 66 1 4 4 99 4 7777777777777777 5 5 0 0 5 88 66 5 8888 2 5 5 7 0 1 000000000000 0 0 5 555 5 4 5 2 5 888 5 1 5 111111 5 77 1 3 77 2222 5 666666 6 33333333333333333333 6 88 6 1 6 6 4444 3 99 8 8 8 33 66 0 0 8 1 8 0 11 0 11 8 1 8 99 666 6 2 6 0 5 777777 88 2 8 2 3 0 1 6666666666666 0 22 0 1111 0 3 77777 7 333333333333333 3 7 3 88 3
lowQualScore : . . .. .. .... . .... . .. . .. . . .. ... .. ..... . .. . . .. . . ......... .... . .. .. .. . . . ... ..... .. ..... . . . .......... ... .. ...... . ... .. . .. . . .. . . . . . . .. . . . .. . . ... . . .... ........ ... . . .. . .. . . . .. . ................ . . . . . .. .. . .... . . . . . . ............ . . . ... . . . . . ... . . . ...... . .. . . .. .... . ...... . .................... . .. . . . . .... . .. . . . .. .. . . . . . . .. . .. . . . .. ... . . . . . ...... .. . . . . . . ............. . .. . .... . . ..... . ............... . . . .. .
lowQualScore : 0 0 88 55 0000 5 5555 0 88 8 00 7 7 22 777 22 88888 7 99 4 3 66 7 7 999999999 1111 7 99 11 99 4 1 5 888 00000 88 88888 4 0 4 4444444444 333 99 777777 7 666 99 9 44 4 1 99 5 0 0 2 0 0 99 7 7 4 99 7 7 444 4 2 1111 22222222 333 4 9 11 4 11 9 4 4 55 4 4444444444444444 0 0 5 1 0 44 99 0 4444 5 0 0 1 7 0 111111111111 1 7 0 666 0 4 0 5 0 888 7 4 7 777777 7 99 4 0 99 0000 7 777777 7 22222222222222222222 7 88 7 7 7 7 2222 3 22 0 0 0 22 22 8 8 0 4 0 8 00 8 00 0 4 0 00 111 7 5 7 8 6 444444 88 5 8 5 2 0 0 8888888888888 8 00 2 8888 0 3 77777 3 333333333333333 3 3 3 33 3
consensus : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( family-2129 ) : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|1 : GCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA---TGAACCAATATA-A-GTTGAGTTGCGGCC--GTTTTGTG-GGTT--TT---C--AACAATT--ATTAAT-TGTTC--GCAA-TCT-TGATTTTAGATTT-A-TAT---------TT----C-TTA--TTTACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--A--TGA-GTAAATC-AATCAAT----AT-CTATCA-AAAATGGATGA--C-A-ACAAG-TTA-GTCTTCCT--AACTAATAGTGCAAACAACAGAGGTCAAAGTCGGCTCTTATTCGGGCTA-CTGT-CTCT-G--TCA-C-AG-T--AC-TAAT---CCCTAACAAAAGTTAGT-GGCTAT---G-CTCTTGGTC-CGAC-CACTC--AA-GAATGC--TAACACTAT-GGTAAGC-TAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCA-TATCTCT-GTCACTCCTCCT-A-ATTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGTTAACACAAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATT-GGG---TGCTGAATTATTC-TACAGCCTTCCTTTA-CTTCTATTG---T--TTAT-TT--AATTATTTTT--TT---AGCATGTTCAC-TT-TACCA-ACAGC-T---------------------AAA-CTGAAT-GTGCTCTGATGC-CGCTTAATATA-CT----CTTACGGAATG-ATGTCCA-TGTTCCGCTC-AAAAAGGGGTGTTGGGTGTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATCAAACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCA--AAATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAGTAAAGCAATAAATA------T-CAACAATAAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|10 : ta--TATGTCCCTATAT---GAAG----TTCTG-TC--AA-TGA-ATAAACT-AAACAAT----A---TATGT-AATATAAATTAC-C-C-ACAAG-TTA-A-CTTCCC---------------AACAACATAGAC--ATATCGGCTCT-ATTTGAGCCA-CTAT-CTCT-G--T
gi|10 : AAC-AAC--AT--AGA------CATATCGGCTCT-ATTTGAGCCACTATCTCT-GTAA-----------------GG--C-TTGG-CTA--ACCACC-AGAT-GTGCT---ACTAAG-TAAG-GCAATACAAGG-GAATA---AA-CA-aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|11 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccTTT-TGTGGTT--CTTTCC--AACAATA--AA-AAT-TGTTT--GCAACTCTCTGTTT--AG-TTT-ATTAT---------TT----C-TTA--TTCAC-AA--TATT--CCTTTCT---GAGGGGTCTTTTAATC---AATGACGTGAATtatattc
gi|12 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttctGTAAAGACTTTTT--CCT--GTCA--TCAAACCAATATATA-AT-GAGTT-TGACC--GCTTT-TG-AGTT--TT---C--AACAATA--AC-GAT-TATTC--GCAA-TCTCTGATT--AGATTT-A-CAT---------TT----C-TTA--TTCACT-A--CATTTCCCTGTCT---CGGG-----TTTAATC---AATGA-GTGAATA-AAAtga
gi|13 : atATTC-TCAAGTCTTCCTTTA-ATTCTATTGACGTA-TTAT-TT--AATTA-CCTC--T----AG-ATGTTAAC-T--CACCA-ACAAC-TTAACTGAGACT-------GAAAAA-CTGAAA-G-GCTTTGATGC-CGCTTTATATA-CT----CTTA-GGA--
gi|14 : A-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTT-TCAAGTTTTCCTTTA-ATTCTATTG---TA-TTAT-CT--AATAA-CATTTATT---AT-ATGTT
gi|15 : ACATTACC-ACGCCTCCG--TA-CATTCGTCCCGAATGAAAACACATTCATTATTTTT-TAaatt
gi|16 : AGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC-CAC-C--TG-GAATGC--TAACCCTAT-G
gi|17 : ACTACCCACGCCTCTGTATA-CATGCGTCCCGA
gi|2 : T---GGGG----TTT-AATC--AA-TGA-GTGAATC-AAACAATTATAAT-CTATTACAAAAT-AATGA--CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCTTG--TCA-C-AA-T--AC-TA-TT--CCCTAACAAAAGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC--AC-C--AG-GAATGCCGTAACACTATTGGTAAGCCAACCAA---AAAG---AT-AGGTCGGCTCT-ATTCGGGC-ACTATCTCT-GTTACACCT----A-TTTCCTAC--C-TTGGTCGA---CCAGC-AAGA-ATGTTAAC-CAAAG-CG---------CAAGACAGAGATATAA-CA-GTGGA-G-TCT-ATTCGGG---TGCTGAGTTATTC-TCA-TTCTTCCTTAG-ATTTTATTG---T--TTAT-TT--AATTA-TCTT--T----AG-ATGGTCAC-TT-G--CA-ACAAC-TG-----AGACT-------GAAAAA-CTGAAC-G-GCTTTGATGC-CGTTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTT-GCTCTAAAAGGGGGTGTTGGGTGTTGG-GTCATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC---AAACATTGTC-TACATTTATTTACCATAATCATAATATG-ATGTTACAGCAATAAA-A---------------AAA----AC-CC-CTTG-TGTTTCATCTTAAAAGT-CCAAAGTC------------ATGCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATtgttt
gi|3 : -C-CTTGG-T-CGAC-CAC-C--AA-GAATGC--TAACACTAT-GGTAAGC-AAC--A----GAG---A-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACTCCTCCT-AATTTCCTAT--C-TTGGTCGA---CCAGC-AAGA-ATGTTAACACAAAGGCAAG-A-----CAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---TGCTGAATTATTC-TCAAGCCTTCCTTTA-CTTCTATTG---TA-TTAT-TT--AATTA-T-TT--TT---AG-ATGTTCAC-TT--ACCA-ACAGC-T------A---------------AA-CTGAAT-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTC-GCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-A-CATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGACAA-GCA--AA-TATTTTC-TACATTTATGTACCATAATCAAAATATG-AAAGTAAAGCAATAAA-AATTCAAC-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|4 : tga-GAGT--CGACTTGGCTTT-TT-GGTT--AT---CCAAACAATATTAT-AGT-TGTTTTAGCAAATCTCTGATT--AGATTTTA-TATCTCTGGTTTTT----C-TTACTTTCAC-AACTTTTTTGCCTACAT---GGG-------TTAATC--AAATGA-GTG-ATCAAAACAA-----ATACTATAC-TAAACG-ATAC--C-A-ACAATCTTA-A-CTTCCT--AACAAATAG-GCAAAAAAGAGAGGC--AGGTCGG-TCT-ATTCAG--CACCTGT-GTCT-G--TCATC-AG-T--AC-CA-TTCGCCGTAAC-AAAGTTAGTAA-CTATGTGG-C-CTAGG-A-CGAC-CCC-CATAG-GAATGC--T-ACCCTAT-GGT-AGC-AACTTAAACAGAG---AT-AGGTCGGCTCT-A-TCGGGCCACT-TCTCT-GTCACACCTCCT-A--TTCTTATAAC-TTGGTCGACCACCA---AAGA-ATGCT-ACACTATG-GAAGCA----AC-------AGA---GA-CAGGTCG--GCTCTAATTCGGC---CACT
gi|4 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgaAACAGAGAT--AGGTCGGCTCT-AT-CGGGCCA-CT-T-CTCT-G--TCA-C-ACCT--CC-TA-T---TCTTA--------TAA---------------CTTGG-T-CGAC-CAC-C--AAAGAATGC--TA-CACTAT-GG-AAGC-AAC--A----GAG---A-CAGGTCGGCTCTAATTC-GGCCACTATCTCTGGTC-CACCTCCT-A-TTTCCTAT--C-TTGGTCG---ACCAGTAAAGA-ATGTTatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|5 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagagtcgacttggctttttggttatccaaacaatattatagttgttttagcaaatctctgattagattttatatctctggtttttcttactttcacaacttttttgcctacatgggttaatcaaatgagtgatcaaaacaaatactatactaaacgataccaacaatcttaacttcctaacaaataggcaaaaaagagaggcaggtcggtctattcagcacctgtgtctgtcatcagtaccattcgccgtaacaaagttagtaactatgtggcctaggacgacccccataggaatgctaccctatggtagcaacttaC--AGGTCG-CT-T-ATTCG---CA-CTATACTCT-GAATCA-C-AC-TCGGT-TA-T---TCTAAACAAA--CTGG------A-----------GG-ATCGACATACAC--AG-AATTGC--TAACACTAT-GA----C-AAC--A----GAG---A-CAGGTCG-CTCT-ATTCG--CCACTATCTCT-GTCACACCTCCTTA-TTTAATAT--CATTGGTTGAG-ACCATC-AAGATATGCTAA-ACTAAG-CAAG-A-----CAA-A-AAAGATA-AA-CA--TA-A-G-----ATGCGAG---TG----------------GTCTTCCTTTA-ATTCTAAT----TA-CTAT-TTCTAATTA-CCTT--T----AG--TGTTCA---T-AGCTG-ACTG---------AGACAT------GAAAAAGCTGAAT-G-GCTCTGACGC-CACTTTATATA-CTAACCCTTA-GAA--GCA-GGTCA-T-TTCCTCTC---AAAGGCGTGTTAAGTC-----ATTATTCTAT---ATCAA-G-CATC--AAAACGTT-GA--TTACATAA-GCAAAACATCG-ATC-A-CATTACC-ACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGCA--AG---TTTTC--A-ATTTAT-TGCCATAATCGAAATATA-AAATTAAAGCAACAAA-A------TCC--CAACAAAA-TTACATACCTTG-AGCTTCATCTTCAA
gi|6 : aT--CCT--GTC-GC-CAAACCAATATA-A--T-GAGTT-CGACC--GCTTT-TG-GGGT--TT---C--AGCAATA--A--AAT-TATTT--GCAA-TCTCTGATT--AGAATT-A-TAT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG-----TTTAATC---AATGA-GTAAATC-AAACA------AT-TTATCC-AAAACGAATGAC-C-A-AAAAT-TTA-G-CTTCCT--AAATGATAG-GCAAACAAC
gi|6 : ttgtaacgagttttAACAAC-GTTAGT-A-CTAT---GTC-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACCTTAT-GGTAAGC-AAC------AGAC---A-AAGGTCGGCTCT-ATTCCGGCCACTGTCTCT-ATCACACA-CCT-A-TTTTCTGT--C-TGAGTCG---ACCAGC-AAGA-ATGCTGACACTAAG-----------ACGAGG-AACTA---AA-GA-GTGGA-GCTCT-ATTCGGG---CGCTGAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|7 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaGCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCTTAAAC-AATATA-ATGT--AGTT-CG-CC--GCTTT--G-GGTTGTTT---C--AA-AATA--TTGAATATGTTC--GCAA-TCT-TGATTT-AGATTT-A-TAC---------TTGATCCGTTA--TT-A--AA--TATTTCCCTAT-----GGGG----TT--AATCCTGAATGA----AATC-AA-CACT----AT---ATCT-AAAATG--TGAACC-ACACAAT-TTATG-ATCCAT--AGCTAATAT--CAAACA-CAGATGC--AGGTCGGCT-T-ATTCGGGC-A-CGGT-CT-T-G--TCA-T-AG-T--ACCTA-TG--TCCTAACAAAAGTTAGT-A-CTAT---G-G-CTTGG-A-CGAC-CGA-C--TG-GAATGC--T-AC-CCAT-GG-AAAT-TAC--A---A-AGCATATTAGATC
gi|8 : tcA-AAATA---AAGCA-GTGGACGCTCT-ATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTATTG---TATTTATATC--AATTAGCCTA--TTGTAAG-ATGTTCACATTATACCAGACAGCTT------AGACGGAGACTTGAAAAA-CTGAACAA-GCTCTGA-GCACGCCTTATATACCT----CTTACGGA--G-A-GTCCACTGTT-CGCTCT-AAACGAAGTGT------TTGG-GTTAGTCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAG-AAAAAA-GTCCTATC-AACAT
gi|9 : tcTTC--TCAA-TCACTGATC--AGATTT-A-C-T---------GT----C-A-A--TTC--TAA--T--TGCCCTA-CTAAGGGGG----TGGAAATC--AAGTAA-ATGAATC-G-------------CT-T-----AATAATTGA------ACAAT-TT-------CCTGAAATAAATAG-GC------CAGTACC--AGGTCAGCTTC-ACTCGGGCCA-CTAT-CCCT-G--ATA-CTAGCT--AT-TC-T---CCCTAAC
blockSeqs : G A . CG CGCT C TAA . T A TG . T GT TTC CA TTAT A TA C C T T T CTCTGGTTT GATC G CT CT CT A AAG GGTCT CT CTGAA C A A ATTATAATC TAC AA ACCAC C TG GA T G A . C . C A A T AA T T C CG C . TCG A A TAA TGTGGC AT A A AT A CG A C T TA C TTAAACAGAGAT A G T AT AA A ACCA C A T A T TAAGGCAATA C TAT G G C C A GAT C A T ACGTA A CT G C TA TGTA . ATTATA G TTAGACGGAGACTT G CA . T A C AACC C . C . C CC TA . A . CA AT A A C CT AA C T . C ATTCAT T C T C T . T AATTCAACC AG ATAC . . ATAT A TGGTCCATCTCTTGA . T . . .
blockSeqs : . . . AT C ATG . T A . . . . . . TTG . . A C . . . . . . . C . C . T TT AAA . . A AATAC GT GA CCC . A . A G A . C . . G . . . . . C . . . T A A TA TGGC A . . . . . A A . TA . AAAGCATATT . . . T . . AGA G . . A A GAAGCAA . TA . . . C . . . A . TAT . . . A . T . TCA . TTAACTGAGACT . A . T . . . . . . . . T TA . T . . . . G . G A C G . A AAA T C G C T . G ATCC A CC . . . A . . T . . .
blockSeqs : . . GC . A . T A . . . . . . AA . . . C . . . . . . . C . C . T TT AAG . . A CTAT AC AA CCA . G . T G A . C . . G . . . . . . . . . G A A TA TGGC A . . . . . A A . TA . CAAAAAGAT . . . T . . AA G . . A A GCAAGA . . . . . C . . . A . TA . . . C . T . TTG . TGAGACT . C . T . . . . . . . . C T . T . . . . C . . A C G . A AAA T . . C T . T A . TA .
blockSeqs : . . . . . . . . . AC . . . C . . . . . . . C . A . T TT AA . . A ATA CC A CCA . A . T G A . C . . A . . . . . . . . . . A A TA TGTC T . . . . . A C . T . ATAGAC . . . T . . A G . . G T CAAGA . . . . . C . . . A . TA . . . C . . . TTA . AGACAT . T . C . . . . . . . . C . . A . . . . A . . A . G . . AAG .
blockSeqs : . . . . . A . . . C . . . . . . . T . C . T TT AA . . A ATT CT G CA . G . A . . . T . . G . . . . . . . . . . . . TA TGG A . . . . . A A . A . AGAGAC . . . T . . A T . . . T CG . . . . . C . . . . . TA . . . C . . . TAG . TA . T . . . . . . . . . .
blockSeqs : . . . . . . . . . . . . C . . GA AA . . . C . G . . . . . . . . . . . A . . . . . . . . . . . . . . T . . . . . A A . A . AGAGAC . . . . . . A G . . . T A . . . . . . . . . . . T . . . . . . .
blockSeqs : . . . . T AA . . . . . . . . . . . . . . A . . . . . . C . . . AGAGAC . . . . . . A . . . . . . . . . . .
blockSeqs : . . . AA . A . . . . . . . . . AGACAA .
blockSeqCons : T* AT*** ** C* AA*** ATTA****** CCA*** G** G* ** TA** A** TA AGAGAC********** A*** CAAGA******* TA**** T*** TCG*** TTAGCGAGACT********* ** C* T* A** AAA*** T*
originalCons : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCACTAA--TATTTCCCTATCT---GGGG----TTTTAATC--AAATGA-GTGAATC-AAACAAT----AT-CTATCN-AAAATGAATGA--C-A-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AAC--A---AGAG---ATCAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA--ACCAGC-AAGA-ATGCTAACACNAAG-CAAG-A----ACAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TA-TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCAC-TT-NACCA-ACAGC-T------AGAC--------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTCCGCTCTAAAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATC-AACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCA--AAATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
finalCons : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATAAT---AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-A-TAT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG----TTTTAATCAA---TGA-GTGAATC-AAACAATTA------TATCN-AAAATGAATGACCA---ACAAT-TTAG--CTTCCT--AACTAATAGG-CAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGTA--CTAT---G-C-CTTGGA--CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTAAGC-AACAGAGAC----------AGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-A-TTTCCTAT--C-TTGGTCGA---CCAGC-AAGA-ATGCTAACACNAAGCAAGA-------CAAGA-AAAGA---AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTGTA----TTAT-TT--AATTA-CCTT--TT---AG-ATGTTCACTCG---CCA-ACAGCTTAGCGAGACT---------GAAAAA-CTGAAC-G-GCTCTGATGC-CGCTTTATATA-CT----CTTA-GGA--G-A-GTCCA-TGTTC-GCTCT-AAAAGGGGTGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAG-GGAAAA-ATC--ATCA--CATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGCAAA---TATTTTCT-ACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAAA-A------T-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Alignments
lowQualScore : 1 11 22 3333 1111 11 111 22222 1 11 222222222 1111 11111 11 111 11111111 111 1 222 1111 22222222 111 1 1 22222 111 222222222222 333333 666666666666666 1 1111 1 11 11 1 11 11 1 111 1 44444444444444 11 1111 1 1 11111 888888888888888 1 1 11 1
lowQualScore : 1 2 33 11 6666 2 7777 8 88 3 11 6 6 99 111 99 33333 6 77 1 4 33 5 5 222222222 2222 5 77 5 66 0 0 2 777 44444 22 00 4 4 88 111 77 5 99999999 555 0 77777 5 999 77 1 66 1 0 66 4 5 5 2 5 5 66 5 5 1 77 5 5 111 1 6 2222 11111111 888 4 8 66 4 66 1 4 4 9999 222 777 4 5 5 5 0 0 0 3 66 5 5 66 0 5 7 0 1 5 77 00000 222 1 66 5 4 5 2 5 888 5 1 5 000 5 5 5 77 000000000000 5 111111 2 6 222222222222222 6 2 3 1 6 6 4444 3 99 8 8 8 8 8 8 0 0 8 1 8 0 11 0 11 1 6 99 55 6 2 6 0 8 444 0 88 2 8 2 3 0 1 77777777777777 0 22 0 1111 0 3 77777 7 333333333333333 3 7 3 88 3
lowQualScore : . . .. .. .... . .... . .. . .. . . .. ... .. ..... . .. . . .. . . ......... .... . .. . .. . . . ... ..... .. .. . . .. ... .. . ........ ... . ..... . ... .. . .. . . .. . . . . . . .. . . . .. . . ... . . .... ........ ... . . .. . .. . . . .... ... ... . . . . . . . . .. . . .. . . . . . . .. ..... ... . .. . . . . . ... . . . ... . . . .. ............ . ...... . . ............... . . . . . . .... . .. . . . . . . . . . . . . .. . .. . . .. .. . . . . . ... . .. . . . . . . .............. . .. . .... . . ..... . ............... . . . .. .
lowQualScore : 0 0 88 55 0000 5 5555 0 88 8 00 7 7 22 777 22 88888 7 99 4 3 66 7 7 999999999 1111 7 99 7 99 4 1 5 888 00000 88 88 4 4 44 000 11 7 77777777 000 7 11111 7 666 99 9 44 4 1 99 5 0 0 2 0 0 99 7 7 4 99 7 7 444 4 2 1111 22222222 333 4 9 11 4 11 9 4 4 5555 222 888 4 0 0 0 5 1 0 4 99 0 0 99 0 0 1 7 0 7 99 00000 333 4 99 0 4 0 5 0 888 7 4 7 000 0 7 7 99 000000000000 7 333333 5 7 333333333333333 7 2 3 7 7 7 2222 3 22 0 0 0 0 0 0 8 8 0 4 0 8 00 8 00 4 0 00 88 7 5 7 6 0 000 8 88 5 8 5 2 0 0 88888888888888 8 00 2 8888 0 3 77777 3 333333333333333 3 3 3 33 3
consensus : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-AT-AT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG----TTTTAATCAA-TGA-GTGAA-TCAAA-CAAT-TA-TA-TCTA-----AAATGAATGA-CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTA--AGC---AAC---A-GAGA-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-ATTTCCTAT--C-TTGGTCG-A--CCAGC-AAGA-ATGCTAACACNAA-GC--AAG-----ACAAGAAAAGA--AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TATT-AT-TT--AATTA-CCTT--TT---AG-ATGTTCAC--T-TACCA-ACAGCT-A--C-G-AGAC-T-GAAAAA-CTGAACG-GCTCTGATGC-CGCTTTATATAC-T----CTTA-GGA--G-A-GTCCA-TGTT-CGCTCT-AAAAGGGG-TGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC-A---AATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAA------A-AT-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
Reference ( family-2129 ) : NNGCTTCGGATNGTAAAGGCCAGAT--CCTCGGTCAGCTCAAACCAATATA-A-GT-GAGTT-CGACC--GCTTT-TG-GGTT--TT---C--AACAATA--AT-AAT-TGTTC--GCAA-TCTCTGATT--AGATTT-AT-AT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG----TTTTAATCAA-TGA-GTGAA-TCAAA-CAAT-TA-TA-TCNA-----AAATGAATGA-CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCT-G--TCA-C-AG-T--AC-TA-T---CCCTAACAAAAGTTAGT-A-CTAT---G-C-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACACTAT-GGTA--AGC---AAC---A-GAGA-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACACCTCCT-ATTTCCTAT--C-TTGGTCG-A--CCAGC-AAGA-ATGCTAACACNAA-GC--AAG-----ACAAGAAAAGA--AA-CA-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTC-TCAAGTCTTCCTTTA-ATTCTATTG---TATT-AT-TT--AATTA-CCTT--TT---AG-ATGTTCAC--T-CGCCA-ACAGCTTAG-C-G-AGAC-T-GAAAAA-CTGAACG-GCTCTGATGC-CGCTTTATATAC-T----CTTA-GGA--G-A-GTCCA-TGTT-CGCTCT-AAAAGGGG-TGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC-A---AATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAANTAAAGCAATAA------A-AT-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|1 : GCTTCGGATTGTAAAGGCCAGACGACCTTGGTCA---TGAACCAATATA-A-GTTGAGTTGCGGCC--GTTTTGTG-GGTT--TT---C--AACAATT--ATTAAT-TGTTC--GCAA-TCT-TGATTTTAGATTT-AT-AT---------TT----C-TTA--TTTACTAA--TATTTCCCTATCT---GGGG----TTTTAATCA--TGA-GTAAA-TCAAT-CAATATC-TA-TCAA-----AAATGGATGA-C-A-ACAAG-TTA-GTCTTCCT--AACTAATAGTGCAAACAACAGAGGTCAAAGTCGGCTCTTATTCGGGCTA-CTGT-CTCT-G--TCA-C-AG-T--AC-TAAT---CCCTAACAAAAGTTAGT-GGCTAT---G-CTCTTGGTC-CGAC-CACTC--AA-GAATGC--TAACACTAT-GGTA--AGC---TAC---AAGAGATCAGGTCGGCTCT-ATTCGGGCCA-TATCTCT-GTCACTCCTCCT-AATTCCTAT--C-TTGGTCGAA--CCAGC-AAGA-ATGTTAACACAAA-GC--AAGA----ACAAGAAAAGA--AA-CA-GTGGA-GCTCT-ATT-GGG---TGCTGAATTATTC-TACAGCCTTCCTTTA-CTTCTATTG---T-TT-AT-TT--AATTATTTTT--TT---AGCATGTTCACT-T-TACCA-ACAGCT------------------AAA-CTGAATGTGCTCTGATGC-CGCTTAATATAC-T----CTTACGGAATG-ATGTCCA-TGTTCCGCTCA-AAAAGGGG-TGTTGGGTGTTGGTTTCATTCCATCATATCAATGTCATC--AAAACGTTTGA--TTACATAGGGAAAA-ATC--ATCAAACATTACCCACGCCTCCGGGTACCACTCG-CTCGAATGAC--AGCAA---AATATTTGCTTACATTTATGGA-CA-AATCAAAATATGAAAAGTAAAGCAATAA------ATAT-CAACAATAAAAGTCAC-TA-CTTGCTGCTTCATCTTAAAAGTCCCAAAGTCATATAATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGT-ATTTCCGTAATGTCAAT---------------TTTCCTTGTATGTCTTCT--GACACCTCTCTGGCGAACTCAGTTTTGAGTAAAACTTTACTCACACTTCAATAT
gi|10 : ta--TATGTCCCTATAT---GAAG----TTCTG-TCAA-TGA-ATAAA-CTAAA-CAA--TA-TA-TGTA-----ATATAAATTA-CCC-ACAAG-TTA-A-CTTCCC---------------AACAACATAGAC--ATATCGGCTCT-ATTTGAGCCA-CTAT-CTCT-G--T
gi|10 : --AAC---AAC---A-TAGA-CATATCGGCTCT-ATTTGAGCCACTATCTCT-GTAA----------------GG--C-TTGGCTA-A--CCACC-AGAT-GTGCT---ACTAA-GT--AAGGCAATACAAGGGAATA--AA-CA-aaggcttggctaaccaccagatgtgctactaagtaaggcaatacaagggaataaacatatattc
gi|11 : tatgtccctatatgaagttctgtcaatgaataaactaaacaatatatgtaatataaattacccacaagttaacttcccTTT-TGTGGTT--CTTTCC--AACAATA--AA-AAT-TGTTT--GCAACTCTCTGTTT--AG-TTT-ATTAT---------TT----C-TTA--TTCAC-AA--TATT--CCTTTCT---GAGGGGTCTTTTAATCAA-TGACGTGAA-Ttatattc
gi|12 : tagataatgacttttttcctgtcaactacattatatatgggatccgaagccttctGTAAAGACTTTTT--CCT--GTCA--TCAAACCAATATATA-AT-GAGTT-TGACC--GCTTT-TG-AGTT--TT---C--AACAATA--AC-GAT-TATTC--GCAA-TCTCTGATT--AGATTT-AC-AT---------TT----C-TTA--TTCAC-TA--CATTTCCCTGTCT---CGGG-----TTTAATCAA-TGA-GTGAA-TAAAA-tga
gi|13 : atATTC-TCAAGTCTTCCTTTA-ATTCTATTGACGTATT-AT-TT--AATTA-CC-T--CT---AG-ATGTTAAC--T-CACCA-ACAACTTAA-CTG-AGAC-T-GAAAAA-CTGAAAG-GCTTTGATGC-CGCTTTATATAC-T----CTTA-GGA--
gi|14 : A-GTGGA-GCTCT-ATTCGGG---CGCTGAATTATTT-TCAAGTTTTCCTTTA-ATTCTATTG---TATT-AT-CT--AATAA-CATTTATT---AT-ATGTT
gi|15 : --ACATTACC-ACGCCTCCG--TA-CATTCGTCCCGAATGAAAACAC-ATTCATTATTTTT-TAaatt
gi|16 : AGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC-CAC-C--TG-GAATGC--TAACCCTAT-G
gi|17 : ACTACCCACGCCTCTGTATA-CATGCGTCCCGA
gi|2 : T---GGGG----TTT-AATCAA-TGA-GTGAA-TCAAA-CAAT-TA-TAATCTATTACAAAAT-AATGA-CCA-ACAAT-TTA-G-CTTCCT--AACTAATAG-GCAAACAACAGAGGC--AGGTCGGCTCT-ATTCGGGCCA-CTGT-CTCTTG--TCA-C-AA-T--AC-TA-TT--CCCTAACAAAAGTTAGT-A-CTAT---GGC-CTTGG-A-CGAC--AC-C--AG-GAATGCCGTAACACTATTGGTA--AGCC--AACCAAA-AAGA-TAGGTCGGCTCT-ATTCGGGC-ACTATCTCT-GTTACACCT----ATTTCCTAC--C-TTGGTCG-A--CCAGC-AAGA-ATGTTAAC-CAAA-GCGCAAG-----ACA-GAGATAT--AA-CA-GTGGA-G-TCT-ATTCGGG---TGCTGAGTTATTC-TCA-TTCTTCCTTAG-ATTTTATTG---T-TT-AT-TT--AATTA-TCTT--T----AG-ATGGTCAC--T-TGC-A-ACAACT------G-AGAC-T-GAAAAA-CTGAACG-GCTTTGATGC-CGTTTTATATAC-T----CTTA-GGA--G-A-GTCCA-TGTT-TGCTCT-AAAAGGGGGTGTTGGGTGTTGG-GTCATTCCATCATAACAA-GTCATC--AAAACGTTTGA--TTGCATAGAAAAAAAATC--ATC--ACATTACCCACGCCTCCGGGTA-CATTCGTCTCGAATGACAAAGC-A---AACATTGTC-TACATTTATTTACCATAATCATAATATG-ATGTTACAGCAATAA------A-A---------AAA----AC-CC-CTTG-TGTTTCATCTTAAAAGT-CCAAAGTC------------ATGCACACTTAATACAAGATGAATTTCTCGGTTATAATCTCCGTAATATCAATTGGTCCATCTCTTGATTTCCTGAT-TGTCTTCTTGGATACCTCTCTGGCGAACTCAA-CTTGAGTAAA--CTCA-TCACACTTCAATATtgttt
gi|3 : -C-CTTGG-T-CGAC-CAC-C--AA-GAATGC--TAACACTAT-GGTA--AGC---AAC---A-GAGA-CAGGTCGGCTCT-ATTCGGGCCACTATCTCT-GTCACTCCTCCTAATTTCCTAT--C-TTGGTCG-A--CCAGC-AAGA-ATGTTAACACAAAGGC--AAG-----ACAAGAAAAGA--AA-CA-GTGGA-GCTCT-ATTCGGG---TGCTGAATTATTC-TCAAGCCTTCCTTTA-CTTCTATTG---TATT-AT-TT--AATTA--TTT--TT---AG-ATGTTCAC--T-TACCA-ACAGCT------------------AAA-CTGAATG-GCTCTGATGC-CGCTTTATATAC-T----CTTA-GGA--G-A-GTCCA-TGTT-CGCTCTAAAAAGGGG-TGTTGGGTGTTGG-GTCATTCCATCATATCAA-GTCATC--AAAACGTTTGA--TTACATAGGGAAAA-ATC--ATC--ACATTACCCACGCCTCCGGGTA-CACTCGTCTCGAATGAC-AAGC-A---AATATTTTC-TACATTTATGTACCATAATCAAAATATG-AAAGTAAAGCAATAAAAATTCA-AC-C--CAATAAAAGTCAC-TA-CTTG-TGCTTCATCTTAAAAGT-CCAAAGTCATAT-ATCAATAATGCACACTTAATACAAGATGAATTTCTCGGTTGTAATCTCCGTAATGTCAAT---------------TTTCCTGAT-TGTCTTCTTGGACACCTCTCTGGCGAACTCAG-TTTGAGTAAA--CTCA-TCACACTTCAATAT
gi|4 : tga-GAGT--CGACTTGGCTTT-TT-GGTT--AT---CCAAACAATATTAT-AGT-TGTTTTAGCAAATCTCTGATT--AGATTTTAT-ATCTCTGGTTTTT----C-TTACTTTCAC-AACTTTTTTGCCTACAT---GGG-------TTAATCAAATGA-GTGA--TCAAAACAAA-TACTA-TACT-----AAACGA-T-A-CCA-ACAATCTTA-A-CTTCCT--AACAAATAG-GCAAAAAAGAGAGGC--AGGTCGG-TCT-ATTCAG--CACCTGT-GTCT-G--TCATC-AG-T--AC-CA-TTCGCCGTAAC-AAAGTTAGTAA-CTATGTGG-C-CTAGG-A-CGAC-CCC-CATAG-GAATGC--T-ACCCTAT-GGTAGCAACTTAAAC---A-GAGA-TAGGTCGGCTCT-A-TCGGGCCACT-TCTCT-GTCACACCTCCT-A-TTCTTATAAC-TTGGTCG-A--CCACCAAAGA-ATGCT-ACACTAT-GG--AAG------C---AACAGA--GA-CAGGTCG--GCTCTAATTCGGC---CACT
gi|4 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgaAACAGAGAT--AGGTCGGCTCT-AT-CGGGCCA-CT-T-CTCT-G--TCA-C-ACCT--CC-TA-T---TCTTA--------TAA---------------CTTGG-T-CGAC-CAC-C--AAAGAATGC--TA-CACTAT-GG-A--AGC---AAC---A-GAGA-CAGGTCGGCTCTAATTC-GGCCACTATCTCTGGTC-CACCTCCT-ATTTCCTAT--C-TTGGTCG-A--CCAGTAAAGA-ATGTTatctctggtccacctcctatttcctatcttggtcgaccagtaaagaatgtt
gi|5 : ttgatgtaacagatttttttcccttgtccgctaataactattgttaacctcgagagtcgacttggctttttggttatccaaacaatattatagttgttttagcaaatctctgattagattttatatctctggtttttcttactttcacaacttttttgcctacatgggttaatcaaatgagtgatcaaaacaaatactatactaaacgataccaacaatcttaacttcctaacaaataggcaaaaaagagaggcaggtcggtctattcagcacctgtgtctgtcatcagtaccattcgccgtaacaaagttagtaactatgtggcctaggacgacccccataggaatgctaccctatggtagcaacttaC--AGGTCG-CT-T-ATTCG---CA-CTATACTCT-GAATCA-C-AC-TCGGT-TA-T---TCTAAACAAA--CTGG------A-----------GG-ATCGACATACAC--AG-AATTGC--TAACACTAT-GA------C---AAC---A-GAGA-CAGGTCG-CTCT-ATTCG--CCACTATCTCT-GTCACACCTCCTTATTTAATAT--CATTGGTTG-AGACCATC-AAGATATGCTAA-ACTAA-GC--AAG-----ACAA-AAAAGATAAA-CA--TA-A-G-----ATGCGAG---TG----------------GTCTTCCTTTA-ATTCTAAT----TACT-AT-TTCTAATTA-CCTT--T----AG--TGTTCAT------------AGCTGAC-T-G-AGACAT-GAAAAAGCTGAATG-GCTCTGACGC-CACTTTATATAC-TAACCCTTA-GAA--GCA-GGTCA-T-TT-C-CTCT-CAAAGGCG-TGTTAAGTC-----ATTATTCTAT---ATCAA-G-CATC--AAAACGTT-GA--TTACATAAGCAAAACATCG-ATC--ACATTACC-ACTCATCCGGGTA-TATTCGTCTCGAGTTACAAAGC-A---AGT--TTTC--A-ATTTAT-TGCCATAATCGAAATATA-AAATTAAAGCAACAA------A-ATCC--CAACAAAA-TTACATACCTTG-AGCTTCATCTTCAA
gi|6 : aT--CCT--GTC-GC-CAAACCAATATA-A--T-GAGTT-CGACC--GCTTT-TG-GGGT--TT---C--AGCAATA--A--AAT-TATTT--GCAA-TCTCTGATT--AGAATT-AT-AT---------TT----C-TTA--TTCAC-AA--TATTTCCCTATCT---GGGG-----TTTAATCAA-TGA-GTAAA-TCAAA-CAAT-T--TA-TCCA-----AAACGAATGA-CCA-AAAAT-TTA-G-CTTCCT--AAATGATAG-GCAAACAAC
gi|6 : ttgtaacgagttttAACAAC-GTTAGT-A-CTAT---GTC-CTTGG-A-CGAC-CAC-C--AG-GAATGC--TAACCTTAT-GGTA--AGC---AAC---A-GACA-AAGGTCGGCTCT-ATTCCGGCCACTGTCTCT-ATCACACA-CCT-ATTTTCTGT--C-TGAGTCG-A--CCAGC-AAGA-ATGCTGACACT-------AAG-----ACGAGGAACTA--AA-GA-GTGGA-GCTCT-ATTCGGG---CGCTGAgttagtactatgtccttggacgaccaccaggaatgctaaccttatggtaagcaacagacaaaggtcggctctattccggccactgtctctatcacacacctattttctgtctgagtcgaccagcaagaatgctgacactaagacgaggaactaaagagtggagctctattcgggcgctga
gi|7 : ttgtaacgagtttttcctgtcgccaaaccaatataatgagttcgaccgcttttggggtttcagcaataaaattatttgcaatctctgattagaattatatttcttattcacaatatttccctatctggggtttaatcaatgagtaaatcaaacaatttatccaaaacgaatgaccaaaaatttagcttcctaaatgataggcaGCTTCAAATGATAAAA-TCAGAT--CCTCGATCCGCTTAAAC-AATATA-ATGT--AGTT-CG-CC--GCTTT--G-GGTTGTTT---C--AA-AATA--TTGAATATGTTC--GCAA-TCT-TGATTT-AGATTT-AT-AC---------TTGATCCGTTA--TT-A--AA--TATTTCCCTAT-----GGGG----TT--AATCC--TGA-ATGAAATCAA--CA-C-TA-TA-TCTA-----AAATG--TGAACCACACAAT-TTATG-ATCCAT--AGCTAATAT--CAAACA-CAGATGC--AGGTCGGCT-T-ATTCGGGC-A-CGGT-CT-T-G--TCA-T-AG-T--ACCTA-TG--TCCTAACAAAAGTTAGT-A-CTAT---G-G-CTTGG-A-CGAC-CGA-C--TG-GAATGC--T-AC-CCAT-GG-A--AAT---TAC---A-AAG
gi|8 : tcAAAATA--AAGCA-GTGGACGCTCT-ATTCGGGGATCGCTGAATTATTCCTCAAGTCTTCCTTTATATTCTATTG---TATTTATATC--AATTAGCCTA--TTGTAAG-ATGTTCACATTATACCAGACAGCTTAGAC-GGAGAC-TTGAAAAA-CTGAACAAGCTCTGA-GCACGCCTTATATACCT----CTTACGGA--G-A-GTCCACTGTT-CGCTCT-AAACGAAG-TGT------TTGG-GTTAGTCCACCATAACAA-GTCTTTCAAAAACGTTTCAATTTATATAGAAAAAA-GTCCTATCA-ACATcatattagatc
gi|9 : tcTTC--TCAA-TCACTGATC--AGATTT-AC--T---------GT----C-A-A--TTC-T-AA--T--TGCCCTA-CTAAGGGGG----TGGAAATCAAGTAA-ATGAA-TCG---C--T-TA--A-T---------AAT---TGA-----ACAAT-TT-------CCTGAAATAAATAG-GC------CAGTACC--AGGTCAGCTTC-ACTCGGGCCA-CTAT-CCCT-G--ATA-CTAGCT--AT-TC-T---CCCTAAC