lowQualScore : 111111111111111111111111111111 1111111111111111111 1111111111111111111111111111111111 222222222222222222222222222222222222222222222 1111111111111111111111111111111111 222222222222222222222222222222222
lowQualScore : 4 55 4 66666666666666 4 1 4 222222222222222222222222222222 33 1 2222222222222222222 1 1 1 3333333 22 1 11111 1 4444444 1 444444 1 444 444 1 222222 3333 11 777777777777777777777777777 11 11 22 11 1 44 1 22 22 55555 33333333 1 0000000000000000000000000000000000 22 1 44444 1 666666666666666666666666 333333333333333 77777777 1 1 22222 555555555555555 1 2222 2222 111111111111111111111111111111111111111111111 1 1 11 333333333333333 5555555555555555555555555555555555 3333 11 2 11 11 11 11 1 22222 11 1 22222 1 3333 1111 11 22 2 2 3333333 444 1 1 222 1 99999999999999999999 66666666666666666666666666 11 1 22 22 1 33 2 22 1 3333333 22 2222 1 22222 333333 777777777777777777777777777777777 3 333 2222 333 2 44 1 22222 55555555555555 1
lowQualScore : 0 55 0 88888888888888 0 5 0 555555555555555555555555555555 66 2 2 55 5 5555555555555555555 5 5 5 4444444 00 3 77777 3 3333333 3 000000 7 6 444 7 000 3 7 222222 8 3333 0 11 8 8 0 0 8 1 0 333333333333333333333333333 3 7 2 33 44 88 88 3 77 3 00 00 6 33333 44444444 3 7777777777777777777777777777777777 22 6 3 33333 3 7 111111111111111111111111 55 333333333333333 8 55555555 5 0 2 0 00000 3 333333333333333 3 8888 2222 333333333333333333333333333333333333333333333 6 3 3 1 7 44 1 444444444444444 7777777777777777777777777777777777 4444 0 88 6 1 33 7 8 00 666 3 2 33 3 33 0 0 3 2 0 11111 88 3 22222 4 6 3 1111 8888 88 4 88 44 88 0 0 0000000 888 7 6 1 3 555 3 1 11111111111111111111 2 6 55555555555555555555555555 77 5 44 77 5 55 0 77 5 1111111 00 2222 3 7 7 99999 222222 555555555555555555555555555555555 6 2 0 7 555 5555 111 2 4 7 3 4 6 66 7 6 6 22222 3 9 3 55 88888888888888 0
lowQualScore : . .. . .............. . . . .............................. .. . . .. . ................... . . . ....... .. . ..... . ....... . ...... . . ... . ... . . ...... . .... . .. . . . . . . . ........................... . . . .. .. .. .. . .. . .. .. . ..... ........ . .................................. .. . . ..... . . ........................ .. ............... . ........ . . . . ..... . ............... . .... .... ............................................. . . . . . .. . ............... .................................. .... . .. . . .. . . .. ... . . .. . .. . . . . . ..... .. . ..... . . . .... .... .. . .. .. .. . . ....... ... . . . . ... . . .................... . . .......................... .. . .. .. . .. . .. . ....... .. .... . . . ..... ...... ................................. . . . . ... .... ... . . . . . . .. . . . ..... . . . .. .............. .
lowQualScore : 0 00 0 00000000000000 0 0 0 555555555555555555555555555555 00 5 5 00 0 5555555555555555555 5 0 5 3333333 77 3 00000 3 3333333 3 333333 3 0 000 3 333 3 3 444444 0 0000 8 00 0 0 8 8 0 4 8 888888888888888888888888888 0 0 5 88 77 33 33 3 00 3 00 77 7 00000 33333333 3 8888888888888888888888888888888888 88 7 3 77777 3 3 777777777777777777777777 22 555555555555555 8 55555555 0 0 5 0 88888 5 000000000000000 3 3333 7777 000000000000000000000000000000000000000000000 7 3 3 0 3 00 0 333333333333333 0000000000000000000000000000000000 3333 7 33 0 2 88 0 2 22 222 2 5 88 2 22 2 8 0 2 0 88888 33 3 77777 0 7 3 7777 7777 00 0 55 00 00 0 0 5555555 888 3 0 0 3 777 3 0 66666666666666666666 2 0 33333333333333333333333333 55 0 00 55 0 00 0 55 5 0000000 77 7777 3 3 3 00000 777777 555555555555555555555555555555555 7 3 7 3 000 0000 000 5 0 5 0 0 0 00 0 0 0 33333 2 2 2 88 88888888888888 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA-CATATNNTTNTATCNAAGATCATGCACTGTGGTTATTTGTCATTTANTTACAATGTAATAACCTGAAGGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATA--ATC-ACATTTGTA-TCAC-TTTGGAATTTAGAAGGG-AAAAAA-ATATAA-GAT--ATGGTGTA-TTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGC--AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT---A-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A----TATGGAAACATTTGTTATAA-TTTTTCA-CG-ACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCATT------GCGCTCTA-CATGATTTTGTCCATGAT--NA----TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ANTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------AC-------GAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATTG--TCAACAT-CTGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCANTGTTGCACG-CCGCT---ANGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGAC-TCGGTAAGCTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTANTTNATNTTTNNATTCTCTTTGTTATCCAATATGTNGATTTTCTACAAGATGACATACAT-TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC---------------CCCCCCCCCCN---------CCACCA----------ACTTTCNTCCGTCANCAGCAGAACAGAAAAATCCACCAAGGTTTTAAAATCTACCACGCCTTCCATTTAAACGAATATGCGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAGTTT-TCAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTCAAAA-TTTGTTAACAATGGTCAAAAAATTGCGTACTACAGCACCTACATGTTATAAGACNTTCATANCAGCAATTGTCCACGACCGAGCAGNANAAAAAAAATGTATTTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTTATGATAGAGTAGATCTAAG-AGT-TATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAATTC-GGTCAAACCTGGTCCTGGTC
Reference ( gi|2 ) : ACTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT-------T-------ACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATTCA--TTTGGAATTTAGAAGCG-AAAAAA-ATATAACGAT--ATGGTGTA-CTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGTG-AAAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT---T-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTG--A----TA-GGAAACATTTGTTATCA-TTTTTCATTG-ACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT------GGGCTC-A-CATGATTGTGTCCATGAT--T-----TACAAATC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------AT-------GAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATTGAGTCAACATCCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTC-TTTTGTTAT-CAATA--TGAA-TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA-----------------CCCTCTCCCCG---------CCACCA----------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAATG-ACC-CACT--CCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTCAAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCT-TATGTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAAAAAAAAAGAC-TAATTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAATTT-GGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA---TATACTTGTATCCA--ATCATGCACTGT-------TGTCATTTACTTACA-TGTAATAAC-TGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATTCA---TTGGAATTTAGAGGGGAAAAAAA-ATATGAAGA---ATGGTTAA-TTT----ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAAAAA--CTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-ACTG---A-GCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTA--AAGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGAT--CA----TACAAATC-A-GTTGAA-AGATTATTTTTCTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGGC--------------------TATTTTATGGACAATGAT-------GAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACA-TGAGTCAACATCCTGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAACTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTTTAA-----------------CCCCCCCCCCC---------CCCCC
gi|4 : CATATCATTCTATCAAAGAT-ATGCACTGTGGTTATTT-------AGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGCCAATA-------CAT--GCAATCACATTTGGAATTTAGAAG---AAACAA-AT-CAA-GAT--ATGGTGTA-TTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAATA--------------GAAATAAA-----------AAAAC--CCAAACC-AAACTGT--------TGTTTCCATCT-ATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT---GAGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A---TAG-AAT----A----T--GGAAACATTTGTcccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|3 : tTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGC-AATA--ATCAACATTTATA-TCATTTTTAGAATTT-GAAGAA-AAAAAATATATATCAATTCATGGTGTAGTTT----ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAAAA----T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTTT--AAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAA-GCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A----TATGGAAACATTTG-TACAA-TTTCCCA----ACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT------GTGCCT-A-CATGATTTTATCCATGAT--GA----TACAAACCAAGGTTGAAGTGA-TA-TTTTCTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTTAATTTT---------------AC-------GAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATTG-----ACATGCTGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTC-AATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGAC---------CTACGGCGACTCGTAAT-AGTCA----TATC-------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATA--TTGA-TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTCAAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCCCCCCCCCCCACAACCCCCCCCACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAATC-ACC-CGCC--CTATTT-AACGAATATACAAATATCTATATA-------AAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAACTT-------TCAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTCAAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACCTACA-GTT-T-AAACGTTCATAACAACAATTGTCCACA-TCGAGCAGCAAAAAAac
gi|15 : --ATTGTGTA-CTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAttatcattatgatagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|12 : GTGTA-CTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAACAATCCT-------AAAT-TGAT-TGACTGTTTCCATc
gi|7 : ATTAATAAATAGAA----TATGGAAACATTTGT-ATCA-TTTTTC--CA-ACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCA-T------GCGCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGATCA-ATTATTAT--AT-AAATATTAC-AT
gi|5 : aatTGCAGTG-TA-TTTTTTCTTGTTTTCATT------GCGCTA-AACATGATTTTGTCCATGAC--GA----TACAAAAC-AGGTTGAA-TGAT-------CTATTCA-------CTATGATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------ATTTGACACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TTGTTTTAA-----TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG--T----------------------ACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---
gi|16 : aTTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAtaa
gi|8 : -AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT
gi|10 : -TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAACCC-------------CCCTCCCCCTG---------CCACCA----------Aaattctttttgttatcaatata
gi|1 : -----------------CCCCCCCCCCC---------CCAC-A----------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC--GAGTTT--------------------------TGACGTAACGTCAAAAATTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCT-TATGTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAAATGTATTTATGA
gi|11 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaaccccccccccccccccccccccccccccccTATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGACtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|11 : TTGACGTAACGTCAAAA-TTTGTTAACAATGGgtaacgtcaaaatttgttaacaatgg
gi|13 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaACATTTTATGATAGAGTAGATCTAAG-AGTGTATT--------------GTTTGCTTTTGACGTTAGGTC--------------TAATTC-AGTCAAACCTGGTCCT
gi|1 : aTTTATGATAGAGTAGATCTAAGGAGTTTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAATTT-GGTCAAACCTGGTCCTGGTC
gi|3 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtaTTATGATAGAGTAGATTGAAA-GTT-TATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAATTT-GGTCAAACCTGGTCCTGGc
gi|14 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaTATTTCTAATACAATTTTGTT-G-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC
Alignments
lowQualScore : 11111111111111111111 11111111111111111111111111111111111111111111 1111111111111111111111111111111111 1111111111111111111111111111111
lowQualScore : 1 11 1 2 1 1 2 2 44444 22 222 2 11111111111111111111 1111111 11 1 1 1 3333333 22 11 44444444 222 1 11111 111 1111 22222222 111 55555555 1 1 11 1 11 1 11 11 222 11111 1 3333333333333333333333 11 1 44444 1 444444444 22222 22222222 22222222222 1 2222 1111 55555555555555555555555555555555555555555555 1 1 1 44444444444444 1111111111111111111111111111111111 11 11 111 11 111 11 1 222 1 1 22 11 2 2222222 333 2 1 1 111 1 444444444444 11 666666666666666666666666666 22 333 11 2222 11 11 1111 1 111 222222 0000000000000000000000000000000 1 1 333 22 2 1 111 2 11 33333333333333333333333333333333 1 222 44444444444444
lowQualScore : 5 88 5 0 3 2 5 5 0 3 0 66666 77 4 3 3 777 22 1 1 3 6 00000000000000000000 7 6 0 7 9999999 2 33 0 3 0 0 2222222 3 77 22 3 11111111 3 333 0 3 88888 444 6 3333 99 6 6 6 99999999 444 0 00000000 0 3 77 5 0 33 0 33 0 22 33 2 777 3 77777 0 2 0 8888888888888888888888 0 33 3 0 11111 0 3 000000000 3 88888 8 88 00000 0 6 8 0 44444444 1 8 8 99999 1 44444444444 5 8 0 1111 4444 88888888888888888888888888888888888888888888 2 0 0 3 55 99 0 11111111111111 0000000000000000000000000000000000 33 33 3 111 8 0 11 0 88 1 8 444 1 33 0 555 0 4 2 0 3 0 7 1 1 11 22 99 3 9999999 222 3 0 0 0 777 0 6 3 111111111111 11 1 666666666666666666666666666 77 6 44 111 0 99 7 9999 7 0 0 0 3 33 33 4444 0 3 3 3 777 222222 5555555555555555555555555555555 2 0 0 3 777 44 7 3 7 6 1 1 2 0 444 3 88 22222222222222222222222222222222 2 0 444 0 0 0 77777777777777 8
lowQualScore : . .. . . . . . . . . . ..... .. . . . ... .. . . . . .................... . . . . ....... . .. . . . . ....... . .. .. . ........ . ... . . ..... ... . .... .. . . . ........ ... . ........ . . .. . . .. . .. . .. .. . ... . ..... . . . ...................... . .. . . ..... . . ......... . ..... . .. ..... . . . . ........ . . . ..... . ........... . . . .... .... ............................................ . . . . .. .. . .............. .................................. .. .. . ... . . .. . .. . . ... . .. . ... . . . . . . . . . .. .. .. . ....... ... . . . . ... . . . ............ .. . ........................... .. . .. ... . .. . .... . . . . . .. .. .... . . . . ... ...... ............................... . . . . ... .. . . . . . . . . ... . .. ................................ . . ... . . . .............. .
lowQualScore : 0 55 5 0 0 5 5 0 0 0 0 00000 55 0 0 0 222 00 0 0 7 7 33333333333333333333 3 7 7 3 0000000 0 22 0 2 0 0 5555555 2 55 55 2 00000000 2 000 0 2 00000 222 8 3333 22 7 7 7 00000000 000 8 66666666 6 8 00 5 0 88 0 88 0 55 22 5 555 2 88888 0 5 2 7777777777777777777777 8 88 0 0 88888 0 2 000000000 8 22222 0 88 00000 8 0 0 6 88888888 4 0 0 44444 0 44444444444 6 0 0 2222 8888 22222222222222222222222222222222222222222222 5 0 0 2 88 88 0 88888888888888 8888888888888888888888888888888888 88 88 2 888 0 8 00 8 88 0 0 000 0 88 0 888 2 2 5 0 2 0 3 0 0 33 00 33 3 3333333 777 2 0 0 0 000 0 5 2 000000000000 00 0 666666666666666666666666666 77 7 33 333 7 77 3 3333 3 7 7 7 2 88 22 8888 0 2 2 2 555 222222 3333333333333333333333333333333 5 0 0 2 777 33 3 7 3 7 0 0 0 7 000 3 33 00000000000000000000000000000000 5 0 888 8 8 8 00000000000000 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT------TT------TACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGCAATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAACTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTTG--AGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------A-------CGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TC--AACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGAT-TTTATATTCTCTTTGTTAT-CAATAT-T-GA-TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAA-CTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCC--CCCCCCCCCA---------C-CA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAATN-ACCACGCC-TCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC--GAG-TT-TCAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCT-TATGTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAAAT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGT-TTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
Reference ( family-2126 ) : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTAC-ATATNNTTNTATCNAAGATCATGCACTGTGGTTATTTGTCATTTANTTACAATGTAATAACCTGAAGGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGCAATA--ATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGGG-AAAAAA-ATAT-A-A-GAT--ATGGTGTATTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAACTGAGC--AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT---AGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATAA-TTTTTCAC--GACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTCTA-CATGATTTTGTCCATGATNA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ANTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------A-------CGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TC--AACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCANTGTTGCACG-CCGCT---ANGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGA-CTCGGTAAGCTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTANTTNATNTTTNNATTCTCTTTGTTATCCAATATGTNGATTTTCTACAAGATGACATACAT-TTTTTGCGATATATATCTGTATTGTTC-AAA-CTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCC--CCCCCCNCCA---------C-CA-------------ACTTTCNTCCGTCANCAGCAGAACAGAAAAATCCACCAAGGTTTTAAAATCTACCACGCCTTCCATTTAAACGAATATGCGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAGTTT-TCAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTTAACAATGGTCAAAAAATTGCGTACTACAGCACCTACATGTTATAAGACNTTCATANCAGCAATTGTCCACGACCGAGCAGNANAAAAAAAATGTAT--TTATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACATTTTATGATAGAGTAGATCTAAG-AGT-T-ATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTT---ATATACTTGTATCCA--ATCATGCACTG-------TTGTCATTTACTTAC-ATGTAATAA-CTGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGCAATATTATC-ACATTTGTATT-CA----TTGGAATTTAGAGGGGAAAAAAA-ATATGA-A-GA---ATGGT-TAATTT---ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAA---AAACTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-ACTG---AGCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTAA-AGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGATCA------TACAAATC-A-GTTGAA-AGATTATTTTTCTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGGC--------------------TATTTTATGGACAATGA-------TGAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACATGAG--TC--AACATCC-TGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAA-CTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTT-TAAC------------CCCC--CCCCCCCCCC---------C-C
gi|1 : C------------CCCC--CCCCCCCCCC---------CACA-------------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC--GAG--------------------------TTTTGACGTAACGTCAAAAA-TTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCT-TATGTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAAATGTAT--TTATGAccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|1 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccTTTATGATAGAGTAGATCTAAGGAGT-TTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAA-TTTGGTCAAACCTGGTCCTGGTCtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|10 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgta-TTTTTGCGATATATATCTGTATTGTTC-AAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAAC------------CCCCCTCCCCCTGCCA---------C-CA-------------Ac
gi|11 : TATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGAC
gi|11 : TTGACGTAACGTC-AAAA-TTTGTTAACAATGGgtaacgtcaaaatttgttaacaatgg
gi|12 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaGTGTACTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAA---CAATC---C--TAAAT-TGAT-TGACTGTTTCCAT
gi|13 : ACATTTTATGATAGAGTAGATCTAAG-AGT----------GTA-----TTGTTTGCTTTTGACGTTAGGTC--------------TAA-TTCAGTCAAACCTGGTCCT
gi|14 : a-T-ATTTCTAATACAATTTTG-TTG-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
gi|15 : atagaagtaactga--ATTGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAa
gi|16 : TTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAc
gi|2 : CTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT--------------TACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGCAATATTATC-ACATTTGTA-TTCA---TTTGGAATTTAGAAGCG-AAAAAA-ATAT-A-ACGAT--ATGGTGTACTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAACTGAGTG-AAAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT---TGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATT-G-A---TA-GGAAACATTTGTTATCA-TTTTTCATT-GACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT-GG-----GCTC-A-CATGATTGTGTCCATGATT-------TACAAATC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------A-------TGAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATT-GAGTC--AACAT-CCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGAT-TTTATATTCT-TTTGTTAT-CAATAT---GAATTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAA-CTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA--------------CCCT--CTCCCCGCCA---------C-CA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAATGACCCAC----TCCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTC-AAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCT-TATGTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAAAAAAAAAGAC-TAA--TTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGT-ATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGTC
gi|3 : aTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGCAATA--ATCAACATTTATA-T-CATT-TTTAGAATTT-GAAGAA-AAAAAATATAT-ATC-AATTCATGGTGTAGTTT---ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAA---AA--T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTT--TAAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAAGCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A---TATGGAAACATTTG-TACAA-TTTCCCA----ACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT-GT-----GC-CTA-CATGATTTTATCCATGATGA------TACAAACCAAGGTTGAAGTGA-TA-TTTTCTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTTAATTTT---------------A-------CGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATT-G-------ACATGC-TGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCA-TTCAATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGA-C--------CTACGGCGACTCGTAAT-AGTCATATC-----------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATA--TTGA-TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTC-AAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCC--CCCCCCCCCACAACCCCCCC-CACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAATC-ACC-CGCC--CTATTT-AACGAATATACAAATATCTAT-----AT--AAAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAAC------TT-TCAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTC-AAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACCTACA-GTT-TAA-ACGTTCATAACAACAATTGTCCAC-ATCGAGCAGC----AAAAAAT-TATCATTATGA
gi|3 : TTATGATAGAGTAGAT-TGAA-AGT-TTATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGtagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|4 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaC-ATATCATTCTATCAAAGAT-ATGCACTGTGGTTATTT-------AGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGC--CA--AT--ACAT--GCAAT-CA-CATTTGGAATTTAGAAG---AAACAA-AT-C-A-A-GAT--ATGGTGTATTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAAT--------------AGAAATAAA---------AAAACCCAAAC----C--AAACTGT--------TGTTTCCATC-TATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTTG--AGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A----------TAGAA---TATGGAAACATTTGT
gi|5 : tATGCAGTG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTAAA-CATGATTTTGTCCATGACGA------TACAAAAC-AGGTTGAA-TGAT-------CTATTCA-------CTATGATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------ATTTGACACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TT-G--TTTTAA------TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG------------------------TACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---ac
gi|7 : ATTAATAAATAG-AA--TATGGAAACATTTGT-ATCA-TTTTTC-C--AACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCAT--GC-----GCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGATCA-ATTATTAT--AT-AAATATTAC-ATtaa
gi|8 : aat-AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC
Alignments
lowQualScore : 111111111111111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 11 1 1 1 1 1 1 22222 11 22 22 666666666666 1 1111111 11 1 1 1 3333333 1 11 11 111 333 222 1 11111 111 1111 22222222 444444444444 1 11 1 11 1 11 11 1111 11111 1 3333333333333333333333 11 1 2222 1 444444444 22222 2222222 11111 222222222 1 2222 1111 666666666666666666666666666666666666 1 1 1 444444444444 1111111111111111111111111111111111 11 11 111 11 111 11 1 11 1 1 1111 1111111 11 1 1 11 333 1 111 1 444444444444 11 6666666666666666666666666 1 11 1 3333333 11 11 1111 1 111 222222 999999999999999999999999999999 1 1 222 1 1 1 111 1111 11 1 44444444444444
lowQualScore : 5 88 5 5 1 1 5 5 5 1 5 66666 88 1 1 1 00 00 6 555555555555 3 7 6 7 9999999 2 33 0 3 0 0 2222222 0 66 22 3 0 111 999 3 111 0 3 88888 444 1 3333 99 6 6 6 99999999 222222222222 0 3 77 66 0 33 0 33 0 22 33 2 3 7777 3 77777 0 2 0 8888888888888888888888 0 33 1 0 9999 0 3 000000000 3 88888 8 88 00000 0 6 8 0 3333333 1 8 8 44444 444444444 8 5 8 0 1111 4444 777777777777777777777777777777777777 2 0 0 3 55 99 0 111111111111 0000000000000000000000000000000000 33 33 3 111 8 0 11 0 88 0 8 444 1 33 0 11 0 0 2 0 3 0 5555 2 7777777 77 33 0 0 88 000 3 9 0 777 0 6 3 111111111111 11 8888888888888888888888888 6 6 3 88 3 1 7777777 7 0 0 3 33 33 4444 0 3 3 3 777 222222 333333333333333333333333333333 2 0 0 3 333 7 3 3 7 6 2 999 3333 88 2 0 3 0 5 0 0 77777777777777 8
lowQualScore : . .. . . . . . . . . . ..... .. . . . .. .. . ............ . . . . ....... . .. . . . . ....... . .. .. . . ... ... . ... . . ..... ... . .... .. . . . ........ ............ . . .. .. . .. . .. . .. .. . . .... . ..... . . . ...................... . .. . . .... . . ......... . ..... . .. ..... . . . . ....... . . . ..... ......... . . . . .... .... .................................... . . . . .. .. . ............ .................................. .. .. . ... . . .. . .. . . ... . .. . .. . . . . . . .... . ....... .. .. . . .. ... . . . ... . . . ............ .. ......................... . . . .. . . ....... . . . . .. .. .... . . . . ... ...... .............................. . . . . ... . . . . . . ... .... .. . . . . . . . .............. .
lowQualScore : 0 55 5 5 0 0 5 0 5 0 5 55555 55 0 0 0 00 00 7 000000000000 3 3 7 3 0000000 0 22 0 2 0 0 5555555 0 22 55 2 2 000 000 2 000 0 2 00000 222 0 3333 22 7 7 7 00000000 666666666666 6 8 00 55 0 88 0 88 0 55 22 5 2 2222 2 88888 0 5 2 7777777777777777777777 8 88 0 0 2222 0 2 000000000 8 22222 0 88 00000 8 0 0 6 8888888 4 0 0 22222 666666666 2 6 0 0 2222 8888 222222222222222222222222222222222222 5 0 0 2 88 88 0 888888888888 8888888888888888888888888888888888 88 88 2 888 0 8 00 8 88 6 0 000 2 88 0 22 2 8 5 0 2 0 2222 5 8888888 00 88 0 0 33 777 2 8 0 000 0 5 2 000000000000 00 0000000000000000000000000 7 7 3 33 3 0 0000000 3 7 7 2 88 22 8888 0 2 2 2 555 222222 666666666666666666666666666666 5 0 0 2 333 3 3 3 3 7 0 777 7777 33 5 0 0 8 6 8 8 00000000000000 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------TATTT-AC--------ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC--GA-TTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
Reference ( family-2126 ) : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTCTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACCACGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC--GAGTTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAT-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTTTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA---TATACTTGTATCCA--ATCATGCACTGT-----TGTCATTTACTTACA-TGTAATAAC-TGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATT-CA----TTGGAATTTAGAGGGGAAAAAAA-ATATGA-A-GA---ATGGT-TAATTT---ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAAAAA--CTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-AC-T--GAGCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTAA-AGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGATCA------TACAAATC-A-GTTGAA-AGATTATTTTTCTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGGC--------------------TATTTTATGGACAATGATGAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACATGAG--TCAACATCC-TGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAACTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTT-TAAC------------CCCCCCCCCCC--CCC---------CC
gi|1 : C------------CCCCCCCCCCC--CCA----------CA-------------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC--GA--------------------------GTTTTGACGTAACGTCAAAAA-TTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCTTAT-GTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAA-ATGTAT--TTATGAccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|1 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccTTTATGATAGAGTAGATCTAAGGAGTTTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAA-TTTGGTCAAACCTGGTCCTGGTCtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|10 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgta-TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAAC------------CCCCCTCCCCCTGCCA---------CCA-------------Ac
gi|11 : TATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGAC--G
gi|11 : TTGACGTAACGTC-AAAA-TTTGTTAACAATGGtaacgtcaaaatttgttaacaatgg
gi|12 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaGTGTACTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAACAATCCT-------AAAT-TGAT-TGACTGTTTCCAT
gi|13 : ACATTTTATGATAGAGTAGATCTAAG-AGTGTATT--------------GTTTGCTTTTGACGTTAGGTC--------------TAA-TTCAGTCAAACCTGGTCCT
gi|14 : aTATTTCTAATACAATTTTG-TTG-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
gi|15 : atagaagtaactga--ATTGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAa
gi|16 : TTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAc
gi|2 : CTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT-----T-------ACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-TTCA---TTTGGAATTTAGAAGCG-AAAAAA-ATAT-A-ACGAT--ATGGTGTACTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGTG-AAAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--T-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATT-G-A---TA-GGAAACATTTGTTATCA-TTTTTCATT-GACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT-GG-----GCTC-A-CATGATTGTGTCCATGATT-------TACAAATC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------T---------------ATGAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATT-GAGTCAACAT-CCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCT-TTTGTTAT-CAATAT-GAA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA--------------CCCTCTCCCCG--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAA-TGACC-CA--CTCCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTC-AAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAT-GTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAA-AAAAAAAGAC-TAA--TTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGTC
gi|3 : aTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGC-AATA--ATCAACATTTATA-T-CATT-TTTAGAATTT-GAAGAA-AAAAAATATAT-ATC-AATTCATGGTGTAGTTT---ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAAAA----T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTT--TAAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAAGCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A---TATGGAAACATTTG-TACAA-TTTCCC----AACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT-GT-----GC-CTA-CATGATTTTATCCATGATGA------TACAAACCAAGGTTGAAGTGA-TA-TTTTCTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTTAATTTT---------------ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATT-G-----ACATGC-TGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCA-TTCAATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGAC---------CTACGGCGACTCGTAAT-AGTCATATC-----------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTCAAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCCCCCCCCC--CCACAACCCCCCCCACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TCACC-CGC-C-CTATTT-AACGAATATACAAATATCTAT-----AT--AAAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAAC-----TTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTC-AAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACC-TACAGTT-TAA-ACGTTCATAACAACAATTGTCCAC-ATCGAGCAG----CAAAAA-AT-TATCATTATGA
gi|3 : TTATGATAGAGTAGAT-TGAA-AGTTTATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGtagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|4 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaC-ATATCATTCTATCAAAGAT-ATGCACTGTGGTTAT-----TTAGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGCCAATAC-AT--GCA-----A-T-CA-CATTTGGAATTTAGAAG---AAACAA-AT-C-A-A-GAT--ATGGTGTATTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAATA--------------GAAATAAA-----------AAAAC--CCAAACC-AAACTGT--------TGTTTCCATCT-ATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A----------TAGAA---TATGGAAACATTTGT
gi|5 : tATGCAGTG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTAAA-CATGATTTTGTCCATGACGA------TACAAAAC-AGGTTGAA-TGA-------TCTATTC-------ACTATGATTC-AGTAT----AGAAAGA-T--ACTGCGGC--------------------TATTTGAC--------ACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TT-GTTTTAA------TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG------------------------TACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---ac
gi|7 : ATTAATAAATAG-AA--TATGGAAACATTTGT-ATCA-TTTTTC--C-AACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCAT--GC-----GCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGATCA-ATTATTAT--AT-AAATATTAC-ATtaa
gi|8 : aat-AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT-----------AAT-----------------TCTTTTTGTTAT-CAATAT-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC
Alignments
lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 11 1 1 1 1 1 1 22222 11 22 22 666666666666 1 1111111 11 1 1 1 3333333 1 11 11 111 333 222 1 11111 111 1111 22222222 444444444444 1 11 1 11 1 11 11 1111 11111 1 3333333333333333333333 11 1 2222 1 444444444 22222 2222222 11111 222222222 1 2222 1111 1 11111111111111111111111111 1 1 1 444444444444 1111111111111111111111111111111111 11 11 111 11 111 11 1 11 1 1 1111 1111111 1 1 1 11 333 1 111 1 444444444444 11 66666666666666666666666666 1 11 1 2222222 11 11 1111 1 111 222222 888888888888888888888888888888 1 1 222 11 1 1 111 1111 11 1 44444444444444
lowQualScore : 5 88 5 5 1 1 5 5 5 1 5 66666 88 1 1 1 00 00 6 555555555555 3 7 6 7 9999999 2 33 0 3 0 0 2222222 0 66 22 3 0 111 999 3 111 0 3 88888 444 1 3333 99 6 6 6 99999999 222222222222 0 3 77 66 0 33 0 33 0 22 33 2 3 7777 3 77777 0 2 0 8888888888888888888888 0 33 1 0 9999 0 3 000000000 3 88888 8 88 00000 0 6 8 0 3333333 1 8 8 44444 444444444 8 5 8 0 1111 4444 0 55555555555555555555555555 0 2 0 0 3 55 99 0 111111111111 0000000000000000000000000000000000 33 33 3 111 8 0 11 0 88 0 8 444 1 33 0 11 0 0 2 0 3 0 5555 2 7777777 77 5 0 0 88 000 3 9 0 777 0 6 3 111111111111 11 33333333333333333333333333 6 6 3 88 3 1 6666666 7 0 0 3 33 33 4444 0 3 3 3 777 222222 999999999999999999999999999999 2 0 0 3 333 7 44 3 7 6 2 999 3333 88 2 0 1 0 5 0 0 77777777777777 8
lowQualScore : . .. . . . . . . . . . ..... .. . . . .. .. . ............ . . . . ....... . .. . . . . ....... . .. .. . . ... ... . ... . . ..... ... . .... .. . . . ........ ............ . . .. .. . .. . .. . .. .. . . .... . ..... . . . ...................... . .. . . .... . . ......... . ..... . .. ..... . . . . ....... . . . ..... ......... . . . . .... .... . .......................... . . . . . .. .. . ............ .................................. .. .. . ... . . .. . .. . . ... . .. . .. . . . . . . .... . ....... .. . . . .. ... . . . ... . . . ............ .. .......................... . . . .. . . ....... . . . . .. .. .... . . . . ... ...... .............................. . . . . ... . .. . . . . ... .... .. . . . . . . . .............. .
lowQualScore : 0 55 5 5 0 0 5 0 5 0 5 55555 55 0 0 0 00 00 7 000000000000 3 3 7 3 0000000 0 22 0 2 0 0 5555555 0 22 55 2 2 000 000 2 000 0 2 00000 222 0 3333 22 7 7 7 00000000 666666666666 6 8 00 55 0 88 0 88 0 55 22 5 2 2222 2 88888 0 5 2 7777777777777777777777 8 88 0 0 2222 0 2 000000000 8 22222 0 88 00000 8 0 0 6 8888888 4 0 0 22222 666666666 2 6 0 0 2222 8888 0 00000000000000000000000000 2 5 0 0 2 88 88 0 888888888888 8888888888888888888888888888888888 88 88 2 888 0 8 00 8 88 6 0 000 2 88 0 22 2 8 5 0 2 0 2222 5 8888888 00 5 0 0 33 777 2 8 0 000 0 5 2 000000000000 00 66666666666666666666666666 7 7 3 33 3 0 7777777 3 7 7 2 88 22 8888 0 2 2 2 555 222222 333333333333333333333333333333 5 0 0 2 333 3 00 3 3 7 0 777 7777 33 5 0 0 8 6 8 8 00000000000000 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
Reference ( family-2126 ) : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA---TATACTTGTATCCA--ATCATGCACTGT-----TGTCATTTACTTACA-TGTAATAAC-TGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATT-CA----TTGGAATTTAGAGGGGAAAAAAA-ATATGA-A-GA---ATGGT-TAATTT---ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAAAAA--CTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-AC-T--GAGCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTAA-AGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGATCA------TACAAATC-A-GTTGAA-AGATTATTTTTCTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGG-CTAT---------TTTATGGA----CAATGATGAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACATGAG--TCAACATCC-TGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAACTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTT-TAAC------------CCCCCCCCCCC--CCC---------CC
gi|1 : C------------CCCCCCCCCCC--CCC---------ACA-------------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC---GA-------------------------GTTTTGACGTAACGTCAAAAA-TTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCTTAT-GTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAA-ATGTAT--TTATGAccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|1 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaaccccccccccccccccccccccccccccTTTATGATAGAGTAGATCTAAGGAGTTTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAA-TTTGGTCAAACCTGGTCCTGGTCtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|10 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgta-TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAAC------------CCCCCTCCCCCTGCCA---------CCA-------------Ac
gi|11 : TATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGAC---G
gi|11 : TTGACGTAACGTC-AAAA-TTTGTTAACAATGGtaacgtcaaaatttgttaacaatgg
gi|12 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaGTGTACTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAACAATCCT-------AAAT-TGAT-TGACTGTTTCCAT
gi|13 : ACATTTTATGATAGAGTAGATCTAAG-AGTGTATT--------------GTTTGCTTTTGACGTTAGGTC--------------TAA-TTCAGTCAAACCTGGTCCT
gi|14 : aTATTTCTAATACAATTTTG-TTG-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
gi|15 : atagaagtaactga--ATTGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAa
gi|16 : TTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAc
gi|2 : CTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT-----T-------ACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-TTCA---TTTGGAATTTAGAAGCG-AAAAAA-ATAT-A-ACGAT--ATGGTGTACTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGTG-AAAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--T-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATT-G-A---TA-GGAAACATTTGTTATCA-TTTTTCATT-GACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT-GG-----GCTC-A-CATGATTGTGTCCATGATT-------TACAAATC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT----------------------------GAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATT-GAGTCAACAT-CCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTC-TTTTGTTAT-CAATAT-GAA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA--------------CCCTCTCCCCG--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAA-TGACC-CA--CTCCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTC-AAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAT-GTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAA-AAAAAAAGAC-TAA--TTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGTC
gi|3 : aTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGC-AATA--ATCAACATTTATA-T-CATT-TTTAGAATTT-GAAGAA-AAAAAATATAT-ATC-AATTCATGGTGTAGTTT---ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAAAA----T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTT--TAAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAAGCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A---TATGGAAACATTTG-TACAA-TTTCCC----AACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT-GT-----GC-CTA-CATGATTTTATCCATGATGA------TACAAACCAAGGTTGAAGTGA-TA-TTTTCTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTT-----AATTTT----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATT-G-----ACATGC-TGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCA-TTCAATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGAC---------CTACGGCGACTCGTAAT-AGTCATATC-----------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTCAAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCCCCCCCCC--CCACAACCCCCCCCACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TCACC-CGC-C-CTATTT-AACGAATATACAAATATCTAT-----AT--AAAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAAC-----TTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTC-AAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACC-TACAGTT-TAA-ACGTTCATAACAACAATTGTCCAC-ATCGAGCAG----CAAAAA-AT-TATCATTATGA
gi|3 : TTATGATAGAGTAGAT-TGAA-AGTTTATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGtagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|4 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaC-ATATCATTCTATCAAAGAT-ATGCACTGTGGTTAT-----TTAGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGCCAATAC-AT--GCA-----A-T-CA-CATTTGGAATTTAGAAG---AAACAA-AT-C-A-A-GAT--ATGGTGTATTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAATA--------------GAAATAAA-----------AAAAC--CCAAACC-AAACTGT--------TGTTTCCATCT-ATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A----------TAGAA---TATGGAAACATTTGT
gi|5 : tATGCAGTG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTAAA-CATGATTTTGTCCATGACGA------TACAAAAC-AGGTTGAA-TGA-------TCTATTC-------ACTATGATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TTG----A----C----ACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TT-GTTTTAA------TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG------------------------TACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---ac
gi|7 : ATTAATAAATAG-AA--TATGGAAACATTTGT-ATCA-TTTTTC--C-AACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCAT--GC-----GCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGATCA-ATTATTAT--AT-AAATATTAC-ATtaa
gi|8 : aat-AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT-----------AAT-----------------TCTTTTTGTTAT-CAATAT-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC
Alignments
lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 11 1 1 1 1 1 1 22222 11 22 22 666666666666 1 1111111 11 1 1 1 3333333 1 11 11 111 333 222 1 11111 111 1111 22222222 444444444444 1 11 1 11 1 11 11 1111 11111 1 3333333333333333333333 11 1 2222 1 444444444 22222 2222222 11111 222222222 1 2222 1111 1 11111111111111111111111111 1 1 1 444444444444 1111111111111111111111111111111111 11 11 111 11 111 11 1 11 1 1 1111 1111111 1 1 1 11 333 1 111 1 444444444444 11 66666666666666666666666666 1 11 1 2222222 11 11 1111 1 111 222222 888888888888888888888888888888 1 1 222 11 1 1 111 1111 11 1 44444444444444
lowQualScore : 5 88 5 5 1 1 5 5 5 1 5 66666 88 1 1 1 00 00 6 555555555555 3 7 6 7 9999999 2 33 0 3 0 0 2222222 0 66 22 3 0 111 999 3 111 0 3 88888 444 1 3333 99 6 6 6 99999999 222222222222 0 3 77 66 0 33 0 33 0 22 33 2 3 7777 3 77777 0 2 0 8888888888888888888888 0 33 1 0 9999 0 3 000000000 3 88888 8 88 00000 0 6 8 0 3333333 1 8 8 44444 444444444 8 5 8 0 1111 4444 0 55555555555555555555555555 0 2 0 0 3 55 99 0 111111111111 0000000000000000000000000000000000 33 33 3 111 8 0 11 0 88 0 8 444 1 33 0 11 0 0 2 0 3 0 5555 2 7777777 77 5 0 0 88 000 3 9 0 777 0 6 3 111111111111 11 33333333333333333333333333 6 6 3 88 3 1 6666666 7 0 0 3 33 33 4444 0 3 3 3 777 222222 999999999999999999999999999999 2 0 0 3 333 7 44 3 7 6 2 999 3333 88 2 0 1 0 5 0 0 77777777777777 8
lowQualScore : . .. . . . . . . . . . ..... .. . . . .. .. . ............ . . . . ....... . .. . . . . ....... . .. .. . . ... ... . ... . . ..... ... . .... .. . . . ........ ............ . . .. .. . .. . .. . .. .. . . .... . ..... . . . ...................... . .. . . .... . . ......... . ..... . .. ..... . . . . ....... . . . ..... ......... . . . . .... .... . .......................... . . . . . .. .. . ............ .................................. .. .. . ... . . .. . .. . . ... . .. . .. . . . . . . .... . ....... .. . . . .. ... . . . ... . . . ............ .. .......................... . . . .. . . ....... . . . . .. .. .... . . . . ... ...... .............................. . . . . ... . .. . . . . ... .... .. . . . . . . . .............. .
lowQualScore : 0 55 5 5 0 0 5 0 5 0 5 55555 55 0 0 0 00 00 7 000000000000 3 3 7 3 0000000 0 22 0 2 0 0 5555555 0 22 55 2 2 000 000 2 000 0 2 00000 222 0 3333 22 7 7 7 00000000 666666666666 6 8 00 55 0 88 0 88 0 55 22 5 2 2222 2 88888 0 5 2 7777777777777777777777 8 88 0 0 2222 0 2 000000000 8 22222 0 88 00000 8 0 0 6 8888888 4 0 0 22222 666666666 2 6 0 0 2222 8888 0 00000000000000000000000000 2 5 0 0 2 88 88 0 888888888888 8888888888888888888888888888888888 88 88 2 888 0 8 00 8 88 6 0 000 2 88 0 22 2 8 5 0 2 0 2222 5 8888888 00 5 0 0 33 777 2 8 0 000 0 5 2 000000000000 00 66666666666666666666666666 7 7 3 33 3 0 7777777 3 7 7 2 88 22 8888 0 2 2 2 555 222222 333333333333333333333333333333 5 0 0 2 333 3 00 3 3 7 0 777 7777 33 5 0 0 8 6 8 8 00000000000000 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
Reference ( family-2126 ) : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA---TATACTTGTATCCA--ATCATGCACTGT-----TGTCATTTACTTACA-TGTAATAAC-TGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATT-CA----TTGGAATTTAGAGGGGAAAAAAA-ATATGA-A-GA---ATGGT-TAATTT---ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAAAAA--CTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-AC-T--GAGCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTAA-AGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGATCA------TACAAATC-A-GTTGAA-AGATTATTTTTCTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGG-CTAT---------TTTATGGA----CAATGATGAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACATGAG--TCAACATCC-TGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAACTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTT-TAAC------------CCCCCCCCCCC--CCC---------CC
gi|1 : C------------CCCCCCCCCCC--CCC---------ACA-------------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC---GA-------------------------GTTTTGACGTAACGTCAAAAA-TTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCTTAT-GTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAA-ATGTAT--TTATGAccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|1 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaaccccccccccccccccccccccccccccTTTATGATAGAGTAGATCTAAGGAGTTTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAA-TTTGGTCAAACCTGGTCCTGGTCtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|10 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgta-TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAAC------------CCCCCTCCCCCTGCCA---------CCA-------------Ac
gi|11 : TATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGAC---G
gi|11 : TTGACGTAACGTC-AAAA-TTTGTTAACAATGGtaacgtcaaaatttgttaacaatgg
gi|12 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaGTGTACTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAACAATCCT-------AAAT-TGAT-TGACTGTTTCCAT
gi|13 : ACATTTTATGATAGAGTAGATCTAAG-AGTGTATT--------------GTTTGCTTTTGACGTTAGGTC--------------TAA-TTCAGTCAAACCTGGTCCT
gi|14 : aTATTTCTAATACAATTTTG-TTG-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
gi|15 : atagaagtaactga--ATTGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAa
gi|16 : TTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAc
gi|2 : CTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT-----T-------ACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-TTCA---TTTGGAATTTAGAAGCG-AAAAAA-ATAT-A-ACGAT--ATGGTGTACTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGTG-AAAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--T-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATT-G-A---TA-GGAAACATTTGTTATCA-TTTTTCATT-GACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT-GG-----GCTC-A-CATGATTGTGTCCATGATT-------TACAAATC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT----------------------------GAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATT-GAGTCAACAT-CCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTC-TTTTGTTAT-CAATAT-GAA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA--------------CCCTCTCCCCG--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAA-TGACC-CA--CTCCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTC-AAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAT-GTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAA-AAAAAAAGAC-TAA--TTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGTC
gi|3 : aTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGC-AATA--ATCAACATTTATA-T-CATT-TTTAGAATTT-GAAGAA-AAAAAATATAT-ATC-AATTCATGGTGTAGTTT---ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAAAA----T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTT--TAAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAAGCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A---TATGGAAACATTTG-TACAA-TTTCCC----AACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT-GT-----GC-CTA-CATGATTTTATCCATGATGA------TACAAACCAAGGTTGAAGTGA-TA-TTTTCTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTT-----AATTTT----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATT-G-----ACATGC-TGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCA-TTCAATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGAC---------CTACGGCGACTCGTAAT-AGTCATATC-----------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTCAAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCCCCCCCCC--CCACAACCCCCCCCACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TCACC-CGC-C-CTATTT-AACGAATATACAAATATCTAT-----AT--AAAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAAC-----TTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTC-AAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACC-TACAGTT-TAA-ACGTTCATAACAACAATTGTCCAC-ATCGAGCAG----CAAAAA-AT-TATCATTATGA
gi|3 : TTATGATAGAGTAGAT-TGAA-AGTTTATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGtagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|4 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaC-ATATCATTCTATCAAAGAT-ATGCACTGTGGTTAT-----TTAGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGCCAATAC-AT--GCA-----A-T-CA-CATTTGGAATTTAGAAG---AAACAA-AT-C-A-A-GAT--ATGGTGTATTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAATA--------------GAAATAAA-----------AAAAC--CCAAACC-AAACTGT--------TGTTTCCATCT-ATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A----------TAGAA---TATGGAAACATTTGT
gi|5 : tATGCAGTG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTAAA-CATGATTTTGTCCATGACGA------TACAAAAC-AGGTTGAA-TGA-------TCTATTC-------ACTATGATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TTG----A----C----ACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TT-GTTTTAA------TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG------------------------TACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---ac
gi|7 : ATTAATAAATAG-AA--TATGGAAACATTTGT-ATCA-TTTTTC--C-AACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCAT--GC-----GCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGATCA-ATTATTAT--AT-AAATATTAC-ATtaa
gi|8 : aat-AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT-----------AAT-----------------TCTTTTTGTTAT-CAATAT-
blockSeqs : . . . T G T . . T C T GTCTG AA A C G CC AG C GGTTATT . A C T AATACC T AG . T . . TAGGCCA C TT CA T TT TT A CG T A AAC TTC C CTAA . G T A . ACTGAGTGA A TA TT . . . TC . C A C T AAAA T TTT . G TAAATTAATAATTGA TT C . ATT A A TTATAATTA G AGCG . T . T . ATACATG T A G TTAT CCATCA C A G A TATA TAA C GTAGCACGCTTAATTTT G . . T GA CA . AGTCAACATCC TTTTGATTCATTGGCCA . . T T A . A C TAG A AC A CC G . T . TCTG C ATCGAT AT T . . . T T A . A . G A AACAACAACAAA TG ACAACCCCCCCCACCACCACCACACC C G . . . G CACT A A . T TCA . T T A . TTGCA TTGAATTTNNNNNNNNNNNNNNNNNNNNNN C . T T . T CA . A G A AA GAC CA C . G T . T
blockSeqs : C G . T . A C T GAAA C A . T . . . . C C T T CA A AA . A ATC T C T . . . . . CCCAAACCA A CA T . . . . . C A C T GA T TT . G AACTTTGAA T A . C . A . A AGTG . T . A . A C . . TCAA CAATCA C C . . . T . TTGAC G . . T G A . ACATGC TCA . . T T . . A . . T . . CC G . T . TTTG C TTTGAA TT . . . . . T T . A . A A . . ACCA . G . . . C CGCC . A . T T . T T A . T TTTCAAGAGGCTTTTGACGGCCC C . . T . . T . . . . . AT . C . G T . .
blockSeqs : AAA T A . . . . . . . . . T . . . . . AA T C T . . . . . ATCCT G T T . . . . . . . C T T . . . . TATAGAA T C . . . A . A GTG . T . T . A A . . TAT ATAAAT T A . . . T . . G . . . A T . TTTTAA CCA . . . T . . A . . A . . C G . . . . . . . . . . . . . . . G . . . ACCA . . . T . . T . . T . . . . . . T . . .
blockSeqs : G T . . . . . T . . . . . . . . . . C . . . TC . A . . . . . . . . . . . .
blockSeqs : T . . . . .
blockSeqCons : ** ******** ACT********* GCG** T* ***** TA*** T** ** A* **************
originalCons : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAA--CTGAGCG-AAAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATTA-TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
finalCons : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAAAAACT---------AAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACGCG--TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGATA---TTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCGT--ACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGTA-ATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC
Alignments
lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111
lowQualScore : 1 11 1 1 1 1 1 1 22222 11 22 22 666666666666 1 1111111 11 1 1 1 3333333 1 11 11 111 333 222 1 11111 111 1111 22222222 555555555555555555 1 1 11 1 11 1 11 11 1111 11111 1 3333333333333333333333 11 1 2222 1 444444444 11111 22222 2222222 4444444 222222222 1 2222 1111 1 11111111111111111111111111 1 1 1 444444444444 1111111111111111111111111111111111 11 11 111 11 111 11 1 11 1 1 1111 1111111 1 1 1 11 333 1 111 1 444444444444 11 66666666666666666666666666 1 11 1 2222222 11 11 1111 1 111 222222 888888888888888888888888888888 1 1 222 11 1 1 111 1111 11 1 44444444444444
lowQualScore : 5 88 5 5 1 1 5 5 5 1 5 66666 88 1 1 1 00 00 6 555555555555 3 7 6 7 9999999 2 33 0 3 0 0 2222222 0 66 22 3 0 111 999 3 111 0 3 88888 444 1 3333 99 6 6 6 99999999 111111111111111111 0 77 0 66 0 33 0 33 0 22 33 2 3 7777 3 77777 0 2 0 8888888888888888888888 0 33 1 0 9999 0 3 000000000 7 88888 8 88 00000 0 6 8 0 3333333 1 8 8 2222222 8 444444444 8 5 8 0 1111 4444 0 55555555555555555555555555 0 2 0 0 3 55 99 0 111111111111 0000000000000000000000000000000000 33 33 3 111 8 0 11 0 88 0 8 444 1 33 0 11 0 0 2 0 3 0 5555 2 7777777 77 5 0 0 88 000 3 9 0 777 0 6 3 111111111111 11 33333333333333333333333333 6 6 3 88 3 1 6666666 7 0 0 3 33 33 4444 0 3 3 3 777 222222 999999999999999999999999999999 2 0 0 3 333 7 44 3 7 6 2 999 3333 88 2 0 1 0 5 0 0 77777777777777 8
lowQualScore : . .. . . . . . . . . . ..... .. . . . .. .. . ............ . . . . ....... . .. . . . . ....... . .. .. . . ... ... . ... . . ..... ... . .... .. . . . ........ .................. . .. . .. . .. . .. . .. .. . . .... . ..... . . . ...................... . .. . . .... . . ......... . ..... . .. ..... . . . . ....... . . . ....... . ......... . . . . .... .... . .......................... . . . . . .. .. . ............ .................................. .. .. . ... . . .. . .. . . ... . .. . .. . . . . . . .... . ....... .. . . . .. ... . . . ... . . . ............ .. .......................... . . . .. . . ....... . . . . .. .. .... . . . . ... ...... .............................. . . . . ... . .. . . . . ... .... .. . . . . . . . .............. .
lowQualScore : 0 55 5 5 0 0 5 0 5 0 5 55555 55 0 0 0 00 00 7 000000000000 3 3 7 3 0000000 0 22 0 2 0 0 5555555 0 22 55 2 2 000 000 2 000 0 2 00000 222 0 3333 22 7 7 7 00000000 444444444444444444 6 00 8 55 0 88 0 88 0 55 22 5 2 2222 2 88888 0 5 2 7777777777777777777777 8 88 0 0 2222 0 2 000000000 0 66666 0 88 00000 8 0 0 6 8888888 4 0 0 6666666 0 666666666 2 6 0 0 2222 8888 0 00000000000000000000000000 2 5 0 0 2 88 88 0 888888888888 8888888888888888888888888888888888 88 88 2 888 0 8 00 8 88 6 0 000 2 88 0 22 2 8 5 0 2 0 2222 5 8888888 00 5 0 0 33 777 2 8 0 000 0 5 2 000000000000 00 66666666666666666666666666 7 7 3 33 3 0 7777777 3 7 7 2 88 22 8888 0 2 2 2 555 222222 333333333333333333333333333333 5 0 0 2 333 3 00 3 3 7 0 777 7777 33 5 0 0 8 6 8 8 00000000000000 0
consensus : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAA--CTGAGTGA-AAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATACAGCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGA-T--AT-TTT-CTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
Reference ( family-2126 ) : NCTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTGTAGNTANAATTTTGTTGTTGTTTTGCATTGTGAAANTGTTGGATAATTGTCTGTTTCATAATTNTCATANTTNTAC-ATATAATTCTATCCA-GATCATGCACTGT-----T-----TTACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ACGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-T-CA-C-TTTGGAATTTAGAAGNG-AAAAAA-ATAT-A-A-GAT--ATGGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAA--CT-------AAATATGACATGACTGTTTCCATCTTATTTC-TTTTTAG--ATCTAC-ATATATCTT--CAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATTAG-A---TATGGAAACATTTGTTATNA-TTTTTCATT-AACACCAGT-TTTACAC---------TTAATAC-GCG-TA-TTTTTTCTTGTTTTCGTT-GC-----GCTCTA-CATGATTTTGTCCATGATGA------TACAAACC-AGGTTGAA-TGA-T--A--TTT-CTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TT-----A----C----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATACTTCAGAAGTCACATT-G--TCAACAT-C-TGCTTTG---------T--------------CA--------CCGATAAAC--TCTTTTTAGCGA--GTTAATAAGCATTTCAATCG--TACATACATCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTGCACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCATATCTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTCTTTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAGATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACACCCGTTTGTAAC------------CCCCCCCCCCC--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TNACC-CGC-CTCCATTTAAACGAATATACGAATATCTATATAGAAT--AAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGAC---GATTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAACGTC-AAAA-TTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAC-GTT-TAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAA-AAAAAAA-AT-TAT--TTATGAAATCGATGTGATCAAAATTGGTCGTATATATTACATTTTATGATAGAGTAGATCTAAG-AGTNTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTCGGTCAAACCTGGTCCTGGTC
gi|1 : CTTGCGAATATAATTATCTTGTTGATCAGCTACATTTGTTAAGCTG-AGTTAGAATTTTGTTGTTGTTT-GCATTGTGAAAATGT-GGATAATT---T-TTTCAT--TTTTCATAATTTTA---TATACTTGTATCCA--ATCATGCACTGT-----TGTCATTTACTTACA-TGTAATAAC-TGAAAGACAA-TTGTC--A-A--ATGC--TTGATTTCTAATCTTTGTTTCATAAACAAAACCCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTATT-CA----TTGGAATTTAGAGGGGAAAAAAA-ATATGA-A-GA---ATGGT-TAATTT---ATT-GTATAGAAAAAGGAAAACT-AT-GGAATATTTCAAGG-GGAAAAATATAAACCAAGAAAAAAAA---AAA--CTGAGTGAAAAATATGACATGACTGTTTCCATCTTATTTCTTTTTTAGCAATCTACAATATATCAT--CAAGTATTCAAAACTTTTTTCACACAGGTAACATGTAAATTAATT-AC-T--GAGCTACTGTTTAC-TTAAAAGAAAAATTATCCAGGTAGGCCAGTTTTAAAATTAAT-ATTAA-AGATTATGAAAACATTTG-TATAATTTTTTCATTGAACACCAGT-TTTAC-C---------TTAATACAGCATTATTTTTTTCTTGTTTTCGTTGGCTTGGGGCTCTACCATGATTGTGTCCATGATCA------TACAAATC-A-GTTGAA-AGATT--ATTTTT-CTAT-CATCCA--AAT-C-ATTC-AGTAT----AGAAAGATT--ACTGCGG-CTAT---------TTTATGGA----CAATGATGAACCAACAA-ATGCGATAAAATAGTAACGCGATTCCATACTTCAGAATCTACATGAG--TCAACATCC-TGCTTTGTTTATTGATT--------------CATATGCCACCCGATAAACTTTTTTTTTAGCGACCGTTAACAAGCATTTCAATCGGTTACATACATCTT-CTAAAAACTTACCTTGTG-ATCAGAAATTCCATG-CTGTAAATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AGACTTCGTAACGGAAA--CGCGGTC-ATGGCTGA--TCGGTAAACTACGGC-ACTCGTAATCAGTCATATCTACCTATGGAATTTC--GTTTATAAATCTAATTTATTTTTAAATTCTTTTTGTTATCCAATATGTGAATTTTCTACAAGATGACATACATATTTTTGCGATATATATCTGTATGTTTCAAAACTATAATTCAATAAACCTAACATTTGATGTATGCAAGTTTTAAAATGCACACCCGTTT-TAAC------------CCCCCCCCCCC--CCC---------CC
gi|1 : C------------CCCCCCCCCCC--CCC---------ACA-------------ACTTTCCTCC-TCATCAACAGAACAGAAAAATCCACCAAGGTTTTAAAATTTACCACACTTTCCATTTAAATGAATATGCGAATATCTATATAGAATAAAAAAATATGCCTCATGCACATT--CATAATTATTTAGGA-TTTACTTTTTTTTGAATGATT----TGGGATTGAC---GA-------------------------GTTTTGACGTAACGTCAAAAA-TTTGTCAACAATGGTCAAAAAATTGCGTACTACAACACCTTAT-GTTATAAGACCTTCATATCAGCAATTGTCCACGACCGAACAGAATAAAAAAA-ATGTAT--TTATGAccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgtatttatgatagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|1 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaaccccccccccccccccccccccccccccTTTATGATAGAGTAGATCTAAGGAGTTTATTTCTAATACAATTTTGTTTGC-TTTGACGTTAGGCCTGAATTTCTGGTCATAA-TTTGGTCAAACCTGGTCCTGGTCtagagtagatctaaggagtttatttctaatacaattttgtttgctttgacgttaggcctgaatttctggtcataatttggtcaaacctggtcctggtcc
gi|10 : cttgcgaatataattatcttgttgatcagctacatttgttaagctgagttagaattttgttgttgtttgcattgtgaaaatgtggataattttttcatttttcataattttatatacttgtatccaatcatgcactgttgtcatttacttacatgtaataactgaaagacaattgtcaaatgcttgatttctaatctttgtttcataaacaaaacccattctgaatattaggcctatgcaatattatcacatttgtattcattggaatttagaggggaaaaaaaatatgaagaatggttaatttattgtatagaaaaaggaaaactatggaatatttcaaggggaaaaatataaaccaagaaaaaaaaaaactgagtgaaaaatatgacatgactgtttccatcttatttcttttttagcaatctacaatatatcatcaagtattcaaaacttttttcacacaggtaacatgtaaattaattactgagctactgtttacttaaaagaaaaattatccaggtaggccagttttaaaattaatattaaagattatgaaaacatttgtataattttttcattgaacaccagttttaccttaatacagcattatttttttcttgttttcgttggcttggggctctaccatgattgtgtccatgatcatacaaatcagttgaaagattatttttctatcatccaaatcattcagtatagaaagattactgcggctattttatggacaatgatgaaccaacaaatgcgataaaatagtaacgcgattccatacttcagaatctacatgagtcaacatcctgctttgtttattgattcatatgccacccgataaactttttttttagcgaccgttaacaagcatttcaatcggttacatacatcttctaaaaacttaccttgtgatcagaaattccatgctgtaaatcatcggcatagatttactctgcaatgttacacgccgctagacttcgtaacggaaacgcggtcatggctgatcggtaaactacggcactcgtaatcagtcatatctacctatggaatttcgtttataaatctaatttatttttaaattctttttgttatccaatatgtgaattttctacaagatgacatacatatttttgcgatatatatctgtatgtttcaaaactataattcaataaacctaacatttgatgtatgcaagttttaaaatgcacacccgttttaacccccccccccccccccccccccccccccccccccccccccccacaactttcctcctcatcaacagaacagaaaaatccaccaaggttttaaaatttaccacactttccatttaaatgaatatgcgaatatctatatagaataaaaaaatatgcctcatgcacattcataattatttaggatttacttttttttgaatgatttgggattgacgagttttgacgtaacgtcaaaaatttgtcaacaatggtcaaaaaattgcgtactacaacaccttatgttataagaccttcatatcagcaattgtccacgaccgaacagaataaaaaaaatgta-TTTTTGCGATATATATCTGTATTGTTCAAA-CTATAGATCAGGAAACCT-ACA--TGATGCATGTAAG-TTTAAAATGCACACCGGTTTGTAAC------------CCCCCTCCCCCTGCCA---------CCA-------------Ac
gi|11 : TATATAGATAGAAT--AAAATTATGCCT-ATGCACC-T--TCTGATT-TTTAGGATTTTAC---CTTTTGAATGA-T----TGGGATTGAC---G
gi|11 : TTGACGTAACGTC-AAAA-TTTGTTAACAATGGtaacgtcaaaatttgttaacaatgg
gi|12 : tatatagatagaataaaattatgcctatgcaccttctgatttttaggattttaccttttgaatgattgggaGTGTACTTCTAAATTCT-ATATAAAA--GGAAACT-ATTGGAATATTTCAAGG-GAAAAAGA--AAGC--------AAAA---CAATCCT-------AAAT-TGAT-TGACTGTTTCCAT
gi|13 : ACATTTTATGATAGAGTAGATCTAAG-AGTGTATT--------------GTTTGCTTTTGACGTTAGGTC--------------TAA-TTCAGTCAAACCTGGTCCT
gi|14 : aTATTTCTAATACAATTTTG-TTG-TTTTGACGTTAGGCC--------------TAATTTCGGTTAAACCTG
gi|15 : atagaagtaactga--ATTGTGTACTTT---ATTCTTATAGAAAA--GAAAACT-AT-GG-ATATTTCAAGG-GAAAAAAAAa
gi|16 : TTCAATTG--TGCATACATCTT-CTAAAAACTGACCTTGTGTATCAGAAAT--CATGAc
gi|2 : CTTG-GAATATAATT--CTTGT-GATCAGCTACATTTGTTAAGCTGTAGGTATA-TTTT-TTGTTGTTTTGCATTGTGAAACTGTTGGATAATTGTCTGTTTTATAATTATTATACTTGTACCATATAATTCTATCCA-GATCATGCACTGT-----T-------ACT-ACAATGTAATAACCTGAAAGACAATTTGTC-AA-A--ATGCA-TTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAGGCCT-------ATGC-AATATTATC-ACATTTGTA-TTCA---TTTGGAATTTAGAAGCG-AAAAAA-ATAT-A-ACGAT--ATGGTGTACTT----ATTCTTATAGAAAA--GAAAACT-AT-GGAATATTTCAAGG-GGAAAAAAATAAAC--------AAAA---AAA--CTGAGTGA-AAATATGATATGACTGTTTCCATCTTATTTC-GTTTTAG--ATCTAC-ATATATCTTTCCAAGTA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--T-GCTACTGTTTAC-TT--AAGAAAAA-TATCCAGGTAGGCCAGTTT--AAATTAATAATT-G-A---TA-GGAAACATTTGTTATCA-TTTTTCATT-GACACCAGT-TTTACAC---------TTAGTACAGCG-TA-TTTTTTCTTGTTTTCGTT-GG-----GCTC-A-CATGATTGTGTCCATGATT-------TACAAATC-AGGTTGAA-TGA-TT-A--TTTTCTATCCAT-CA--ACTAC-ATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT----------------------------GAACCAACAAGATGCG-TAAAAT-GTAACGTGATTCCATACTTCAGAAGTTACATT-GAGTCAACAT-CCTGCTTTG---------T--------------CA--------CCGATAAAC--GTTTTTTAGCGA--GTTAGTAAGCATTTAAATCG--TACATACGTCTT-CTAAAAACTTACCTTGTGTATCAGAAAT--CATGACTGT-AATCATCGGCATAGATTTACTCTGCAATGTTACACG-CCGCT---AAGCTTCGTAACGGAAA--CGCGGTC-ATGGCTGACCTCGGTAAACTACGGCGACTCGTAAT-AGTCAAATTTACCTAT-GAATTTCTGGTTTATAAATCTAATCGA-TTTTATATTC-TTTTGTTAT-CAATAT-GAA--TTTCTACAAGATGACATAC-T-TTTTTGCGATATATATCTGTATTGTTCAAAACTATAAATCAATAAACCT-ACA--TGATGCATGCAAG-TTTAAAATGCACATCCGTTTATA--------------CCCTCTCCCCG--CCA---------CCA-------------ACTTTCCTCCGTCAT-AGCAGAACAGAAAA--TCACCCAAGTTTTAAAA-TGACC-CA--CTCCATTTAAATGAATATACAAATATCTATATAGAAT--GAAAATATGCCT-ATGCACA-T--CATAATT-TTTAGGATTTTAC---TTTTTGAATGA-T----TGGGATTGACTTGAATTTNNNNNNNNNNNNNNNNNNNNNNNNNTTGACGTAACGTC-AAAATTTTGTCAACAATGGTC---AAATTGCGTACTACAGCACCTTAT-GTT-T-AGACCTTCATATCAGCAATTGTCCACACCCGAACAGAA-AAAAAAAGAC-TAA--TTGTGAAATCGATGTGATCAAAATTGGTCGTATATATTATATTTTATGATAGAGTAGATCTAAG-ATTGTATTTCTAATACAATTTTGTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGTC
gi|3 : aTGTC-AATACCACACAGTTG-TTTCTAATCTTTG-TTCATAAACAAAA-CCATTCTGAATATTAAGCCTTAGGCCAATGC-AATA--ATCAACATTTATA-T-CATT-TTTAGAATTT-GAAGAA-AAAAAATATAT-ATC-AATTCATGGTGTAGTTT---ATTCTTATAAAAAA--GAAAACTGAT-GGAATATTTCAAGGAGGGAAAAAATAAAC--------AAAA---AA----T----------TATGACATGACTGTTTCCATC-TATTTC-TATTTAT--ATCTAC-ATATATCTT--TAAGAA-TCAAAA----TTTCAAAAAGGTAACATGTAA---AATTCACTTAAAAGCTACTGTTTACTTT--AAAGAAAA-TATCCAGGTAGGTCAGTT----AACT-----TTGA-A---TATGGAAACATTTG-TACAA-TTTCCC----AACACCAGTATTTACACTTATAATTATTAATAC-GTG-TA-TTTTTTCTTGTTTTCATT-GT-----GC-CTA-CATGATTTTATCCATGATGA------TACAAACCAAGGTTGAAGTGA-T--AT-TTT-CTATCAAT-CA--A-TCC-ATTCAAGTATTATAAAAAAAA-TAAACTGCGACCTATGTAGCACGCTT-----AATTTT----ACGAACCAACAAGATGCG-TAAAAT-GTAACGCGATTCCATAC-TCAG-AGTCA-ATT-G-----ACATGC-TGATTTG---------TTTTGATTCATTGGCCA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCA-TTCAATCG--TACATACATCTTATTAAAAAACTACCTTGTGTATCA-AAAT--CATGACTGT---------------ATCTATTCTGCACTGTTGCACGCCCGCTTAGATGCTTCGTAACGGAAAACCGCGGTCAATGGCTGAC---------CTACGGCGACTCGTAAT-AGTCATATC-----------TTTTTGGTTTATAAATCTATTTGA-ATTTTTATTC-CTTTGTTAT-CAATAT-TGA--TTTCTACAAGATGACATAC---TTTTTGCGATATA-ATCGTTATTGTTCAAATCTATAGATCAATAAACCT-AC---TGATGCATGCAAT-TTAAAAATGCATATCCGTTTGTAACAACAACAACAAACCCCCCCCCCC--CCACAACCCCCCCCACCACCACCACACCACTTT-ATCCGTCAA-AGCAGAACAGAAAA--TCACCAAAGTTTTAAAA-TCACC-CGC-C-CTATTT-AACGAATATACAAATATCTAT-----AT--AAAAATATGCC--ATGCACA-TCACATAATT-TT--AGATTTT-----TTTTTTAATGA-TTGCATGGGATTAAC-----TTT--CAAGAGGCTTTTGACGGCCCGTTTTGACGTAA-GTC-AAAA-TTTGTTAAAAA-GGTC---AAATTGCATACTACAGCACC-TACAGTT-TAA-ACGTTCATAACAACAATTGTCCAC-ATCGAGCAG----CAAAAA-AT-TATCATTATGA
gi|3 : TTATGATAGAGTAGAT-TGAA-AGTTTATTTCTAATACAATTT-GTTTGCTTTTGACGTTAGGCC--------------TAA-TTTGGTCAAACCTGGTCCTGGtagagtagattgaaagtttatttctaatacaatttgtttgcttttgacgttaggcctaatttggtcaaacctggtcctgg
gi|4 : tgtcaataccacacagttgtttctaatctttgttcataaacaaaaccattctgaatattaagccttaggccaatgcaataatcaacatttatatcatttttagaatttgaagaaaaaaaatatatatcaattcatggtgtagtttattcttataaaaaagaaaactgatggaatatttcaaggagggaaaaaataaacaaaaaattatgacatgactgtttccatctatttctatttatatctacatatatctttaagaatcaaaatttcaaaaaggtaacatgtaaaattcacttaaaagctactgtttactttaaagaaaatatccaggtaggtcagttaactttgaatatggaaacatttgtacaatttcccaacaccagtatttacacttataattattaatacgtgtattttttcttgttttcattgtgcctacatgattttatccatgatgatacaaaccaaggttgaagtgatattttctatcaatcaatccattcaagtattataaaaaaaataaactgcgacctatgtagcacgcttaattttacgaaccaacaagatgcgtaaaatgtaacgcgattccatactcagagtcaattgacatgctgatttgttttgattcattggccaccgataaactctttttagcaagttaataagcattcaatcgtacatacatcttattaaaaaactaccttgtgtatcaaaatcatgactgtatctattctgcactgttgcacgcccgcttagatgcttcgtaacggaaaaccgcggtcaatggctgacctacggcgactcgtaatagtcatatctttttggtttataaatctatttgaatttttattcctttgttatcaatattgatttctacaagatgacatactttttgcgatataatcgttattgttcaaatctatagatcaataaacctactgatgcatgcaatttaaaaatgcatatccgtttgtaacaacaacaacaaacccccccccccccacaaccccccccaccaccaccacaccactttatccgtcaaagcagaacagaaaatcaccaaagttttaaaatcacccgccctatttaacgaatatacaaatatctatataaaaatatgccatgcacatcacataattttagattttttttttaatgattgcatgggattaactttcaagaggcttttgacggcccgttttgacgtaagtcaaaatttgttaaaaaggtcaaattgcatactacagcacctacagtttaaacgttcataacaacaattgtccacatcgagcagcaaaaaattatcaC-ATATCATTCTATCAAAGAT-ATGCACTGTGGTTAT-----TTAGT-ACAATGTAATAACCTGAAGGACAATTTGTCGAA-A--ATGCA-TTT-TTTCAACTC----------AAATCAAA-CCATTCTGAATATTAGGCCT-------ATGCCAATAC-AT--GCA-----A-T-CA-CATTTGGAATTTAGAAG---AAACAA-AT-C-A-A-GAT--ATGGTGTATTTT---ATTCTTAGAGAAAA--GAAAACT-AT-GGAATA--------------GAAATAAA---------AAAACCCAAA--CC-------AAAC------TG-TTGTTTCCATCT-ATTTC-TTTTTAG--ATCTAC-AGATATCTT--CAAATA-TCAAAAC-TTTTTCACACAGGTAACATGTAAA-TAATTCACTT--GAGCTACTGTT----------GAAAAA-TATCCAGGTA--------T--A----------TAGAA---TATGGAAACATTTGT
gi|5 : t-GTG-TA-TTTTTTCTTGTTTTCATT-GC-----GCTAAA-CATGATTTTGTCCATGACGA------TACAAAAC-AGGTTGAA-TGA---------T-CTATTC-------ACTATGATTC-AGTAT----AGAAAGA-T--ACTGCGG-CTAT---------TTG----A----C----ACGAACCAACAAGATGCG-TTAAAT-GTAACGTGATTCCATACTTCA-AAGTCAT-TT-GTTTTAA------TTCATTG---------C--------------CA--------CCGATAAAC--TCTTTTTAGCAA--GTTAATAAGCATTTCAATTG------------------------TACCTTGTGTATCAGAAAT--CACGACTGT-AATCATCGGCATAGATGCATTCTGCACTGTTGCACG-CCGCT---ac
gi|7 : atgcaATTAATAAATAG-AA--TATGGAAACATTTGT-ATCA-TTTTTC--C-AACACCAGT-TTTACAC---------TTA---------------TTTCTTGTTTTCAT--GC-----GCTCTA-CAAGATTTTGTCCATGATGATACATGTACAAACC-AGGTTGAA-TGA-TCAA--TTA-TTAT--AT-AAATATTAC-ATtaa
gi|8 : aat-AATCATTGGCATAGATTTACTCTGCAATGTTGCATG-CCTCT---TAGCTTCATAATGGAAA--TGCGGTT-ATGGCTGACCTCAGTAAGCTACGGTGACTCGTAAT-AGTGATATCTACCTAT-GAATT-----------AAT-----------------TCTTTTTGTTAT-CAATAT-
2 sequences could not be aligned to this reference sequence:
Unaligned ( gi|6 ): CAGCCCCCCCCCCCCCCCCCCCACCCCGCCCCCCCCTCCCCCCCCCCAACAAACGAAGTCCCCCTCCACCCCCCACCACCAAAACAACCAATACTGGGGTGAAAATTCCTCCTGTAAACTGCAAAGGATAAGATTATATGGTGCACATTCTTGATCTATATGTAAAAGATGATATTTTTCTTTG
Unaligned ( gi|9 ): TGCGGGTATGTATCTTTTTGTGAAAGTAAGTGATTTCATGAATCGGGCACCTGAAGTGGGAAATCTGACAGTTTCAAATGTCCACTAAATCTTAACACACACTTCCCCCCCCCCCCCCCCCCCCCCGCCC