lowQualScore : 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 111111111111111111111111111111 22222222222222222222222222222222222222222222222222222222222222222222222222222222222 111111111111111111111111111111111111111111111111111111111111111111111111111111111 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111 1111111111111111111111111111111111111111111111111111111111111111111111 1111111 33333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333
lowQualScore : 11 22222 11 66666666666666666666666666 11 111111111111111 11111 333 1111111 222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222 7777777777777 3333 333333 1 111 444444 11 1 555555 111111111111111111111111111111 1 44 22 55555555555555555555555555555555555555555555555555555555555555555555555555555555555 1 555555555555 22222 11 1111 5555555555555 1 999999999999999999999999999999999999999 2 11 4444444444 1 1111 44444 44444 11 11 44444444 000000000000000000000000000000000000000000000000000000000000000000000000000000000 333333 44444 22 1 66666666666666666666666 222 333333333 1 1 1111 22222222222222222222222222222222222222222222222222222222222222222222 11 11 1111111111111111111111111111111111111111111111111111111111111111 2222222222222222222 111 111111 6666666666 111 1 1 333333 1 333333 1 3333333 33 1 2 11 1 1 222 3333333333333333333333333333333333333333333333333333333333333333333333 1 444444444 4 33 2 222 2222 777777777 0000000 555555 55 55 1 888888888 9999999999999 4 44444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 3333333 33333333333333333 333333333333333 11111111 11
lowQualScore : 5 33 5 77777 88 11 5 66 00000000000000000000000000 33 777777777777777 5 22222 888 555 66 8888888 5 5 66 777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777 8 0 3333333333333 3333 222222 2 0 111 222222 88 2 111111 555555555555555555555555555555 6 3 2 5 77 77 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 3 0 111111111111 44444 9 33 2222 6666666666666 3 222222222222222222222222222222222222222 0 88 7 8888888888 3 7777 11111 11111 44 88 55555555 555555555555555555555555555555555555555555555555555555555555555555555555555555555 333333 33333 00 0 88888888888888888888888 9 3 000 777777777 0 0 3 8 7777 66666666666666666666666666666666666666666666666666666666666666666666 22 77 55 0000000000000000000000000000000000000000000000000000000000000000 4 6 6 8888888888888888888 111 999999 3333333333 3 777 0 0 333333 3 777777 3 3333333 11 3 3 2 2 2 2 2 2 77 3 0 0 444 1 8 8 8 8 4444444444444444444444444444444444444444444444444444444444444444444444 5 2 2 444444444 3 0 11 0 666 4444 111111111 5555555 6 888888 55 55 5 000000000 3333333333333 0 6 55555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555 666 2 8 4444444 88888888888888888 1 000000000000000 88888888 5 6 5 33 5
lowQualScore : . .. . ..... .. .. . .. .......................... .. ............... . ..... ... ... .. ....... . . .. ................................................................................................... . . ............. .... ...... . . ... ...... .. . ...... .............................. . . . . .. .. ................................................................................... . . ............ ..... . .. .... ............. . ....................................... . .. . .......... . .... ..... ..... .. .. ........ ................................................................................. ...... ..... .. . ....................... . . ... ......... . . . . .... .................................................................... .. .. .. ................................................................ . . . ................... ... ...... .......... . ... . . ...... . ...... . ....... .. . . . . . . . . .. . . . ... . . . . . ...................................................................... . . . ......... . . .. . ... .... ......... ....... . ...... .. .. . ......... ............. . . .............................................................................................................................................................................................................................................................. ... . . ....... ................. . ............... ........ . . . .. .
lowQualScore : 7 66 0 99999 22 99 0 99 99999999999999999999999999 88 777777777777777 0 55555 888 555 11 0000000 8 0 99 444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444 0 8 8888888888888 2222 222222 5 0 000 777777 33 3 000000 000000000000000000000000000000 0 0 5 0 55 55 66666666666666666666666666666666666666666666666666666666666666666666666666666666666 2 0 222222222222 88888 2 88 0000 8888888888888 3 777777777777777777777777777777777777777 3 33 3 3333333333 3 3333 00000 77777 33 33 55555555 888888888888888888888888888888888888888888888888888888888888888888888888888888888 333333 33333 77 0 88888888888888888888888 8 5 555 555555555 0 0 8 0 0000 66666666666666666666666666666666666666666666666666666666666666666666 33 33 33 4444444444444444444444444444444444444444444444444444444444444444 2 7 7 8888888888888888888 777 000000 5555555555 2 555 0 0 222222 3 777777 3 3333333 77 3 0 5 5 5 5 5 5 55 7 0 0 666 8 0 0 0 0 6666666666666666666666666666666666666666666666666666666666666666666666 0 5 5 555555555 0 0 55 0 555 0000 555555555 0000000 0 000000 00 00 0 000000000 0000000000000 0 0 99999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999 444 7 3 2222222 33333333333333333 4 999999999999999 99999999 0 0 0 66 7
consensus : GTAGT-GTA--TACA-TC-G-CCATT-AT--A-CT--CATT----T---A-T---AA---T---A--CGTCCAAAAA---ATA-AAA--TC-AGTGC-TGCAAATA-----AGAA---T---GTA--AC-AA--A-GCG-AT--TT-TAA-T--CA---TGATAA--GC-TAG-----G--ATC---GAGGC-CTAA-AA--TGGC-GTT--------TGTAC--CTC--TA---N-C-TC--A-AAGTAC-ATGTACACGGTATACA--NT-AGTCAACAC-TTGAG--A-A-TNT-GAAGANCATTATCAC-T---TTTG--AACTTTAAGAGACCNAGGGAGGGCANGGAGGTGGTAGAATGCCNCACTNACCCAGAGNTTTGANTAGAAGGAAGATGGGTTGACAGAGTTATAATCGTGTTACTNTGTATGACAACAAAGAAGAATAAAGTNAATGGA--TT-GAATTNA-------CAT-ACG---A--AATAACGCACATG-TAAGATGTAAA-GGATAACCAATCTTTGAC-CT--CCACCA--TGCTATGCT--A---TTN----TGACAT-TG-T--C-TAA-G-CA-T--AC-TACAAA----AC---GCAGATTACACTTT-CTTT--TCAGCTTC--TTGTC-ATGGCTA-GAAAAAA-G-TCC---A-ATTGT-G---CTTC-ATGCTAC--GAAAAAAGTGGCACAAAACCNANGATTCATTAGGCGTTAGAGCTGTTTCNTTNNAATGGTCGCAGGGGGGNNGGCGGCAAAAAAAAATCAA-C-----TGAATGTGAGGA-GGGGCG-----AACTTT-ATTAAT-AT-GGCA--A-G-CGAAAAT-----AAAATAAAANTAAA-TAAANANGTAA--TAC-ACC-ACTAT-GTG----TG-------------GATGTG-GGG-----G-GGGGG-----GAC------------CTTCT-A--AAA-CTCAACGAATGTTGGGGGGGGGGGNGGT-TAAAC--CT---T-C-----C-C-TAG-------------C------------------C---C--ACCTCG-GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTC-TAGGATTTGTC---GA-AGT-CTAGGCG-AT--GGAGG-GTC--G---AAG-ATTGAT-AT-CTTTTACATC-TTAC-TGCGTGTATNTGNGNGNGNGGGNGGGGGGGGGGTG-TCA-TTCAAG-ATCCA-T-T-ATTT-TATNAGCTTTAACATGTATATAATAAGCTAC-GATATAA-C-TGTCTCCGATCCTTCTAGTGTGTAAT--CNAAACTCCGNTNTTTTGTATATAAATNACATG-TATATNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTGATTCTTCTCACCCCCCCCC-------------TCCCGCCCCTCCCGT--TCAATTC--AA-TGT-AGTAG-TAGTGNNCTTC--AAATTTCTCAAGCGTTG-A-TAC---TGTAT-ACA------TGTA-CTTA-----GGA---GG------GTAC--AAAC-GCCA---TTTAGGCC-TC---GATCCTAGCG--TTACC-------T-------AA--------T------------------GAT---A-AT-----------------TCT-TATTTGCAG-C-----ACTG--AA-TTTTTATT--T-ATTTTTGGACGTATT-TTA--TT-A----AATG--AG-T--ATAA-TGGC-GATGTA--TAC-ACTA
Reference ( gi|2 ) : GTAGT-GTA--TACA-T--G-TCATT-AT--A-CT--CATT----T---A-T---AA---T---A--CGTCCAAAAA---ATA-AAA--TT-AGTGC-TGCAAATA-----AGAA---TA--GTA--AC-AA--A-GTG-AT--TT---A-T--CA---TAATA---GC-TAG-----G--A-----GAGG--CTAA-A---TGG--GTT--------TGTA---TTC--TA---G---TC--A-AAGTAC-ATGTACATGGCATAAA--A--AGTCAA-AT-TTGAG--A-A-TGT-GAAGAACATTATCAA-T---TTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG-GA--GAAT--CTT--TTA--CAAAGTTTTGACTAGACGGAAT-TGGA--GACAGAA-------------ACT---TATG----CAAA-AAGTTTTAAGTAAATGGA--TT-GAATT---------CAT-ATG---A--AATAACGCACATG-TAAGATGT-AA-GGATAAACAATCTTTGAC-CT--CTACTA--TGCTATGCT--A---TT-----TGACAT-TG-T--C-TAA-G-CA-TG-AC-TAGAAA----AT---GC-GATTACACTTTTCTTT--TCAGCTTC--TTGT--ATGGCTA-GAAAAAA-G-CCC---A-ATTGTGGGGGCTTT-ATGCTAC--AAAAT--GTGG-ACAAA--CAA-GA-TCATAAGGCA-TAGAACTGTTTCTCTAAAATGGGGGGGGGGGGGGGGGGGGCAAAAAAAAAT-A--------TGAATGTGAGGATGGGGCAC----AACTTT-ATTAAT-AT-G-CA--A-G-CAACAAT-----AAAATAAAAATAAA-TAAAAAGCTTA--TAC-ACC-ACTAT-GTG----TG-------------GAAG-G-GGG-----G-GGGGG-----AACG-----------CTTCT----AA--CTCAACGAATGTTGGGGGGGGGGGGGGT-TAAAC--CT---T-C-----T---TAG-------------C------------------C---C--AACTCG-GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC--A---AAG-ATTGATAAT-CTATTACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCA-TTCAA--ATTCA-T-T-ATTT-TATTAGCTTTAACATGTATATGATAAGTTAC-GATATAATT-TGTCTCCAATCCTTCTGGTATGGAGTAGCCAAACTCTGGTCTTTTCAACATACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCT--CAATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-GATTC-TCTCACCCCCCCTCTCTCTCTCTCTTTTCTTTCCTCTCTC-T--TCAATTC--AA-TGTTAGTAG-TAGTGTTCTTT--CAATTT-TCAAGTGTTG-A-TAC---TGTAT-ACA-----GTGTA-ATTA-----GGA---GG------GTAC--AAAC-GCCA---TTTAGGCC-TC---AATCCTAG-G--TTACC-------T-------AA--------T------------------GAT---A--------------------TTT-TGTTTGCTG-G-----ACTG--AA-TTTTTATT--TAATTTTTGGACGTATTTTTA--TT-A----AATG--GG-T--ATAA-TGAC-GATGTA--TAC-ACTA
gi|1 : GTAGTTGTAA-TACA-TAAG-CCATT-AT--AACT--CATTAATCT---AAT---AA---TGGTA--CGT--AAATA---A-A-AAA--TTCAGTGC-TGCAAATA-----AGAA---TCCTGTA--ACTAA--A-GTG-AT--TT---A-T--CA---TGATAAC-GC-TAG-----ATTC-----GAGG--CCTA-A---TGGC-GTT--------TGTA---CTCCTTACCTT---CC--A-AAGTA--ATGTACATGCAATACATTT--GTTCAACAT-TTGAG--A-ACTGTCGAAGGACATTATCAACT---TTTG--AA--TTAAG-----CAAGGAGG---GGGAGG-AG--GAATGCCAC--TGAC-CAGAGTTTTGACTAGAAGGAA--TGGA--GACAGAGTT-----------ATTCTGTATA----CAAA-AAGAATAAAGTCAATGGATCTT-GAATTGA-------CATAATGGACA--ATTAACGCACATGTTAAGATGTAAA-GGATAACAAATCTTTGAC-TT--CTCTCA--TGCTATGCT--A---TTTCGTATGACAT-TGCC--C-TAA-GCCA-T--AC-TACAAAAACCAT---GCAGATTACACTTTCTTTC--TC-TCTTC---TGTC-ATGGGTATGAAAAAA-G-TCCCAAA-ATTGTTGGCCTTTC-ATGCTACAAAAAAA--GTGGCACAAA--CCATGATTCAT-AGGCGTTAGAACTGTTT-TTTATAA-----------GGGGCGGCGGCAAAAAAAAAA-AATCATCCTTGAATGTG-GGA-GGAGCAA----AACTTTAATTAATAATGG-CA--AGG-AAAAAATAA---AAAATAAAATTAAA-AAAACAGCTAAACTACAACC-ACTATCGTG----TGTGTGTGTGTGTTTGATGTGTGGA-----G-GGGGG-----GGCGA----------CCTATAAA-AA--CTGAACGAGT-------GGGGGGGGGGT-TAAAA--CT---T-CCAAAAC---TAG-------------CACCCCCTACCCACCACCAC---C--ACCTAT-ACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTC-TAGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTC--ATTGAAGAATTGAT-AT-CT-TTGTAT--TCTC-TACATGT-TGT
gi|1 : tGTAAT-GTA--TACA-TC-G-CCATT-ATTAA-CT--CATT----TAAGA-T---AA---T---AATCGTCC-AAAA---AT---AA--TT-A------ACAGATATTTCCAG-----TG--GCA--GC-AAACA-G-G-ATTATT---A-T--GG---TAA-A---GC-TAGGATCCG--A-----GAGGC-CTAA-AAAGTGGCCGTT--------TGTAC--CTC--CG-----------A-AAGTACAATGTAcatgtgcttctactgtttccgatgtgtgtaattcaaatccattattttgtatatttacatgtatatggataagttaacagattcataactttgtcctccaatctccttctggtcagcttagtcaaaactctggttgtactttcaacatgtaaacatttggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|12 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatgggaggtgtcattgaagaattgatatctttgtattctctacatgttgtcatgtgcttctactgtttccgatgtgtgtaattcaaatccattattttgtatatttacatgtatatggataagttaacagattcataactttgtcctccaatctccttctggtcagcttagtcaaaactctggttgtactttcaacatgtaaacatttggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgatGTAGT-GTA--TACA-TC-G-CCATTTAT--A-CT--CATT----T---A------A---T---A--CGTC--AAAA---TTA-AAA--TTCAGTGC-TGCCAATA-----AGAA---T---GTA--TT-AAC-A-GCG-AT--TT---A-TAACAAGGTAAT----GC-TAG-----G--ATCG--GAGC--CTAA-agt
gi|19 : GTAGT-GTA--TACATT--G-CCAT---T--A-CT--CATT----TA--A-TAGAAA---T---A--CATCT-AAAA---ATA-Ac
gi|8 : GTAGT-GTA--GACA-TC-G-CCAT--ATG-A-TTAGCATT---------------A---T---A--CGTCCAAAAA---TTAGAAA--TC-AGTGC-TGCCGATA-----CGAA---T---GTCTTAC-CG--A-GCGTAT--TTATAA-T--CATG-TAAT----GC-T-G-----G--ATC---GAGGC-CTAA-aat
gi|17 : agtGTAGT-GTACATACA-TC-G-CCATT-AT--A-CT--CAT-----------------------------------AA---AT-------TC-AGTGC-TGCAAATA-----AGAA---T---GTA--gcgt
gi|11 : T-GTA--TACT-C--G-CCATT-AT--A-CT--CATT----T---A-----AA---T---AA-CGTCCAAAAA---TTA-AAAATTC-AGTGCTTGCCAATA-----AGAAATGTA--TTA--CC-----A-GCG-AT--TTATAA-T--CA---TGGTAAATGC-TAG-----G--ATC---GAGGGCCTAA-
gi|6 : gCA-T--GGCCACT-AT--A-CT--CATT----T---AAT---AAAAAT---A--CGTCCAAAAATAAATA-AAT--GC-AGTAC-TGCAAATA-----AGAA---T---GTA--AC-AC--A-GTG-AT--TT---A-T--CA---TGGTAAC-GC-TAG-----G--ATC---GAGAC-CTAA-A---TGGT-GTT--------TGTA---CCT--TA---A---TC--CTAAGTAC-ATGTATACAGT----------AGTCAACAC-TTGAG--AGA-TCT-AAAGACCA
gi|3 : tcaattcaactgtagcagt-TGCAAATA-----AGAA---TTT-GTA--AC-AA--ACGTG-AT--TTTTAA-T--GA---TAACG---GCCTAG-----C--GTCCTCGAGG--CTAATC---TGGC-GTTCTGTACACTGTACCTTCC--TA---TACCTCCTA-AAGTAC-A----CACTGCATTAC--ATTAGTCCA-ACATTGAACCA-T-CGT-GAA-AGCATTATCAC-G---TTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT--CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGATGGGTTGACAGAGTTATAATCGTGTTACTA--TATGACAACAAAGAAA----AAGTAA-TGGA--TTTGAATCTAA------CAT-AT----ATTAATAACGCACAGG-TAACATCT----------------TTTGAC-CTGCCCATTAATTGCTA--CTTGA---CTGA---TGACATCTG-TACC-TAACG-CAATATACATACAAA----ACATAGCAGATTACACTTTGCTTTATTCAGCTTCCGTTCC--ATGGCTA-GAAAAAACGTCCC---ACACTGTGG---CTCTCATCCTAC--AAAAAAAGTGGCACAAAACCAAAGA-T-ATT-GGCG-TAGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG---CAAAAAAAAATCAAGC-----TGAATGT-AGGA-GGGGCGCAAAGAACTAT--TTAAT-CT-C-CATTA-GTTGGCAATTCCGAAAAATTAATCTAAC-CAACGACGTAA--TAC-ACC-ACT-T-GTGCTGCTG-------------GTTGTG-GGG-----A-GGGGG-----AAAGGGTGGCACAACCTTCTAAACAA--CTCAACGACTG-TAGTGGTTGTGACGGT-AAAGC--TC---T-C-----TACCTAGC------------C------------------C---C--CAC-CGCGCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGAA-T-----------GATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCAG---AAG-ATTGATATTCCTTTTACATCATTAC-AGTG
gi|10 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagaca--AC-AA------G-AT--TT---AAT--CA---TGGTA---TG-TAG-----G--A-----C-GG--CTAA-AA--TGC--GTT--------T------TTG--TA---ACC-TC--T-AAGTAC-ATGTACAT-GTATACA--GT-AGGCAACAC-TTTAGA-A-A-TTT-GAAGTTCACTACTAC-TACATTTG--AATTgtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : cAATGGAG-TT-GAATTACTCACCCGCAC-ACAC--A--GATA-TACACATG-TAAGATGTAAA-AGAT-ATCAATCGTTGAC-C---CT-CCA--TGC----CT--AGACTT-----CGACA
gi|7 : ttaatatggcaagcaaaaaaaaaaaaaataataaatatacaccactatatgtgtgtgtgtagggaccttctaaactcaacgaaggttgggggggggggcaataaacttatacctagcccccaccccggcttctacgcccatgaagatgtaagcttttcctctaggatt--AATAACGCACATG-TAAGAAGT-AAAGGATAA-CAATCTTGAACTCC--CCACTA--TGCTATGCT--A---TTA----TGACAT-TG-T--CCTAA-G-AA-T--AC-TACAAAC---AT---GCAGATTACACTTT-CTTT--TCAGCT----TTGTTCATGACTA-GAAAAAA-G-TCCA--A-ATTGT---GGCTTC-ATGCTAC--GAAAattttatgca
gi|5 : AAAAGAAATCAC-------TGAATGTGAG-AGGGGGCA-----AACTTA-ATTAAT-AT-GGCA--A-G-CAA---------GAAAAAAAAATAAAATAAAAAAGTAA--TAC-ACCCACTAT-GTG----TG-------------TGTG-T-GTGTGTGTGTGGAGG-----GAC------------CTTCT----AAAACTCAACGAAGGTGGGGGGGGGGGGTGGCGTAAACTTCT---C-C-----C---TAGC------------C------------------C---C--ACCCCG-GCTTC-TACGC------CC--------A--TG---AAaaaggccataaaagca
gi|4 : gtTTAAT-AT-GGCA--A-G-CAAAAA------AAAA-AAAAATAA--TAAA-----TA--TAC-ACC-ACTAT-ATG----TG-------------T------GTG-----T-GTAGG-----GAC------------CTTCT----AAA-CTCAACGAAGGTTGGGGGGGGGGGCAAT--AAAC--TTA--TAC-----C---TAG-------------C------------------C---CCCACCCCG-GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTC-TAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC--A---ACG-ATTGAT-AT-CTTTTACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAA-TTCAA--CTCCA-T-T-ATTT-TAT
gi|13 : TGT-GTG----TG-------------GAGG-G-GGA-----G-GGGGGTGGGCAAC------------CTTCTTA--AA--CTCAACAAATG-TGGGGGTGGGATGGATGTAAA---CT---T-C-----TACCTAG-------------C------------------C---C--gca
gi|9 : gtgtgtgtgtg-----AAC------------CTTCT----AAAACTCAACGAATATTGGGGGGGGGG----T-TAAAC---T---T-C-----TGCATAG-------------C------------------CTCCC--ACCTCA-GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTC-TAGGATTTGTC---GA-AGC-CTAGGC--AT--GGAcccaccacgg
gi|15 : GGGGGGGGGG-CAAAT--ATAGCT-C-----T---TAGAGCTTTTGCCCCCC------------------C---C--CCTTCG-GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTA
gi|14 : GGGGGGGGGGGGGGGGGGGGGGTGATCG-TTCCA-----CATT-T-GTTT-TA-AAGATTGAAGATATAAATAATAA--TAC-CATATGA
gi|1 : GGGAGGTG-TCA-TTGAAGAATTGA-TAT-CTTTGTATT--CTCTA-CATGT-TGTCATGTGCT-----TCTA--C-TGTTTCCGAT-------GTGTGTAAT--TCAAA-TCCATTATTTTGTATAT---TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTGATTCTTCTCACCCCCCCCC--------------CCCGCCTTTCTCGT--TCAATTCAAAA-TG-TAGTAG-TAGTG----------ATT------ACATTG---TAC---T--------------------TTC-----GGA----G------GTAC--AAACGGCCACTTTTTAGGCC-TCTCGGATCCTAGCT--TTACCA------T-------AA--------T------------------A-----A--------------------TCC-TGTTTGCTGCC-----ACTGGAAA-TATCTGTTAATTATTTTTGGACG-ATTATTATCTT-A----AATG--AG-TTAATAA-TGGC-GATGTA--TAC-ATTA
gi|1 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatTG-TCAATTCAAG-ATCCA-T-TGACTT-TATT--CTTTT---TGTATACA----------GA-ATAACTCTGTCTCCATTCCTTCTAGT---------CAAAACTCTGGTCcagt
gi|18 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccact--ATTCA-T-T-ATTT-TATAAA---TGACATGTATATGATAAGTTACAGATATA----TGTCTCCAATtaatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatgggaggtgtcattgaagaattgatatctttgtattctctacatgttgtcatgtgcttctactgtttccgatgtgtgtaattcaaatccattattttgtatatttacatgtatatggataagttaacagattcataactttgtcctccaatctccttctggtcagcttagtcaaaactctggttgtactttcaacatgtaaacatttggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|18 : ATAAATGACATG-TATA-TGATAAGTTA-CAGA-T-ATA----TGTCTC-CAAT
gi|1 : attcattattttTCCTCCCCCTCCT-TGCTTAATTC--AA-A---AGTTGATAATGTCCTTCGACAGTTC-TCAAATGTTG-A--ACAAATGTATTGCA------TGTACATTACTTTGGAA---GGTAAGGAGTAC--AAAC-GCCA----TTAGGCC-TC---GAATCTAGCG--TTATC----------------A--------T------------------GAT---AAATCACTTTAGTTACAGGATTCT-TATTTGCAG-C-----ACTG--AATTTTTTATT--T---------ACGTACCATTA--TT-AGATTAATG--AGTT--ATAA-TGGCTTATGTAT-TACAACTA
gi|6 : tg--TCAATTC--AACTGT-AGCAG-T--TGGTCTTT--AGATCTCTCAAGTGTTG-ACTAC---TGTAT-ACA------TGTA-CTTA-----GGATTAAG------GTAC--AAAC-ACCA---TTTAGGTC-TC---GATCCTAGCG--TTACC----------------A--------T------------------GAT---AAATCACTGTGTTACAT----TCT-TATTTGCAG-T-----ACTG--CA---TTTATT--T-ATTTTTGGACGTATTTTTA--TT-A----AATG--AG-T--ATAG-TGGC-CATGggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatgggaggtgtcattgaagaattgatatctttgtattctctacatgttgtcatgtgcttctactgtttccgatgtgtgtaattcaaatccattattttgtatatttacatgtatatggataagttaacagattcataactttgtcctccaatctccttctggtcagcttagtcaaaactctggttgtactttcaacatgtaaacatttggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : CAATTC--AAATGT-AGTAG-TAGTGAACTTC--AAATTTCTAAAGTGTTGCC-TAC---TGTAT-ACATGTACATGTA-CTTA------GA---GG------TTACAAAAAC-G-CA---TTTTAGCC-------GTCCTAC-A---TACC----------------A--------T------------------GATTAAA--------------------TCT-TGT
gi|8 : AC-GC------TTAGGCC-TC---GATCC-AGCA--TTACA-------T-------GA--------TTATAAATACGCTCGGTAAGAC---A--------------------TTCGTATCGGCAG-C-----ACTG--A-----TT-TC--TAATTTTTGGACGTAT---------------AATGCTAA-TC-AT-A-TGGC-GATGTC--TAC-ACTA
gi|12 : agtgTTAGGCT-CC---GATCCTAGCA--TTACC-------TTGTTATAAA--------TCGCTGTT-----------AAT---ACAT-----------------TCT-TATTGGCAG-C-----ACTG--AA-TTTT-------AATTTT--GACGTATT---------A----AATG--AG-T--ATAAATGGC-GATGTA--TAC-ACTA
gi|11 : gTTAGGCCCTC---GATCCTAG-CATTTACCATGATTAT-------AAATCGCTGGT------------------AAT---A--------------------CAT-TTCTTATTG-GCAAGCACTG--AA-TTTTTA------ATTTTTGGACGT-----TA--TTTA----AATG--AG-T--ATAA-TGGC-GA-GTA--TAC-c
gi|19 : gATTTTTAGATGTATTTCTA--TT-A----AATG--AG-----TAA-TGGC-AATGTA--TAC-ACTA
gi|17 : ttATG--AG-T--ATAA-TGGC-GATGTATGTAC-ACTAcaat
1 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 11111111111111111111111111 1111111111111111111111111111111111111111
lowQualScore : 11 44444444444444 111 222 222 11111111 333 33 111 22 5555555555555555555555555555555 1 111 1 222222222 1 11 1 222222 3333 5555555555555 22 33333333 00000000000000000000000000 222222 1 2222 111 555555555 1 11 1 11 6666666 1 22 1 1 1111111 1 4444444444 2 11 2222222 1 1 33333 444444444444 1 22 222222 2 22222222 44444444444 1 33333333333333333333333 22222 222 111 1 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 6666666666666666666666666666666666666666666666666666666666 2222222222222222 111 111111 1 111 333333 1 333 1 1 11 33333333 11 11 11111 222 1111111 11 1111 11 33333 1 1111111111 11 11 333 2 1 1 11 11 3333333 1 11 11 1 1 1 2222 11 11 11 11 88888888888888 11 2 11111 1111 222222222 11 3333 3333333333333 3333333333 2222 33333333333 11111 222 11 0000000000000000000000000000000000000000 333333 4444444444 111 22222 222222222222222 3333333333333 1
lowQualScore : 6 55 99 6 6 6 99 99999999999999 222 4 6 000 6 5 1 5 333 77777777 6 6 444 4 88 6 111 6 1 33 6 9999999999999999999999999999999 6 7 0 9 3 88 666 6 7 333333333 6 1 3 88 2 777777 4444 6666666666666 1 11 1 1 22222222 77777777777777777777777777 777777 4 2222 888 444444444 0 999 77 0 9 2 33 0000000 0 33 0 0 9999999 0 1111111111 3 0 33 3 2222222 0 0 88888 999999999999 0 3 2 22 1 1 777777 3 0 6 77 22 66666666 22 6 44444444444 55 0 77777777777777777777777 88 22222 666 111 8 0 1 7777777 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 2 2222222222222222222222222222222222222222222222222222222222 66 5 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 555555 0 111 0 0 33 66666666 88 11 6 3 1 1 1 1 1 1 55555 8 666 6 6 6 6666666 0 0 22 4 9999 11 22222 0 2 4444444444 88 1 88 1 6 0 1 1 66 333 1 0 55 5 5 77 88 8888888 3 2 5 88 88 2 5 5 5 8888 55 7 88 44 88 7 88888888888888 22 6 3 8 22222 9999 8 0 111111111 33 66 5555 8888888888888 5555555555 0000 11111111111 8 77777 3 0 888 11 0 4444444444444444444444444444444444444444 222222 3333333333 777 66 8 8 00000 8 888888888888888 7777777777777 0 3 0
lowQualScore : . .. .. . . . .. .............. ... . . ... . . . . ... ........ . . ... . .. . ... . . .. . ............................... . . . . . .. ... . . ......... . . . .. . ...... .... ............. . .. . . ........ .......................... ...... . .... ... ......... . ... .. . . . .. ....... . .. . . ....... . .......... . . .. . ....... . . ..... ............ . . . .. . . ...... . . . .. .. ........ .. . ........... .. . ....................... .. ..... ... ... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . . .......................................................... .. . . ................ .. ... ...... . . . . ... . . ...... . ... . . .. ........ .. .. . . . . . . . . ..... . ... . . . ....... . . .. . .... .. ..... . . .......... .. . .. . . . . . .. ... . . .. . . .. .. ....... . . . .. .. . . . . .... .. . .. .. .. . .............. .. . . . ..... .... . . ......... .. .. .... ............. .......... .... ........... . ..... . . ... .. . ........................................ ...... .......... ... .. . . ..... . ............... ............. . . .
lowQualScore : 7 88 22 7 7 7 22 77777777777777 222 0 7 888 7 7 3 7 666 77777777 7 7 555 2 33 7 777 7 0 00 7 0000000000000000000000000000000 7 3 7 7 3 33 777 7 3 777777777 7 0 3 33 0 333333 3333 0000000000000 0 77 0 0 77777777 77777777777777777777777777 333333 0 7777 333 111111111 0 555 55 0 2 5 88 8888888 0 88 0 0 5555555 0 8888888888 2 0 88 2 8888888 0 0 55555 888888888888 5 2 5 22 0 0 333333 7 7 7 77 00 77777777 00 7 00000000000 88 0 22222222222222222222222 88 00000 888 888 8 4 0 4444444 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 8 5555555555555555555555555555555555555555555555555555555555 99 0 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 222222 0 222 0 0 88 22222222 88 22 0 2 2 0 0 0 0 0 00000 0 777 3 7 7 8888888 8 8 88 6 8888 00 66666 0 0 1111111111 33 0 33 0 7 7 0 0 55 555 0 0 00 5 0 55 00 0000000 0 5 5 00 00 5 5 5 5 3333 77 3 33 00 33 3 33333333333333 77 0 3 0 00000 8888 0 8 000000000 88 00 6666 4444444444444 0000000000 4444 00000000000 0 88888 2 8 000 00 8 0000000000000000000000000000000000000000 000000 2222222222 555 22 0 0 00000 0 444444444444444 0000000000000 8 8 0
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT----TA--AAT---ACGTCCAAAAANTA-AAA---T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGATAAC-GC-TAGGATC---GA-GGCCTAA--TGGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAG--AA-CGT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GG-AGAAT--C-CACTTACC-AGAGTTTTGACTAGAAGGAA--TGGA--GACAGAGTTAT---------ACT-T-TATG---ACAAA-AAG--TAAAGT-AATGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAATCTTTGAC-CTCCACCATGCTA--TGCTATTT-GC---TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCC--A-ATTGT--GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAA-CCAAGAT-CAT-AGGCGT-AGAACTGTTTCTTTAAAATGG--G-GGGGGGGGGGGCGGCAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCAC----AA-CT--TTAA------TTAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG---------T-TAAACCT-T----CT-C----CTAGC--C------------------CC--ACCCCG-GCTT-CTACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTC-TAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGAT-AT--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA-A-TTCAT-TATTT-TATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAA-C--TGT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCGGTNTTTTNNACATACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGTA------TACAG--TGTACTT----------AGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGCCTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGCN-GC-TACTG--A-------AT---TTTTATTT-ATT-TTT-----GGAC-G--T---ATT---TT-TATTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT----TA-TAAT---ACGTCCAAAAAATA-AAA---T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTT-TAATCATGATAA--GC-TAGGATC---GA-GGCCTAAAATGGCGTT--------TGTACCTC----T-ANCT--C--AAAGTACATGTACACGGTAT-ACANTAGT-C-AACACTTGAG--AA-TNT-GAAGANCATTATCA-CTTTTG--AACTTTAAGAGACCNAGGGAGGGCANGGAGGTGGTAGAATGCCNCACTNACCCAGAGNTTTGANTAGAAGGAAGATGGGTTGACAGAGTTATAATCGTGTTACTNTGTATGACAACAAAGAAGAATAAAGTNAATGGAT--T-GAAT-TNACATA-CG---A--AATAACGCACATGT-AAGATGTAAAGGATAACCAATCTTTGAC-CTCCACCATGCTA--TGCTATTN------TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----C---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCC---A-ATTGT--G----C--T-TCATGCTACGAAAAAAGTGGCACAAAACCNANGATTCATTAGGCGTTAGAGCTGTTTCNTTNNAATGGTCGCAGGGGGGNNGGCGGCAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCG-----AA-CT--TTA-------TTAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANANGTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGNGG---------T-TAAACCT-T----C--C----CTAG---C------------------CC--ACCTCG-GCTT-CTACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTC-TAGGATTTGTC---GA-AGT-CTAGGC-GAT--GGAGG-GTC---GAAG-ATTGAT-AT--CTTT--------TACATC-TTAC-TGCGTGTATNTGNGNGNGNGGGNGGGGGGGGGGTG-TCATTCAAGA-TCCAT-TATTT-TATNAGCTTTAACATGTATAT-AATAAGCT-AC-GAT--ATAA-C--TGT-CTCCGA--TCCTTCTAGT--GTGTAAT--CNAAACTCCGNTNTTTTGTATATAAATNACAT-GTATATNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCCTCCC-------------GCCCCTCCCGTTCAA-TT--C--AA-TG-TA-GTAGTAGTGNNCTTCA-AATTTCTCAAGCGTTG-A--TACTGTA------TACA---TGTACTT----------AGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGCCTC---GATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTATTTGCA-G--CACTG--A-------AT---TTTTATTT-ATT-TTT-----GGAC-G--T---A-T---TT-TATTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATAATGGTACGT-----AAATA-AAAAATT-CAGTGC-TGCAAATAAG-AATCCTGTA--ACTAA-A-GTG-ATTT---ATCATGATAAC-GC-TAGATTC---GA-GGCCTAA--TGGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAG--AACTGTCGAAGGACATTATCAACTTTTG--AA--TTAAG-----CAAGGAGGG---GGAGGAGG---AATGCC--ACTGACC-AGAGTTTTGACTAGAAGGAA--TGGA--GACAGAGTTAT-----------TCTGTAT----ACAAA-AAGAATAAAGTCAATGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAACAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCGTA--TGACAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCAAA-ATTGTTGG----CCTT-TCATGCTACAAAAAAAGTGGCACAAA--CCATGATTCAT-AGGCGTTAGAACTGTTT-TTTATAA-----------GGGGCGGCGGCAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCA-----AAACT--TTAA------TTAATAATGGCAAG-----GAAAAAATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGT-------GGGGGGGGGG---------T-TAAAACT-T----C--CAAAACTAG---CACCCCCTACCCACCACCACC--ACCTAT-ACTT-CTACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTC-TAGGA-TTGTC---GACAGT-CTATGC-AATG-GGAGGTGTCATTGAAGAATTGAT-AT--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA-A-TCCAT-TATTT-TGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAA-CTTTGTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGATATCTTTGTATT--CTCTA-CATGT-TGT-CATGTGCT------T--CTA--C--TGT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCATTATTTTGTATAT---TTACAT-GTATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCC-CCC-------------GCCTTTCTCGTTCAA-TT--CAAAA-TG-TA-GTAGTAGTG---------ATT------ACATTG----TACT---------------------TT----------CGGA----GGTAC--A--------AACGGCCACTTT-TTAGGCCTCTCGGATCCTAG--CTTTACC----ATAA-T-------------AA---------------TCCTGTTTGCT-GC-CACTGGAA-------ATATCTGTTAATT-ATT-TTT-----GGAC-GATT---A-T---TA-TCTTAAATGAG----------TTAATAATGGCGATGT-ATACATTAtgtactttcaacatgtaaacatttggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAA-TT--C--AAATG-TA-GTAGTAGTGAACTTCA-AATTTCTAAAGTGTTGCC--TACTGTATACATGTACA---TGTACTT----------A-GA---GGTTACAAA--------AAC-G-CA---T-TTTAGCC------GTCCTA---CA-TACC----ATGATT-------------AA--------------ATCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT----TA--AATA--ACGTCCAAAAATTA-AAAAT-T-CAGTGCTTGCCAATAAGAAAT---GTATTAC--C-A-GCG-ATTTATAATCATGGTAAATGC-TAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT----TA---AT---ACGTC--AAAATTA-AAA---TTCAGTGC-TGCCAATAAG-AAT---GTA--TT-AACA-GCG-ATTTATAA-CAAGGTAAT-GC-TAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGA--------TGTAAA-CT-T----CTAC----CTAGCCCC------------------CC--ACCACG-Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCACA-T---T-TGTTT-TA-AAGATTGAAGATATAAAT-AATAA--T-AC-CAT--ATGA-
gi|15 : GGGGGGGGGGCAAATATAGCTCT-TAGAGCT-TTTGCC--C----CC-----C------------------CC--CCTTCG-GCTT-CTACGC------TC--------ATGTG---AAGAATT---GTA
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CAT------------------------AAAT--------T-CAGTGC-TGCAAATAAG-AAT---GTA--
gi|18 : A-TTCAT-TATTT-TATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA-----TGT-CTCCAA--T
gi|19 : TT-ATT-TTT-----AGAT-G--T---A-T---TTCTATTAAATGAG----------T--A--ATGGCAATGT-ATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT----TA-TAAT---ACGTCCAAAAAATA-AAA---T-TAGTGC-TGCAAATAAG-AATA--GTA--AC-AA-A-GTG-ATTT---ATCATAATA---GC-TAGGA-----GA-GGCT--AAATGG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAG--AA-TGT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG--G-AGAAT----CTTTTAC--AAAGTTTTGACTAGACGGAAT-TGGA--GACAGAA-------------ACT---TATG----CAAA-AAGTTTTAAGTAAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAATCTTTGAC-CTCTACTATGCTA--TGCTATT-------TGACAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-GCCC---A-ATTGT--GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA---CAAGAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGGGGGGGGGGGGGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCAC----AA-CT--TTA-------TTAATA-TG-CAAG--C--AACAA--TAAAA--TAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG---------T-TAAACCT-T----C--T-----TAG---C------------------CC--AACTCG-GCTT-CTACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA-A-TTCAT-TATTT-TATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAATT--TGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTGGTCTTTTCAACATACATTACATGGTATAATGATAAGTT-ACAGATT-ATAACTTTGT--CTCAA--TTCTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCA--ATGTAA--ATTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-G--ATTC-TCTCACCCCCC--CTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAA-TT--C--AA-TGTTA-GTAGTAGTGTTCTTTC-AATTT-TCAAGTGTTG-A--TACTGTA------TACAG--TGTAATT----------AGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGCCTC---AATCCTAG---GTTACC--TAATGA-T-------------A----------------TTTTGTTTGCT-G--GACTG--A-------AT---TTTTATTTAATT-TTT-----GGAC-G--T---ATT---TT-TATTAAATGGG----------T--ATAATGACGATGT-ATACACTAcaat
gi|3 : CTTCTG----GATA--AGTGGGATT-TTATCACCTCCATGCCCTCCC--------------TCGGTCTC-TTAAAGTTACC--AA-----ACGTGATAATGCT-TTCACGATGGTTCAA-TGTTG-GACTAATGTAA-----TGCAGTGTGTACTTTAGGAGGTATAGGA---AGGTAC--AGTGTACAGAAC-GCCA---GATTA-GCCTCGAGGACGCTAGGCCGTTATCATTAAAAA-TCACGTTTGTTACAAA--------------TTCTTATTTGCATGTCTACGG--AGAGAAAGAT---TTTGTTTT-ATTATTTAGAGAGAACGG--TGGAA-TAGAAT-TATTAAATAAGGGAGGGTATTT--ATA--GGCGATGTAATACAC
gi|3 : actgtag-TGCAAATAAG-AATTT-GTA--AC-AA-ACGTG-ATTT-T--TAATGATAACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACA-TTGAACCAT-CGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT--CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGATGGGTTGACAGAGTTATAATCGTGTTACTAT--ATGACAACAAAGAA----AAAGT-AATGGAT--TTGAATCTAACATA-T----ATTAATAACGCACAGGT-AACATCT---------------TTTGAC-CTGC-CCAT--TAATTGCTACTTGACTGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCC--ACACTGT--GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGGC---AAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAA-CTATTTAATCTCCATTAGT--TGGCAATTCC--GAAAA------A--TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG---------T-AAAGCTC-T----CTAC----CTAG---C------------------CC--CCACCGCGCTT-CTACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGAT-ATTCCTTT--------TACATCATTAC-AGTG-GTATtttgagtagaaggaagatgggttgacagagttataatcgtgttactatatgacaacaaagaaaaagtaatggatttgaatctaacatatattaataacgcacaggtaacatcttttgacctgcccattaattgctacttgactgatgacatctgtacctaacgcaatatacatacaaaacatagcagattacactttgctttattcagcttccgttccatggctagaaaaaacgtcccacactgtggctctcatcctacaaaaaaagtggcacaaaaccaaagatattggcgtagagcttttcgtttaaatggtcgcaggggggcgggcaaaaaaaaatcaagctgaatgtaggaggggcgcaaagaactatttaatctccattagttggcaattccgaaaaattaatctaaccaacgacgtaatacaccacttgtgctgctggttgtggggagggggaaagggtggcacaaccttctaaacaactcaacgactgtagtggttgtgacggtaaagctctctacctagcccccaccgcgcttctacgcccctgttcatatgacaaagactgggtgaatgatttgttcaagaagtagtaggcggactgggagggtccagaagattgatattccttttacatcattacagtggtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagaca-------TTAATA-TGGCAAG--C--AAAAA---AAAA---AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---------T--AAACTTAT----A--C----CTAG---C------------------CCCCACCCCG-GCTT-CTACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTC-TAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGAT-AT--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA-C-TCCAT-TATTT-TATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-----AA-CT--TAA-------TTAATA-TGGCAAG--CAAGAAAA--AAAAA--TAAAA-----TAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG---------CGTAAACTTCT----C--C----CTAGC--C------------------CC--ACCCCG-GCTT-CTACGC------CC--------A--TG---AAgca
gi|6 : gtTCAA-TT--C--AACTG-TA-GCAGT--TGGTCTTTA-GATCTCTCAAGTGTTG-AC-TACTGTA------TACA---TGTACTT----------AGGATTAAGGTAC--A--------AAC-ACCA---T-TTAGGTCTC---GATCCTAG--CGTTACC----ATGA-T-------------AAATCACTGTGTTACATTCTTATTTGCA-G--TACTG--C-------AT---TT--ATTT-ATT-TTT-----GGAC-G--T---ATT---TT-TATTAAATGAG----------T--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAATCTTGAACTCCCCACTATGCTA--TGCTATTA------TGACAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCA--A-ATTGTG-G----C--T-TCATGCTACGAAAAAAG-GCCATAAAA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT---------AT---ACGTCCAAAAATTAGAAA---T-CAGTGC-TGCCGATACG-AAT---GTCTTAC-CG-A-GCGTATTTATAATCATG-TAAT-GC-T-GGATC---GA-GGCCTAAgca
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGG----GG---------T-TAAA-CT-T----CTGC----ATAGCCTC------------------CC--ACCTCA-GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTC-TAGGATTTGTC---GA-AGC-CTAGGC--AT--GGAgcgt
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 22222222222222 111 222 222 11111111 111 111 111 5555555555555555555555555555555 1 111 4444 1 1 11 1 11 3333 33333 1 22 1 2222 11 55555555555555 11 11 1 333333 1 1 1 2222 111 333333333 1 1 1 1 11 444444444444 1 22 1 1 1111111 1 3333333333 2 11 2222222 1 1 1111 1 22222222 1 11 1 22 1 1 22222222 222 44444444444 1 2222 11 222222 22222 222 111 1 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 1111111 11 33333333333333 22222222222 2222222222222 2222222222222222 111 111111 1 111 222222 1 333 1 1111 33333333 11 11 11111 111 111111 1111 11 333333 1 11 11 11 222 33333 1 1 1 11 11 222 11 1 11 11 1 1 1 2222 11 11 77777777777777 1 11111 1111 1 1111111 3333 4444444444444444444444 2222 33333333333 11111 11 2222 11 0000000000000000000000000000000000000000 222222 4444444444 111 22222 2222222 11 4444444444444 1
lowQualScore : 6 55 99 6 6 6 99 88888888888888 6 222 3 6 000 6 5 1 5 333 77777777 6 6 333 4 6 2 99 111 6 1 777 2 6666666666666666666666666666666 6 7 0 3 7 666 6 7 1111 3 6 3 88 2 88 7 2222 66666 3 00 3 6 2222 88 77777777777777 55 44 3 666666 3 3 3 2222 666 999999999 3 0 3 9 0 0 0 9 2 33 444444444444 0 33 0 0 9999999 0 4444444444 3 0 33 3 2222222 0 0 3 4444 0 22222222 0 3 2 88 3 00 3 3 6 6 66666666 6 333 44444444444 55 0 8 1111 33 3 3 333333 88 22222 666 111 8 0 1 5555555 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 8888888 5 11 00000000000000 00000000000 66 0 5 7777777777777 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 333333 0 111 0 4444 66666666 88 44 3 1 1 1 1 55555 8 222 6 6 111111 0 0 8 8888 33 000000 0 33 6 88 0 88 6 0 333 1 22 55555 5 22 5 5 77 88 000 66 1 1 5 88 88 1 5 5 5 8888 7 7 88 6 7 88 88888888888888 1 3 8 22222 9999 8 0 1 0 8888888 5 5555 8 7777777777777777777777 0000 11111111111 8 77777 3 11 0 4444 11 0 4444444444444444444444444444444444444444 666666 3333333333 777 66 8 8 00000 3333333 1 11 6666666666666 3 0
lowQualScore : . .. .. . . . .. .............. . ... . . ... . . . . ... ........ . . ... . . . .. ... . . ... . ............................... . . . . . ... . . .... . . . .. . .. . .... ..... . .. . . .... .. .............. .. .. . ...... . . . .... ... ......... . . . . . . . . . .. ............ . .. . . ....... . .......... . . .. . ....... . . . .... . ........ . . . .. . .. . . . . ........ . ... ........... .. . . .... .. . . ...... .. ..... ... ... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . ....... . .. .............. ........... .. . . ............. . ................ .. ... ...... . . . . ... . . ...... . ... . .... ........ .. .. . . . . . ..... . ... . . ...... . . . .... .. ...... . .. . .. . .. . . ... . .. ..... . .. . . .. .. ... .. . . . .. .. . . . . .... . . .. . . .. .............. . . . ..... .... . . . . ....... . .... . ...................... .... ........... . ..... . .. . .... .. . ........................................ ...... .......... ... .. . . ..... ....... . .. ............. . .
lowQualScore : 7 88 22 7 7 7 22 33333333333333 7 222 3 7 888 7 7 3 7 666 77777777 7 7 555 2 7 2 22 777 7 0 000 5 3333333333333333333333333333333 7 3 7 3 3 777 7 3 7777 3 7 3 33 0 33 3 3333 00000 3 77 3 7 7777 33 33333333333333 00 00 3 000000 3 3 3 7777 333 111111111 2 0 5 2 0 0 0 2 5 88 000000000000 0 88 0 0 5555555 0 5555555555 2 0 88 2 8888888 0 0 2 8888 0 22222222 5 2 5 00 3 00 3 3 7 7 00000000 7 333 00000000000 88 0 8 2222 88 2 2 000000 88 00000 888 888 8 4 0 6666666 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 2222222 0 55 11111111111111 00000000000 99 1 0 8888888888888 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 000000 0 222 0 8888 22222222 88 22 2 2 0 0 0 00000 0 333 7 7 222222 8 8 0 8888 88 555555 0 88 7 33 7 33 7 7 333 0 00 77777 0 00 5 0 55 00 555 55 0 0 5 00 00 0 5 5 5 3333 3 3 33 7 3 33 33333333333333 0 3 0 00000 8888 0 8 0 0 4444444 0 6666 0 6666666666666666666666 4444 00000000000 0 88888 2 00 8 2222 00 8 0000000000000000000000000000000000000000 888888 2222222222 555 22 0 0 00000 8888888 4 00 8888888888888 8 0
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA---T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGGNGA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTNTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-N-TGA---CAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG--G-GGGGGGGGGGG---CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAANTA-AAA---T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAAC----GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGGGGA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTTTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-C-TGA---CAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGGGGGGGGGGGGGGCGG---CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTNTTTTNNACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-NG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATA-ATGGT-ACGT-----AAATA-AAAAATT-CAGTGC-TGCAAATAAG-AATCCTGTA--ACTAA-A-GTG-ATTTAT---CATGAT-AACG--CTAGATTC---GA-GGCCTAAT--GGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAGAACT---GTCGAAGGACATTATCAACTTTTG--AA--TTAAGCAA--G---GAGGG---GGAGGAG---GAATGCC-ACTGA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATT---------CTGTAT-ACAA-AAAGAATA--AA-GTCAA-TGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAA-CAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCG-TATGA---CAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCA-AAATTGTTGG---CCTT-TCATGCTACAAAAAAAGTGGCACAAA-CCAT-GATTCATA-GGCGTTAGAACTGTTT-TTTATAA--------GGGGCGGCGG---CAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCAAAA----CT--TTAAT------TAATAATGGCAAG-----GAAAAAATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGTG--GGGGGGG-----GG-T-TA-AAA-CTT----C--CAAAAC-TAG--CACCCCCTAC--CCACCACC----ACCACCTATACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTCT-AGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTCATTGAAGAATTGATA-T--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA--ATCCA-TTAT-TTTGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAACTTT-GTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGTTGTACTTTCAACATGTAAACATT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGA-T-ATCTTTGTATTCTCTA-CATGT-TGT-CATGTGCT------T--CTA-C--T-GT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCA---TTATTTTGTATAT-------TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCCCCCG--------------CCTTTCTCGTTCAA-TT--CAAAA-TG-TA-GTAGTAGTGAT-TACA--------------TTG----TACT-------------------T----------TCGGA----GGTAC--A--------AACGGCCACTTT-TTAGGCCTCTC--GGATCCTAG--CTTTACC----ATAA-T-------------AA---------------TCCTGTTTGC-TG-CCACTGGAA-------ATATCTGTTAATT-ATT-TTT-----GGACG-------ATTATTATCTTAAATGAG----------TTAATAATGGCGATGT-ATACATTAtggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAA-TT--C--AAATG-TA-GTAGTAGTGAACTTCA-AATTTCTAAAGTGTTGCC--TACTGT-ATACATGTACATGTACT----------TA-GA---GGTTACAAA--------AAC-G-CA---T-TTTAGC--C------GTCCTA---CA-TACC----ATGATT-------------AA--------------ATCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT-------TA-A--ATAACGTCCAAAAATTA-AAAAT-T-CAGTGCTTGCCAATAAGAAAT---GTATTAC--C-A-GCG-ATTTATAATCATGGTAAATG--CTAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT-------TA-A---T-ACGTC--AAAATTA-AAA---TTCAGTGC-TGCCAATAAG-AAT---GTA--TT-AACA-GCG-ATTTATAA-CAAGGT-AATG--CTAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGATGTA-AA--CTT----CTAC----C-TAGCCC--------C--CCACC-AC----G--------Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCA-----CATTTGT-TTTA-AAGATTGAAGATATAAAT-AATAA
gi|15 : GGGGGGGGGGCAA-A-TATAGCTCTTAGAGCT-T----T-T-G--C--------C--CCCCC-CCCTTCG--------GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTAtaccatatga
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CA---------TA-A--AT----------------------T-CAGTGC-TGCAAATAAG-AAT---GTA--
gi|18 : --ATTCA-TTAT-TTTATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA----T-GT-CTCCAA--T
gi|19 : TT-ATT-TTT-----AGATG------TATTTCTA--TTAAATGAG--------------TAATGGCAATGT-ATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT-------TATA--AT-ACGTCCAAAAAATA-AAA---T-TAGTGC-TGCAAATAAG-AATA--GTA--AC-AA-A-GTG-ATTTAT---CATAAT-A--G--CTAGGA-----GA-GGCTAAAT--GG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAGAAT----GT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAGG-A--GAAT-CT--TTTA-C-AAAGTTTTGACTAGACGGAA--TTGGA--GACAGAA----A---------CTT-ATG-CAA-AAAG--TTTTAA-GT-AAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAA-TCTTTGAC-CTCTACTATGCTA--TGCTATTT-G-----A---CAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-G-CCCA-A--TTGT-GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA--CAA-GAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGGGGGGGGGGGGGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCACAA----CT--TTA-T------TAATA-TG-CAAG--C--AACAA--TAAAA--TAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG-T-TA-AAC-CTT----CT--------TAG--C--------C--CAACT-C-----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAAT--TTGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTG---GTCTTTTCAACAT----ACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCTC--AATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-G--ATTCT-CTCACCCCCC--CTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAA-TT--C--AA-TGTTA-GTAGTAGTGTTCTTTC-AATTT-TCAAGTGTTG-A--TACTGT-ATACA-----GTGTAAT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC---AATCCTAG---GTTACC--TAATGA-T-------------A----------------TTTTGTTTGC-TG--GACTG--A-------AT---TTTTATTTAATT-TTT-----GGACG------TATTTTTA--TTAAATGGG----------T--ATAATGACGATGT-ATACACTAcaat
gi|3 : CTTCTG----GATA--AGTGGGATT-TTATCACCTCCATGCCCTCCC--------------TCGGTCTC-TTAAAGTTACC--AA-----ACGTGATAATGCT-TTCACGATGGTTCAA-TGTTG-GACTAATGTAATGCAGT---GTGTACTTTAGGAGGTATAGGA---AGGTAC--AGTGTACAGAAC-GCCA---GATTA-GC--CTCGAGGACGCTAGGCCGTTATCATTAAAAA-TCACGTTTGTTACAAA--------------TTCTTATTTGCATGTCTACGG--AGAGAAAGAT---TTTGTTTT-ATTATTTAGAGAGAACGGTGGAATAGAATTA--TTAAATAAGGGAGGGTATTT--ATA--GGCGATGTAATACAC
gi|3 : actgtag-TGCAAATAAG-AATTT-GTA--AC-AA-ACGTG-ATTTTTAAT---GAT-AACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACATT---GAACCATCGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT-CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGAT-GGGTTGACAGAGTTATAATCGTGTTACTATATGACAACAAAG--AA--AAAGT-AA-TGGAT--TTGAATCTAACATA-T----ATTAATAACGCACA---------------GGTAA-CAT-CTTTTGAC-CTGC-CCAT--TAATTGCTACTT-GAC-TGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCCACA--CTGT-GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG---CAAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAACTATTTAATCTCCATTAGT--TGGCAATTCC--GAAAA------A--TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG-T-AA-AGC-TCT----CTAC----C-TAG--C--------C--CC-CA-CC----GC-------GCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGATA-TTCCTTT--------TACATCATTAC-AGTG-GTATtttgagtagaaggaagatgggttgacagagttataatcgtgttactatatgacaacaaagaaaaagtaatggatttgaatctaacatatattaataacgcacaggtaacatcttttgacctgcccattaattgctacttgactgatgacatctgtacctaacgcaatatacatacaaaacatagcagattacactttgctttattcagcttccgttccatggctagaaaaaacgtcccacactgtggctctcatcctacaaaaaaagtggcacaaaaccaaagatattggcgtagagcttttcgtttaaatggtcgcaggggggcgggcaaaaaaaaatcaagctgaatgtaggaggggcgcaaagaactatttaatctccattagttggcaattccgaaaaattaatctaaccaacgacgtaatacaccacttgtgctgctggttgtggggagggggaaagggtggcacaaccttctaaacaactcaacgactgtagtggttgtgacggtaaagctctctacctagcccccaccgcgcttctacgcccctgttcatatgacaaagactgggtgaatgatttgttcaagaagtagtaggcggactgggagggtccagaagattgatattccttttacatcattacagtggtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagacaT------TAATA-TGGCAAG--C--AAAAA---AAAA---AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---TA-AAC-TTA----TA-C----C-TAGC-C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGATA-T--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA--CTCCA-TTAT-TTTATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-AA----CT--T-AAT------TAATA-TGGCAAG--CAAGAAAA--AAAAA--TAAAA-----TAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG-CGTA-AAC--TT----CT-C----CCTAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAgca
gi|6 : gtTCAA-TT--C--AACTG-TA-GCAGT--TGGTCTTTA-GATCTCTCAAGTGTTG-AC-TACTGT-ATACA------TGTACT----------TAGGATTAAGGTAC--A--------AAC-ACCA---T-TTAGGT--CTC--G-ATCCTAG--CGTTACC----ATGA-T-------------AAATCACTGTGTTACATTCTTATTTGC-AG--TACTG--C-------AT---TT--ATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAA-TCTTGAACTCCCCACTATGCTA--TGCTATT----A-TGA---CAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCAA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAG-GCCATAAAAGCA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT-------------AT-ACGTCCAAAAATTAGAAA---T-CAGTGC-TGCCGATACG-AAT---GTCTTAC-CG-A-GCGTATTTATAATCATG-T-AATG--CT-GGATC---GA-GGCCTAA----GCGT
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGGGG-----T-TA-AAC--TT----CT-G----CATAG--C--------CTCCCACC-TC----A--------GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTCT-AGGATTTGTC---GA-AGC-CTAGGC--AT--GGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 22222222222222 111 11 222 11111111 111 111 111 5555555555555555555555555555555 1 111 3333 1 1 11 1 11 3333 22222 1 22 1 2222 11 55555555555555 1 11 1 333333 1 1 1 2222 111 333333333 1 1 1 1 11 55555555 1 22 1 1 1111111 1 3333333333 2 11 2222222 1 1 1111 1 22222222 1 11 1 22 1 1 2222222 1 333333 44444444444 1 2222 11 222222 22222 222 111 1 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 1111111 11 33333333333333 22222222222 2222222222222 2222222222222222 111 111111 1 111 222222 1 333 1 1111 33333333 11 11 11111 111 111111 1111 11 333333 1 11 11 11 222 33333 1 1 1 11 11 222 11 1 11 11 1 1 1 2222 11 11 77777777777777 1 11111 1111 1 1111111 3333 4444444444444444444444 2222 33333333333 11111 11 2222 11 0000000000000000000000000000000000000000 1 222 4444444444 111 22222 2222222 11 4444444444444 1
lowQualScore : 6 55 99 6 6 6 99 88888888888888 6 222 6 88 6 5 1 5 333 77777777 6 6 333 4 6 2 99 111 6 1 777 2 6666666666666666666666666666666 6 7 0 3 7 666 6 7 5555 3 6 3 88 2 88 7 2222 99999 3 00 3 6 2222 88 77777777777777 4 44 3 666666 3 3 3 2222 666 999999999 3 0 3 9 0 0 0 9 2 33 11111111 0 33 0 0 9999999 0 4444444444 3 0 33 3 2222222 0 0 3 4444 0 22222222 0 3 2 88 3 00 3 3 6 6 7777777 3 888888 44444444444 55 0 8 1111 33 3 3 333333 88 22222 666 111 8 0 1 5555555 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 8888888 5 11 00000000000000 00000000000 66 0 5 7777777777777 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 333333 0 111 0 4444 66666666 88 44 3 1 1 1 1 55555 8 222 6 6 111111 0 0 8 8888 33 000000 0 33 6 88 0 88 6 0 333 55555 5 22 5 5 77 88 000 66 1 1 5 88 88 1 5 5 5 8888 7 7 88 6 7 88 88888888888888 1 3 8 22222 9999 8 0 1 0 8888888 5 5555 8 7777777777777777777777 0000 11111111111 8 77777 3 11 0 4444 11 0 4444444444444444444444444444444444444444 0 555 3333333333 777 66 8 8 00000 3333333 1 11 6666666666666 3 0
lowQualScore : . .. .. . . . .. .............. . ... . .. . . . . ... ........ . . ... . . . .. ... . . ... . ............................... . . . . . ... . . .... . . . .. . .. . .... ..... . .. . . .... .. .............. . .. . ...... . . . .... ... ......... . . . . . . . . . .. ........ . .. . . ....... . .......... . . .. . ....... . . . .... . ........ . . . .. . .. . . . . ....... . ...... ........... .. . . .... .. . . ...... .. ..... ... ... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . ....... . .. .............. ........... .. . . ............. . ................ .. ... ...... . . . . ... . . ...... . ... . .... ........ .. .. . . . . . ..... . ... . . ...... . . . .... .. ...... . .. . .. . .. . . ... ..... . .. . . .. .. ... .. . . . .. .. . . . . .... . . .. . . .. .............. . . . ..... .... . . . . ....... . .... . ...................... .... ........... . ..... . .. . .... .. . ........................................ . ... .......... ... .. . . ..... ....... . .. ............. . .
lowQualScore : 7 88 22 7 7 7 22 33333333333333 7 222 7 33 7 7 3 7 666 77777777 7 7 555 2 7 2 22 777 7 0 000 5 3333333333333333333333333333333 7 3 7 3 3 777 7 3 3333 3 7 3 33 0 33 3 3333 77777 3 77 3 7 7777 33 33333333333333 0 00 3 000000 3 3 3 7777 333 111111111 2 0 5 2 0 0 0 2 5 88 55555555 0 88 0 0 5555555 0 5555555555 2 0 88 2 8888888 0 0 2 8888 0 22222222 5 2 5 00 3 00 3 3 7 7 3333333 3 333333 00000000000 88 0 8 2222 88 2 2 000000 88 00000 888 888 8 4 0 6666666 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 2222222 0 55 11111111111111 00000000000 99 1 0 8888888888888 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 000000 0 222 0 8888 22222222 88 22 2 2 0 0 0 00000 0 333 7 7 222222 8 8 0 8888 88 555555 0 88 7 33 7 33 7 7 333 77777 0 00 5 0 55 00 555 55 0 0 5 00 00 0 5 5 5 3333 3 3 33 7 3 33 33333333333333 0 3 0 00000 8888 0 8 0 0 4444444 0 6666 0 6666666666666666666666 4444 00000000000 0 88888 2 00 8 2222 00 8 0000000000000000000000000000000000000000 0 888 2222222222 555 22 0 0 00000 8888888 4 00 8888888888888 8 0
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-GA----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG--G-GGGGGGG-GGG------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGGNGA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTNTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-GN----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG--GGGGGGGGG-GGG------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATA-ATGGT-ACGT----AAATAA-AAAATT-CAGTGC-TGCAAATAAG-AATCCTGTA--ACTAA-A-GTG-ATTTAT---CATGAT-AACG--CTAGATTC---GA-GGCCTAAT--GGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAGAACT---GTCGAAGGACATTATCAACTTTTG--AA--TTAAGCAA--G---GAGGG---GGAGGAG---GAATGCC-ACTGA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATT---------CTGTAT-ACAA-AAAGAATA--AA-GTCAA-TGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAA-CAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCGTA---TGACAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCA-AAATTGTTGG---CCTT-TCATGCTACAAAAAAAGTGGCACAAA-CCAT-GATTCATA-GGCGTTAGAACTGTTT-TTTATAA-------GGGGCGG-CGG------CAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCAAAA----CT--TTAAT------TAATAATGGCAAG-----GAAAAAATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGTG--GGGGGGG-----GG-T-TA-AAA-CTT----C--CAAAAC-TAG--CACCCCCTAC--CCACCACC----ACCACCTATACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTCT-AGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTCATTGAAGAATTGATA-T--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA--ATCCA-TTAT-TTTGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAACTTT-GTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGTTGTACTTTCAACATGTAAACATT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGA-T-ATCTTTGTATTCTCTA-CATGT-TGT-CATGTGCT------T--CTA-C--T-GT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCA---TTATTTTGTATAT-------TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCCCCCG--------------CCTTTCTCGTTCAA-TT--CAAAA-TG-TA-GTAGTAGTGAT-TACA--------------TTG----TACT-------------------T----------TCGGA----GGTAC--A--------AACGGCCACTTT-TTAGGCCTCTC--GGATCCTAG--CTTTACC----ATAA-T-------------AA---------------TCCTGTTTGC-TG-CCACTGGAA-------ATATCTGTTAATT-ATT-TTT-----GGACG-------ATTATTATCTTAAATGAG----------TTAATAATGGCGATGT-ATACATTAtggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAA-TT--C--AAATG-TA-GTAGTAGTGAACTTCA-AATTTCTAAAGTGTTGCC--TACTGT-ATACATGTACATGTACT----------TA-GA---GGTTACAAA--------AAC-G-CA---T-TTTAGC--C------GTCCTA---CA-TACC----ATGATT-------------AA--------------ATCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT-------TA-A--ATAACGTCCAAAAATTA-AAAATT-CAGTGCTTGCCAATAAGAAAT---GTATTAC--C-A-GCG-ATTTATAATCATGGTAAATG--CTAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT-------TA-A---T-ACGTC--AAAATTA-AAA--TTCAGTGC-TGCCAATAAG-AAT---GTA--TT-AACA-GCG-ATTTATAA-CAAGGT-AATG--CTAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGATGTA-AA--CTT----CTAC----C-TAGCCC--------C--CCACC-AC----G--------Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCA-----CATTTGT-TTTA-AAGATTGAAGATATAAAT-AATAA
gi|15 : GGGGGGGGGGCAA-A-TATAGCTCTTAGAGCT-T----T-T-G--C--------C--CCCCC-CCCTTCG--------GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTAtaccatatga
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CA---------TA-A--AT---------------------T-CAGTGC-TGCAAATAAG-AAT---GTA--
gi|18 : --ATTCA-TTAT-TTTATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA----T-GT-CTCCAA--T
gi|19 : TT-ATT-TTT-----AGATG------TATTTCTA--TTAAATGAG--------------TAATGGCAATGT-ATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT-------TATA--AT-ACGTCCAAAAAATA-AAA--T-TAGTGC-TGCAAATAAG-AATA--GTA--AC-AA-A-GTG-ATTTAT---CATAAT-A--G--CTAGGA-----GA-GGCTAAAT--GG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAGAAT----GT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG-GA--GAAT-CT--TTTA-C-AAAGTTTTGACTAGACGGAA--TTGGA--GACAGAA----A---------CT-TATG-CAA-AAAG--TTTTAA-GT-AAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAA-TCTTTGAC-CTCTACTATGCTA--TGCTATTT-G-------ACAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-G-CCCA-A--TTGT-GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA--CAA-GAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGG--GGGGGGGGG-GGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCACAA----CT--TTA-T------TAATA-TG-CAAG--C--AACAA--TAAAA--TAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG-T-TA-AAC-CTT----CT--------TAG--C--------C--CAACT-C-----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAAT--TTGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTG---GTCTTTTCAACAT----ACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCTC--AATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-G--ATTCT-CTCACCCCCC--CTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAA-TT--C--AA-TGTTA-GTAGTAGTGTTCTTTC-AATTT-TCAAGTGTTG-A--TACTGT-ATACA-----GTGTAAT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC---AATCCTAG---GTTACC--TAATGA-T-------------A----------------TTTTGTTTGC-TG--GACTG--A-------AT---TTTTATTTAATT-TTT-----GGACG------TATTTTTA--TTAAATGGG----------T--ATAATGACGATGT-ATACACTAcaat
gi|3 : CTTCTG----GATA--AGTGGGATT-TTATCACCTCCATGCCCTCCC--------------TCGGTCTC-TTAAAGTTACC--AA-----ACGTGATAATGCT-TTCACGATGGTTCAA-TGTTG-GACTAATGTAATGCAGT---GTGTACTTTAGGAGGTATAGGA---AGGTAC--AGTGTACAGAAC-GCCA---GATTA-GC--CTCGAGGACGCTAGGCCGTTATCATTAAAAA-TCACGTTTGTTACAAA--------------TTCTTATTTGCATGTCTACGG--AGAGAAAGAT---TTTGTTTT-ATTATTTAGAGAGAACGGTGGAATAGAATTA--TTAAATAAGGGAGGGTATTT--ATA--GGCGATGTAATACAC
gi|3 : actgtag-TGCAAATAAG-AATTT-GTA--AC-AA-ACGTG-ATTTTTAAT---GAT-AACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACATT---GAACCATCGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT-CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGAT-GGGTTGACAGAGTTATAATCGTGTTACTATATGACAACAAAG--AA--AAAGT-AA-TGGAT--TTGAATCTAACATA-T----ATTAATAACGCACA---------------GGTAA-CAT-CTTTTGAC-CTGC-CCAT--TAATTGCTACTT-GACTGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCCACA--CTGT-GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG------CAAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAACTATTTAATCTCCATTAGT--TGGCAATTCC--GAAAA------A--TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG-T-AA-AGC-TCT----CTAC----C-TAG--C--------C--CC-CA-CC----GC-------GCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGATA-TTCCTTT--------TACATCATTAC-AGTG-GTATtttgagtagaaggaagatgggttgacagagttataatcgtgttactatatgacaacaaagaaaaagtaatggatttgaatctaacatatattaataacgcacaggtaacatcttttgacctgcccattaattgctacttgactgatgacatctgtacctaacgcaatatacatacaaaacatagcagattacactttgctttattcagcttccgttccatggctagaaaaaacgtcccacactgtggctctcatcctacaaaaaaagtggcacaaaaccaaagatattggcgtagagcttttcgtttaaatggtcgcaggggggcgggcaaaaaaaaatcaagctgaatgtaggaggggcgcaaagaactatttaatctccattagttggcaattccgaaaaattaatctaaccaacgacgtaatacaccacttgtgctgctggttgtggggagggggaaagggtggcacaaccttctaaacaactcaacgactgtagtggttgtgacggtaaagctctctacctagcccccaccgcgcttctacgcccctgttcatatgacaaagactgggtgaatgatttgttcaagaagtagtaggcggactgggagggtccagaagattgatattccttttacatcattacagtggtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagacaT------TAATA-TGGCAAG--C--AAAAA---AAAA---AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---TA-AAC-TTA----TA-C----C-TAGC-C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGATA-T--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA--CTCCA-TTAT-TTTATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-AA----CT--T-AAT------TAATA-TGGCAAG--CAAGAAAA--AAAAA--TAAAA-----TAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG-CGTA-AAC--TT----CT-C----CCTAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAgca
gi|6 : gtTCAA-TT--C--AACTG-TA-GCAGT--TGGTCTTTA-GATCTCTCAAGTGTTG-AC-TACTGT-ATACA------TGTACT----------TAGGATTAAGGTAC--A--------AAC-ACCA---T-TTAGGT--CTC--G-ATCCTAG--CGTTACC----ATGA-T-------------AAATCACTGTGTTACATTCTTATTTGC-AG--TACTG--C-------AT---TT--ATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAA-TCTTGAACTCCCCACTATGCTA--TGCTATT---A----TGACAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCAA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAG-GCCATAAAAGCA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT-------------AT-ACGTCCAAAAATTAGAAA--T-CAGTGC-TGCCGATACG-AAT---GTCTTAC-CG-A-GCGTATTTATAATCATG-T-AATG--CT-GGATC---GA-GGCCTAA----GCGT
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGGGG-----T-TA-AAC--TT----CT-G----CATAG--C--------CTCCCACC-TC----A--------GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTCT-AGGATTTGTC---GA-AGC-CTAGGC--AT--GGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 22222222222222 111 11 222 11111111 111 111 111 5555555555555555555555555555555 1 111 3333 1 1 11 1 11 3333 22222 1 22 1 2222 11 55555555555555 1 11 1 333333 1 1 1 2222 111 333333333 1 1 1 1 11 3333333333 1 22 1 1 1111111 1 3333333333 2 11 2222222 1 1 1111 1 22222222 1 11 1 22 1 1 33333333 4444444 44444444444 1 2222 11 222222 22222 222 111 1 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 1111111 11 33333333333333 22222222222 2222222222222 2222222222222222 111 111111 1 111 222222 1 333 1 1111 33333333 11 11 11111 111 111111 1111 11 333333 1 11 11 11 222 33333 1 1 1 11 11 222 11 1 11 11 1 1 1 2222 11 11 77777777777777 1 11111 1111 1 1111111 3333 4444444444444444444444 2222 33333333333 11111 11 2222 11 0000000000000000000000000000000000000000 1 222 4444444444 111 22222 2222222 11 4444444444444 1
lowQualScore : 6 55 99 6 6 6 99 88888888888888 6 222 6 88 6 5 1 5 333 77777777 6 6 333 4 6 2 99 111 6 1 777 2 6666666666666666666666666666666 6 7 0 3 7 666 6 7 5555 3 6 3 88 2 88 7 2222 33333 3 00 3 6 2222 88 77777777777777 2 44 3 666666 3 3 3 2222 666 999999999 3 0 3 9 0 0 0 9 2 33 5555555555 0 33 0 0 9999999 0 4444444444 3 0 33 3 2222222 0 0 3 4444 0 22222222 0 3 2 88 3 00 3 3 6 6 66666666 3333333 44444444444 55 0 8 1111 33 3 3 333333 88 22222 666 111 8 0 1 5555555 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 8888888 5 11 00000000000000 00000000000 66 0 5 7777777777777 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 333333 0 111 0 4444 66666666 88 44 3 1 1 1 1 55555 8 222 6 6 111111 0 0 8 8888 33 000000 0 33 6 88 0 88 6 0 333 55555 5 22 5 5 77 88 000 66 1 1 5 88 88 1 5 5 5 8888 7 7 88 6 7 88 88888888888888 1 3 8 22222 9999 8 0 1 0 8888888 5 5555 8 7777777777777777777777 0000 11111111111 8 77777 3 11 0 4444 11 0 4444444444444444444444444444444444444444 0 555 3333333333 777 66 8 8 00000 3333333 1 11 6666666666666 3 0
lowQualScore : . .. .. . . . .. .............. . ... . .. . . . . ... ........ . . ... . . . .. ... . . ... . ............................... . . . . . ... . . .... . . . .. . .. . .... ..... . .. . . .... .. .............. . .. . ...... . . . .... ... ......... . . . . . . . . . .. .......... . .. . . ....... . .......... . . .. . ....... . . . .... . ........ . . . .. . .. . . . . ........ ....... ........... .. . . .... .. . . ...... .. ..... ... ... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . ....... . .. .............. ........... .. . . ............. . ................ .. ... ...... . . . . ... . . ...... . ... . .... ........ .. .. . . . . . ..... . ... . . ...... . . . .... .. ...... . .. . .. . .. . . ... ..... . .. . . .. .. ... .. . . . .. .. . . . . .... . . .. . . .. .............. . . . ..... .... . . . . ....... . .... . ...................... .... ........... . ..... . .. . .... .. . ........................................ . ... .......... ... .. . . ..... ....... . .. ............. . .
lowQualScore : 7 88 22 7 7 7 22 33333333333333 7 222 7 33 7 7 3 7 666 77777777 7 7 555 2 7 2 22 777 7 0 000 5 3333333333333333333333333333333 7 3 7 3 3 777 7 3 3333 3 7 3 33 0 33 3 3333 00000 3 77 3 7 7777 33 33333333333333 0 00 3 000000 3 3 3 7777 333 111111111 2 0 5 2 0 0 0 2 5 88 0000000000 0 88 0 0 5555555 0 5555555555 2 0 88 2 8888888 0 0 2 8888 0 22222222 5 2 5 00 3 00 3 3 7 7 00000000 3333333 00000000000 88 0 8 2222 88 2 2 000000 88 00000 888 888 8 4 0 6666666 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 2222222 0 55 11111111111111 00000000000 99 1 0 8888888888888 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 000000 0 222 0 8888 22222222 88 22 2 2 0 0 0 00000 0 333 7 7 222222 8 8 0 8888 88 555555 0 88 7 33 7 33 7 7 333 77777 0 00 5 0 55 00 555 55 0 0 5 00 00 0 5 5 5 3333 3 3 33 7 3 33 33333333333333 0 3 0 00000 8888 0 8 0 0 4444444 0 6666 0 6666666666666666666666 4444 00000000000 0 88888 2 00 8 2222 00 8 0000000000000000000000000000000000000000 0 888 2222222222 555 22 0 0 00000 8888888 4 00 8888888888888 8 0
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATA-ATGGT-ACGT----AAATAA-AAAATT-CAGTGC-TGCAAATAAG-AATCCTGTA--ACTAA-A-GTG-ATTTAT---CATGAT-AACG--CTAGATTC---GA-GGCCTAAT--GGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAGAACT---GTCGAAGGACATTATCAACTTTTG--AA--TTAAGCAA--G---GAGGG---GGAGG-AG--GAATGCC-ACTGA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATT---------CTGTAT-ACAA-AAAGAATA--AA-GTCAA-TGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAA-CAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCGTA----TGACAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCA-AAATTGTTGG---CCTT-TCATGCTACAAAAAAAGTGGCACAAA-CCAT-GATTCATA-GGCGTTAGAACTGTTT-TTTATAA--------GGGGCGGCGG-------CAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCAAAA----CT--TTAAT------TAATAATGGCAAG-----GAAAAAATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGTG--GGGGGGG-----GG-T-TA-AAA-CTT----C--CAAAAC-TAG--CACCCCCTAC--CCACCACC----ACCACCTATACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTCT-AGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTCATTGAAGAATTGATA-T--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA--ATCCA-TTAT-TTTGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAACTTT-GTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGTTGTACTTTCAACATGTAAACATT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGA-T-ATCTTTGTATTCTCTA-CATGT-TGT-CATGTGCT------T--CTA-C--T-GT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCA---TTATTTTGTATAT-------TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCCCCCG--------------CCTTTCTCGTTCAA-TT--CAAAA-TG-TA-GTAGTAGTGAT-TACA--------------TTG----TACT-------------------T----------TCGGA----GGTAC--A--------AACGGCCACTTT-TTAGGCCTCTC--GGATCCTAG--CTTTACC----ATAA-T-------------AA---------------TCCTGTTTGC-TG-CCACTGGAA-------ATATCTGTTAATT-ATT-TTT-----GGACG-------ATTATTATCTTAAATGAG----------TTAATAATGGCGATGT-ATACATTAtggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAA-TT--C--AAATG-TA-GTAGTAGTGAACTTCA-AATTTCTAAAGTGTTGCC--TACTGT-ATACATGTACATGTACT----------TA-GA---GGTTACAAA--------AAC-G-CA---T-TTTAGC--C------GTCCTA---CA-TACC----ATGATT-------------AA--------------ATCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT-------TA-A--ATAACGTCCAAAAATTA-AAAATT-CAGTGCTTGCCAATAAGAAAT---GTATTAC--C-A-GCG-ATTTATAATCATGGTAAATG--CTAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT-------TA-A---T-ACGTC--AAAATTA-AAA--TTCAGTGC-TGCCAATAAG-AAT---GTA--TT-AACA-GCG-ATTTATAA-CAAGGT-AATG--CTAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGATGTA-AA--CTT----CTAC----C-TAGCCC--------C--CCACC-AC----G--------Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCA-----CATTTGT-TTTA-AAGATTGAAGATATAAAT-AATAA
gi|15 : GGGGGGGGGGCAA-A-TATAGCTCTTAGAGCT-T----T-T-G--C--------C--CCCCC-CCCTTCG--------GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTAtaccatatga
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CA---------TA-A--AT---------------------T-CAGTGC-TGCAAATAAG-AAT---GTA--
gi|18 : --ATTCA-TTAT-TTTATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA----T-GT-CTCCAA--T
gi|19 : TT-ATT-TTT-----AGATG------TATTTCTA--TTAAATGAG--------------TAATGGCAATGT-ATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT-------TATA--AT-ACGTCCAAAAAATA-AAA--T-TAGTGC-TGCAAATAAG-AATA--GTA--AC-AA-A-GTG-ATTTAT---CATAAT-A--G--CTAGGA-----GA-GGCTAAAT--GG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAGAAT----GT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG-GA--GAAT-CT--TTTA-C-AAAGTTTTGACTAGACGGAA--TTGGA--GACAGAA----A---------CT-TATG-CAA-AAAG--TTTTAA-GT-AAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAA-TCTTTGAC-CTCTACTATGCTA--TGCTATTT-G-A-------CAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-G-CCCA-A--TTGT-GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA--CAA-GAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGG----GGGGGGGGGGGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCACAA----CT--TTA-T------TAATA-TG-CAAG--C--AACAA--TAAAA--TAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG-T-TA-AAC-CTT----CT--------TAG--C--------C--CAACT-C-----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAAT--TTGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTG---GTCTTTTCAACAT----ACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCTC--AATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-G--ATTCT-CTCACCCCCC--CTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAA-TT--C--AA-TGTTA-GTAGTAGTGTTCTTTC-AATTT-TCAAGTGTTG-A--TACTGT-ATACA-----GTGTAAT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC---AATCCTAG---GTTACC--TAATGA-T-------------A----------------TTTTGTTTGC-TG--GACTG--A-------AT---TTTTATTTAATT-TTT-----GGACG------TATTTTTA--TTAAATGGG----------T--ATAATGACGATGT-ATACACTAcaat
gi|3 : CTTCTG----GATA--AGTGGGATT-TTATCACCTCCATGCCCTCCC--------------TCGGTCTC-TTAAAGTTACC--AA-----ACGTGATAATGCT-TTCACGATGGTTCAA-TGTTG-GACTAATGTAATGCAGT---GTGTACTTTAGGAGGTATAGGA---AGGTAC--AGTGTACAGAAC-GCCA---GATTA-GC--CTCGAGGACGCTAGGCCGTTATCATTAAAAA-TCACGTTTGTTACAAA--------------TTCTTATTTGCATGTCTACGG--AGAGAAAGAT---TTTGTTTT-ATTATTTAGAGAGAACGGTGGAATAGAATTA--TTAAATAAGGGAGGGTATTT--ATA--GGCGATGTAATACAC
gi|3 : actgtag-TGCAAATAAG-AATTT-GTA--AC-AA-ACGTG-ATTTTTAAT---GAT-AACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACATT---GAACCATCGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT-CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGAT-GGGTTGACAGAGTTATAATCGTGTTACTATATGACAACAAAG--AA--AAAGT-AA-TGGAT--TTGAATCTAACATA-T----ATTAATAACGCACA---------------GGTAA-CAT-CTTTTGAC-CTGC-CCAT--TAATTGCTACTT-G-ACTGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCCACA--CTGT-GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG-------CAAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAACTATTTAATCTCCATTAGT--TGGCAATTCC--GAAAA------A--TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG-T-AA-AGC-TCT----CTAC----C-TAG--C--------C--CC-CA-CC----GC-------GCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGATA-TTCCTTT--------TACATCATTAC-AGTG-GTATtttgagtagaaggaagatgggttgacagagttataatcgtgttactatatgacaacaaagaaaaagtaatggatttgaatctaacatatattaataacgcacaggtaacatcttttgacctgcccattaattgctacttgactgatgacatctgtacctaacgcaatatacatacaaaacatagcagattacactttgctttattcagcttccgttccatggctagaaaaaacgtcccacactgtggctctcatcctacaaaaaaagtggcacaaaaccaaagatattggcgtagagcttttcgtttaaatggtcgcaggggggcgggcaaaaaaaaatcaagctgaatgtaggaggggcgcaaagaactatttaatctccattagttggcaattccgaaaaattaatctaaccaacgacgtaatacaccacttgtgctgctggttgtggggagggggaaagggtggcacaaccttctaaacaactcaacgactgtagtggttgtgacggtaaagctctctacctagcccccaccgcgcttctacgcccctgttcatatgacaaagactgggtgaatgatttgttcaagaagtagtaggcggactgggagggtccagaagattgatattccttttacatcattacagtggtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagacaT------TAATA-TGGCAAG--C--AAAAA---AAAA---AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---TA-AAC-TTA----TA-C----C-TAGC-C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGATA-T--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA--CTCCA-TTAT-TTTATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-AA----CT--T-AAT------TAATA-TGGCAAG--CAAGAAAA--AAAAA--TAAAA-----TAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG-CGTA-AAC--TT----CT-C----CCTAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAgca
gi|6 : gtTCAA-TT--C--AACTG-TA-GCAGT--TGGTCTTTA-GATCTCTCAAGTGTTG-AC-TACTGT-ATACA------TGTACT----------TAGGATTAAGGTAC--A--------AAC-ACCA---T-TTAGGT--CTC--G-ATCCTAG--CGTTACC----ATGA-T-------------AAATCACTGTGTTACATTCTTATTTGC-AG--TACTG--C-------AT---TT--ATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAA-TCTTGAACTCCCCACTATGCTA--TGCTATT----A----TGACAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCAA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAG-GCCATAAAAGCA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT-------------AT-ACGTCCAAAAATTAGAAA--T-CAGTGC-TGCCGATACG-AAT---GTCTTAC-CG-A-GCGTATTTATAATCATG-T-AATG--CT-GGATC---GA-GGCCTAA----GCGT
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGGGG-----T-TA-AAC--TT----CT-G----CATAG--C--------CTCCCACC-TC----A--------GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTCT-AGGATTTGTC---GA-AGC-CTAGGC--AT--GGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 1111111111111111111111111111111111111111
lowQualScore : 11 22222222222222 111 11 222 11111111 111 111 111 5555555555555555555555555555555 1 111 3333 1 1 11 1 11 3333 22222 1 22 1 2222 11 55555555555555 1 11 1 333333 1 1 1 2222 111 333333333 1 1 1 1 11 3333333333 1 22 1 1 1111111 1 3333333333 2 11 2222222 1 1 1111 1 22222222 1 11 1 22 1 1 33333333 4444444 44444444444 1 2222 11 222222 22222 222 111 1 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 1111111 11 33333333333333 22222222222 2222222222222 2222222222222222 111 111111 1 111 222222 1 333 1 1111 33333333 11 11 11111 111 111111 1111 11 333333 1 11 11 11 222 33333 1 1 1 11 11 222 11 1 11 11 1 1 1 2222 11 11 77777777777777 1 11111 1111 1 1111111 3333 4444444444444444444444 2222 33333333333 11111 11 2222 11 0000000000000000000000000000000000000000 1 222 4444444444 111 22222 2222222 11 4444444444444 1
lowQualScore : 6 55 99 6 6 6 99 88888888888888 6 222 6 88 6 5 1 5 333 77777777 6 6 333 4 6 2 99 111 6 1 777 2 6666666666666666666666666666666 6 7 0 3 7 666 6 7 5555 3 6 3 88 2 88 7 2222 33333 3 00 3 6 2222 88 77777777777777 2 44 3 666666 3 3 3 2222 666 999999999 3 0 3 9 0 0 0 9 2 33 5555555555 0 33 0 0 9999999 0 4444444444 3 0 33 3 2222222 0 0 3 4444 0 22222222 0 3 2 88 3 00 3 3 6 6 66666666 3333333 44444444444 55 0 8 1111 33 3 3 333333 88 22222 666 111 8 0 1 5555555 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 8888888 5 11 00000000000000 00000000000 66 0 5 7777777777777 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 333333 0 111 0 4444 66666666 88 44 3 1 1 1 1 55555 8 222 6 6 111111 0 0 8 8888 33 000000 0 33 6 88 0 88 6 0 333 55555 5 22 5 5 77 88 000 66 1 1 5 88 88 1 5 5 5 8888 7 7 88 6 7 88 88888888888888 1 3 8 22222 9999 8 0 1 0 8888888 5 5555 8 7777777777777777777777 0000 11111111111 8 77777 3 11 0 4444 11 0 4444444444444444444444444444444444444444 0 555 3333333333 777 66 8 8 00000 3333333 1 11 6666666666666 3 0
lowQualScore : . .. .. . . . .. .............. . ... . .. . . . . ... ........ . . ... . . . .. ... . . ... . ............................... . . . . . ... . . .... . . . .. . .. . .... ..... . .. . . .... .. .............. . .. . ...... . . . .... ... ......... . . . . . . . . . .. .......... . .. . . ....... . .......... . . .. . ....... . . . .... . ........ . . . .. . .. . . . . ........ ....... ........... .. . . .... .. . . ...... .. ..... ... ... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . ....... . .. .............. ........... .. . . ............. . ................ .. ... ...... . . . . ... . . ...... . ... . .... ........ .. .. . . . . . ..... . ... . . ...... . . . .... .. ...... . .. . .. . .. . . ... ..... . .. . . .. .. ... .. . . . .. .. . . . . .... . . .. . . .. .............. . . . ..... .... . . . . ....... . .... . ...................... .... ........... . ..... . .. . .... .. . ........................................ . ... .......... ... .. . . ..... ....... . .. ............. . .
lowQualScore : 7 88 22 7 7 7 22 33333333333333 7 222 7 33 7 7 3 7 666 77777777 7 7 555 2 7 2 22 777 7 0 000 5 3333333333333333333333333333333 7 3 7 3 3 777 7 3 3333 3 7 3 33 0 33 3 3333 00000 3 77 3 7 7777 33 33333333333333 0 00 3 000000 3 3 3 7777 333 111111111 2 0 5 2 0 0 0 2 5 88 0000000000 0 88 0 0 5555555 0 5555555555 2 0 88 2 8888888 0 0 2 8888 0 22222222 5 2 5 00 3 00 3 3 7 7 00000000 3333333 00000000000 88 0 8 2222 88 2 2 000000 88 00000 888 888 8 4 0 6666666 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 2222222 0 55 11111111111111 00000000000 99 1 0 8888888888888 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 000000 0 222 0 8888 22222222 88 22 2 2 0 0 0 00000 0 333 7 7 222222 8 8 0 8888 88 555555 0 88 7 33 7 33 7 7 333 77777 0 00 5 0 55 00 555 55 0 0 5 00 00 0 5 5 5 3333 3 3 33 7 3 33 33333333333333 0 3 0 00000 8888 0 8 0 0 4444444 0 6666 0 6666666666666666666666 4444 00000000000 0 88888 2 00 8 2222 00 8 0000000000000000000000000000000000000000 0 888 2222222222 555 22 0 0 00000 8888888 4 00 8888888888888 8 0
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATA-ATGGT-ACGT----AAATAA-AAAATT-CAGTGC-TGCAAATAAG-AATCCTGTA--ACTAA-A-GTG-ATTTAT---CATGAT-AACG--CTAGATTC---GA-GGCCTAAT--GGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAGAACT---GTCGAAGGACATTATCAACTTTTG--AA--TTAAGCAA--G---GAGGG---GGAGG-AG--GAATGCC-ACTGA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATT---------CTGTAT-ACAA-AAAGAATA--AA-GTCAA-TGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAA-CAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCGTA----TGACAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCA-AAATTGTTGG---CCTT-TCATGCTACAAAAAAAGTGGCACAAA-CCAT-GATTCATA-GGCGTTAGAACTGTTT-TTTATAA--------GGGGCGGCGG-------CAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCAAAA----CT--TTAAT------TAATAATGGCAAG-----GAAAAAATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGTG--GGGGGGG-----GG-T-TA-AAA-CTT----C--CAAAAC-TAG--CACCCCCTAC--CCACCACC----ACCACCTATACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTCT-AGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTCATTGAAGAATTGATA-T--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA--ATCCA-TTAT-TTTGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAACTTT-GTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGTTGTACTTTCAACATGTAAACATT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGA-T-ATCTTTGTATTCTCTA-CATGT-TGT-CATGTGCT------T--CTA-C--T-GT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCA---TTATTTTGTATAT-------TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTG--ATTCTTCTCACCCCCC--CCCCCCG--------------CCTTTCTCGTTCAA-TT--CAAAA-TG-TA-GTAGTAGTGAT-TACA--------------TTG----TACT-------------------T----------TCGGA----GGTAC--A--------AACGGCCACTTT-TTAGGCCTCTC--GGATCCTAG--CTTTACC----ATAA-T-------------AA---------------TCCTGTTTGC-TG-CCACTGGAA-------ATATCTGTTAATT-ATT-TTT-----GGACG-------ATTATTATCTTAAATGAG----------TTAATAATGGCGATGT-ATACATTAtggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAA-TT--C--AAATG-TA-GTAGTAGTGAACTTCA-AATTTCTAAAGTGTTGCC--TACTGT-ATACATGTACATGTACT----------TA-GA---GGTTACAAA--------AAC-G-CA---T-TTTAGC--C------GTCCTA---CA-TACC----ATGATT-------------AA--------------ATCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT-------TA-A--ATAACGTCCAAAAATTA-AAAATT-CAGTGCTTGCCAATAAGAAAT---GTATTAC--C-A-GCG-ATTTATAATCATGGTAAATG--CTAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT-------TA-A---T-ACGTC--AAAATTA-AAA--TTCAGTGC-TGCCAATAAG-AAT---GTA--TT-AACA-GCG-ATTTATAA-CAAGGT-AATG--CTAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGATGTA-AA--CTT----CTAC----C-TAGCCC--------C--CCACC-AC----G--------Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCA-----CATTTGT-TTTA-AAGATTGAAGATATAAAT-AATAA
gi|15 : GGGGGGGGGGCAA-A-TATAGCTCTTAGAGCT-T----T-T-G--C--------C--CCCCC-CCCTTCG--------GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTAtaccatatga
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CA---------TA-A--AT---------------------T-CAGTGC-TGCAAATAAG-AAT---GTA--
gi|18 : --ATTCA-TTAT-TTTATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA----T-GT-CTCCAA--T
gi|19 : TT-ATT-TTT-----AGATG------TATTTCTA--TTAAATGAG--------------TAATGGCAATGT-ATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT-------TATA--AT-ACGTCCAAAAAATA-AAA--T-TAGTGC-TGCAAATAAG-AATA--GTA--AC-AA-A-GTG-ATTTAT---CATAAT-A--G--CTAGGA-----GA-GGCTAAAT--GG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAGAAT----GT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG-GA--GAAT-CT--TTTA-C-AAAGTTTTGACTAGACGGAA--TTGGA--GACAGAA----A---------CT-TATG-CAA-AAAG--TTTTAA-GT-AAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAA-TCTTTGAC-CTCTACTATGCTA--TGCTATTT-G-A-------CAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-G-CCCA-A--TTGT-GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA--CAA-GAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGG----GGGGGGGGGGGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCACAA----CT--TTA-T------TAATA-TG-CAAG--C--AACAA--TAAAA--TAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG-T-TA-AAC-CTT----CT--------TAG--C--------C--CAACT-C-----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAAT--TTGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTG---GTCTTTTCAACAT----ACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCTC--AATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-G--ATTCT-CTCACCCCCC--CTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAA-TT--C--AA-TGTTA-GTAGTAGTGTTCTTTC-AATTT-TCAAGTGTTG-A--TACTGT-ATACA-----GTGTAAT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC---AATCCTAG---GTTACC--TAATGA-T-------------A----------------TTTTGTTTGC-TG--GACTG--A-------AT---TTTTATTTAATT-TTT-----GGACG------TATTTTTA--TTAAATGGG----------T--ATAATGACGATGT-ATACACTAcaat
gi|3 : CTTCTG----GATA--AGTGGGATT-TTATCACCTCCATGCCCTCCC--------------TCGGTCTC-TTAAAGTTACC--AA-----ACGTGATAATGCT-TTCACGATGGTTCAA-TGTTG-GACTAATGTAATGCAGT---GTGTACTTTAGGAGGTATAGGA---AGGTAC--AGTGTACAGAAC-GCCA---GATTA-GC--CTCGAGGACGCTAGGCCGTTATCATTAAAAA-TCACGTTTGTTACAAA--------------TTCTTATTTGCATGTCTACGG--AGAGAAAGAT---TTTGTTTT-ATTATTTAGAGAGAACGGTGGAATAGAATTA--TTAAATAAGGGAGGGTATTT--ATA--GGCGATGTAATACAC
gi|3 : actgtag-TGCAAATAAG-AATTT-GTA--AC-AA-ACGTG-ATTTTTAAT---GAT-AACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACATT---GAACCATCGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT-CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGAT-GGGTTGACAGAGTTATAATCGTGTTACTATATGACAACAAAG--AA--AAAGT-AA-TGGAT--TTGAATCTAACATA-T----ATTAATAACGCACA---------------GGTAA-CAT-CTTTTGAC-CTGC-CCAT--TAATTGCTACTT-G-ACTGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCCACA--CTGT-GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG-------CAAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAACTATTTAATCTCCATTAGT--TGGCAATTCC--GAAAA------A--TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG-T-AA-AGC-TCT----CTAC----C-TAG--C--------C--CC-CA-CC----GC-------GCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGATA-TTCCTTT--------TACATCATTAC-AGTG-GTATtttgagtagaaggaagatgggttgacagagttataatcgtgttactatatgacaacaaagaaaaagtaatggatttgaatctaacatatattaataacgcacaggtaacatcttttgacctgcccattaattgctacttgactgatgacatctgtacctaacgcaatatacatacaaaacatagcagattacactttgctttattcagcttccgttccatggctagaaaaaacgtcccacactgtggctctcatcctacaaaaaaagtggcacaaaaccaaagatattggcgtagagcttttcgtttaaatggtcgcaggggggcgggcaaaaaaaaatcaagctgaatgtaggaggggcgcaaagaactatttaatctccattagttggcaattccgaaaaattaatctaaccaacgacgtaatacaccacttgtgctgctggttgtggggagggggaaagggtggcacaaccttctaaacaactcaacgactgtagtggttgtgacggtaaagctctctacctagcccccaccgcgcttctacgcccctgttcatatgacaaagactgggtgaatgatttgttcaagaagtagtaggcggactgggagggtccagaagattgatattccttttacatcattacagtggtataatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagacaT------TAATA-TGGCAAG--C--AAAAA---AAAA---AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---TA-AAC-TTA----TA-C----C-TAGC-C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGATA-T--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA--CTCCA-TTAT-TTTATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-AA----CT--T-AAT------TAATA-TGGCAAG--CAAGAAAA--AAAAA--TAAAA-----TAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG-CGTA-AAC--TT----CT-C----CCTAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAgca
gi|6 : gtTCAA-TT--C--AACTG-TA-GCAGT--TGGTCTTTA-GATCTCTCAAGTGTTG-AC-TACTGT-ATACA------TGTACT----------TAGGATTAAGGTAC--A--------AAC-ACCA---T-TTAGGT--CTC--G-ATCCTAG--CGTTACC----ATGA-T-------------AAATCACTGTGTTACATTCTTATTTGC-AG--TACTG--C-------AT---TT--ATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAA-TCTTGAACTCCCCACTATGCTA--TGCTATT----A----TGACAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCAA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAG-GCCATAAAAGCA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT-------------AT-ACGTCCAAAAATTAGAAA--T-CAGTGC-TGCCGATACG-AAT---GTCTTAC-CG-A-GCGTATTTATAATCATG-T-AATG--CT-GGATC---GA-GGCCTAA----GCGT
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGGGG-----T-TA-AAC--TT----CT-G----CATAG--C--------CTCCCACC-TC----A--------GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTCT-AGGATTTGTC---GA-AGC-CTAGGC--AT--GGA
blockSeqs : . CA C T G . AG TATAA A CCA G AT T T C A TT TTACCG C T AAT G A T GC CTC G C TCT C CTGTACACTGTACCTTCCTATACCTCCT C T T T CC C T CATC . G . GT T CC A GCAT TGATA . CA T C GAT TT TTATAATCGTGTTA A GA C TTTT A . A TT CTA TATT T . T A A . T A G AT TGACTGAT C AC . C AATAT A ACATA A T AT T GTTCC . C T CA . GGGCT A T C AC A C A . G C TGGTCGCA GGGGGGG TCAAGC GA T C AGAA AT T A CTCCAT A TCC T T A A A GCTTA . C G . CTGC . G . TGTGT GAAAGGGTGGCACAA G CAA T ATGGATG T TC AGAGCTTT CCC TC . CTTCG C CCCTGTTCAT TG ACA CTGG C A T CAA . A GGACTG . CA . TTC . CA AT T G G G G GGGGG A GAA T C TTCTCT . ACA . ATTT . . C . AG C . A G AT . . . . TGG AG G C . . . T . . . TGAC T T GG C T TG TCTCTCTTTTCTTT C . G ACC ATG C A C CGATGGT G GAC A GTGTGTACTTTAGGAGGTA TTAA AGTGTACAG . GA A . GAGG GC ATTAAAAATCACGTTTGTTACAAAT A TCT AGAGAAAG . TT A A AGAGA GTGGAAT T . GGAGGGTATTT A A
blockSeqs : . . C . . . . TAAA . CCA . . . . C . A TTACC . . AAT G . T . . . C T C TGTATTCTAGTC C . . . C . . . . . . . C . A T GA . . . . TT . A . G . AA . . . T T TGA T . A . . . . A G . TGA . C . . ATG . CAT A G . T TGTTC . . T A . CTC G T C AG . . . . . C TGGG . TCAC GA . C . . T A . A CAA A T C C G CGTAA . . A . . . T . . TGGGCAA . A T GTGGCG . C CTACC CC . . GC . TC . . ATT C T . . . . AT . . . AT . C T T A G G G GGGGG . A . . AGATTG . AC . CT . . . . . . . . . . . . . . . . G . . C TGT . T C AATTTC G CC . TGTACATGTACT G AAA . T G . A . ATGATAAATCACTGTGTTACAT . G A . TG . . . T T . T A .
blockSeqs : . . C . . . . TAAA . CCA . . . . A . . TTAAC . . AAT A . C . . . T . . . . . . . . . . . . AT . . . . AT . AT . . . . TGT . . . A . CT . . . . TA A . . . . . . . A C . T A . T AGTAA . . A . . . T . . GAA . A G GCAAA . C CTACC C . . G . CC . . T . T . . . . AT . . . T . . A . A T T C TGA . A . . AGCTTT . . . T . . . C CTG . C C GATCTC G AC . GTGTAAT G A . T G . G . ATGATTAAA . T C . . . . . T A . T G .
blockSeqs : . . C . . . . TAA . C . . . . A . . ACAA . . AA A . T . . . C . . C . . . . A . . . A . . . T . . GGA . A T GGGGT . T CTCCC C . . G . CC . . T . . . . . . AT . C . . AAT . . C . . G . AATTT . A . TGTACT A A . T . . . . TAATGATA . . . T T . . .
blockSeqs : . . . . . . . A . . . . . . A . . ACAA . . . . . . . . . . . . . . . . . A . . . ACGGT . T CTGCA C . . G . CC . . T . . .
blockSeqs : . C . . . . . GCAA . . TACC C . . G . CC . .
blockSeqs : T . . CT C . . A
blockSeqCons : ** C* TAAA********** CCA ** *** NCANC*** AAT A* C**** *** T** NGTAA** *********** *** **** GCGGT** CTACC********* C********** G************ CC************** AT**** AGCTTT C**** NTG* GATNTC* AC** GTGTACT*************** G*** T**** ** G*** ATGATAAA******************************** T****** ** T************
originalCons : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--AT-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTA--AC-AA-A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--C--GAAAA--TAAAA--TAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG-T-TA-AAC-CTT----CT-C----C-TAG--C--------C--CCACC-CC----G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TT--C--AA-TG-TA-GTAGTAGTGNTCTTCA-GATTTCTCAAGTGTTG-A--TACTGT-ATACA-----GTGTACT----------TAGGA---GGGTAC--A--------AAC-GCCA---T-TTAGGC--CTC--GGATCCTAG--CGTTACC--TAATGA-T-------------AA--------------TTCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACG------TATTTTTA--TTAAATGAG----------T--ATAATGGCGATGT-ATACACTA
finalCons : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATTTAAA----------T-ACGTCCAAAAATTA-AAA--T-CAGTGC-TGCAAATAAG-AAT---GTANCANC---A-GCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAGC----GAAAA---AAAAT--AAAANTAAATAAANANGTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGGT--TA-AAC-CTTCTACC---------TAGC----------C--CCACC-CCG------------GCTTC-TACGCCC--------------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGCAT----GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTG--ATTCTTCTCACCCCCC--CCCTCCC--------------CCTNTCTC-TTCAA-TTC----AANTG-TA-GTAGTAGTGNTCTTCAGATNTC-TCAAGTGTTGAC--TACTGT-ATACAGTGTACT---------------TAGGAG---GGTAC--A--------AAC-GCCAT----TTAGGC--CTCG---ATCCTAG--CGTTACCATGATAAA--------------------------------TCTTGTTTGC-TG-CTACTG--A-------AT---TTTTATTT-ATT-TTT-----GGACGT------ATTTTTA--TTAAATGAGT------------ATAATGGCGATGT-ATACACTA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT
Alignments
lowQualScore : 111111111111111
lowQualScore : 11 22222222222222 111 11 222 111 111 111 111 5555555555555555555555555555555 1 111 3333 1 1 11 1 11 3333 22222 1 22 1 2222 11 55555555555555 1 11 1 333333 1 1 1 2222 111 333333333 1 1 1 1 11 3333333333 1 22 1 1 1111111 1 3333333333 2 11 2222222 1 1 1111 1 22222222 1 11 1 22 1 1 33333333 4444444 44444444444 1 2222 11 222222 11 2222222222 1111111 33333333333 1111 111 1111 11111 3333333333333333333 1 2222222222222222 11 111 11111111 22222222 2222222222222222 111 111111 1 111 222222 1 333 1 1111 33333333 11 11 11111 111 111111 1111 11 333333 1 11 11 11 222 33333 1 1 1 11 11 222 11 1 11 11 1 1 1 4444 1 1 222222222222222 2 1 111111 11 333333 2222 11 1 111 1111 11 6666666666666666666 22 33333333 1 11 111
lowQualScore : 6 55 99 6 6 6 99 88888888888888 6 222 6 88 6 5 1 5 333 1 444 6 333 4 6 2 99 111 6 1 777 2 6666666666666666666666666666666 6 7 0 3 7 666 6 7 5555 3 6 3 88 2 88 7 2222 33333 3 00 3 6 2222 88 77777777777777 2 44 3 666666 3 3 3 2222 666 999999999 3 0 3 9 0 0 0 9 2 33 5555555555 0 33 0 0 9999999 0 4444444444 3 0 33 3 2222222 0 0 3 4444 0 22222222 0 3 2 88 3 00 3 3 6 6 66666666 3333333 44444444444 55 0 8 1111 33 3 3 333333 88 11 8 4444444444 1 5 1 7777777 8 8 1 11111111111 4444 111 0 3 4444 66666 5555555555555555555 5 999 1 9999999999999999 33 000 66 88888888 66 55 7777 33333333 5 1111111111111111 77 000 444444 0 1 8 0 444 8 8 333333 0 111 0 4444 66666666 88 44 3 1 1 1 1 55555 8 222 6 6 111111 0 0 8 8888 33 000000 0 33 6 88 0 88 6 0 333 55555 5 22 5 5 77 88 000 66 1 1 5 88 88 1 5 5 5 2222 4 5 5 000000000000000 1 0 0 1 3 1 2 444444 2 88 2 777777 2 2 4444 33 0 2 777 3 7777 8888 33 3333333333333333333 77 99999999 0 3 33 777 0
lowQualScore : . .. .. . . . .. .............. . ... . .. . . . . ... . ... . ... . . . .. ... . . ... . ............................... . . . . . ... . . .... . . . .. . .. . .... ..... . .. . . .... .. .............. . .. . ...... . . . .... ... ......... . . . . . . . . . .. .......... . .. . . ....... . .......... . . .. . ....... . . . .... . ........ . . . .. . .. . . . . ........ ....... ........... .. . . .... .. . . ...... .. .. . .......... . . . ....... . . . ........... .... ... . . .... ..... ................... . ... . ................ .. ... .. ........ .. .. .... ........ . ................ .. ... ...... . . . . ... . . ...... . ... . .... ........ .. .. . . . . . ..... . ... . . ...... . . . .... .. ...... . .. . .. . .. . . ... ..... . .. . . .. .. ... .. . . . .. .. . . . . .... . . . ............... . . . . . . . ...... . .. . ...... . . .... .. . . ... . .... .... .. ................... .. ........ . . .. ... .
lowQualScore : 7 88 22 7 7 7 22 33333333333333 7 222 7 33 7 7 3 7 666 0 333 7 555 2 7 2 22 777 7 0 000 5 3333333333333333333333333333333 7 3 7 3 3 777 7 3 3333 3 7 3 33 0 33 3 3333 00000 3 77 3 7 7777 33 33333333333333 0 00 3 000000 3 3 3 7777 333 111111111 2 0 5 2 0 0 0 2 5 88 0000000000 0 88 0 0 5555555 0 5555555555 2 0 88 2 8888888 0 0 2 8888 0 22222222 5 2 5 00 3 00 3 3 7 7 00000000 3333333 00000000000 88 0 8 2222 88 2 2 000000 88 00 0 0000000000 0 6 0 4444444 0 0 7 77777777777 2222 777 3 2 2222 77777 1111111111111111111 7 333 9 2222222222222222 22 888 99 11111111 99 11 0000 11111111 7 7777777777777777 99 000 333333 0 0 0 8 000 0 0 000000 0 222 0 8888 22222222 88 22 2 2 0 0 0 00000 0 333 7 7 222222 8 8 0 8888 88 555555 0 88 7 33 7 33 7 7 333 77777 0 00 5 0 55 00 555 55 0 0 5 00 00 0 5 5 5 5555 0 5 5 000000000000000 0 0 0 0 2 0 5 888888 5 00 5 888888 5 5 0000 88 0 5 555 2 8888 5555 88 2222222222222222222 33 00000000 0 2 88 000 2
consensus : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--ATA-CGTCCAAAAATTA-AAA--T-CAGTGCT-GCAAATAAGAA-T---GTANCAAC-AGCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--CGAAAA-AA-----AATAAAANTAAATAAANAGNTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG---------T-TAAACCTTCT--ACCTAG--C--------C--CC-ACC-C--CG--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTTTGACGATNTTAGTGATTCTTCTCACCCCCCCCCCCCGTCTCTCTTTTCTTTCCTCTCTCGTTCAATTC-AANTGTAGTAGTAGTGATCTTCAAATTTCTCAAGTGTTGACTACTGTATACA-----GTGTACTTAGGA---GGGTAC--AAAC-GCCA---TTTAGGCCTC---GATCCTAGCGTTACC--ATGA-TAAA--------------TCTTGTTTGCTG-NACTG--AAT---TTTTATTT-ATTTTTGGACGTATTTTTA--TTAAATGAGT--ATAATGGCGATGTATACACTA
Reference ( family-211 ) : GTAGT-GTA--TACATC-GCCATT-AT-A-CT--CATT-------TA-A--ATA-CGTCCAAAAATTA-AAA--T-CAGTGCT-GCAAATAAGAA-T---GTANCANC-AGCG-ATTTATAATCATGAT-AACG--CTAGGATC---GA-GGCCTAAT--GGCGTT--------TGTACCTC----T-ACCT--C--AAAGTACATGTACACGGCAT-ACATTAGT-C-AACATTTGAGAACC---GT-GAAGAACATTATCA-CTTTTG--AACTTTAAGAGA--GAGGGAGGG--TGGAGG-GA--GAAT-CC-ACTTA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATA---------CTGTATGACAA-AAAG--TA--AA-GT-AA-TGGAT--T-GAAT-TGACATA-TG---A--AATAACGCACATGT-AAGATGTAAAGGATAA-CAA-TCTTTGAC-CTCCACCATGCTA--TGCTATTT-G-A----TGACAT-TGT--C-TAA-GC-A---T-AC-TACAAA-A----T---GCAGATTACACTTT-CTTT--TCAGCTTCTTG-T--CATGGCTA-GAAAAAA-GTCCCA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAGTGGCACAAAACCAA-GAT-CATA-GGCGT-AGAACTGTTTCTTTAAAATGG----GGGGGGGGGGG-------CAAAAAAAAA---TCAA-C--TGAATGTGAGGA-GGGGCACAA----CT--TTAAT------TAATA-TGGCAAG--CGAAAA-AA-----AATAAAANTAAATAAANANGTAA--TACA-CC-ACTAT-----------GTG----TG---GATGTG----GGGG-----GGGG--GG--A------------C-CTTCTAAA--ACTCAACGAATGTTGGGGGGGGGGGCGG---------T-TAAACCTTCT--ACCTAG--C--------C--CC-ACC-C--CG--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---GAAG-ATTGATA-T--CTTT--------TACATC-TTAC-CGTGTGTATCTGNGGGNGNGGGNGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATAAGCTTTAACATGTATAT-GATAAGTT-ACAGAT--ATAAC--T-GT-CTCCAA--TCCTTCTGGT--GCGTAGT--CCAAACTCCG---GTATTTTCAACAT----ACATTACATGGTATANNGATAAGTTAACAGATTCATAACTTTGTCCCCCAATCTCCTTCTGGTCATGGGCANTAGCCAAAACTCTGGNTNTACTTTCAACATGTAAACATTTNGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATATTAGTGATTCTTCTCACCCCCCCCCTCCC--------------CCTNTCTC-TTCAATTC-AANTGTAGTAGTAGTGNTCTTCAGATNTCTCAAGTGTTGACTACTGTATACA-----GTGTACTTAGGA---GGGTAC--AAAC-GCCA---TTTAGGCCTC---GATCCTAGCGTTACC--ATGA-TAAA--------------TCTTGTTTGCTGCTACTG--AAT---TTTTATTT-ATTTTTGGACGTATTTTTA--TTAAATGAGT--ATAATGGCGATGTATACACTA
gi|1 : GTAGTTGTAA-TACATAAGCCATT-AT-AACT--CATTAATCTAATA-ATGGTA-CGT----AAATAA-AAAATT-CAGTGCT-GCAAATAAGAA-TCCTGTAACTAA-AGTG-ATTTAT---CATGAT-AACG--CTAGATTC---GA-GGCCTAAT--GGCGTT--------TGTACTCC----TTACCTTCC--AAAGTA-ATGTACATGCAAT-ACATTTGTTC-AACATTTGAGAACT---GTCGAAGGACATTATCAACTTTTG--AA--TTAAGCAA--G---GAGGG---GGAGG-AG--GAATGCC-ACTGA-CCAGAGTTTTGACTAGAAGGAA--T-GGA--GACAGAGTTATT---------CTGTAT-ACAA-AAAGAATA--AA-GTCAA-TGGATCTT-GAAT-TGACATAATGGACA--ATTAACGCACATGTTAAGATGTAAAGGATAA-CAAATCTTTGAC-TTCTCTCATGCTA--TGCTATTTCGTA----TGACAT-TGC--CCTAA-GCCA---T-AC-TACAAA-AACCAT---GCAGATTACACTTT-CTTT--CTCTCTTCT-G-T--CATGGGTATGAAAAAA-GTCCCA-AAATTGTTGG---CCTT-TCATGCTACAAAAAAAGTGGCACAAA-CCAT-GATTCATA-GGCGTTAGAACTGTTT-TTTATAA--------GGGGCGGCGG-------CAAAAAAAAAAAATCAT-CCTTGAATGTG-GGA-GGAGCAAAA----CT--TTAAT------TAATAATGGCAAG---GAAAA-AATAAAAAATAAAATTAAAAAAACAGCTAAACTACAACC-ACTATCGTGTGTGTGTGTG----TGTTTGATGTGTGGAGGGG-----GGGG--CG--A------------C-CTATAAAA--ACTGAACGAGTG--GGGGGGG-----GG---------T-TAAAACTTCCAAAACTAG--CACCCCCTAC--CC-ACCAC--CACCACCTATACTTC-TACGCCATAAACT--------A--TA---AAGA--T---GTAAGATTTTCCTCT-AGGA-TTGTC---GACAGT-CTATGCA-ATG-GGAGGTGTCATTGAAGAATTGATA-T--CTTTGTATTCTCTACATG-TTGT-CATGTGCTTCTACTGTTTCCGAT-------GTGTG-TAATTCAA--ATCCA-TTAT-TTTGTATATTT--ACATGTATATGGATAAGTTAACAGATTCATAACTTT-GTCCTCCAATCTCCTTCTGGTCAGCTTAGT--CAAAACTCTGGTTGTACTTTCAACATGTAAACATT
gi|1 : tGGGAGGTG-TCATTGAAGAATTGA-T-ATCTTTGTATTCTCTA-CATGT-TGT-CATGTGCT------T--CTA-C--T-GT-TTCCGA--T-------GT--GTGTAAT--TCAAA-TCCA---TTATTTTGTATAT-------TTACATG-TATATGGATAAGTTAACAGATTCATAACTTTGTCCTCCAATCTCCTTCTGGTCA---GC-TTAGTCAAAACTCTGGTTGTACTTTCAACATGTAAACATTTGGACCTTGATATGATATTACTACATTGTGTCACCGTCTTCTT----GATTTTAGTGATTCTTCTCACCCCCCCCCCCCG--------------CCTTTCTCGTTCAATTCAAAATGTAGTAGTAGTGAT-TACA-------------TTG--TACT------------------TTCGGA----GGTAC--AAACGGCCACTTTTTAGGCCTCTCGGATCCTAGCTTTACC--ATAA-T-AA--------------TCCTGTTTGCTGCCACTGGAAATATCTGTTAATT-ATTTTTGGACG-ATTATTATCTTAAATGAGTTAATAATGGCGATGTATACATTAtggaccttgatatgatattactacattgtgtcaccgtcttcttgattttagtgattcttctcaccccccccccccgcctttctcgttcaattcaaaatgtagtagtagtgattacattgtactttcggaggtacaaacggccactttttaggcctctcggatcctagctttaccataataatcctgtttgctgccactggaaatatctgttaattatttttggacgattattatcttaaatgagttaataatggcgatgtatacattacagt
gi|10 : tgtagttgtaatacataagccattataactcattaatctaataatggtacgtaaataaaaaattcagtgctgcaaataagaatcctgtaactaaagtgatttatcatgataacgctagattcgaggcctaatggcgtttgtactccttaccttccaaagtaatgtacatgcaatacatttgttcaacatttgagaactgtcgaaggacattatcaacttttgaattaagcaaggagggggaggaggaatgccactgaccagagttttgactagaaggaatggagacagagttattctgtatacaaaaagaataaagtcaatggatcttgaattgacataatggacaattaacgcacatgttaagatgtaaaggataacaaatctttgacttctctcatgctatgctatttcgtatgacattgccctaagccatactacaaaaaccatgcagattacactttctttctctcttctgtcatgggtatgaaaaaagtcccaaaattgttggcctttcatgctacaaaaaaagtggcacaaaccatgattcataggcgttagaactgttttttataaggggcggcggcaaaaaaaaaaaatcatccttgaatgtgggaggagcaaaactttaattaataatggcaaggaaaaaataaaaaataaaattaaaaaaacagctaaactacaaccactatcgtgtgtgtgtgtgtgtttgatgtgtggaggggggggcgacctataaaaactgaacgagtggggggggggttaaaacttccaaaactagcaccccctacccaccaccaccacctatacttctacgccataaactataaagatgtaagattttcctctaggattgtcgacagtctatgcaatCAATTC-AAATGTAGTAGTAGTGAACTTCAAATTTCTAAAGTGTTGCCTACTGTATACATGTACATGTACTTA-GA---GGTTACAAAAAC-G-CA---TTTTAGCC------GTCCTA-CA-TACC--ATGATTAAA--------------TCTTGTcagt
gi|11 : T-GTA--TAC-TC-GCCATT-AT-A-CT--CATT-------TA-A--ATAACGTCCAAAAATTA-AAAATT-CAGTGCTTGCCAATAAGAAAT---GTATTACC-AGCG-ATTTATAATCATGGTAAATG--CTAGGATC---GAGGGCCTAA
gi|12 : gGTAGT-GTA--TACATC-GCCATTTAT-A-CT--CATT-------TA-A---TA-CGTC--AAAATTA-AAA--TTCAGTGCT-GCCAATAAGAA-T---GTATTAAC-AGCG-ATTTATAA-CAAGGT-AATG--CTAGGATC---GG-AGCCTAA
gi|13 : TGT-----------GTG----TG---GAGGGG----GAGG-----GGGGTGGGCAA------------C-CTTCTTAA--ACTCAACAAATGT--GGGGGTGGGATGGA--------TGTAAA-CTTCT--ACCTAGCCC--------C--CC-ACC-A--CG--------Gc
gi|14 : gtgtgtgtgtgGGGGGGGGGGGGGGGGGGGGGGTGATCGTTCCA-----CATTTGT-TTTA-AAGATTGAAGATATAAAT-AATAA
gi|15 : GGGGGGGGGGCAAATATAGCTCT-TAGAGCTTTT--GCC-----C--------C--CC-CCC-CTTCG--------GCTTC-TACGC------TC--------ATGTG---AAGAATT---GTAtaccatatga
gi|17 : GTAGT-GTACATACATC-GCCATT-AT-A-CT--CA---------TA-A--AT---------------------T-CAGTGCT-GCAAATAAGAA-T---GTA
gi|18 : --ATTCA-TTAT-TTTATAAA---TGACATGTATAT-GATAAGTT-ACAGAT--ATA----T-GT-CTCCAA--T
gi|19 : TT-ATTTTTAGATGTATTTCTA--TTAAATGAG----TAATGGCAATGTATACACTA
gi|2 : GTAGT-GTA--TACAT--GTCATT-AT-A-CT--CATT-------TATA--ATA-CGTCCAAAAAATA-AAA--T-TAGTGCT-GCAAATAAGAA-TA--GTAACAA--AGTG-ATTTAT---CATAAT-A--G--CTAGGA-----GA-GGCTAAAT--GG-GTT--------TGTAT-TC----T-AG-T--C--AAAGTACATGTACATGGCAT-AAAA-AGT-C-AA-ATTTGAGAAT----GT-GAAGAACATTATCA-ATTTTG--AATTTTAAGAGA--GAGGGAGG---TGGAAG-GA--GAAT-CT--TTTA-C-AAAGTTTTGACTAGACGGAA--TTGGA--GACAGAA----A---------CT-TATG-CAA-AAAG--TTTTAA-GT-AAATGGAT--T-GAAT-T--CATA-TG---A--AATAACGCACATGT-AAGATGTAA-GGATAAACAA-TCTTTGAC-CTCTACTATGCTA--TGCTATTT-G-A-------CAT-TGT--C-TAA-GC-A---TGAC-TAGAAA-A----T---GC-GATTACACTTTTCTTT--TCAGCTTCTTG-T---ATGGCTA-GAAAAAA-G-CCCA-A--TTGT-GGGGGC--T-TTATGCTAC--AAAATGTGG-ACAAA--CAA-GAT-CATAAGGCAT-AGAACTGTTTCTCTAAAATGG----GGGGGGGGGGGGGGGGGGCAAAAAAAAA---T--A----TGAATGTGAGGATGGGGCACAA----CT--TTA-T------TAATA-TG-CAAG--CAACAATAA-----AATAAAAATAAATAAAAAGCTTA--TACA-CC-ACTAT-----------GTG----TG---GAAG-G----GGGG-----GGGG--GA--A------------CGCTTCTAA----CTCAACGAATGTTGGGGGGGGGGGGGG---------T-TAAACCTTCT-----TAG--C--------C--CA-ACT-C---G--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAG-TATTCCTCTTAGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AAAG-ATTGATAAT--CTAT--------TACAT--TTAC-TGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGTG-TCATTCAA--ATTCA-TTAT-TTTATTAGCTTTAACATGTATAT-GATAAGTT-AC-GAT--ATAAT--TTGT-CTCCAA--TCCTTCTGGT--ATGGAGTAGCCAAACTCTG---GTCTTTTCAACAT----ACATTACATGGTATAATGATAAGTTA-CAGATT-ATAACTTTGTCTC--AATT--CTTCTGGTCATGGGCAGTAGCCAAAACTCTGGGTCT-TTTTCAA--TGTAAA--TTTTGACCTTGATATGAT-TT-CTAT-TTGTGTCACCGTCTTCTTTGACAATATTAG-GATTCT-CTCACCCCCCCTCTCTCTCTCTCTTTTCTTTCCTCTCTC-TTCAATTC-AATGTTAGTAGTAGTGTTCTTTCAATTT-TCAAGTGTTGA-TACTGTATACA-----GTGTAATTAGGA---GGGTAC--AAAC-GCCA---TTTAGGCCTC---AATCCTAG-GTTACCTAATGA-T--A--------------TTTTGTTTGCTG-GACTG--AAT---TTTTATTTAATTTTTGGACGTATTTTTA--TTAAATGGGT--ATAATGACGATGTATACACTAcaat
gi|3 : T-GCAAATAAGAA-TTT-GTAACAAA-CGTG-ATTTTTAAT---GAT-AACGGCCTAGCGTCCTCGA-GGC-TAATCTGGCGTTCTGTACACTGTACCTTCCTAT-ACCT--CCTAAAGTACA----CACTGCATTACATTAGT-CCAACATT---GAACCATCGT-GAA-AGCATTATCA-CGTTTGGTAACTTTAAGAGACCGAGGGAGGGCATGGAGGTGATAAAAT-CCCACTTATCCAGAAGTTTGAGTAGAAGGAAGAT-GGGTTGACAGAGTTATAATCGTGTTACTATATGACAACAAAG--AA--AAAGT-AA-TGGAT--TTGAATCTAACATA-T----ATTAATAACGCACA---------------GGTAA-CAT-CTTTTGAC-CTGC-CCAT--TAATTGCTACTT-G-ACTGATGACATCTGTACC-TAACGC-AATAT-ACATACAAA-A----CATAGCAGATTACACTTTGCTTTATTCAGCTTCC-G-TTCCATGGCTA-GAAAAAACGTCCCACA--CTGT-GG---C--TCTCATCCTACAAAAAAAGTGGCACAAAACCAAAGAT--ATT-GGCGT-AGAGCT-TTTCGTTTAAATGGTCGCAGGGGGGCGGG-------CAAAAAAAAA---TCAAGC--TGAATGT-AGGA-GGGGCGCAAAGAACTATTTAATCTCCATTAGT--TGGCAATTCCGAAAA-A--------TTAATCTAACCAACGACGTAA--TACA-CC-ACT-T-----------GTGCTGCTG---GTTGTG----GGGA-----GGGG--GA--AAGGGTGGCACAAC-CTTCTAAACAACTCAACGACTGT-AGTGGTTGTGACGG---------T-AAAGCTCTCT--ACCTAG--C--------C--CC--CA-C--CGC-------GCTTC-TACGC------CCCTGTTCATA--TGACAAAGA--CTGGGTGA------------ATGATTTGTTCAAGA-AGTAGTAGGCGGACTGGGAGG-GTCCA-GAAG-ATTGATA-TTCCTTT--------TACATCATTAC-AGTG-GTAT
gi|4 : actgtaggtgtattacatcgcctataaataccctcccttatttaataattctattccaccgttctctctaaataataaaacaaaatctttctctccgtagacaT------TAATA-TGGCAAG--CAAAAA-AA-----AA-AAAAATAA-TAAATA-------TACA-CC-ACTAT-----------ATG----TG---TGTGTG----TAGG-----G---------A------------C-CTTCTAAA---CTCAACGAAGGTTGGGGGGGGGGGCAA---------T--AAAC-TTAT--ACCTAG--C--------C--CCCACC-C--CG--------GCTTC-TACGC------CC--------A--TG---AAGA--T---GTAAGCTTTTCCTCT-AGGATTTGTC---GA-AGT-CTAGGC--AT--GGAGG-GTC---AACG-ATTGATA-T--CTTT--------TACATC-TTACATGTGTATATCTGTGTGTGCGGGTGA---------G-TAATTCAA--CTCCA-TTAT-TTTATaatctgctatgtgtaagctgtcaaaatccaatgcatcgtcatagccactccctcccacactgtaaaatatagagtaagtataacattcagatataacttagtctccataaaacaaattccagtatctggtgatctaagttaggttcaacaaactatggagatcttgttctaattccgtgattactttgatttccttctgtggagaatgatattacgtaaacataccagatgtgttcaacaccgtcttc
gi|5 : AAAAGAAA---TCA--C--TGAATGTGAGAG-GGGGCA-AA----CT--T-AAT------TAATA-TGGCAAG--CAAGAA-AA-----AA--AAATAAAATAAAAAAGTAA--TACA-CCCACTAT-----------GTG----TG---TGTGTG----TGTGTGTGTGGAG--GG--A------------C-CTTCTAAA--ACTCAACGAAGGTGGGGGGGGGGGGTGG---------CGTAAA-CTTCT--CCCTAG--C--------C--CC-ACC-C--CG--------GCTTC-TACGC------CC--------A--TG---AAgca
gi|6 : gtTCAATTC-AACTGTAGCAGT--TGGTCTTTAGATCTCTCAAGTGTTGACTACTGTATACA------TGTACTTAGGATTAAGGTAC--AAAC-ACCA---TTTAGGTCTC---GATCCTAGCGTTACC--ATGA-TAAATCACTGTGTTACATTCTTATTTGCAG-TACTG--CA-----TTTATTT-ATTTTTGGACGTATTTTTA--TTAAATGAGT--ATAGTGGCCATG
gi|7 : --AATAACGCACATGT-AAGAAGTAAAGGATAA-CAA-TCTTGAACTCCCCACTATGCTA--TGCTATT----A----TGACAT-TGTC-C-TAA-GA-A---T-AC-TACAAACA----T---GCAGATTACACTTT-CTTT--TCAGCT--TTGTT--CATGACTA-GAAAAAA-GTCCAA-A--TTGT-GG---C--T-TCATGCTACGAAAAAAG-GCCATAAAAGCA
gi|8 : GTAGT-GTA--GACATC-GCCAT--ATGA-TTAGCATT-------------ATA-CGTCCAAAAATTAGAAA--T-CAGTGCT-GCCGATACGAA-T---GTCTTACCGAGCGTATTTATAATCATG-T-AATG--CT-GGATC---GA-GGCCTAA----GCGT
gi|9 : agt--A------------C-CTTCTAAA--ACTCAACGAATATTGGGGGGGGGG-------------T-TAAAC-TTCT--GCATAG--C--------CTCCC-ACC-T--CA--------GCTTCCTACCC------CC--------A--TG---AAGA--T---GTAAGCTTTTCGTCT-AGGATTTGTC---GA-AGC-CTAGGC--AT--GGA
1 sequences could not be aligned to this reference sequence:
Unaligned ( gi|16 ): GTGTGTGTGTGTGTATGTGTTGGGGGGGGGGGGGGGGGGTGGTCTGCTTTAAACAAGAAAACAAAT