lowQualScore : 111111111 111111111111111111111111111111111
lowQualScore : 2 1 11111 1111 2222222 11 1 1 111 1111 11 1111 11 22 1 1 8888888888888888888888888 1 1 44444 1 1 1 222 111111 1111 333333333333333 1 1 1 1 444444444 11 1 1 222 33333 22222222 1111 000000000 1 1111 222 1 1 1 111111111 22 2222 11 6666666666666666 1 11 222 1 333333 2222 111 1 1 555555555 1 222 44444444 1 44444444 1 1 111 1 11 1 888888888888888888888888888888888 1 111 2 1 222222 1 1
lowQualScore : 0 4 3 6 2 99 1 6 88888 5 0000 3 9999999 5 3 2 888888 5 33 0 0 888 888 3333 88 8888 99 11 1 22 0 77 0 0 6666666666666666666666666 0 1 1 00000 6 6 6 8 222 222222 0000 444444444444444 1 6 6 1 7 3 6 333333333 88 3 3 333 6 33333 66666666 3 3333 111111111 3 8 3333 6 1 333 3 0 5 3 4 0 9 666666666 1 7 22 1111 33 3333333333333333 0 0 33 333 3 666666 7 8888 888 3 0 3 333333333 77 3 3 333 6 88888888 5 88888888 3 3 777 2 0 11 2 0 3 333333333333333333333333333333333 0 4 777 0 9 3 7 2 0 888888 0 5
lowQualScore : . . . . . .. . . ..... . .... . ....... . . . ...... . .. . . ... ... .... .. .... .. .. . .. . .. . . ......................... . . . ..... . . . . ... ...... .... ............... . . . . . . . ......... .. . . ... . ..... ........ . .... ......... . . .... . . ... . . . . . . . ......... . . .. .... .. ................ . . .. ... . ...... . .... ... . . . ......... .. . . ... . ........ . ........ . . ... . . .. . . . ................................. . . ... . . . . . . ...... . .
lowQualScore : 0 0 8 7 2 22 7 7 88888 7 6666 2 0000000 0 1 5 222222 0 88 0 0 888 555 3333 33 5555 22 00 4 00 6 22 0 6 0000000000000000000000000 6 8 4 00000 0 0 0 0 222 666666 0000 000000000000000 4 0 0 8 3 3 7 333333333 33 3 3 333 7 33333 77777777 7 7777 333333333 3 3 7777 7 0 333 3 7 3 2 2 0 0 000000000 0 8 00 2222 88 5555555555555555 0 8 00 333 3 333333 3 3333 333 3 7 3 333333333 33 7 3 333 7 33333333 3 33333333 3 3 555 5 0 00 5 0 2 555555555555555555555555555555555 5 0 555 2 0 2 5 5 0 888888 0 0
consensus : AGAGATGCATNCAAGAAGGTACGC-GNT--TTTCCAC-ATTTTCN----CGATT-A----CTCGTTCAATGAGCTC------TT-CGCTGC--AT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCT--C--GAAGACGTAGACCTCTCTTAGGTCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCACACTTGCGATACATTTACTCTTGAGAGTGGCTGGCCACGAAACCCATATCTCCACAAGCTGTCAGT-C-GCTTGA--C--CCT-TC-GTTTTTGGG-----T-----GTAGCTCCTTCTCGGCACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACTTGAA-----GCGCCAC--GACG-GTTTCTGTT-TATGCCCT---TGTTGTGATTAGGG-----GTGCATCTGG---GG---AAGNATCTATC-CT---------TGC-AGTTTAA-AT-TCCTTCTCCAGTTCCTCGAT---TATCTGAC-ATTAGTTC-GTGTATCCTTCTCCAATGCC-GCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCTTC----ATGG--GCTTAAATAGC--------T-------TGTTAT-ACCGAAGGTN-CTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATTCGGCTACTG-GGAAGG---------GACCGTGNATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTA-GGAATG--------GCGTATGCGCGT-CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACGTAT--TCCACTCAGTGGTGCCTG-GTTATTTATA-----GAAAAGAANAAAAAAC-----AGAAACAAAAAAAGAAAGAGTAAANTCTT---CCGCTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACAT-GTACTCGCATA------TA-CAGTCATCAACCATAGG
Reference ( gi|2 ) : AGAGAT-TATTCAAGAAGGTACAC-GTT--TTTCCAC-ATTTTCT----TGATT-A----CTCATTCAATGAGCTC------TT-CACTGC--AT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCT--C--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GT-C-G-TTGA--C--CCT-TT-GTTTTTGGG-----T-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACTTGAA-----CCAACAC--GACG-GTTTCTGTT-TATGCCCT---TGTTGTGCTTAGGG-----GTGCATCTGG---GG---AAGGATCTGTC-CT--CTGTCCCTGC-AGTTTTA-AT-TCCTTCTCCAGTTTCTCAAT---TATCTGAC-ATTAGTCCAGTGTATCCCTCTCTAATGCC-GATGTTCACATCGAGTGCTAGACCCGTTCTTTGACTACCTCCACTAATTCCTTC----ATGG--GCTTAAATAGC--------T-------TGTTAT-ACCGAAGGTT-CTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAAGG---------GGGTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG--------GCGTATGCGTGT-CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACGTAT--TTCACTCAGTGGTGCCTG-GTTATTTATA-----AAAAAAAATAAAAAACAAACAAAAAACAAAAAAAGTAAGAGTAAAATCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGTGGGGGCATTTTTGTACAT-GTACTCGCATA------TA-CAGTCATCAACCAGAGG
gi|7 : AGAGAT-TATTCAAGAAGGTACAC-GTT--TTTCCAC-ATTTTCT----TGATT-A----CTCATTCAATGAGCTC------TT-CACTGC--AT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCT--C--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GT-C-G-TTGA--C--CCT-TT-GTTTTTGGG-----T-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACTTGA
gi|6 : ctcgaagggcatatcatccatctcctcctatacttggccacagaactcctcaagttcacttgtcttctcaaactgacttagttgctacagtcatcttcaggctctcttcaccatccacaccctttcctgagcattaccgatagttcttctgaccaggtgaatctccccgtcccctgtaccacactttacactgcattatcattatcgggtgatttcgaaccatcctggaacacagacagcctgaaatttatcctcctccatcggatgatgtagtctgctattactccttttgtgcatcctggattcccgactcggataacctgtttcgcgtttgAGAGATGCATTCAAAAAGGTACAC-GTT--TTTTCAC-ATTTTCC----TGATT-A----CTCATTCAATGAGCTC------TT-CGATGC--AT--TAT-C--AG-TG-ACCG---ATATTAATC--CAGAGAGAG--CTCCGA--TGTT--G-TGCCTCCT--C--GAAGA--TAAACCTCTCTTTGGCCAACGTTGGACATATCGTGGCTCTCCACCCCCAAGGGGCA-A---GCG----------TCT----GTTGGTTGGCCACGAAAT-----TCTCCACAAGCT-TC-GT-C-A-TTGA--C--CCT-TC-GTTTTTGGA-----T-----GT--CTCCTTC-CGG-ACAGTCCATATATATTGAAATGGCCAG-GAGCCTCAC-ACTTGAA-----
gi|5 : gggcatatcatccatctcctcctctacttggtcacaaacctcctcaagttcactgtcttctcaaactgactttattgggtcgtagcctacagttattgtcaggcgtctcatgatccacaccattcctgagcagttaagtccttctgaccaggtgaatcctcccgccgagcagttaagtccttcgaccaggtgaatcctccccgtcccctgtaccaactttgacactgcattatcattatcggggatttcgaacatgctggaacacatgactcatacatggagaaagcctgaaatgatcctcctccagccgatgatacggtctgctattcctccttttgtgcatcctggaaccccgagtcggaacctgtcttcctttgATACAAGAGGGTGTGT-GAT--TGTCC-C-TTTTTAA----CGATG-A----CTTGTCCAATGAGCAT------TT-CTCTGC--CA--TGT-C--AG-TG-TCAA---ATATCAA
gi|10 : tatgggagctgtatacagatcaacgctgtattccatgtttcaattttccaagggaccgatgataaaccctctcatccttgcgttatcgccagcctgcacaagggtgacttgttactttatgggaggcttggggtcgagtttttcataaaccctggtggacaaaacactgatctgagcacccgtgtccgtcattgttcgtagttgcaatccctggatcgccatttctaccagaaatctggtgaccgtgcgtaattgcccgatgggcacggacaggtctctgaggggcccagaagtatgccgacagggcatgtcataccctctcctctacttgtacacaaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccatgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtgcctactgggacctgcccttctatgaacgacgcATACAAGA-GGTGTGT-GAT--TGTCC-C-TTTTTAA----CGATTGA----CTTGTCCAATGAGCAT------TT-CTCTGC--CA--TGT-C--AG-TG-TCAA---ATATCA
gi|3 : cagggcatgtcataccctctcctctacttgtacacacaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccactgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtggctactgggacctgcccttctatgaacgacgcAAAAAGGTACAT-GCT--TTTTCAC-ATTTTCC----TGATT-A----CTCGTTTAATGAGCTA------TT-CACTGC--AT--TGT-C--AG-TG-TCCG---ATATTAATC--TAGAGAGAGAGTTCTGA--TGTC--A-TGCCTCCT--C--GAAGA--TAGACCTTTCTTAGGTCAACGGTGGACATATCGTCGCTCTCCGCCCCCGAGGGGCG-A---GCC----------TCT----GTTGGTTGGCCACGAAAT-----TACCCACAAGCT-TC-GT-C-C-TTGA--C--CAT-TC-GTTTTGGGG-----T-----GT--CTCCTTC-TGG-ACAGTCCCTTTATATCGAAATGATCAG-GAGCCTCGC-ACTTGAA-----GCACCAC--GACG-GTTTCTGTT-TATGCCCT---TGTTGTGATTAGGG-----GTGCATCTGG---GG---AAAGATCTATT-CT---------TGT-AGTTTAA-AT-TCCTTCTCCAGTTCCTCAAT---TATCTGAC-ATTAGTTCCGTGTATCCTTCTCCAATGCC-GCTGTTCACATTGAGTGCTGGACCCATTCCTTCACTACCACCACTACTTCCTTC----ATGG--GCTTAAATAGC--------T-------TGTTAT-ACCGAGGGTG-CTATC---ATTCCA-AGAC-AA--ATCCTTGTGACTAG----GCACGTTTCTG--------CCATT-GCACTATTTGGCTACTG-GGATGG---------GACTGTGAATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCCAGGGAATG--------GCGTATGCACGT-CTGC-TTTACCT---GAAAGGGTCCAAA-AATGACGTAC--TCCACTTAGTGGTGCCTG-GTTATTTAT-------------CCAAAATAC-----AAAAACAGAAAAAGAAGAAGCAAAATCTCATGCTGCTAATCGGGGATGGTCATCACAGCGGAGT-TAGGCATTTGTGTACAT-GTACTCGCATA------TA-CAGACATCAACTA
gi|4 : gtcattctcaagACACCGTTATTTTCCTCTATTTTCTCGGATGAAT-ATGTCCTCATTCAA--AACTCGAAGCATT-CGTTCCATAT--TAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCC--GATGACGTAG-CCTCTATGAGGTCAAACGT-GACATATC-TCACTAT-CG-CCCCGAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCC-GCTTGCCTC--CCTCTC-GTTTCTGTGTTGACT-----GTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCAC-
gi|17 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaTT-A----CACATTCAATATGCTG------TTACATT-C--AT--TATGT--AG-AC-TCCATTAATACTGATTTTCAGAGAGAG--ATCTAA--TATC--ATTACCTCCT--tac
gi|1 : ----CTCATTCAA--AACTCGAAGCATT-CGTTCC--ATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCT--CCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGT-CCGCTTGC--CTCCCT-CTCGTTTCTGTG-----TTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCACTACTTAGATGATGCTCACACTTAACGAGTTTCTGTTATATTCCCTCTCTCCTGAACTTAGCGCGACTGTTCATGTGGAATGGAGCAAGCATTTCCCACTTCCTGTGTTGGCAAGTTTTAGATGTTCTTATCTA---TCCCGGTCCCTTTCTAACTTTTATTTC--TGTA----TCTATAAAGCCAGATGTT
gi|8 : tcATATCGAAATGGTCAA-GAGCCCCAC-ACTTAAA-----GTGCCAT--GGCG-GTTTCTGTT-TATGCCCT---TGTTGTGATAAGGG-----GTGCATCTGG---GG---AAGAATCTATC-CT---------TGC-AGTTTAA-GT-TCTTTCTCCAGTTCCTCAAT---TATCTGAC-ATTAGTCCAGTGTATCCCTTTCTAATGCC-GCTGTTCACATCGAGTGCTGGACTCGTTCTTTGACTACCTCCACTACTTTCTTC----ATGG--GCTTAAATAGC--------T-------TGTTAT-ACCGAAGTTT-CTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GAAAGG---------GGCTGTGGATCAT-TGGTGT---TATTCCCTGGC--------AGAATGCCTATGGAATG--------GCGTATGCGTGT-CTGG-TTCATCT---GAGAGGGTCCAAA-CATGACGTAT--TCCAGTCAGTGGTGCCTG-GTTATTTAT--------------TAAAAAA-----AAGA---AAAAAAAGAAAGAGTAAATTCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACAT-GTACTCGCATA------TA-CAGTCACCAattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttaggactaccccaactactttcgcaaatcgcagaataaatagccatgcgcatactattaccgacagttactttctccattctacagacgagtaattctgtgcctagtgccacacgtttccaccgcaagtccatttatactactcccctcctatggaatgcaccaacccgagcgttcaccatatggagtggttattcctggcccagccagaaaatgcctaggaatgcccgcgtcacgtatgcgttcactggcttcatctctcgagagggtccaaaacgtgacggataattccatcagtgtctctgtgttattttatttttaaaaagaagaaaagaaaagaaaagagtaaaaatctatttttcaaccaatcgataccggtctcacagtgaggcggggcatttttctacattgtactcgcatatagcagg
gi|14 : ATCCTTCTCCAATGCC-GCTGTTCACATCGATTG---------TTCCTTGACCACCATCACTACCTCCTTC----ATGG--ACTTAAATAGCATATTAAGT-------TGTTAT-ACGGGAGGTG-CTAg
gi|1 : GACTACCCCAACTA---CTTTCGCAAATCGCAGAATAAATAGC--------CATGCGCATACTATTACCGACAGTTACTTTCTCCATTCTACAGACGAGTAATTCT-GTGCCTAGTGCCACACGTTTCCACCGCAAGTCCATTTATACTACTCCCCTCCTATGGAATGCACCAACCCGAGCGTTCACCATATGGAGTGGTTATTCC-TGGCCCAGCCAGAAAATGCCTA-GGAATGCCCGCGTCACGTATGCGTTCACTGGCTTCATCTCTCGAGAGGGTCCAAAACGTGACGGATAATTCCATCAGTG-TCTCTGTGTTATTT-TATTTTTAAAAAGAAGAAAAGA--------AAA-GAAAAGAGTAAAAATCTATTTTT---CAACCAATCGATACCGGTC-TCACAGTGAGGCGGGG-CATTTTTCTACATTGTACTCGCATA------TAGCAG
gi|4 : tcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagcctctatgaggtcaaacgtgacatatctcactatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactacttagatgatgctcacacttaacgagtttctgttatattccctctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttagTCT---ATGAGG--TCAAA-CGTGACATAT--CTCACTg
gi|9 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaacaccgttattttcctctattttctcggatgaatatgtcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagccAT--TCCACTCAGTGGTGCCTG-GTTATTTATA-----GAAAAAAA----AAACC--C------CAAAAAAAGAAAGAGTAAAATCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGT-GGGGCATTTTTGTACAT-GTACTCGCATATACATGTA-CAGTCATCAACCATAGGatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactac
6 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|11 ): TCGCAGGTGCAATATCATCTCATTCTCTGCTCTACTTCCACAAACGACTCCTCAAGTTCACTGCTTCTCTCAAAACTTTATTGCGTCGATAGCCTACAGTCATTTCAGGTTCCACATCTTCTTTACACCTGGGCAGTTACCGATAGTCCTCTGACCAGGTAATCCTCCCGTCCCCGTGATCCACTGTACTTTCGATAAAAACATATCGTGGATTCTAACTATGCCGGGACCTACTTATGACTGTTCACAACATGGAGAAAGCTAAATTATCCTCTCATCCTATATGCAGTCTCACTCTCCACTGTGAGCTCCTGG
Unaligned ( gi|12 ): TTAAAGGAACCACATATAGAGTTAACCATTTGCATTCTGTATTTCGTAAGCGTGTTCATACGGGACTGATGATAAAACTATTCCATCTGTTCTCGCCAGCCTTGCACAAGGTCGACATGTTGCTTTGTTGATGACTTTGACGCCAAGGTTCTCATAGAACCCTTTCGGACCAGAACACTGACCATCGGCACTTGTAACCATCAGCTGTTGGCACTGTACTCCTGGATTGCAATTTTTTACCATGAAATTAAACGATCAGTGTAATCCAATCAGCACAAAC
Unaligned ( gi|13 ): GAGTGAAAAATTAATCTAGTTGGCCAGGGTTACATTAACGAACAAAACATATGTAAACATGAAATATCGAACCAACCAACCAGCTGGGTACTAACCCCCCTTTGCGGTTGGAAACATAAAATGGACGTATAGGAATTGCAACCTCCCTATAAAATAGCATGGATGTTAGTGATTATATTGGCCCAAATTTAGATATCGTCCCAAAGTTACAAACTCTCTAAACCTAGAGTAGCCCTATCATAC
Unaligned ( gi|15 ): GTGATTGGGTCCGTGGGGAATGCGGGTCAGAGCAGCTTCTAAGACCAAGTATGCCTTTCTTTCCGCAAAAAGGCGAACAAATGAGGTGGTCCTTGAGA
Unaligned ( gi|16 ): CAACACCTCGAAGGCATATCTTCCATCTCCGCCTTTACTTGGGCCACAAAACTGTCGTCAAGGTGCACTGGTCGCGCAGAACTTGACTGA
Unaligned ( gi|18 ): TGTCGTCTATCTGGACATTCCTTCATCAAATGATCAGGAGAGTCGCATATGAAGCA
Alignments
lowQualScore : 1111111111111111111111111
lowQualScore : 1 222222 11 11 111 11 11 11 33 2222222222222222222222222 44444 2 2222222222 11 1 3333333333 1 2 1 1111 111 11 1 1 4444444 3333 1111 4444444444444444 111 1 22 11 2222 1111 1 1 4444444444 1 111 33333333 3 111 111 111 1 111 1 11 888888888888888888888888888888888 111 222222
lowQualScore : 0 1 1 0 1 8 5 1 5 888 5 9999 0 1 555555 4 2 1 22 4 22 8 8 777 444 8888 55 55 5 88 00 7 4 6 6 0 6 6 2222222222222222222222222 6 6 7 33333 3 8888888888 88 3 5555555555 5 3 5 1 5 4444 000 33 0 0 1 3333333 6 1111 2 0 0 0 1 7777 0 9999999999999999 8 8 1 777 0 55 33 3 1111 0000 0 2 0 2222222222 1 0 777 2 66666666 0 777 777 777 0 777 0 33 8 5 8 8 666666666666666666666666666666666 1 1 444 2 0 8 8 333333 8 3
lowQualScore : . . . . . . . . . ... . .... . . ...... . . . .. . .. . . ... ... .... .. .. . .. .. . . . . . . . ......................... . . . ..... . .......... .. . .......... . . . . . .... ... .. . . . ....... . .... . . . . . .... . ................ . . . ... . .. .. . .... .... . . . .......... . . ... . ........ . ... ... ... . ... . .. . . . . ................................. . . ... . . . . ...... . .
lowQualScore : 0 0 7 7 0 7 7 0 7 888 0 4444 7 9 666666 4 7 1 22 4 22 9 9 888 444 7777 77 77 7 33 00 3 0 7 7 7 7 7 0000000000000000000000000 7 7 3 00000 7 3333333333 33 3 7777777777 5 3 0 4 7 2222 555 88 0 0 0 3333333 0 0000 5 2 2 2 0 0000 8 0000000000000000 0 0 0 555 0 00 88 2 2222 8888 0 0 0 0000000000 0 0 555 5 22222222 0 555 555 555 0 555 0 88 0 0 0 0 222222222222222222222222222222222 4 0 000 8 8 0 0 000000 0 0
consensus : AGAGACGCATTCAAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-AC--GCG---------CTCT----AG-T-GGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GT-CGCTTGA--CCCT-TCGTTTTTGGG-----TGT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTC-CAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAAGGGGCT---------GTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-AT------AAAAAA-AANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAATCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
Reference ( family-2067 ) : AGAGATGCATNCAAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGACGTAGACCTCTCTTAGGTCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCACACTTGCGATACATTTACTCTTGAGAG-T-GGCTGGCCACGAAACCCATATCTCCACAAGCTGTCAGT-CGCTTGA--CCCT-TCGTTTTTGGG-----TGTAGCTCCTTCTCGGCACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGNATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCGATTATCTGACATTAGTT-C-GTGTATCCTTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATTCGGCTACTG-GGAAGGGACC---------GTGNATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTA-GGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-AT------AGAAAAGAANAAAAAAC-----AGAAACAAAAAAAGAAAGAGTAAANTCTT---CCGCTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCATAGG
gi|1 : ----CTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAG-T-GCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCACTACTTAGATGATGCTCACACTTAACGAGTTTCTGTTATATTCCCT
gi|1 : tcGACTACCCCAACTACTTTCGCAAATCGCAGAAT-AAATAGC--------CATGCGCATACTATTACCGACAGTTACTTTCTCCATTCTACAGACGAGTAATTCT-GTGCCTAGTGCCACACGTTTCCACCGCAAGTCCATTTATACTACTCCCCTCCTATGGAATGCACCAACCCGAGCGTTCACCATATGGAGTGGTTATTCC-TGGCCCAGCCAGAAAATGCCTA-GGAATGCCCGCGTCACGTATGCGTTCACTGGCTTCATCTCTCGAGAGGGTCCAAAACGTGACGGATAATTCCA-TCAGTG-TCTCTGTGTTATTTTATTTTTAAAAAGAAGAAAAGAAAA------------GAAAAGAGTAAAAATCTATTTTT---CAACCAATCGATACCGGTC-TCACAGTGAGGC-GGGGCATTTTTCTACATTGTACTCGCATA------TAGCAGctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttaggactaccccaactactttcgcaaatcgcagaataaatagccatgcgcatactattaccgacagttactttctccattctacagacgagtaattctgtgcctagtgccacacgtttccaccgcaagtccatttatactactcccctcctatggaatgcaccaacccgagcgttcaccatatggagtggttattcctggcccagccagaaaatgcctaggaatgcccgcgtcacgtatgcgttcactggcttcatctctcgagagggtccaaaacgtgacggataattccatcagtgtctctgtgttattttatttttaaaaagaagaaaagaaaagaaaagagtaaaaatctatttttcaaccaatcgataccggtctcacagtgaggcggggcatttttctacattgtactcgcatatagcagg
gi|10 : tcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagcctctatgaggtcaaacgtgacatatctcactatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactacttagatgatgctcacacttaacgagtttctgttatattccctctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttagGACGCATACAAGA-GGTGTGTGATTGTCC-C-TTTTTAACG-AT---TGA----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAg
gi|14 : cagggcatgtcataccctctcctctacttgtacacacaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccactgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtggctactgggacctgcccttctatgaacATCCTTCTCCAATGCCGCTGTTCACATCGATTG---------TTCCTTGACCACCATCACTACCTCCT----TCATGGACTTAAATAGCATATTAAGT-------TGTTAT-ACGGG-AGGTGCTA
gi|17 : T---T-A----CACATTCAATATGCTG------TTACATT-CAT--TATGT--AG-AC-TCCATTAATACTGATTTTCAGAGAGAG--ATCTAA--TATC--ATTACCTCCT
gi|2 : AGAGAT-TATTCAAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AG-T-GGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GT-CG-TTGA--CCCT-TTGTTTTTGGG-----TGT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAACCAA-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGCTTAGGGGTGCATCTGGGGAAGGATCTGTCCTCTGTCCCTGCAGTTTTAATTCCTTCTCCAGTTTCTCAATTATCTGACATTAGTC-CAGTGTATCCCTCTCTAATGCCGATGTTCACATCGAGTGCTAGACCCGTTCTTTGACTACCTCCACTAATTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAAGGGGGT---------GTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTTCACTCAGTGGTGCCTG-GTTATTT-AT------AAAAAAAAATAAAAAACAAACAAAAAACAAAAAAAGTAAGAGTAAAATCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGTGGGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCAGAGG
gi|3 : AAAAAGGTACATGCTTTTTCAC-ATTTTCCTG-AT---T-A----CTCGTTTAATGAGCTA------TT-CACTGCAT--TGT-C--AG-TG-TCCG---ATATTAATC--TAGAGAGAGAGTTCTGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTTTCTTAGGTCAACGGTGGACATATCGTCGCTCTCCGCCCCCGAGGGGCGAGC--------------CTCT-----G-TTGGTTGGCCACGAAAT---TACC--CACAAGCT-TC-GT-C-CTTGA--CCAT-TCGTTTTGGGG-----TGT--CTCCTTCT-GG-ACAGTCCCTTTATATCGAAATGATCAG-GAGCCTCGC-ACT----TGAAGCAC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAAGATCTATTCT-------TGTAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTTCC-GTGTATCCTTCTCCAATGCCGCTGTTCACATTGAGTGCTGGACCCATTCCTTCACTACCACCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-GGGTGCTATC---ATTCCA-AGAC-AA--ATCCTTGTGACTAG----GCACGTTTCTG--------CCATT-GCACTATTTGGCTACTG-GGATGGGACT---------GTGAATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCCAGGGAATG---GCGT---ATGCACGT---CTGC-TTTACCT---GAAAGGGTCCAAA-AATGACG--TA-CTCCACTTAGTGGTGCCTG-GTTATTT-AT--------------CCAAAATAC-----AAAAACAGAAAAAGAAGAAGCAAAATCTCATGCTGCTAATCGGGGATGGTCATCACAGCGGAGT-TAGGCATTTGTGTACA-TGTACTCGCATA------TA-CAGACATCAACTA
gi|4 : gtcattctcaagTTTTCCTCTATTTTCTCGGATGAAT-ATGTCCTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAG-T-GCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCAC-
gi|5 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaacaccgttaGACGCATACAAGAGGGTGTGTGATTGTCC-C-TTTTTAACG-AT---G-A----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAAtac
gi|6 : tatgggagctgtatacagatcaacgctgtattccatgtttcaattttccaagggaccgatgataaaccctctcatccttgcgttatcgccagcctgcacaagggtgacttgttactttatgggaggcttggggtcgagtttttcataaaccctggtggacaaaacactgatctgagcacccgtgtccgtcattgttcgtagttgcaatccctggatcgccatttctaccagaaatctggtgaccgtgcgtaattgcccgatgggcacggacaggtctctgaggggcccagaagtatgccgacagggcatgtcataccctctcctctacttgtacacaaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccatgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtgcctactgggacctgcccttctatgaacAGAGATGCATTCAAAAAGGTACACGTTTTTTCAC-ATTTTCCTG-AT---T-A----CTCATTCAATGAGCTC------TT-CGATGCAT--TAT-C--AG-TG-ACCG---ATATTAATC--CAGAGAGAG--CTCCGA--TGTT--G-TGCCTCCTC--GAAGA--TAAACCTCTCTTTGGCCAACGTTGGACATATCGTGGCTCTCCACCCCCAAGGGGCA-A---GCG----------TCT-----GTT-GGTTGGCCACGAAAT-----TCTCCACAAGCT-TC-GT-CA-TTGA--CCCT-TCGTTTTTGGA-----TGT--CTCCTTC-CGG-ACAGTCCATATATATTGAAATGGCCAG-GAGCCTCAC-ACT----TGAA
gi|7 : gggcatatcatccatctcctcctctacttggtcacaaacctcctcaagttcactgtcttctcaaactgactttattgggtcgtagcctacagttattgtcaggcgtctcatgatccacaccattcctgagcagttaagtccttctgaccaggtgaatcctcccgccgagcagttaagtccttcgaccaggtgaatcctccccgtcccctgtaccaactttgacactgcattatcattatcggggatttcgaacatgctggaacacatgactcatacatggagaaagcctgaaatgatcctcctccagccgatgatacggtctgctattcctccttttgtgcatcctggaaccccgagtcggaacctgtcttcctttgAGAGAT-TATTCAAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AG-T-GGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GT-CG-TTGA--CCCT-TTGTTTTTGGG-----TGT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGA
gi|8 : ctcgaagggcatatcatccatctcctcctatacttggccacagaactcctcaagttcacttgtcttctcaaactgacttagttgctacagtcatcttcaggctctcttcaccatccacaccctttcctgagcattaccgatagttcttctgaccaggtgaatctccccgtcccctgtaccacactttacactgcattatcattatcgggtgatttcgaaccatcctggaacacagacagcctgaaatttatcctcctccatcggatgatgtagtctgctattactccttttgtgcatcctggattcccgactcggataacctgtttcgcgtttgATATCGAAATGGTCAA-GAGCCCCAC-ACT----TAAAGTGC-CAT--GGCG-GTTTCTGTT-TATGCCCTTGTTGTGATAAGGGGTGCATCTGGGGAAGAATCTATCCT-------TGCAGTTTAAGTTCTTTCTCCAGTTCCTCAATTATCTGACATTAGTC-CAGTGTATCCCTTTCTAATGCCGCTGTTCACATCGAGTGCTGGACTCGTTCTTTGACTACCTCCACTACTTTCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGTTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GAAAGGGGCT---------GTGGATCAT-TGGTGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CATGACG--TA-TTCCAGTCAGTGGTGCCTG-GTTATTT-AT------T-------AAAAAAA-------AGA---AAAAAAAGAAAGAGTAAATTCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCACCA
gi|9 : A-TTCCACTCAGTGGTGCCTG-GTTATTT-AT------AGAAAA----AAAAAAC-----CC---CAAAAAAAGAAAGAGTAAAATCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATATACATGTA-CAGTCATCAACCATAGGg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGCAGGTGCAATATCATCTCATTCTCTGCTCTACTTCCACAAACGACTCCTCAAGTTCACTGCTTCTCTCAAAACTTTATTGCGTCGATAGCCTACAGTCATTTCAGGTTCCACATCTTCTTTACACCTGGGCAGTTACCGATAGTCCTCTGACCAGGTAATCCTCCCGTCCCCGTGATCCACTGTACTTTCGATAAAAACATATCGTGGATTCTAACTATGCCGGGACCTACTTATGACTGTTCACAACATGGAGAAAGCTAAATTATCCTCTCATCCTATATGCAGTCTCACTCTCCACTGTGAGCTCCTGG
Unaligned ( gi|12 ): TTAAAGGAACCACATATAGAGTTAACCATTTGCATTCTGTATTTCGTAAGCGTGTTCATACGGGACTGATGATAAAACTATTCCATCTGTTCTCGCCAGCCTTGCACAAGGTCGACATGTTGCTTTGTTGATGACTTTGACGCCAAGGTTCTCATAGAACCCTTTCGGACCAGAACACTGACCATCGGCACTTGTAACCATCAGCTGTTGGCACTGTACTCCTGGATTGCAATTTTTTACCATGAAATTAAACGATCAGTGTAATCCAATCAGCACAAAC
Unaligned ( gi|13 ): GAGTGAAAAATTAATCTAGTTGGCCAGGGTTACATTAACGAACAAAACATATGTAAACATGAAATATCGAACCAACCAACCAGCTGGGTACTAACCCCCCTTTGCGGTTGGAAACATAAAATGGACGTATAGGAATTGCAACCTCCCTATAAAATAGCATGGATGTTAGTGATTATATTGGCCCAAATTTAGATATCGTCCCAAAGTTACAAACTCTCTAAACCTAGAGTAGCCCTATCATAC
Unaligned ( gi|15 ): GTGATTGGGTCCGTGGGGAATGCGGGTCAGAGCAGCTTCTAAGACCAAGTATGCCTTTCTTTCCGCAAAAAGGCGAACAAATGAGGTGGTCCTTGAGA
Unaligned ( gi|16 ): CAACACCTCGAAGGCATATCTTCCATCTCCGCCTTTACTTGGGCCACAAAACTGTCGTCAAGGTGCACTGGTCGCGCAGAACTTGACTGA
Unaligned ( gi|18 ): TGTCGTCTATCTGGACATTCCTTCATCAAATGATCAGGAGAGTCGCATATGAAGCA
Alignments
lowQualScore : 1 11111 222222 11 11 111 11 11 11 11 9999999999999999999999999 33333 1 1 222 11 1 33333 11 1 1 1 1111 111 11 1 1 4444444 1111 4444444444444444 111 1 22 11 2222 1111 1 1 1 444444444 1 111 33333333 111 111 111 1 111 1 11 666666666666666666666666666666 222222 111 222222
lowQualScore : 0 66666 1 0 1 8 5 1 5 888 5 9999 0 1 555555 4 2 1 22 4 22 8 8 777 444 8888 55 55 5 88 88 7 1 6 6 0 6 6 3333333333333333333333333 7 77777 6 3 3 999 88 3 33333 88 5 3 5 1 5 4444 000 33 0 0 3333333 2 0 0 0 1 7777 0 9999999999999999 8 8 1 777 0 55 33 3 1111 0000 0 0 0 000000000 3 0 0 777 2 66666666 9 777 777 777 0 777 0 33 8 5 8 8 8 111111111111111111111111111111 333333 444 0 8 8 333333 8 1
lowQualScore : . ..... . . . . . . . ... . .... . . ...... . . . .. . .. . . ... ... .... .. .. . .. .. . . . . . . . ......................... . ..... . . . ... .. . ..... .. . . . . . .... ... .. . . ....... . . . . . .... . ................ . . . ... . .. .. . .... .... . . . ......... . . . ... . ........ . ... ... ... . ... . .. . . . . . .............................. ...... ... . . . ...... . .
lowQualScore : 0 77777 7 7 0 7 7 0 7 888 0 4444 7 9 666666 4 7 1 22 4 22 9 9 888 444 7777 77 77 7 33 33 3 0 7 7 7 7 7 0000000000000000000000000 3 88888 7 3 3 333 33 3 33333 33 5 3 0 4 7 2222 555 88 0 0 3333333 5 2 2 2 0 0000 8 0000000000000000 0 0 0 555 0 00 88 2 2222 8888 0 0 0 000000000 2 2 0 555 5 22222222 2 555 555 555 0 555 0 88 0 0 0 0 0 000000000000000000000000000000 000000 000 8 0 0 000000 0 0
consensus : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG---------CTCT----AGTGGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GTC-GCTTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AAAAAAAANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
Reference ( family-2067 ) : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-AC--GCG---------CTCT----AGTGGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GTC-GCTTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AAAAAAAANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
gi|1 : ----CTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCACTACTTAGATGATGCTCACACTTAACGAGTTTCTGTTATATTCCCT
gi|1 : tcGACTACCCCAACTACTTTCGCAAATCGCAGAAT-AAATAGC--------CATGCGCATACTATTACCGACAGTTACTTTCTCCATTCTACAGACGAGTAATTCT-GTGCCTAGTGCCACACGTTTCCACCGCAAGTCCATTTATACTACTCCCCTCCTATGGAATGCACCAACCCGAGC-GTTCACCATATGGAGTGGTTATTCC-TGGCCCAGCCAGAAAATGCCTA-GGAATGCCCGCGTCACGTATGCGTTCACTGGCTTCATCTCTCGAGAGGGTCCAAAACGTGACGGATAATTCCA-TCAGTG-TCTCTGTGTTATTTTA-TTTTTAAAAAGAAGAAAAGA---------------AAAGAAAAGAGTAAAAATCTATTTTT---CAACCAATCGATACCGGTC-TCACAGTGAGGC-GGGGCATTTTTCTACATTGTACTCGCATA------TAGCAGctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttaggactaccccaactactttcgcaaatcgcagaataaatagccatgcgcatactattaccgacagttactttctccattctacagacgagtaattctgtgcctagtgccacacgtttccaccgcaagtccatttatactactcccctcctatggaatgcaccaacccgagcgttcaccatatggagtggttattcctggcccagccagaaaatgcctaggaatgcccgcgtcacgtatgcgttcactggcttcatctctcgagagggtccaaaacgtgacggataattccatcagtgtctctgtgttattttatttttaaaaagaagaaaagaaaagaaaagagtaaaaatctatttttcaaccaatcgataccggtctcacagtgaggcggggcatttttctacattgtactcgcatatagcagg
gi|10 : tcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagcctctatgaggtcaaacgtgacatatctcactatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactacttagatgatgctcacacttaacgagtttctgttatattccctctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttagGACGCATAC-----AAGA-GGTGTGTGATTGTCC-C-TTTTTAACG-AT---TGA----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAg
gi|14 : cagggcatgtcataccctctcctctacttgtacacacaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccactgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtggctactgggacctgcccttctatgaacATCCTTCTCCAATGCCGCTGTTCACATCGATTG---------TTCCTTGACCACCATCACTACCTCCT----TCATGGACTTAAATAGCATATTAAGT-------TGTTAT-ACGGG-AGGTGCTA
gi|17 : T---T-A----CACATTCAATATGCTG------TTACATT-CAT--TATGT--AG-AC-TCCATTAATACTGATTTTCAGAGAGAG--ATCTAA--TATC--ATTACCTCCT
gi|2 : AGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC---T--CTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAACCAA-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGCTTAGGGGTGCATCTGGGGAAGGATCTGTCCTCTGTCCCTGCAGTTTTAATTCCTTCTCCAGTTTCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCTAATGCCGATGTTCACATCGAGTGCTAGACCCGTTCTTTGACTACCTCCACTAATTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGGTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTTCACTCAGTGGTGCCTG-GTTATTT-A-TA---AAAAAAAATAAAAAACAAACAAAAAACAAAAAAAGTAAGAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGTGGGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCAGAGG
gi|3 : CATTCTCAAGAAAAAGGTACATGCTTTTTCAC-ATTTTCCTG-AT---T-A----CTCGTTTAATGAGCTA------TT-CACTGCAT--TGT-C--AG-TG-TCCG---ATATTAATC--TAGAGAGAGAGTTCTGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTTTCTTAGGTCAACGGTGGACATATCGTCGCTCTCCGCCCCCGAGGGGCG-A---GC----------CTCT----GTTGGTTGGCCACGAAAT---TACC-CA-CAAGCT-TC-GTC--CTTGAC--CAT-TCGTTTTGGGGT-----GT--CTCCTTCT-GG-ACAGTCCCTTTATATCGAAATGATCAG-GAGCCTCGC-ACT----TGAAGCAC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAAGATCTATTCT-------TGTAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTTCCGTGTATCCTTCTCCAATGCCGCTGTTCACATTGAGTGCTGGACCCATTCCTTCACTACCACCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-GGGTGCTATC---ATTCCA-AGAC-AA--ATCCTTGTGACTAG----GCACGTTTCTG--------CCATT-GCACTATTTGGCTACTG-GGAT-G---------GGACTGTGAATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCCAGGGAATG---GCGT---ATGCACGT---CTGC-TTTACCT---GAAAGGGTCCAAA-AATGACG--TA-CTCCACTTAGTGGTGCCTG-GTTATTT-A-T-----------CCAAAATAC-----AAAAACAGAAAAAGAAGAAGCAAAA------TCTCATGCTGCTAATCGGGGATGGTCATCACAGCGGAGT-TAGGCATTTGTGTACA-TGTACTCGCATA------TA-CAGACATCAACTA
gi|4 : gtTTTTCCTCTATTTTCTCGGATGAAT-ATGTCCTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCAC-
gi|5 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaacaccgttaGACGCATAC-----AAGAGGGTGTGTGATTGTCC-C-TTTTTAACG-AT---G-A----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAAtac
gi|6 : tatgggagctgtatacagatcaacgctgtattccatgtttcaattttccaagggaccgatgataaaccctctcatccttgcgttatcgccagcctgcacaagggtgacttgttactttatgggaggcttggggtcgagtttttcataaaccctggtggacaaaacactgatctgagcacccgtgtccgtcattgttcgtagttgcaatccctggatcgccatttctaccagaaatctggtgaccgtgcgtaattgcccgatgggcacggacaggtctctgaggggcccagaagtatgccgacagggcatgtcataccctctcctctacttgtacacaaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccatgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtgcctactgggacctgcccttctatgaacAGAGATGCATTC-----AAAAAGGTACACGTTTTTTCAC-ATTTTCCTG-AT---T-A----CTCATTCAATGAGCTC------TT-CGATGCAT--TAT-C--AG-TG-ACCG---ATATTAATC--CAGAGAGAG--CTCCGA--TGTT--G-TGCCTCCTC--GAAGA--TAAACCTCTCTTTGGCCAACGTTGGACATATCGTGGCTCTCCACCCCCAAGGGGCA-A---GCG----------TCT----GTTGGTTGGCCACGAAAT-----TCTCCACAAGCT-TC-GTC-A-TTGAC--CCT-TCGTTTTTGGAT-----GT--CTCCTTC-CGG-ACAGTCCATATATATTGAAATGGCCAG-GAGCCTCAC-ACT----TGAA
gi|7 : gggcatatcatccatctcctcctctacttggtcacaaacctcctcaagttcactgtcttctcaaactgactttattgggtcgtagcctacagttattgtcaggcgtctcatgatccacaccattcctgagcagttaagtccttctgaccaggtgaatcctcccgccgagcagttaagtccttcgaccaggtgaatcctccccgtcccctgtaccaactttgacactgcattatcattatcggggatttcgaacatgctggaacacatgactcatacatggagaaagcctgaaatgatcctcctccagccgatgatacggtctgctattcctccttttgtgcatcctggaaccccgagtcggaacctgtcttcctttgAGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGA
gi|8 : ctcgaagggcatatcatccatctcctcctatacttggccacagaactcctcaagttcacttgtcttctcaaactgacttagttgctacagtcatcttcaggctctcttcaccatccacaccctttcctgagcattaccgatagttcttctgaccaggtgaatctccccgtcccctgtaccacactttacactgcattatcattatcgggtgatttcgaaccatcctggaacacagacagcctgaaatttatcctcctccatcggatgatgtagtctgctattactccttttgtgcatcctggattcccgactcggataacctgtttcgcgtttgATATCGAAATGGTCAA-GAGCCCCAC-ACT----TAAAGTGC-CAT--GGCG-GTTTCTGTT-TATGCCCTTGTTGTGATAAGGGGTGCATCTGGGGAAGAATCTATCCT-------TGCAGTTTAAGTTCTTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTTTCTAATGCCGCTGTTCACATCGAGTGCTGGACTCGTTCTTTGACTACCTCCACTACTTTCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGTTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GAAA-G---------GGGCTGTGGATCAT-TGGTGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CATGACG--TA-TTCCAGTCAGTGGTGCCTG-GTTATTT-ATT----AAAAAAAAGA-----------------AAAAAAAGAAAGAGTAAAT------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCACCA
gi|9 : A-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AGAAAAAA---AAAAC-----CC---CAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATATACATGTA-CAGTCATCAACCATAGGg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGCAGGTGCAATATCATCTCATTCTCTGCTCTACTTCCACAAACGACTCCTCAAGTTCACTGCTTCTCTCAAAACTTTATTGCGTCGATAGCCTACAGTCATTTCAGGTTCCACATCTTCTTTACACCTGGGCAGTTACCGATAGTCCTCTGACCAGGTAATCCTCCCGTCCCCGTGATCCACTGTACTTTCGATAAAAACATATCGTGGATTCTAACTATGCCGGGACCTACTTATGACTGTTCACAACATGGAGAAAGCTAAATTATCCTCTCATCCTATATGCAGTCTCACTCTCCACTGTGAGCTCCTGG
Unaligned ( gi|12 ): TTAAAGGAACCACATATAGAGTTAACCATTTGCATTCTGTATTTCGTAAGCGTGTTCATACGGGACTGATGATAAAACTATTCCATCTGTTCTCGCCAGCCTTGCACAAGGTCGACATGTTGCTTTGTTGATGACTTTGACGCCAAGGTTCTCATAGAACCCTTTCGGACCAGAACACTGACCATCGGCACTTGTAACCATCAGCTGTTGGCACTGTACTCCTGGATTGCAATTTTTTACCATGAAATTAAACGATCAGTGTAATCCAATCAGCACAAAC
Unaligned ( gi|13 ): GAGTGAAAAATTAATCTAGTTGGCCAGGGTTACATTAACGAACAAAACATATGTAAACATGAAATATCGAACCAACCAACCAGCTGGGTACTAACCCCCCTTTGCGGTTGGAAACATAAAATGGACGTATAGGAATTGCAACCTCCCTATAAAATAGCATGGATGTTAGTGATTATATTGGCCCAAATTTAGATATCGTCCCAAAGTTACAAACTCTCTAAACCTAGAGTAGCCCTATCATAC
Unaligned ( gi|15 ): GTGATTGGGTCCGTGGGGAATGCGGGTCAGAGCAGCTTCTAAGACCAAGTATGCCTTTCTTTCCGCAAAAAGGCGAACAAATGAGGTGGTCCTTGAGA
Unaligned ( gi|16 ): CAACACCTCGAAGGCATATCTTCCATCTCCGCCTTTACTTGGGCCACAAAACTGTCGTCAAGGTGCACTGGTCGCGCAGAACTTGACTGA
Unaligned ( gi|18 ): TGTCGTCTATCTGGACATTCCTTCATCAAATGATCAGGAGAGTCGCATATGAAGCA
Alignments
lowQualScore : 1 11111 222222 11 11 111 11 11 11 11 7777777777777777777777777 33333 1 1 222 11 1 33333 11 1 1 1 1111 111 11 1 1 4444444 1111 4444444444444444 111 1 22 11 2222 1111 1 1 1 444444444 1 111 33333333 111 111 111 1 111 1 11 666666666666666666666666666666 222222 111 222222
lowQualScore : 0 66666 1 0 1 8 5 1 5 888 5 9999 0 1 555555 4 2 1 22 4 22 8 8 777 444 8888 55 55 5 88 88 7 1 6 6 0 6 6 4444444444444444444444444 7 77777 6 3 3 999 88 3 33333 88 5 3 5 1 5 4444 000 33 0 0 3333333 2 0 0 0 1 7777 0 9999999999999999 8 8 1 777 0 55 33 3 1111 0000 0 0 0 000000000 3 0 0 777 2 66666666 9 777 777 777 0 777 0 33 8 5 8 8 8 111111111111111111111111111111 333333 444 0 8 8 333333 8 1
lowQualScore : . ..... . . . . . . . ... . .... . . ...... . . . .. . .. . . ... ... .... .. .. . .. .. . . . . . . . ......................... . ..... . . . ... .. . ..... .. . . . . . .... ... .. . . ....... . . . . . .... . ................ . . . ... . .. .. . .... .... . . . ......... . . . ... . ........ . ... ... ... . ... . .. . . . . . .............................. ...... ... . . . ...... . .
lowQualScore : 0 77777 7 7 0 7 7 0 7 888 0 4444 7 9 666666 4 7 1 22 4 22 9 9 888 444 7777 77 77 7 33 33 3 0 7 7 7 7 7 7777777777777777777777777 3 88888 7 3 3 333 33 3 33333 33 5 3 0 4 7 2222 555 88 0 0 3333333 5 2 2 2 0 0000 8 0000000000000000 0 0 0 555 0 00 88 2 2222 8888 0 0 0 000000000 2 2 0 555 5 22222222 2 555 555 555 0 555 0 88 0 0 0 0 0 000000000000000000000000000000 000000 000 8 0 0 000000 0 0
consensus : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG---------CTCT----AGTGGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GTC-GCTTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AAAAAAAANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
Reference ( family-2067 ) : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG---------CTCT----AGTGGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GTC-GCTTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AAAAAAAANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
gi|1 : ----CTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCACTACTTAGATGATGCTCACACTTAACGAGTTTCTGTTATATTCCCT
gi|1 : tcGACTACCCCAACTACTTTCGCAAATCGCAGAAT-AAATAGC--------CATGCGCATACTATTACCGACAGTTACTTTCTCCATTCTACAGACGAGTAATTCT-GTGCCTAGTGCCACACGTTTCCACCGCAAGTCCATTTATACTACTCCCCTCCTATGGAATGCACCAACCCGAGC-GTTCACCATATGGAGTGGTTATTCC-TGGCCCAGCCAGAAAATGCCTA-GGAATGCCCGCGTCACGTATGCGTTCACTGGCTTCATCTCTCGAGAGGGTCCAAAACGTGACGGATAATTCCA-TCAGTG-TCTCTGTGTTATTTTA-TTTTTAAAAAGAAGAAAAGA---------------AAAGAAAAGAGTAAAAATCTATTTTT---CAACCAATCGATACCGGTC-TCACAGTGAGGC-GGGGCATTTTTCTACATTGTACTCGCATA------TAGCAGctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttaggactaccccaactactttcgcaaatcgcagaataaatagccatgcgcatactattaccgacagttactttctccattctacagacgagtaattctgtgcctagtgccacacgtttccaccgcaagtccatttatactactcccctcctatggaatgcaccaacccgagcgttcaccatatggagtggttattcctggcccagccagaaaatgcctaggaatgcccgcgtcacgtatgcgttcactggcttcatctctcgagagggtccaaaacgtgacggataattccatcagtgtctctgtgttattttatttttaaaaagaagaaaagaaaagaaaagagtaaaaatctatttttcaaccaatcgataccggtctcacagtgaggcggggcatttttctacattgtactcgcatatagcagg
gi|10 : tcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagcctctatgaggtcaaacgtgacatatctcactatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactacttagatgatgctcacacttaacgagtttctgttatattccctctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttagGACGCATAC-----AAGA-GGTGTGTGATTGTCC-C-TTTTTAACG-AT---TGA----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAg
gi|14 : cagggcatgtcataccctctcctctacttgtacacacaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccactgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtggctactgggacctgcccttctatgaacATCCTTCTCCAATGCCGCTGTTCACATCGATTG---------TTCCTTGACCACCATCACTACCTCCT----TCATGGACTTAAATAGCATATTAAGT-------TGTTAT-ACGGG-AGGTGCTA
gi|17 : T---T-A----CACATTCAATATGCTG------TTACATT-CAT--TATGT--AG-AC-TCCATTAATACTGATTTTCAGAGAGAG--ATCTAA--TATC--ATTACCTCCT
gi|2 : AGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC---T--CTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAACCAA-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGCTTAGGGGTGCATCTGGGGAAGGATCTGTCCTCTGTCCCTGCAGTTTTAATTCCTTCTCCAGTTTCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCTAATGCCGATGTTCACATCGAGTGCTAGACCCGTTCTTTGACTACCTCCACTAATTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGGTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTTCACTCAGTGGTGCCTG-GTTATTT-A-TA---AAAAAAAATAAAAAACAAACAAAAAACAAAAAAAGTAAGAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGTGGGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCAGAGG
gi|3 : CATTCTCAAGAAAAAGGTACATGCTTTTTCAC-ATTTTCCTG-AT---T-A----CTCGTTTAATGAGCTA------TT-CACTGCAT--TGT-C--AG-TG-TCCG---ATATTAATC--TAGAGAGAGAGTTCTGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTTTCTTAGGTCAACGGTGGACATATCGTCGCTCTCCGCCCCCGAGGGGCG-A---GC----------CTCT----GTTGGTTGGCCACGAAAT---TACC-CA-CAAGCT-TC-GTC--CTTGAC--CAT-TCGTTTTGGGGT-----GT--CTCCTTCT-GG-ACAGTCCCTTTATATCGAAATGATCAG-GAGCCTCGC-ACT----TGAAGCAC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAAGATCTATTCT-------TGTAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTTCCGTGTATCCTTCTCCAATGCCGCTGTTCACATTGAGTGCTGGACCCATTCCTTCACTACCACCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-GGGTGCTATC---ATTCCA-AGAC-AA--ATCCTTGTGACTAG----GCACGTTTCTG--------CCATT-GCACTATTTGGCTACTG-GGAT-G---------GGACTGTGAATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCCAGGGAATG---GCGT---ATGCACGT---CTGC-TTTACCT---GAAAGGGTCCAAA-AATGACG--TA-CTCCACTTAGTGGTGCCTG-GTTATTT-A-T-----------CCAAAATAC-----AAAAACAGAAAAAGAAGAAGCAAAA------TCTCATGCTGCTAATCGGGGATGGTCATCACAGCGGAGT-TAGGCATTTGTGTACA-TGTACTCGCATA------TA-CAGACATCAACTA
gi|4 : gtTTTTCCTCTATTTTCTCGGATGAAT-ATGTCCTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCAC-
gi|5 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaacaccgttaGACGCATAC-----AAGAGGGTGTGTGATTGTCC-C-TTTTTAACG-AT---G-A----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAAtac
gi|6 : tatgggagctgtatacagatcaacgctgtattccatgtttcaattttccaagggaccgatgataaaccctctcatccttgcgttatcgccagcctgcacaagggtgacttgttactttatgggaggcttggggtcgagtttttcataaaccctggtggacaaaacactgatctgagcacccgtgtccgtcattgttcgtagttgcaatccctggatcgccatttctaccagaaatctggtgaccgtgcgtaattgcccgatgggcacggacaggtctctgaggggcccagaagtatgccgacagggcatgtcataccctctcctctacttgtacacaaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccatgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtgcctactgggacctgcccttctatgaacAGAGATGCATTC-----AAAAAGGTACACGTTTTTTCAC-ATTTTCCTG-AT---T-A----CTCATTCAATGAGCTC------TT-CGATGCAT--TAT-C--AG-TG-ACCG---ATATTAATC--CAGAGAGAG--CTCCGA--TGTT--G-TGCCTCCTC--GAAGA--TAAACCTCTCTTTGGCCAACGTTGGACATATCGTGGCTCTCCACCCCCAAGGGGCA-A---GCG----------TCT----GTTGGTTGGCCACGAAAT-----TCTCCACAAGCT-TC-GTC-A-TTGAC--CCT-TCGTTTTTGGAT-----GT--CTCCTTC-CGG-ACAGTCCATATATATTGAAATGGCCAG-GAGCCTCAC-ACT----TGAA
gi|7 : gggcatatcatccatctcctcctctacttggtcacaaacctcctcaagttcactgtcttctcaaactgactttattgggtcgtagcctacagttattgtcaggcgtctcatgatccacaccattcctgagcagttaagtccttctgaccaggtgaatcctcccgccgagcagttaagtccttcgaccaggtgaatcctccccgtcccctgtaccaactttgacactgcattatcattatcggggatttcgaacatgctggaacacatgactcatacatggagaaagcctgaaatgatcctcctccagccgatgatacggtctgctattcctccttttgtgcatcctggaaccccgagtcggaacctgtcttcctttgAGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGA
gi|8 : ctcgaagggcatatcatccatctcctcctatacttggccacagaactcctcaagttcacttgtcttctcaaactgacttagttgctacagtcatcttcaggctctcttcaccatccacaccctttcctgagcattaccgatagttcttctgaccaggtgaatctccccgtcccctgtaccacactttacactgcattatcattatcgggtgatttcgaaccatcctggaacacagacagcctgaaatttatcctcctccatcggatgatgtagtctgctattactccttttgtgcatcctggattcccgactcggataacctgtttcgcgtttgATATCGAAATGGTCAA-GAGCCCCAC-ACT----TAAAGTGC-CAT--GGCG-GTTTCTGTT-TATGCCCTTGTTGTGATAAGGGGTGCATCTGGGGAAGAATCTATCCT-------TGCAGTTTAAGTTCTTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTTTCTAATGCCGCTGTTCACATCGAGTGCTGGACTCGTTCTTTGACTACCTCCACTACTTTCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGTTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GAAA-G---------GGGCTGTGGATCAT-TGGTGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CATGACG--TA-TTCCAGTCAGTGGTGCCTG-GTTATTT-ATT----AAAAAAAAGA-----------------AAAAAAAGAAAGAGTAAAT------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCACCA
gi|9 : A-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AGAAAAAA---AAAAC-----CC---CAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATATACATGTA-CAGTCATCAACCATAGGg
blockSeqs : G TCAAG A T A T T G GAA . TGTC T GAAGCA A T G AT G TA A A TTA TTC AGTT AT CG T CC CG A T G G C C CACTTGCGATACATTTACTCTTGAG T CCATA A G A CGC TC C TGACT AG T C T G . . AA . . . . C A . ATATTAAGT . . G . . C . T . ACC . . . . T . . C . T . . . . . . . . C . . T AAAAAAAAATAAAAAACAAACAAAAAA . ATG G . TACATG . T
blockSeqs : G . A C A . C . . . . T . . A G . . . . . . C AT . . . . . A A G G C C AGCGTCT T TA . . . G . . . . T . T . . . AC . . . . C T . T . . T . . . . T . ACC . . . . T . . C . G . . . . . . . . C . . . AGAAAAAAAAAACCC . . . . . .
blockSeqs : . . G A T . T . . . . T . . A G . . . . . . T CT . . . . . A A G G C C AGCCTCT T T . . . C . . . . . . T . . . GC . . . C A . T . . G . . . . T . G . . . . T . . C . T . . . . . . . . G . . . CCAAAATACAAAAA . . . . . .
blockSeqs : . . A T A . A . . . . T . . A C . . . . . . C CT . . . . . A T G G C C AGCGTCT T . . . . A . . . . . . T . . . T . T . . T . C . . . AAAAAAAAGA . . . . . .
blockSeqs : . A T A . C . . . . T . . G G . . . . . . C CT . . . . . . T . . . . AGCGTCT . . . . . G . . . . . . T . . .
blockSeqs : . . T . . . . T . . T G . . . . . . . C . . . . . .
blockSeqs : . . . T . . G G . . . . . .
blockSeqs : . . . . A . . . . . . .
blockSeqCons : ****** ** ** C** CT** ** ** ** ** AGCGTCT****************** T**** G** ** ***** ** **** **** T*************** AAAAAAAAAA******************** ******
originalCons : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG---------CTCT----AGTGGCTGGCCACGAAAC---TATCTCC-CAAGCT-TC-GTC-GCTTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-T----AAAAAAAANAAAAAAC-----AAAAACAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
finalCons : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATTC--AGAGAGAGCT--CCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCAAGCGTCT------------------AGTGGCTGGCCACGAAACT----TCTCC-CAAGCT-TC-GTCG--TTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGCT---------------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-A-TAAAAAAAAAA--------------------CAAAAAAAGAAAGAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGCAGGTGCAATATCATCTCATTCTCTGCTCTACTTCCACAAACGACTCCTCAAGTTCACTGCTTCTCTCAAAACTTTATTGCGTCGATAGCCTACAGTCATTTCAGGTTCCACATCTTCTTTACACCTGGGCAGTTACCGATAGTCCTCTGACCAGGTAATCCTCCCGTCCCCGTGATCCACTGTACTTTCGATAAAAACATATCGTGGATTCTAACTATGCCGGGACCTACTTATGACTGTTCACAACATGGAGAAAGCTAAATTATCCTCTCATCCTATATGCAGTCTCACTCTCCACTGTGAGCTCCTGG
Unaligned ( gi|12 ): TTAAAGGAACCACATATAGAGTTAACCATTTGCATTCTGTATTTCGTAAGCGTGTTCATACGGGACTGATGATAAAACTATTCCATCTGTTCTCGCCAGCCTTGCACAAGGTCGACATGTTGCTTTGTTGATGACTTTGACGCCAAGGTTCTCATAGAACCCTTTCGGACCAGAACACTGACCATCGGCACTTGTAACCATCAGCTGTTGGCACTGTACTCCTGGATTGCAATTTTTTACCATGAAATTAAACGATCAGTGTAATCCAATCAGCACAAAC
Unaligned ( gi|13 ): GAGTGAAAAATTAATCTAGTTGGCCAGGGTTACATTAACGAACAAAACATATGTAAACATGAAATATCGAACCAACCAACCAGCTGGGTACTAACCCCCCTTTGCGGTTGGAAACATAAAATGGACGTATAGGAATTGCAACCTCCCTATAAAATAGCATGGATGTTAGTGATTATATTGGCCCAAATTTAGATATCGTCCCAAAGTTACAAACTCTCTAAACCTAGAGTAGCCCTATCATAC
Unaligned ( gi|15 ): GTGATTGGGTCCGTGGGGAATGCGGGTCAGAGCAGCTTCTAAGACCAAGTATGCCTTTCTTTCCGCAAAAAGGCGAACAAATGAGGTGGTCCTTGAGA
Unaligned ( gi|16 ): CAACACCTCGAAGGCATATCTTCCATCTCCGCCTTTACTTGGGCCACAAAACTGTCGTCAAGGTGCACTGGTCGCGCAGAACTTGACTGA
Unaligned ( gi|18 ): TGTCGTCTATCTGGACATTCCTTCATCAAATGATCAGGAGAGTCGCATATGAAGCA
Alignments
lowQualScore : 1 11111 222222 11 11 111 11 11 11 11 6666666666666666666666666 3333333 1 1 222 11 1 33333 11 1 1 1 1111 111 11 1 1 4444444 1111 4444444444444444 111 1 22 11 2222 1111 1 1 1 444444444 1 111 33333333 111 111 111 1 111 1 11 2222 55555555555555555 22222 222222 111 222222
lowQualScore : 0 66666 1 0 1 8 5 1 5 888 5 9999 0 1 555555 4 2 1 22 4 22 8 8 777 444 8888 55 55 5 88 88 7 1 6 6 0 6 6 0000000000000000000000000 7 7777777 6 3 3 333 88 3 33333 88 5 3 5 1 5 4444 000 33 0 0 3333333 2 0 0 0 1 7777 0 9999999999999999 8 8 1 777 0 55 33 3 1111 0000 0 0 0 000000000 3 0 0 777 2 66666666 9 777 777 777 0 777 0 33 8 5 8 8 8888 8 8 66666666666666666 00000 8 333333 444 0 8 8 333333 8 1
lowQualScore : . ..... . . . . . . . ... . .... . . ...... . . . .. . .. . . ... ... .... .. .. . .. .. . . . . . . . ......................... . ....... . . . ... .. . ..... .. . . . . . .... ... .. . . ....... . . . . . .... . ................ . . . ... . .. .. . .... .... . . . ......... . . . ... . ........ . ... ... ... . ... . .. . . . . .... . . ................. ..... . ...... ... . . . ...... . .
lowQualScore : 0 77777 7 7 0 7 7 0 7 888 0 4444 7 9 666666 4 7 1 22 4 22 9 9 888 444 7777 77 77 7 33 33 3 0 7 7 7 7 7 5555555555555555555555555 3 0000000 7 3 3 555 33 3 33333 33 5 3 0 4 7 2222 555 88 0 0 3333333 5 2 2 2 0 0000 8 0000000000000000 0 0 0 555 0 00 88 2 2222 8888 0 0 0 000000000 2 2 0 555 5 22222222 2 555 555 555 0 555 0 88 0 0 0 0 0000 0 0 00000000000000000 00000 0 000000 000 8 0 0 000000 0 0
consensus : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCACGAAACT----TCTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-AT----AAAA-A-AA-----------------AAA-----CAAAAAAAGAAA-GAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
Reference ( family-2067 ) : AGAGACGCATTC-----AAGAAGGTACGCGNTTTTCCAC-ATTTTCNCG-AT---T-A----CTCGTTCAATGAGCTC------TT-CGCTGCAT--TAT-C--AG-TG-TCCG---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTNGGCCAACGGTGGACATATCGTCGCTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCACGAAACT----TCTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TCGTTTTTGGGT-----GT--CTCCTTCTCGG-ACAGTCCTTATATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAAGCGC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAGGATCTATCCT-------TGCAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCCAATGCCGCTGTTCACATCGAGTGCTGGACCCGTTCCTTGACTACCNCCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTNCTATC---ATTCCA-AGAC-AG--ATCCTTGTGCCTAG----GCACGTTTCCGCC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGCTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGCGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTCCACTCAGTGGTGCCTG-GTTATTT-AT----AAAA-A-AA-----------------AAA-----CAAAAAAAGAAA-GAGTAAAA------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCANAGG
gi|1 : ----CTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCACTACTTAGATGATGCTCACACTTAACGAGTTTCTGTTATATTCCCT
gi|1 : tcGACTACCCCAACTACTTTCGCAAATCGCAGAAT-AAATAGC--------CATGCGCATACTATTACCGACAGTTACTTTCTCCATTCTACAGACGAGTAATTCT-GTGCCTAGTGCCACACGTTTCCACCGCAAGTCCATTTATACTACTCCCCTCCTATGGAATGCACCAACCCGAGC-GTTCACCATATGGAGTGGTTATTCC-TGGCCCAGCCAGAAAATGCCTA-GGAATGCCCGCGTCACGTATGCGTTCACTGGCTTCATCTCTCGAGAGGGTCCAAAACGTGACGGATAATTCCA-TCAGTG-TCTCTGTGTTATTTTATTTTTAAAA-A-GA-----------------AGA-----AAAGAAAAGAAAAGAGTAAAAATCTATTTTT---CAACCAATCGATACCGGTC-TCACAGTGAGGC-GGGGCATTTTTCTACATTGTACTCGCATA------TAGCAGctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttaggactaccccaactactttcgcaaatcgcagaataaatagccatgcgcatactattaccgacagttactttctccattctacagacgagtaattctgtgcctagtgccacacgtttccaccgcaagtccatttatactactcccctcctatggaatgcaccaacccgagcgttcaccatatggagtggttattcctggcccagccagaaaatgcctaggaatgcccgcgtcacgtatgcgttcactggcttcatctctcgagagggtccaaaacgtgacggataattccatcagtgtctctgtgttattttatttttaaaaagaagaaaagaaaagaaaagagtaaaaatctatttttcaaccaatcgataccggtctcacagtgaggcggggcatttttctacattgtactcgcatatagcagg
gi|10 : tcctcattcaaaactcgaagcattcgttccatattatctaagatgatccgatattacctaccgatagcccaaattgttcgatgctccctcccgatgacgtagcctctatgaggtcaaacgtgacatatctcactatcgccccgagtagcacacttgcgatacatttactcttgagagtgccgcaacgatacccatatctcccaagctgtcagtccgcttgcctccctctcgtttctgtgttgactgtagttctatctcggcgcagtccttataatcgaaaatgtcaaggagccccactacttagatgatgctcacacttaacgagtttctgttatattccctctctcctgaacttagcgcgactgttcatgtggaatggagcaagcatttcccacttcctgtgttggcaagttttagatgttcttatctatcccggtccctttctaacttttatttctgtatctataaagccagatgttattaattacacaccttcacgtaagccgaccacctgtgagttcgacgaaattacagtcggtgccacgttctgcacttccctcttagGACGCATAC-----AAGA-GGTGTGTGATTGTCC-C-TTTTTAACG-AT---TGA----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAg
gi|14 : cagggcatgtcataccctctcctctacttgtacacacaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccactgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtggctactgggacctgcccttctatgaacATCCTTCTCCAATGCCGCTGTTCACATCGATTG---------TTCCTTGACCACCATCACTACCTCCT----TCATGGACTTAAATAGCATATTAAGT-------TGTTAT-ACGGG-AGGTGCTA
gi|17 : T---T-A----CACATTCAATATGCTG------TTACATT-CAT--TATGT--AG-AC-TCCATTAATACTGATTTTCAGAGAGAG--ATCTAA--TATC--ATTACCTCCT
gi|2 : AGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAACT-----CTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGAACCAA-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGCTTAGGGGTGCATCTGGGGAAGGATCTGTCCTCTGTCCCTGCAGTTTTAATTCCTTCTCCAGTTTCTCAATTATCTGACATTAGTCCAGTGTATCCCTCTCTAATGCCGATGTTCACATCGAGTGCTAGACCCGTTCTTTGACTACCTCCACTAATTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGGTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GGAA-G---------GGGGTGTGGATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CGTGACG--TA-TTTCACTCAGTGGTGCCTG-GTTATTT-AT----AAAA-A-AAAATAAAAAACAAACAAAAAA-----CAAAAAAAGTAA-GAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGTGGGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCATCAACCAGAGG
gi|3 : CATTCTCAAGAAAAAGGTACATGCTTTTTCAC-ATTTTCCTG-AT---T-A----CTCGTTTAATGAGCTA------TT-CACTGCAT--TGT-C--AG-TG-TCCG---ATATTAATC--TAGAGAGAGAGTTCTGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTTTCTTAGGTCAACGGTGGACATATCGTCGCTCTCCGCCCCCGAGGGGCG-A---GCC----------TCT----GTTGGTTGGCCACGAAATT----ACCCA-CAAGCT-TC-GTC-C-TTGAC--CAT-TCGTTTTGGGGT-----GT--CTCCTTCT-GG-ACAGTCCCTTTATATCGAAATGATCAG-GAGCCTCGC-ACT----TGAAGCAC-CAC--GACG-GTTTCTGTT-TATGCCCTTGTTGTGATTAGGGGTGCATCTGGGGAAAGATCTATTCT-------TGTAGTTTAAATTCCTTCTCCAGTTCCTCAATTATCTGACATTAGTTCCGTGTATCCTTCTCCAATGCCGCTGTTCACATTGAGTGCTGGACCCATTCCTTCACTACCACCACTACTTCCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-GGGTGCTATC---ATTCCA-AGAC-AA--ATCCTTGTGACTAG----GCACGTTTCTG--------CCATT-GCACTATTTGGCTACTG-GGAT-G---------GGACTGTGAATCAT-TGGAGT---TATTCCCTGGC--------AGAATGCCCAGGGAATG---GCGT---ATGCACGT---CTGC-TTTACCT---GAAAGGGTCCAAA-AATGACG--TA-CTCCACTTAGTGGTGCCTG-GTTATTT-ATCC--AAAATACAA-----------------AAA-----CAGAAAAAGAAG-AAGCAAAA------TCTCATGCTGCTAATCGGGGATGGTCATCACAGCGGAGT-TAGGCATTTGTGTACA-TGTACTCGCATA------TA-CAGACATCAACTA
gi|4 : gtTTTTCCTCTATTTTCTCGGATGAAT-ATGTCCTCATTCAA--AACTCGAAGCATT-CGTTCCATATTAT-CTAAGATGATCCG---ATATTACCT---ACCGATAG--C-CCAAATTGTTCGA-TGCTCCCTCCCGATGACGTAG-CCTCTATGAGGTCAAACGTG-ACATATC-TCACTATC-GCCCC-GAGTAGCACACTTGCGATACATTTACTCTTGAGAGTGCC--GCAACGATACCCATATCTCC-CAAGCTGTCAGTCCGCTTGCCTCCCTCTCGTTTCTGTGTTGACTGTAGTTCTATCTCGGCGCAGTCCTTATA-ATCGAAAATGTCAAGGAGCCCCAC-
gi|5 : ttatccatctctctcctacttgccacagatataatccatgcaaaaagtgttttagtctacgtctatctcagaactcattgactctgtaacggctcacagttcatcttcttagtgtctcctcaccagccacaacccttctcatctgagcagttccccgataagttttctccactgacaggtgaatcctccccgggtcctcctttaccaaatttaacacactgcctaacttattctatgtatcgtgattttgcgactatgcttgaacttatgacaaagcttatatgttatccatcggctcctgaactcggatatgatagatcattgactatttactgctcttttacttatacctggataccacatacgttatcctggatgagtaacaactatagtttcaaagtttaattttcaacaccgttaGACGCATAC-----AAGAGGGTGTGTGATTGTCC-C-TTTTTAACG-AT---G-A----CTTGTCCAATGAGCAT------TT-CTCTGCCA--TGT-C--AG-TG-TCAA---ATATCAAtac
gi|6 : tatgggagctgtatacagatcaacgctgtattccatgtttcaattttccaagggaccgatgataaaccctctcatccttgcgttatcgccagcctgcacaagggtgacttgttactttatgggaggcttggggtcgagtttttcataaaccctggtggacaaaacactgatctgagcacccgtgtccgtcattgttcgtagttgcaatccctggatcgccatttctaccagaaatctggtgaccgtgcgtaattgcccgatgggcacggacaggtctctgaggggcccagaagtatgccgacagggcatgtcataccctctcctctacttgtacacaaatcaccccagcccacctttctccccgtgctgagaaacttcctgcgtcgctaccaccaggcattcctttgaagtttccctatccactcaccccctccagtgaatcccctggtcccttgcaccaaaccctagctctatcattgcaacaacgtcggggaattcaaacgggtctggggctgactcatccatgacgaagcccacctaatgatgtagtacatagattcttccccctcctctggtgcctactgggacctgcccttctatgaacAGAGATGCATTC-----AAAAAGGTACACGTTTTTTCAC-ATTTTCCTG-AT---T-A----CTCATTCAATGAGCTC------TT-CGATGCAT--TAT-C--AG-TG-ACCG---ATATTAATC--CAGAGAGAG--CTCCGA--TGTT--G-TGCCTCCTC--GAAGA--TAAACCTCTCTTTGGCCAACGTTGGACATATCGTGGCTCTCCACCCCCAAGGGGCA-A---GCG----------TCT----GTTGGTTGGCCACGAAA-T----TCTCCACAAGCT-TC-GTC-A-TTGAC--CCT-TCGTTTTTGGAT-----GT--CTCCTTC-CGG-ACAGTCCATATATATTGAAATGGCCAG-GAGCCTCAC-ACT----TGAA
gi|7 : gggcatatcatccatctcctcctctacttggtcacaaacctcctcaagttcactgtcttctcaaactgactttattgggtcgtagcctacagttattgtcaggcgtctcatgatccacaccattcctgagcagttaagtccttctgaccaggtgaatcctcccgccgagcagttaagtccttcgaccaggtgaatcctccccgtcccctgtaccaactttgacactgcattatcattatcggggatttcgaacatgctggaacacatgactcatacatggagaaagcctgaaatgatcctcctccagccgatgatacggtctgctattcctccttttgtgcatcctggaaccccgagtcggaacctgtcttcctttgAGAGAT-TATTC-----AAGAAGGTACACGTTTTTCCAC-ATTTTCTTG-AT---T-A----CTCATTCAATGAGCTC------TT-CACTGCAT--TAT-C--AG-TG-TCCA---ATATTAATT--CAGAGAGAG--CTCCGA--TGTC--A-TGCCTCCTC--GAAGA--TAGACCTCTCTTTGGCCAACGGTGGACATATCGTCACTATCCGCCCCCGAGGGGCA-A---GCG----------TCT----AGTGGCTGGCCTCGAAAC-----TCTCC-CAAGCT-TC-GTC-G-TTGAC--CCT-TTGTTTTTGGGT-----GT--CTCCTTC-CGG-ACAGTCCTTAAATATCGAAATGGTCAA-GAGCCCCAC-ACT----TGA
gi|8 : ctcgaagggcatatcatccatctcctcctatacttggccacagaactcctcaagttcacttgtcttctcaaactgacttagttgctacagtcatcttcaggctctcttcaccatccacaccctttcctgagcattaccgatagttcttctgaccaggtgaatctccccgtcccctgtaccacactttacactgcattatcattatcgggtgatttcgaaccatcctggaacacagacagcctgaaatttatcctcctccatcggatgatgtagtctgctattactccttttgtgcatcctggattcccgactcggataacctgtttcgcgtttgATATCGAAATGGTCAA-GAGCCCCAC-ACT----TAAAGTGC-CAT--GGCG-GTTTCTGTT-TATGCCCTTGTTGTGATAAGGGGTGCATCTGGGGAAGAATCTATCCT-------TGCAGTTTAAGTTCTTTCTCCAGTTCCTCAATTATCTGACATTAGTCCAGTGTATCCCTTTCTAATGCCGCTGTTCACATCGAGTGCTGGACTCGTTCTTTGACTACCTCCACTACTTTCT----TCATGGGCTTAAATAGC--------T-------TGTTAT-ACCGA-AGTTTCTATC---ATTCCA-AGA--AG--ATCCTTGTGCCTAG----GCACGTTTCCACC-CAAGTCCATT-ATACTATCTGGCTACTG-GAAA-G---------GGGCTGTGGATCAT-TGGTGT---TATTCCCTGGC--------AGAATGCCTATGGAATG---GCGT---ATGCGTGT---CTGG-TTCATCT---GAGAGGGTCCAAA-CATGACG--TA-TTCCAGTCAGTGGTGCCTG-GTTATTT-AT----TAAA-A-AA-----------------AAG-----AAAAAAAAGAAA-GAGTAAAT------TCTT---CCACTAATCGGGGACGGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATA------TA-CAGTCACCA
gi|9 : A-TTCCACTCAGTGGTGCCTG-GTTATTT-AT----AGAA-A-AA-----------------AAAAACCCCAAAAAAAGAAA-GAGTAAAA------TCTT---CCACTAATCGGGGACTGTCATCACAGTGGAGT-GGGGCATTTTTGTACA-TGTACTCGCATATACATGTA-CAGTCATCAACCATAGGg
6 sequences could not be aligned to this reference sequence:
Unaligned ( gi|11 ): TCGCAGGTGCAATATCATCTCATTCTCTGCTCTACTTCCACAAACGACTCCTCAAGTTCACTGCTTCTCTCAAAACTTTATTGCGTCGATAGCCTACAGTCATTTCAGGTTCCACATCTTCTTTACACCTGGGCAGTTACCGATAGTCCTCTGACCAGGTAATCCTCCCGTCCCCGTGATCCACTGTACTTTCGATAAAAACATATCGTGGATTCTAACTATGCCGGGACCTACTTATGACTGTTCACAACATGGAGAAAGCTAAATTATCCTCTCATCCTATATGCAGTCTCACTCTCCACTGTGAGCTCCTGG
Unaligned ( gi|12 ): TTAAAGGAACCACATATAGAGTTAACCATTTGCATTCTGTATTTCGTAAGCGTGTTCATACGGGACTGATGATAAAACTATTCCATCTGTTCTCGCCAGCCTTGCACAAGGTCGACATGTTGCTTTGTTGATGACTTTGACGCCAAGGTTCTCATAGAACCCTTTCGGACCAGAACACTGACCATCGGCACTTGTAACCATCAGCTGTTGGCACTGTACTCCTGGATTGCAATTTTTTACCATGAAATTAAACGATCAGTGTAATCCAATCAGCACAAAC
Unaligned ( gi|13 ): GAGTGAAAAATTAATCTAGTTGGCCAGGGTTACATTAACGAACAAAACATATGTAAACATGAAATATCGAACCAACCAACCAGCTGGGTACTAACCCCCCTTTGCGGTTGGAAACATAAAATGGACGTATAGGAATTGCAACCTCCCTATAAAATAGCATGGATGTTAGTGATTATATTGGCCCAAATTTAGATATCGTCCCAAAGTTACAAACTCTCTAAACCTAGAGTAGCCCTATCATAC
Unaligned ( gi|15 ): GTGATTGGGTCCGTGGGGAATGCGGGTCAGAGCAGCTTCTAAGACCAAGTATGCCTTTCTTTCCGCAAAAAGGCGAACAAATGAGGTGGTCCTTGAGA
Unaligned ( gi|16 ): CAACACCTCGAAGGCATATCTTCCATCTCCGCCTTTACTTGGGCCACAAAACTGTCGTCAAGGTGCACTGGTCGCGCAGAACTTGACTGA
Unaligned ( gi|18 ): TGTCGTCTATCTGGACATTCCTTCATCAAATGATCAGGAGAGTCGCATATGAAGCA