lowQualScore : 1111111111
lowQualScore : 4444444444444444444444444 11111 9999999999999999999999999999999999999999999999999 1111 222222222 1111111111111 77777777777777777 11 2222 1 33333333 33 22 1 111 1111 4444 111111111 6666666666666666666666 22222222222 111111 1 11111 11 2 33333 1 222222 1 777777777777777777777777777777777 11 1 11 22222222 3333333333333333333 1111 111 66666666666666 2222 1 1111 1 1 1 11 1111 333333333 1 222222 22222 22 22222 555555555555555555555555555555 2 5555555555
lowQualScore : 9999 5 9999 1111111111111111111111111 22222 5 0000000000000000000000000000000000000000000000000 7 4444 55 2 666666666 6 3 6 5555555555555 7 55555555555555555 11 5555 0 11111111 44 99 6 6 6 6 99 11 6 99999 6 6 1 1 111 5555 99 0000 666666666 6666666666666666666666 3 6 44444444444 999999 3 44444 6 55 6 8 8 6 6 33333 7 888888 0 8 444444444444444444444444444444444 11 8 0 8 0 44 8 0 55555555 6 6 6 66 2222222222222222222 6 3 3 3 9999 777 00000000000000 2 1111 7 4444 0 4 4 0 11 7777 1 222222222 4 6 5 7 4 333333 88888 33 00000 888888888888888888888888888888 0 1111111111
lowQualScore : .... . .... ......................... ..... . ................................................. . .... .. . ......... . . . ............. . ................. .. .... . ........ .. .. . . . . .. .. . ..... . . . . ... .... .. .... ......... ...................... . . ........... ...... . ..... . .. . . . . . ..... . ...... . . ................................. .. . . . . .. . . ........ . . . .. ................... . . . . .... ... .............. . .... . .... . . . . .. .... . ......... . . . . . ...... ..... .. ..... .............................. . ..........
lowQualScore : 6666 7 4444 3333333333333333333333333 55555 0 0000000000000000000000000000000000000000000000000 0 2222 22 2 777777777 7 2 7 7777777777777 3 55555555555555555 00 0000 5 88888888 00 22 7 7 7 0 22 00 7 33333 7 7 7 0 777 0000 22 2222 000000000 8888888888888888888888 2 7 33333333333 222222 2 00000 7 00 7 8 7 0 0 33333 0 888888 0 8 555555555555555555555555555555555 00 0 8 0 0 88 0 8 88888888 7 7 7 44 9999999999999999999 7 2 7 0 8888 555 22222222222222 5 2222 0 8888 0 5 2 0 44 4444 0 000000000 8 7 0 8 6 000000 00000 00 00000 777777777777777777777777777777 0 5555555555
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CC---CCC------------------AAAAAA-----TTAA-TT--G-----GAA-G-AAAA-----A----AATAATT--------------ATAAAGG----TGTCGTACAGTCAGTT---------CA-CGTTAAAT-AC----A-GTCAG--ATGCGATG-----AT--ATAT-ATGATATCTATG--TATAG---TATAAGT---NC---GAGTA-ATAAAAACAATATA--CGG-TTC-ATG-CATAA-CAATA-NTTT-AT--T--GG-TA-ATATCTTGACT---TT--A-TTCN-GAAAG-TTTTT-CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACAT------TCTAATAT---AAAGTTT-CCGGTTA-CGCA-CAAATATGTCCAGC-AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTA------TCATAT-TTTCTAAGCAT---TTCAC----GC--------------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTC-A-TATTCTGAACTTTCCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTC---AT-----TNTA-----TGTATC----GAAGAAATAAACAAAT--T-CCGTTACTGT-TATTCAAAATCAAA-TACACGATATNTATGCTAATAAACGT---------CATTATGTCAGT-ATATCCTATCCTAAAC----GGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAA--AA-GAGAGAGAGANGGACGTNGTTAGGTCATTTGTGATATTTTACTGATA-TA------TATATTGTGCGGATAT
Reference ( gi|2 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CC---CCC------------------AAAAAA-----TTAA-TT--G-----GAA-G-AAAA-----A----AATGATT--------------ATAAATG----TGTCGTGCAGTCAGTT---------CA-CGTTAAAT-AC----A-GTCAG--ATGCTATG-----AT-CATACCATGATATCTATG--TATAA---TAAAAGT---AC---GAGTACATAAAAACAATATA--CAG-TTC-ATG-CACAA-CAATA-ATTT-AT--T--GG-TA-ATATTTTGACT---TT--A-TTCC-GACA--TTTTT-CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACAT------TCTGATAT---AAAGTTT-CCGGTTT-CGCA-CAAATATGTCCAGCAAAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTA------TTATAT-TGTCTAATCAT---TTCAC----AC--------------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAACTTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-ACTTC---AT-----TCTA-----TGTATC----GAAGAAATAAACTAAT--T-CCGTTACTGT-TATCCAAAATCAGA-TACACGATATTTATGTTAATAAACAT---------CATTTTGTCAGT-ATATCCTACCCCAATC----GGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAA--AAGAAAAGAAAAATACACATA---AAGTCATT-GTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CCAAAAAC------------------AAAAAATAGTTTTCA-TT--C-----G---------------------TTATT--------------ATAGAGG----TGCCGTACGTTCAGTT---------CA-CGTTAAAT-AC----A-GTCAGATATGCTGCG---------ATATCA--ATATATATG--TATAG---TA
gi|6 : gtgGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CC---CCC------------------CAAAAA-----TTAA-TT--A-----GAA-GGAAAA-----A----AATAATTTTTCATTCGTTATTATAAAGG----TGTTGTGCAG------------------------AT-AT----A-------------ATG-----AT-------AT-ATATATATG--TACAG---TATAAGT---CC---GAGT-TATAAAAATAATATA--CGG-TTC-ATG-CATAA-CAATA-TTTT-AT--T--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG--TTTTT-CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACAT------TCTAATAT------TTTT-CCGGTTA-CGTA-CAAATATGTGCAGC--AAAAAGTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTA------TCATAT-TTTCTGAGCAT---ATCAC----AC--------------Accccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CC---CCC------------------CAAAAA-----TTAA-TTTAG-----AAACG-AAAA-----A----AATAATTTCTTCACTC-----GTTAATA----TG-CGTACAGTCTGTT---------CAACGTTAAATTGC----ATGTATG--ATGCAATG-----AT--ATAT--TGATATCTATGACTATGGACTTGATAGT---TC---GAGTA-ATGAAAACAATGTA--CGG-T-C-ATG-CATAA--AATATATTT-ATATT--GG--A-AT-TCTTGACTCTTTT--AGTTCC-GGGAGTTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACAT------TCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAtgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|15 : gtgGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CC---CCC------------------aagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|12 : gtgGCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCC---CCC------------------CCAAAA-----TTAATTT--A-----GAA-G--AAA-----A----AATAATT--------------cccccc
gi|10 : GCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CC---CCCCCCCCCTCTCCTAAAAAGAAAAAA------CAG-TT--A-----GAA-G-AAAA-----A----GATtctactcgtt
gi|14 : agtgCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CC---ACC------------------ACAAAA-----tactttccattcgttatcaatgaggtg
gi|8 : tcGGCGTACACATCAATTTGA----CC---C----------------------AGAA-----TTTT-TT--TTTTTTGAA-T-AGAATTTCCATT--CGTTATT--------------ATAAAGG----TGT--TACAGTCAGTT---------CA-CATTAAAT-AC----A-GTCAG--ATGCGATGCTAGAAT-GGT----TGGTATCTATG--TAAAAG--TATAAGTCTGACTCTGAGTA-ATAAAAACAATACA--CAG-TTC-ATG-TTTAA-AAATATCTTT-AT--T--GGTTATATATCTTTACT---TT--A-TTCA-GA-AGTTTTTT-TG-CCA--ATACTTG-----GATAT--TG----ATTGTTGAGTTTCTA-CTTC------A-------AT------C---ATAC---A---TTT-CTGGTTA-CGCA-TAAATATATaa
gi|11 : ccCAATTTGA----CA------------------------AAAAAA-----TTAA-TT--G-----GAA-G-AAAT-----G----AATAATTCTCATTCTCTTTT-ATAAGGG----TGCCGTGTAGTCAGTTAACTGACTTCA-CGTTAAAT-AC----A-TTCAA--ATACTGTG-----AT-a
gi|4 : AA-CT--G-----AAA-A-AAAA-----ATCCCATTCGTT--------------ATTCATGACGGTGTCA--CAGTCAATT---------CA-CGTT-AAC-ACTGTGA-GTTAG--ATGCGATG-----ATACATA--ATGA
gi|3 : ATATCTATG--TATAG---TATAAGT---AC---GAGTA-ATAAAAACAATGTA--CAG-TTC-ATG-CATAA-CAATA-ATTT-AT--T--GG-TA-ATTGTTCGACT---TTTTA-TTCC-GGAAG-TTTTT-C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACAT------TCTAATAT---AAAGTTT-CCGGTTA-CGCA-CAAACATGTCCAAC-AAAAAAGTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTA------TTATAT-TTTCTAGGTAT---TTCAC----ACATGACTACTTTTGTAATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTTCCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatAAGT---CCA--GAGTA-ATAAAAATGATATATGCGG-TTC-ATGACATAAACAATA-TTTTTAT--T--GG-TA-ATATCTTGACT---TT--A-TTTG-GAAG--TTTTT-CG-CCC--ATATTTA--------AT--T-------TGTTGAGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGGTTA-CGCA-CAAATATGTCCAGC
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcAATATA--GAGGTTCTATG-CATAA-CAAT----TT-AT--TATGG-TA-CT--TCTGATT---TT----TTGA-GAAA--GCTTT-AT-TCA--AGTCTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACAT------TCT-ATATGAAAAAGTTTCCCGG--T-CGCAGCAAATAcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|7 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTA------TTATAT-TTTCTAAGCACATATTTACTTTTGT--------------GAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAACT--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-AGTTC---AT-----T--A-----T-TATC----AAAGAAATAAACAAAT--T-CCGTTACTGT-TTTTCAAAATCAAA-TACACGATATGTATGTATGTATACAT---------CATTATGTCAGT-ATATCCTATCCTAAAC----GAAATTGAATTGCTTTG-TGGA-----TCTCTGGaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|4 : CCGGACCTTTACCTCAACTTTTAAGCATTTCACACATGCTTACT--T---TTC-------T--------------AAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAACTTTCCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGAC
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat--------------AAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AACTT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACca
gi|1 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttct--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAACTTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTT---ATTATTGTTTATTGTGTGTATC----GAAGAAATAAACAAAT--TCCCGTAATTGTATAT-CAAAATCAGAGTACAccaagg
gi|9 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaaTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-AGTTC---AT-----TAT------TGTATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGT-TATTCAGAATCAAA-TATACGATATGGATGTTAATAAACAT---------CATTATGTCCGT-ATATCATATCCTAAAC----GGAATTTAATTGCTTTG-TGAA-----TCTCTTGCAAG--A--GAGAGAGAGAGAGACGTT---AGGTCATT-GTGATATTTTACTGATA---------TATATTGTGTAGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-AGTTCATTAT-----TGTA-----TGCATC----GAAAAAATAAACAAAT--T-CCGTTACTGT-TATTCAAAATCATA-TCCACCACATATATG-------GCAT---------CATCATGCCAGT-ATATCCTATCCTGGGC----GGAATT-----GCTTTG-TGAATACGTTCTTTG--AAA--AAtta
gi|1 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttGATATT-ATGCTA-TAAAAGTTCAGTACTGCAGTCTGT-ATT-ATCTCCTAGACCTATCCAAGGGAACTG----GCTTTGGTGAA-----TCTCTGG--------------AAAAATG-ACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATAT
gi|13 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGATATTTATGCTAATAAAAGT---------CACTATCTCAGT-ACATtga
gi|16 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactTGTCAGTTATATC-TATCCAAA-C----GGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAgta
Alignments
lowQualScore : 3333333333333333333 22222222 11111 888888888888888888888888888888888 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 1111 1 22222 111 9999999999999999999999999999999 11 1 222222222222 3333333333 111 1 1111 11 11111 1111 222222222 11111 33333333333333333333 2 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 00000000 666 11111 66 000000000000000000000000000000000 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 6666 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 1 00 88888 0 77 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 7777 0 55555 55 0 444 2222222222222222222222222222222 99 6 6 6 33 6 1 5 5 5 5 222222222222 5 5 1 1 0 8 5555555555 444 1 3 7777 11 8 0 8 8 7 44444 0 6 2222 5 5 666666666 9 1 6 66666 55 66666666666666666666 0 3 777777777777 0
lowQualScore : ... . .... . ................... . ........ ... ..... .. ................................. . . .. . ......... . .. . .... . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... . .. ..... . .. . ....... . .. .. ..... . ........... ...... . ... . . . . . .... . ..... .. . ... ............................... .. . . . .. . . . . . . ............ . . . . . . .......... ... . . .... .. . . . . . ..... . . .... . . ......... . . . ..... .. .................... . . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 22222222 222 11111 11 888888888888888888888888888888888 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 4444 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 0 99 99999 7 99 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 0 00000 44 6 000 7777777777777777777777777777777 22 7 7 7 00 7 5 7 7 7 0 888888888888 0 7 4 7 6 0 0000000000 000 0 6 0000 00 0 8 0 0 5 33333 7 7 1111 7 7 777777777 8 0 7 77777 88 00000000000000000000 7 7 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAGTTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCAT---TTCAC---T----------ACA--------------AGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAACTT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-A----------GTTC---ATTGTATGTATC----GAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAG-AGAGAGAGA-AGACATGGTTAAGTCA-TTGTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TNC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCNGAAAGTTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTAAGCAT---TTCAC--------------GCA--------------AGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTC-A-TATTCTGAACTTTCCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-A----------GTTC---ATTNTATGTATC----GAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAG-AGAGAGAGANGGACGTNGTTAGGTCATTTGTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTAG-----AAACG-AAAA-----A--AAT--A-------------ATTTCTTCACTC-----GTTA-ATATG-CGTACAGTCTGTT---------CAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-AT----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAGTTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAA-GCAT
gi|1 : gtg--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAACTTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTT---ATTGTGTGTATC----GAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaaGATAT-TATGCTA--TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT------------GACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT--A-----GAA-G-AAAA-----A--GAT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT--G-----GAA-G-AAAT-----G--AAT--A-------------ATTCTCATTCTCTTTT-ATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-tactttccattcgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT--A-----GAA-G--AAA-----A--AAT--A-------------ATT--------------
gi|13 : GATATTTATGCTA-ATAAAAGT-CACTAT----CTCAGT-AC-ATtctactcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGA-AGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--G-------------ATT--------------ATAA-ATGTGTCGTGCAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACCA--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCCGACA-TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGC---AAAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCAT---TTCAC--------------ACA--------------AGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAACTTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-A----------CTTC---ATTCTATGTATC----GAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTA-ATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGAAAAGAAAAATACACATA---AAGTCA-TTGTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAA-----A--AAT--AGTTTTCATTCGTTATT--------------ATAG-AGGTGCCGTACGTTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-AT----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAGTTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAA-GTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTAT---TTCACACATGACTACTTTTGTA--------------ATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTTCCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatT--A-------------TTC--------------ATGA-CGGTGTC--ACAGTCAATT---------CA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-ATAA--TGA
gi|4 : aactgaaaaaaaaatcccattcgt--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTTGGAA-GTTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCAT---TTCAC--------------ACATGCTTACTTTTCTAAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAACTTTCCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA-A-AAAA-----A--AATCCATTTT---------ATT--------------ATAATGGGTGTCA-AC-GTCCATT---------CA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-AT-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAGCTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnA--------------AGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AACTT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT--A-----GAA-GGAAAA-----A--AAT--A-------------ATTTTTCATTCGTTATTATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-AT-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAGTTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAA-GTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCAT---ATCAC--------------ACA--------------ccaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-A----------GTTCATTATTGTATGCATC----GAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG--------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAAtgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCACATATTTACTTTT----------GTG--------------AGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAACT--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-A----------GTTC---ATTAT---TATC----AAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATG-TATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT--TTTTTTGAA-T-AGAATTTCCATTCGT--T-------------ATT--------------ATAA-AGGTGT--TACAGTCAGTT---------CA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAAT-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TTCAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-A----------GTTC---ATTAT-TGTATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTA-ATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAG-AGAGAGAGAGAGAC---GTTAGGTCA-TTGTGATATTTTACTG---ATA------TATATTGTGTAGATATa
Alignments
lowQualScore : 11111111111111111111111111111
lowQualScore : 3333333333333333333 22222222 11111 888888888888888888888888888888888 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 1111 1 22222 111 00000000000000000000000000000 11 2 222222222222 3333333333 222 11 11111 1111 222222222 11111 222222222222222222 1 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 00000000 666 11111 66 000000000000000000000000000000000 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 6666 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 33 5 88888 0 77 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 7777 0 55555 3 88 2 111 33333333333333333333333333333 99 6 6 6 00 6 6 0 5 5 5 5 222222222222 5 5 1 1 0 8 5555555555 888 3 11 8 0 8 8 7 44444 0 6 2222 5 5 666666666 9 1 6 66666 55 999999999999999999 3 777777777777 0
lowQualScore : ... . .... . ................... . ........ ... ..... .. ................................. . . .. . ......... . .. . .... . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... .. . ..... . .. . ....... . .. .. ..... . ........... ...... . ... . . . . . .... . ..... . .. . ... ............................. .. . . . .. . . . . . . . ............ . . . . . . .......... ... . .. . . . . . ..... . . .... . . ......... . . . ..... .. .................. . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 22222222 222 11111 11 888888888888888888888888888888888 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 4444 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 77 7 99999 7 99 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 0 00000 2 88 5 777 77777777777777777777777777777 22 7 7 7 88 7 7 0 7 7 7 0 888888888888 0 7 4 7 6 0 0000000000 000 8 00 0 8 0 0 5 33333 7 7 1111 7 7 777777777 8 0 7 77777 88 111111111111111111 3 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCAT---TTC-------AC-------T---ACTTTT-T-AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-A----------GTTCATTATTGTATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGA-AGACAC-GTTAAGTCA-TTGTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCAT---TTC-------AC-------T---AC-------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-A----------GTTCATT---GTATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAGAGAGA-AGACATGGTTAAGTCA-TTGTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTAG-----AAACG-AAAA-----A--AAT--A-------------ATTTCTTCACTC-----GTTA-ATATG-CGTACAGTCTGTT---------CAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-AT----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAG-TTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAA-GCAT
gi|1 : gtg--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAAC-TTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTTATT---GTGTGTATCGAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaaGATAT-TATGCTA--TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT-----------GACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT--A-----GAA-G-AAAA-----A--GAT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT--G-----GAA-G-AAAT-----G--AAT--A-------------ATTCTCATTCTCTTTT-ATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-tactttccattcgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT--A-----GAA-G--AAA-----A--AAT--A-------------ATT--------------
gi|13 : GATATTTATGCTA-ATAAAAGT-CACTAT----CTCAGT-AC-ATtctactcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--G-------------ATT--------------ATAA-ATGTGTCGTGCAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACCA--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCCGACA--TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGC---AAAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCAT---TTC-------AC-----------AC-------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-A----------CTTCATT---CTATGTATCGAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTA-ATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGAAAAGAAAA-ATACAC-ATAAAGTCA-TTGTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAA-----A--AAT--AGTTTTCATTCGTTATT--------------ATAG-AGGTGCCGTACGTTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-AT----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAG-TTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAA-GTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTAT---TTCACACATGAC-------T---ACTTTTGT-AATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTT-CCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatT--A-------------TTC--------------ATGA-CGGTGTC--ACAGTCAATT---------CA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-ATAA--TGA
gi|4 : aactgaaaaaaaaatcccattcgt--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTT-GGAAG-TTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCAT---TTC-------ACACATGCTT---ACTTTTCT-AAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAAC-TTTCCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA-A-AAAA-----A--AATCCATTTT---------ATT--------------ATAATGGGTGTCA-AC-GTCCATT---------CA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-AT-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAG-CTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGACCTTTA------CCTCTA----ATTTT--AAGCAG---TTA-------ACATGT---T---ACTTTTTCTAAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AAC-TT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT--A-----GAA-GGAAAA-----A--AAT--A-------------ATTTTTCATTCGTTATTATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-AT-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAA-GTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCAT---ATC-------AC-----------AC-------Accaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-A----------GTTCATTATTGTATGCATCGAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG--------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAAtgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCACATATTT-------AC-------TTTTGT-------GAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAAC-T--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-A----------GTTCATT---AT---TATCAAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATG-TATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT--TTTTTTGAA-T-AGAATTTCCATTCGT--T-------------ATT--------------ATAA-AGGTGT--TACAGTCAGTT---------CA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAAT-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TT-CAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-A----------GTTCATTATTGTATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTA-ATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAGAGAGAGAGAGAGAC---GTTAGGTCA-TTGTGATATTTTACTG---ATA------TATATTGTGTAGATATa
Alignments
lowQualScore : 3333333333333333333 22222222 11111 888888888888888888888888888888888 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 1111 1 22222 5555555555555555555555555555555 11 2 222222222222 3333333333 11 11111 1111 222222222 11111 2222222222 1 1 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 00000000 666 11111 66 000000000000000000000000000000000 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 6666 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 33 5 88888 0 77 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 7777 0 55555 3 88 2 7777777777777777777777777777777 99 6 6 6 00 6 6 0 5 5 5 5 222222222222 5 5 1 1 0 8 2222222222 11 8 0 8 8 7 44444 0 6 2222 5 5 666666666 9 1 6 66666 55 3333333333 3 3 777777777777 0
lowQualScore : ... . .... . ................... . ........ ... ..... .. ................................. . . .. . ......... . .. . .... . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... .. . ..... . .. . ....... . .. .. ..... . ........... ...... . ... . . . . . .... . ..... . .. . ............................... .. . . . .. . . . . . . . ............ . . . . . . .......... .. . . . . . ..... . . .... . . ......... . . . ..... .. .......... . . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 22222222 222 11111 11 888888888888888888888888888888888 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 4444 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 77 7 99999 7 99 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 0 00000 2 88 5 4444444444444444444444444444444 22 7 7 7 88 7 7 0 7 7 7 0 888888888888 0 7 4 7 6 0 4444444444 00 0 8 0 0 5 33333 7 7 1111 7 7 777777777 8 0 7 77777 88 9999999999 3 3 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--C-------ACA------TACT-TTTGT--AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAG-AGACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--C-------AC-------TACT-TTT-T--AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAAGACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTAG-----AAACG-AAAA-----A--AAT--A-------------ATTTCTTCACTC-----GTTA-ATATG-CGTACAGTCTGTT---------CAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-AT----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAG-TTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAA-GCAT
gi|1 : gtgAAGCATTCAAC-------ACATGCT--TACTGTTTGT--AAAAAA--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAAC-TTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTTATTGTGTGTATCGAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaGATAT-TATGCTA--TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT----------GACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT--A-----GAA-G-AAAA-----A--GAT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT--G-----GAA-G-AAAT-----G--AAT--A-------------ATTCTCATTCTCTTTT-ATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-tactttccattcgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT--A-----GAA-G--AAA-----A--AAT--A-------------ATT--------------
gi|13 : GATATTTATGCTA-ATAAAAGT-CACTAT----CTCAGT-AC-ATtctactcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--G-------------ATT--------------ATAA-ATGTGTCGTGCAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACCA--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCCGACA--TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGC---AAAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCATTT--C-------AC--------AC---------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-ACTTCATTCT----------ATGTATCGAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTA-ATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGAAAAGAAAAATACACA-TAAAGTCATT-GTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAA-----A--AAT--AGTTTTCATTCGTTATT--------------ATAG-AGGTGCCGTACGTTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-AT----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAG-TTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAA-GTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTATTT--CACACATGAC-------TACT-TTTGT--AATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTT-CCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatT--A-------------TTC--------------ATGA-CGGTGTC--ACAGTCAATT---------CA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-ATAA--TGA
gi|4 : aactgaaaaaaaaatcccattcgt--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTT-GGAAG-TTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCATTT--C-------ACACATGCTTACT-TTTCT--AAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAAC-TTTCCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA-A-AAAA-----A--AATCCATTTT---------ATT--------------ATAATGGGTGTCA-AC-GTCCATT---------CA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-AT-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAG-CTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGACCTTTA------CCTCTA----ATTTT--AAGCAGTT--A-------ACATGT---TACT-TTT-TCTAAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AAC-TT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT--A-----GAA-GGAAAA-----A--AAT--A-------------ATTTTTCATTCGTTATTATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-AT-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAA-GTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCATAT--C-------AC-------ccaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGCATCGAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG--------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAAacatgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCACAT--A-------TT-------TACT-TTTGT--GAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAAC-T--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-AGTTCATTATT-------------ATCAAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATG-TATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT--TTTTTTGAA-T-AGAATTTCCATTCGT--T-------------ATT--------------ATAA-AGGTGT--TACAGTCAGTT---------CA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAAT-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TT-CAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-AGTTCATTATTGT-------ATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTA-ATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAGAGAGAGAG-AGAGACG-TTAGGTCATT-GTGATATTTTACTG---ATA------TATATTGTGTAGATATa
Alignments
lowQualScore : 3333333333333333333 22222222 11111 888888888888888888888888888888888 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 2222 22222 5555555555 11111 11 1111 222222222222 222222222 11 11111 1111 222222222 11111 2222222222222 1 1 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 00000000 666 11111 66 000000000000000000000000000000000 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 5 0000 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 33 5 88888 0 77 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 5555 55555 3 88 2 1 77 0000000000 66666 99 99 6 6 6 00 6 6666 5 5 5 5 222222222222 5 5 1 1 0 8 0 666666666 11 8 0 8 8 7 44444 0 6 2222 5 5 666666666 9 1 6 66666 55 0000000000000 3 3 777777777777 0
lowQualScore : ... . .... . ................... . ........ ... ..... .. ................................. . . .. . ......... . .. . .... . . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... .. . ..... . .. . ....... . .. .. ..... . ........... ...... . ... . . . . . .... ..... . .. . . .. .......... ..... .. .. . . . .. . .... . . . . ............ . . . . . . . ......... .. . . . . . ..... . . .... . . ......... . . . ..... .. ............. . . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 22222222 222 11111 11 888888888888888888888888888888888 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 7 7777 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 77 7 99999 7 99 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 00000 2 88 5 4 99 9999999999 77777 22 22 7 7 7 88 7 8888 7 7 7 0 888888888888 0 7 4 7 6 0 8 888888888 00 0 8 0 0 5 33333 7 7 1111 7 7 777777777 8 0 7 77777 88 7777777777777 3 3 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-T-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACA------T---ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-T-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACA------T---ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTAG-----AAACG-AAAA-----A--AAT--A-------------ATTTCTTCACTC-----GTTA-ATATG-CGTACAGTCTGTT---------CAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-A-T----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAG-TTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAAGCAT
gi|1 : gtgAAGCATTCAACACA------T---GCTTACTGTTTG-TAAAAAA--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAAC-TTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTTATTGTGTGTATCGAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaGATAT-TATGCTA--TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT---------G--ACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT--A-----GAA-G-AAAA-----A--GAT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT--G-----GAA-G-AAAT-----G--AAT--A-------------ATTCTCATTCTCTTTT-ATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-tactttccattcgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT--A-----GAA-G--AAA-----A--AAT--A-------------ATT--------------
gi|13 : GATATTTATGCTA-ATAAAAGT-CACTAT----CTCAGT-AC-ATtctactcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--G-------------ATT--------------ATAA-ATGTGTCGTGCAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACC-A--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCC-GACA-TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGCA--AAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCATTT--CACA-----------------------CAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-ACTTC---ATTCT-------ATGTATCGAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTA-ATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGA-AAAGAAAAATACACA-TAAAGTCATT-GTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAA-----A--AAT--AGTTTTCATTCGTTATT--------------ATAG-AGGTGCCGTACGTTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-A-T----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAG-TTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAAGTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTATTT--CACACATGACT---ACTT-----TTG-TAATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTT-CCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatT--A-------------TTC--------------ATGA-CGGTGTC--ACAGTCAATT---------CA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-A-TAA--TGA
gi|4 : aactgaaaaaaaaatcccattcgt--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTT-GGAAG-TTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCATTT--CACACATGCTT---ACTT-----TTC-TAAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAACTTT-CCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA-A-AAAA-----A--AATCCATTTT---------ATT--------------ATAATGGGTGTCA-AC-GTCCATT---------CA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-A-T-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAG-CTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGACCTTTA------CCTCTA----ATTTT--AAGCAGTT--AACA------TGTTACTT-----TTTCTAAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AAC-TT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT--A-----GAA-GGAAAA-----A--AAT--A-------------ATTTTTCATTCGTTATTATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-A-T-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAAGTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCATAT--CACA------C---Accaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGCATCGAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG--------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAAtgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCA-----CATA------TTT-ACTT-----TTG-TGAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAAC-T--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-AGTTCATTATT-------------ATCAAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATG-TATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT--TTTTTTGAA-T-AGAATTTCCATTCGT--T-------------ATT--------------ATAA-AGGTGT--TACAGTCAGTT---------CA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAA-T-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TT-CAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-AGTTCATTATTGT-------ATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTA-ATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAGAGAGAGAGAG--AGACG-TTAGGTCATT-GTGATATTTTACTG---ATA------TATATTGTGTAGATATa
Alignments
lowQualScore : 3333333333333333333 22222222 11111 888888888888888888888888888888888 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 2222 22222 5555555555 11111 11 1111 222222222222 222222222 11 11111 1111 222222222 11111 2222222222222 1 1 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 00000000 666 11111 66 000000000000000000000000000000000 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 5 0000 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 33 5 88888 0 77 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 5555 55555 3 88 2 1 77 0000000000 66666 99 99 6 6 6 00 6 6666 5 5 5 5 222222222222 5 5 1 1 0 8 0 666666666 11 8 0 8 8 7 44444 0 6 2222 5 5 666666666 9 1 6 66666 55 0000000000000 3 3 777777777777 0
lowQualScore : ... . .... . ................... . ........ ... ..... .. ................................. . . .. . ......... . .. . .... . . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... .. . ..... . .. . ....... . .. .. ..... . ........... ...... . ... . . . . . .... ..... . .. . . .. .......... ..... .. .. . . . .. . .... . . . . ............ . . . . . . . ......... .. . . . . . ..... . . .... . . ......... . . . ..... .. ............. . . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 22222222 222 11111 11 888888888888888888888888888888888 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 7 7777 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 77 7 99999 7 99 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 00000 2 88 5 4 99 9999999999 77777 22 22 7 7 7 88 7 8888 7 7 7 0 888888888888 0 7 4 7 6 0 8 888888888 00 0 8 0 0 5 33333 7 7 1111 7 7 777777777 8 0 7 77777 88 7777777777777 3 3 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-T-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACA------T---ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-T-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACA------T---ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTAG-----AAACG-AAAA-----A--AAT--A-------------ATTTCTTCACTC-----GTTA-ATATG-CGTACAGTCTGTT---------CAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-A-T----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAG-TTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAAGCAT
gi|1 : gtgAAGCATTCAACACA------T---GCTTACTGTTTG-TAAAAAA--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAAC-TTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTTATTGTGTGTATCGAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaGATAT-TATGCTA--TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT---------G--ACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT--A-----GAA-G-AAAA-----A--GAT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT--G-----GAA-G-AAAT-----G--AAT--A-------------ATTCTCATTCTCTTTT-ATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-tactttccattcgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT--A-----GAA-G--AAA-----A--AAT--A-------------ATT--------------
gi|13 : GATATTTATGCTA-ATAAAAGT-CACTAT----CTCAGT-AC-ATtctactcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--G-------------ATT--------------ATAA-ATGTGTCGTGCAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACC-A--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCC-GACA-TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGCA--AAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCATTT--CACA-----------------------CAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-ACTTC---ATTCT-------ATGTATCGAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTA-ATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGA-AAAGAAAAATACACA-TAAAGTCATT-GTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAA-----A--AAT--AGTTTTCATTCGTTATT--------------ATAG-AGGTGCCGTACGTTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-A-T----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAG-TTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAAGTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTATTT--CACACATGACT---ACTT-----TTG-TAATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTT-CCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatT--A-------------TTC--------------ATGA-CGGTGTC--ACAGTCAATT---------CA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-A-TAA--TGA
gi|4 : aactgaaaaaaaaatcccattcgt--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTT-GGAAG-TTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCATTT--CACACATGCTT---ACTT-----TTC-TAAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAACTTT-CCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA-A-AAAA-----A--AATCCATTTT---------ATT--------------ATAATGGGTGTCA-AC-GTCCATT---------CA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-A-T-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAG-CTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGACCTTTA------CCTCTA----ATTTT--AAGCAGTT--AACA------TGTTACTT-----TTTCTAAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AAC-TT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT--A-----GAA-GGAAAA-----A--AAT--A-------------ATTTTTCATTCGTTATTATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-A-T-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAAGTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCATAT--CACA------C---Accaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGCATCGAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG--------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAAtgcttagacactcgacaagtttatctttgcaatcttgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCA-----CATA------TTT-ACTT-----TTG-TGAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAAC-T--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-AGTTCATTATT-------------ATCAAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATG-TATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT--TTTTTTGAA-T-AGAATTTCCATTCGT--T-------------ATT--------------ATAA-AGGTGT--TACAGTCAGTT---------CA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAA-T-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TT-CAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-AGTTCATTATTGT-------ATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTA-ATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAGAGAGAGAGAG--AGACG-TTAGGTCATT-GTGATATTTTACTG---ATA------TATATTGTGTAGATATa
blockSeqs : TTG . CCCC C CCCCCCTCTCCTAAAAAGA T TTTTTT GG TTTCC TT AATTTTTCATTCGTTATT T GT AACTGACTT . GT . TGTG . G C T C A C GGT . A T . . TCTGAC A A C TG A T A A . TC . T AT T T A . TTA CC T CG . A GG A . TT TTGTT . ACATG TGTACA G GAA A C . G C AA TATAA A TT C T . CATGACT . TC GC . . G TA . TTA C . C T ACAGT A T T G . CT AT . . . T CTAA . . T . C C G . TACGT CA GAAAAGAAAAAT . . ATAATATACCGG
blockSeqs : CTG . . C A . A G . . AATTCTCATTCTCTTTT . GT . . . . ATTG . . . T . . . AA . . . . . . A . . . . . . . . A . . . . . T . A CC . CG . A GG A . TT CTGTT . A . A . A . . . C A . C TC C T . CATGCTT . G . . . G T . TTT . . . . AGT . . T A . GT . . . . T TTAA . . . . C T G . . CA GAGAGAGAGAG . . ATA
blockSeqs : CTA . . A C . G G . . AGTTTTCATTCGTTATT . GT . . . . . . . . G . . . A . . . . . . C . . . . . . . . A . . . . . A . A GA . TT . A AA A . TT TTGTT . A . A . A . . . C . . A TT C T . TGTT . C . . . G T . TTT . . . . AGT . . T A . GT . . . . A TATG . . . . C T A . . A
blockSeqs : CTA . . C A . A G . . CCATTTTATT . GT . . . . . . . . G . . . A . . . . . . C . . . . . . . . T . . . . . A . A CC . CG . A GG A . TT TTG . A . A . A . . . G A . . G . TTT . G . . . G C . TT . . . . AGT . . T G . . . . . . G TTAA . . . . A T G . . C
blockSeqs : CTA . . C A . G G . . AATT . A . . . . . . . . G . . . A . . . . . . C . . . . . . . . T . . . . . A . A T . TG . . A . . T TG . A . . . . . . . . . . T . C . . . . . . . . T . . . . AGT . . G G G . . . . . . . . . .
blockSeqs : TTA . . C C . A A . . GATT . T . . . . . . . . G . . . . . . . . . . . . . . . . . . . . . . . . C . C . . . . . . T . A . . . . . . . . . . . . . . . . . . . . . .
blockSeqs : G . . C . . . T . . ATTC . . . . . . . . . . . . . . .
blockSeqs : . . . . . . TATT
blockSeqs : . .
blockSeqCons : CTA A******* G** ACATTCTATT*********************** A*** ** *** *** A*** CG*** ** GG***** ** TTGTT A********** ** CTGTT***** ***** AGT********* GT******* TTAA* **** C******** CA
originalCons : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT--G-----GAA-G-AAAA-----A--AAT--A-------------ATT--------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-T-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACA------T---ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGCTA-ATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
finalCons : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TTA-------GAAG--AAAA-----A--AATACATTCTATT-----------------------ATAA-AGGTGTCGTACAGTCAGTT---------CA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-A-TA---TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TTA---TTCCGGAAG-TTTTTCG---CCA--ATACTTGG-----ATAT--TGATTTGTTGTTGAGTTTCTA-CTTCA----------TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAAGTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTT--CACACTGTT-----ACTT-----TTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACAAGT---------TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGTTAA-TAAACGT-CATTAT----GTCAGT-AT-ATCC--------TATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Alignments
lowQualScore : 3333333333333333333 1111111 3333333333333333 11 222222222 2222 2222 111 111111 111 1111 1111111 11111 11111111111 111111 111 1111 1 22222 444444444 11 11 1111 222222222222 3333333333 11 1111 222222222 11111 2222222222222 1 1 444444444444
lowQualScore : 444 5 8888 2 3333333333333333333 5 6666666 7777 4 6666666666666666 33 5 0 11 0 000000000 5 66 5 1111 5 0 5 5 1 5 5 6666 77 5 5 000 5 999999 1 6 6 77 5 5 5 5 5 88 5 5 77 5 5 8 0 000 1111 33 5 8888888888 1 9999999 1 77 33 11111 5 99999999999 666666 3 000 1 5 5 5 5 7777 0 55555 3 88 2 1 555555555 5 22 77 5 6 6 00 6 6666 5 5 5 5 222222222222 5 5 1 1 0 8 2222222222 11 8 0 8 8 7 8888 0 6 2222 5 5 666666666 9 1 6 66666 55 0000000000000 3 3 777777777777 0
lowQualScore : ... . .... . ................... . ....... .... . ................ .. . . .. . ......... . .. . .... . . . . . . . .... .. . . ... . ...... . . . .. . . . . . .. . . .. . . . . ... .... .. . .......... . ....... . .. .. ..... . ........... ...... . ... . . . . . .... . ..... . .. . . ......... . .. .. . . . .. . .... . . . . ............ . . . . . . .......... .. . . . . . .... . . .... . . ......... . . . ..... .. ............. . . ............ .
lowQualScore : 222 0 5555 5 8888888888888888888 0 0000000 7777 0 0000000000000000 55 0 9 55 2 000000000 0 99 0 2222 0 2 0 0 4 0 7 4444 99 7 7 000 7 222222 0 7 7 99 7 7 7 7 7 77 7 7 99 7 7 7 1 000 6666 77 7 9999999999 4 0000000 4 99 11 99999 7 66666666666 444444 6 000 4 7 7 7 0 2222 0 00000 2 88 5 4 333333333 7 11 99 7 7 7 88 7 8888 7 7 7 0 888888888888 0 7 4 7 6 0 4444444444 00 0 8 0 0 5 5555 7 7 1111 7 7 777777777 8 0 7 77777 88 7777777777777 3 3 333333333333 7
consensus : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT-A-----GAA--G-AAAAAAA-TA------CATTCGTT--ATT--ATAA-AGGTGTCGTACAGTCAG---------TTCA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTTCACACATG-TT---ACT-TTTG-TAAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGTTAATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
Reference ( family-207 ) : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT-A-----GAA--G-AAAAAAA-TA------CATTC--T--ATT--ATAA-AGGTGTCGTACAGTCAG---------TTCA-CG--TTAAAT-AC----A-GTCA-GATG-CGATGAT-AT-AT-A--TGATATCTATG--T-ATA-G---T-ATAAG------TCC-GAGTA-ATAAAAACAATATA--C-GGTTC-ATG-CATAA-CA-ATA-NTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CCA--ATACTTG-----GATAT--TGATTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---AAAAAA-GTATGAT-----TATTTTGTTACCGAACCTTCAACTCAACTTCTATTATATTTTCTAAGCATTTCACAC-TG-TT---ACT-TTTG-TAAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TT-CCATTTGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGTATCGAAGAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-AATACACGATATNTATGTTAATAAACGT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAAGAGAAAGAGAG--ACACG-TTAAGTCATT-GTGATATTTTACTGAT-ATA------TATATTGTGCGGATAT
gi|1 : GCGTAGG---CATTGACGCCAAA-CGCTTCGGGTGT-CACATCAATTT-A----CCCCC------------------CAAAAATTAA-TTTA-----GAAACG-AAAAAAA-TA------ATTTC--TTCACTC-GTTA-ATATG-CGTACAGTCTG---------TTCAACG--TTAAATTGC----ATGTAT-GATG-CAATGAT-AT-AT----TGATATCTATGACT-ATG-GACTTGATA-G------TTC-GAGTA-ATGAAAACAATGTA--C-GGT-C-ATG-CATAA-AATATA-TTTAT-ATT--GG--A-AT-TCTTGACTCTTTT--AGTTCCGGGAG-TTTTTTACGTCCAGTATACTTGCATGGGATATATTGAATTG--GTTGAAGTTCTATCTTCCTGTAAA----TACA------TTCTAATAT---AAAGTTT-CCGGTTTACGCA-CAAAATTGT-CAGCGAAAAAAAA-GCAT
gi|1 : gtgAAGCATTCAACACATGCTT---ACTGTTTG-TAAAAAA--TTCTTGAAGAGTAAAGACAGACCA-ACAAAACTTATTTTC-ACTATTCTGAAC-TTGCCATTTGAAATTGTA-CACATCA-CAGACA---CTCGACA--AGAGTTACTATTATCT-TTGCA-ATCGTGCTTTTAGGCCTACGGGTATTTTATTATTGTTTATTGTGTGTATCGAAGAAATAAACAAAT--TCCCGTAATTG-TATATCAAAATCAGAGTACAtcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|1 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaGATAT-TATGCTA-TAAAAGTTCAGTACTGCAGTCTGT-ATTATCTCCTAGACCTATCC--AAGGGAACTG----GCTTTGGTGAA-----TCTCTGG-AAAAAT---------G--ACATGGTTAAGTCATTTGTGATATTTTACTGAT--TA------TATATTGTACGGATATgcattacattgaacattgaacaggttttcttagaactattgatattatgctataaaagttcagtactgcagtctgtattatctcctagacctatccaagggaactggctttggtgaatctctggaaaaatgacatggttaagtcatttgtgatattttactgattatatattgtacggatattga
gi|10 : gtggcgtaggcattgacgccaaacgcttcgggtgtcacatcaatttaccccccaaaaattaatttagaaacgaaaaaaataatttcttcactcgttaatatgcgtacagtctgttcaacgttaaattgcatgtatgatgcaatgatatattgatatctatgactatggacttgatagttcgagtaatgaaaacaatgtacggtcatgcataaaatatatttatattggaattcttgactcttttagttccgggagttttttacgtccagtatacttgcatgggatatattgaattggttgaagttctatcttcctgtaaatacattctaatataaagtttccggtttacgcacaaaattgtcagcgaaaaaaaagcattcaacacatgcttactgtttgtaaaaaattcttgaagagtaaagacagaccaacaaaacttattttcactattctgaacttgccatttgaaattgtacacatcacagacactcgacaagagttactattatctttgcaatcgtgcttttaggcctacgggtattttattattgtttattgtgtgtatcgaagaaataaacaaattcccgtaattgtatatcaaaatcagagtacagcattacattgaacattgaacaggttttcttagaactattGCGTAGTTGATATAGACGCCAAAACGCC-CTCGCGAACACATGAATTTGA----CCCCCCCCCCCTCTCCTAAAAAGAAAAAA-CAG-TT-A-----GAA--G-AAAAAGATTA------CTTTC--C--ATT--tga
gi|11 : agtgCAATTTGA----CA---------------------AAAAAATTAA-TT-G-----GAA--G-AAATGAA-TAATTCT-CATTC--T--CTTTTATAA-GGGTGCCGTGTAGTCAGTTAACTGACTTCA-CG--TTAAAT-AC----A-TTCA-AATA-CTGTGAT-cgttatcaatgaggtg
gi|12 : GCGTAGG---CATTGACGCCAAAACGCT-CGGATGTACACATCAATTTTACCCCCCCCC------------------CCAAAATTAATTT-A-----GAA--G--AAAAAA-TA------ATTTC--T--ACT--
gi|13 : GATATTTATGCTAATAAAAGT-CACTAT----CTCAGT-AC-ATcgtt
gi|14 : tcaaaatcagatacacattacatgtaacagtgacaggttttcttagaactCGTAGCTGCCATTGACTCCAAAATGCC-CGGGTGTACAGATCAATTTGA----CCACC------------------ACAAAAgta
gi|15 : tcGCGTAGCTACCATTGATGCCAAAACGCC-CGGGCGTACACATCAGTTTGA----CCCCC------------------aa
gi|16 : gtgT----GTCAGTTAT-ATC---------TATCC-AAACGGAATTGAATTGCTTTG-TGAA-----TCTCTGGCAAAAGAAGAAAcccccc
gi|2 : GCGTAGCTACCATTGACGCCAAAACGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------AAAAAATTAA-TT-G-----GAA--G-AAAAAAA-TG----------------ATT--ATAA-ATGTGTCGTGCAGTCAG---------TTCA-CG--TTAAAT-AC----A-GTCA-GATG-CTATGATCAT-ACCA--TGATATCTATG--T-ATA-A---T-AAAAG------TAC-GAGTACATAAAAACAATATA--C-AGTTC-ATG-CACAA-CA-ATA-ATT-T-ATT--GG-TA-ATATTTTGACT---TT--A-TTCCGACA--TTTTT--CG-CCA--ATACTTG-----GATAT--TGTTTTGTTGTTGAGTTTCTA-CTTC------A----TACA------TTCTGATAT---AAAGTTT-CCGG-TTTCGCA-CAAATATGTCCAGC---AAAAAAAGTACGGT-----TATTTTGTAACCGAACCTTCAACTCAACTTCTATTATATTGTCTAATCATTTCACAC-------------------AAGATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTT-A-TATTCTGAAC-TTACCAATCGAAATTGTA-CAC-TCA-CAGAGA-GACTCGACA--AG------T-TTACCT-TTGCA-ATCGTGCTTTTAGGCATACGGA-ACTTCATTCT----------ATGTATCGAAGAAATAAACTAAT--T-CCGTTACTGTTAT-CCAAAATCA-GATACACGATATTTATGTTAATAAACAT-CATTTT----GTCAGT-AT-ATC--------CTACCCCAATCGGAATTGAATAGCTTTC-TGAA-----TCTCTGGCAAAAAGA-AAAGAAAAATACACA-TAAAGTCATT-GTGATATTTTACTGATAATATACCGGTATATTGTGTGGATAT
gi|3 : GCGTAGCTACCATTGACGCCAAAACGCA-CGGGCGTACACATCAATTTGA----CC----------------------AAAAAC---------------------AAAAAA-TAGTTTT-CATTCGTT--ATT--ATAG-AGGTGCCGTACGTTCAG---------TTCA-CG--TTAAAT-AC----A-GTCA-GATA-TGCTGCG-AT-AT----CAATATATATG--T-ATA-G---T-A
gi|3 : gtgATATCTATG--T-ATA-G---T-ATAAG------TAC-GAGTA-ATAAAAACAATGTA--C-AGTTC-ATG-CATAA-CA-ATA-ATT-T-ATT--GG-TA-ATTGTTCGACT---TTTTA-TTCCGGAAG-TTTTT--C------------TG-----GATAT--TGATTTGT-G--GGGTTTCTA-CTTC------A----TACA------TTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAACATGTCCAAC---AAAAAA-GTATGAT-----TATTTTGTTACCAAACCCTCAACTCAACTTCTATTATATTTTCTAGGTATTTCACACATGACT---ACT-TTTG-TAATATT--TTCTTTAAAA-TAAAGA-AGACCAGACAAACCTTATTTTTAA-AATTCTGCACTTT-CCATTTGAAATTGTA-CAT-TCA-CAGAGA-GACTCGACA--AG------T-TTATCT-TTccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaatatatctatgtatagtataagtacgagtaataaaaacaatgtacagttcatgcataacaataatttattggtaattgttcgactttttattccggaagtttttctggatattgatttgtggggtttctacttcatacattctaatataaagtttccggttacgcacaaacatgtccaacaaaaaagtatgattattttgttaccaaaccctcaactcaacttctattatattttctaggtatttcacacatgactacttttgtaatattttctttaaaataaagaagaccagacaaaccttatttttaaaattctgcactttccatttgaaattgtacattcacagagagactcgacaagtttatcttt
gi|4 : gtggcgtagctaccattgacgccaaaacgcacgggcgtacacatcaatttgaccaaaaacaaaaaatagttttcattcgttattatagaggtgccgtacgttcagttcacgttaaatacagtcagatatgctgcgatatcaatatatatgtatagtaccccacaatttatgtatttatttttctttgtttattcatgtattgtagtgggtggaaaaaaaaatattggaaaaaaat-----GAA--A-AAAAAAT-CC------CATTCGTT--ATTC-ATGA-CGGTGTC--ACAGTCAA---------TTCA-CG--TTAA-C-ACTGTGA-GTTA-GATG-CGATGAT-AC-ATAA--TGA
gi|4 : aact--T-ATATG---T-GCAAG------TCCAGAGTA-ATAAAAATGATATATGC-GGTTC-ATGACATAAACA-ATA-TTT-TTATT--GG-TA-ATATCTTGACT---TT--A-TTT-GGAAG-TTTTT--CG-CCC--ATATTTA--------------ATTTGTTG---AGTTTCTA-CTTC------A----TACATGTACATTCTAATAT---AAAGTTT-CCGG-TTACGCA-CAAATATGTCCAGC---nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|4 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCCGGACCTTTACCTCAACTTTTA------------AGCATTTCACACATGCTT---ACT-TTTC-TAAGATT--TTCTTTGAAA-TAAAGA-AGACCAGACAAACCTTATTTCT-A-TATTCTGAACTTT-CCATTTGAAATTGTA-CAC-TCA-CAGAGT-GAAGCGACA--AG------T-TTATCT-TTGCA-ATCGTGCTTTTAGACcacccccccccccccccccccctaaaaaccaaccaaataaaaacatccggacctttacctcaacttttaagcatttcacacatgcttacttttctaagattttctttgaaataaagaagaccagacaaaccttatttctatattctgaactttccatttgaaattgtacactcacagagtgaagcgacaagtttatctttgcaatcgtgcttttagacca
gi|5 : aactgaaaaaaaaatcccattcgttattcatgacggtgtcacagtcaattcacgttaacactgtgagttagatgcgatgatacataatgannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntatatgtgcaagtccagagtaataaaaatgatatatgcggttcatgacataaacaatatttttattggtaatatcttgactttatttggaagtttttcgcccatatttaatttgttgagtttctacttcatacatgtacattctaatataaagtttccggttacgcacaaatatgtccagccacccccccccccccccccccctaaaaaccaaccaaataaaaacat-----GAA--A-AAAAAAA-TC------CATTT--T--ATT--ATAATGGGTGTCA-AC-GTCCA---------TTCA-CGGTTTAAAT-ACATTGA-GTTAGGATGCCGATTGT-AC-AT-A--AGATca
gi|5 : aaactAATATA--GAGGTTCTATG-CATAA-CA-AT----T-T-ATTATGG-TA-CT-TCT-GATT---TT----TTGAGAAAG-CTTTA--TT-CAA--GT-CTT---------AT--TAATTTGT----GAGTTTCTA-CTTT------ACATGTACA------TTCT-ATATGAAAAAGTTTCCCGG-T--CGCAGCAAATAtcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|5 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnCGGACCTTTA------CCTCTA----ATTTT--AAGCAGTTAACA--TG-TT---ACT-TTTTCTAAGATTGCTTTTTTGAAA-TAA-GA-AGAACG---AAAACTTATTGT--A-T-TTCT-AAC-TT-CCATTTGAAATTGTACCAT-CCACCAGAGATGAAGCGACAACAG------T-TTATCTATTGCATATCGTG--TTTAGACaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattcggacctttacctctaattttaagcagttaacatgttactttttctaagattgcttttttgaaataagaagaacgaaaacttattgtatttctaacttccatttgaaattgtaccatccaccagagatgaagcgacaacagtttatctattgcatatcgtgtttagacccaagg
gi|6 : aaactgaaaaaaaaaatccattttattataatgggtgtcaacgtccattcacggtttaaatacattgagttaggatgccgattgtacataagattcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaatatagaggttctatgcataacaatttattatggtacttctgattttttgagaaagctttattcaagtcttattaatttgtgagtttctactttacatgtacattctatatgaaaaagtttcccggtcgcagcaaataaatgtttttcccgcaccccccaccccccccctaaaccaaccataaaacattGCATAGTTACCATTGACACCAAAATGCC-CGGGCGTACACATCAATTTGA----CCCCC------------------CAAAAATTAA-TT-A-----GAA--GGAAAAAAA-TAATTTTTCATTCGTT--ATT--ATAA-AGGTGTTGTGCAG--------------------------AT-AT----A-------------ATGAT-AT-AT-A--TA-----TATG--T-ACA-G---T-ATAAG------TCC-GAGTT-ATAAAAATAATATA--C-GGTTC-ATG-CATAA-CA-ATA-TTT-T-ATT--GG-TA-ATATCTTGACT---TT--A-TTCCGGAAG-TTTTT--CG-CAA--ATACTTA-----AAT-T--TGAT---CTGTTGAGTTTCTA-CTTA------A----TACA------TTCTAATAT------TTTT-CCGG-TTACGTA-CAAATATGTGCAGC----AAAAA-GTATGATTATAATATTTTGTTACCGAACCTTCAACTCAACTTCTATCATATTTTCTGAGCATATCACACATG-CTTAGACA-CTCGACAAGTTT--ATCTTTGCAA-Tccaagg
gi|6 : AGA-CACTCGACA--AG------T-TTATCT-TTGCA-ATCTTGCTTTTAGGCATACGGG-AGTTCATTATTGT-------ATGCATCGAAAAAATAAACAAAT--T-CCGTTACTGTTAT-TCAAAATCA-TATCCACCACATATATG-------GCAT-CATCAT----GCCAGT-AT-ATC--------CTATCCTGGGCG-----GAATTGCTTTG-TGAATACGTTCTTTG--AAAAActtgcttttaggcatacgggagttcattattgtatgcatcgaaaaaataaacaaattccgttactgttattcaaaatcatatccaccacatatatggcatcatcatgccagtatatcctatcctgggcggaattgctttgtgaatacgttctttgaaaaa
gi|7 : gcatagttaccattgacaccaaaatgcccgggcgtacacatcaatttgaccccccaaaaattaattagaaggaaaaaaataatttttcattcgttattataaaggtgttgtgcagatataatgatatatatatatgtacagtataagtccgagttataaaaataatatacggttcatgcataacaatattttattggtaatatcttgactttattccggaagtttttcgcaaatacttaaatttgatctgttgagtttctacttaatacattctaatatttttccggttacgtacaaatatgtgcagcaaaaagtatgattataatattttgttaccgaaccttcaactcaacttctatcatattttctgagcatatcacacatgcttTATGAT-----TATTTTGTTACCGAACCTTCAACTCTACTTCTATTATATTTTCTAAGCA---CATAT-T---T---ACT-TTTG-TGAGATT--TTCTTTAAAA-TAGAGA-AGACCAGACGAACCTTATTTTC-A-TATTCTGAAC-T--------------GTA-CAC-TCA-CAGAGA-GACTCGACA--------------------TGCA-A--GTGCTTTTAGGCATACGGG-AGTTCATTATT-------------ATCAAAGAAATAAACAAAT--T-CCGTTACTGTTTT-TCAAAATCA-AATACACGATATGTATGTATGTATACAT-CATTAT----GTCAGT-AT-ATC--------CTATCCTAAACGAAATTGAATTGCTTTG-TGGA-----TCTCTGG
gi|8 : GGCGTACACATCAATTTGA----CCC----------------------AGAATTTT-TT-TTTTTTGAA--T-AGAATT--TC------CATTCGTT--ATT--ATAA-AGGTGT--TACAGTCAG---------TTCA-CA--TTAAAT-AC----A-GTCA-GATG-CGATGCT-AGAAT-GGTTGGTATCTATG--TAAAA-G---T-ATAAGTCTGACTCT-GAGTA-ATAAAAACAATACA--C-AGTTC-ATG-TTTAA-AA-ATATCTT-T-ATT--GGTTATATATCTTTACT---TT--A-TT-CAGAAGTTTTTT--TG-CCA--ATACTTG-----GATAT--TGA----TTGTTGAGTTTCTA-CTTC------A-------A------TC---ATAC---A---TTT-CTGG-TTACGCA-TAAATATAT
gi|9 : ccTA-CAT-TCA-CAGAGA-GACTCGACA--------------------TGCA-AGTG-GCTTTTAG----ATGGG-AGTTCATTATTGT-------ATCTGTCGAAGAAATAAACAAATATT-CCGTTACTGTTAT-TCAGAATCA-AATATACGATATGGATGTTAATAAACAT-CATTAT----GTCCGT-AT-ATC--------ATATCCTAAACGGAATTTAATTGCTTTG-TGAA-----TCTCTTGC-AAGAGAGAGAGAGAG--AGACG-TTAGGTCATT-GTGATATTTTACTG---ATA------TATATTGTGTAGATATa