lowQualScore : 777777 1111 3333333333 1 11111111 22 11 111111 11 11 11 55555555555555555555555555555 1 111111 111 1 333 333
lowQualScore : 0 222222 1 6666 2 4 4 9999999999 5 4 4 33333333 1 22 4 88 3 000000 77 55 3 77 88888888888888888888888888888 5 7 3 444444 555 0 555 6 333 4
lowQualScore : . ...... . .... . . . .......... . . . ........ . .. . .. . ...... .. .. . .. ............................. . . . ...... ... . ... . ... .
lowQualScore : 1 222222 7 6666 7 4 4 3333333333 0 9 3 00000000 6 99 0 11 6 555555 55 22 9 99 66666666666666666666666666666 7 3 6 777777 333 5 000 0 555 0
consensus : AAGATTATACCTA------CGCTGTTTACAATANTAGATGAATGT-G-AAAAGA---TNTGAACT-GTNTANAGTT-------CAGATTGTACA-A-CTTT-GTTAATA------ATTTGATGTTTATGATATTT-AATTGACAATCCATTCAA----GAGTTG-----GATTATCAA-TTCTTTT-CAGCATTG-----CGCACTC-TTTTCTTTTNTCAATTTTTACGATATGNCAT
Reference ( gi|1 ) : AAGATTATACCTATAA-TACGCTGTTTACAATATTAGATAAATGT-G-AAAAGA---TATGGACT-GTATAAAGTT-------CAGATTAAACA-A-GTTT-GTTAATA------ATTTGATGTCAATGATATTC-AATTGACAATGAATTCAA----AAAATG-----GATTCTTAA-ACCATTT-CACCATTG-----CACACGC-TTTTCTTTTTTC---TTTTGCCATATGACATTAT
gi|7 : AAGATTATTCCCA------CACTGTTTACGG----AAATAAATGT-G-AA--------------T-GT------TT-------TA-------CA-A-CTTT-GTTAATACATGTAGTTTGATGTTTATTATATTT-AATTGACAATCCATTCAA----GAGATG-----G-TCCTT-------TTT-CAGCACTG-----CACACTC-TTTT
gi|13 : taAAGATTATACCTA------CACTGTGTACAATAGTAGATGAACAT-G-AAAAGA---TAATTAAT-GTTTACAGTT-------C
gi|17 : AAGAATATACCTA------CACTGTTTACAATAATAGATGAg
gi|16 : ctctaAGATTATACCTAT------GCTGTTTACAATATTAGATGGATCT-G-AAAAGA---
gi|3 : GGTTATAC-----A-TACATTGTTTACAATAATAGATAAATAT-G-AAAACA---CTTGAA-T-GTTTACAGTT-------CAGATTGTACA-A-CTTT-AATAGTA------ATTTGATGATTTTAATATTT-GATAAGCAATTCATTCAA----GAGTTG-----TATTATCAA---CTTTT-CAGAATTG-----TGCACTC-TTTTC
gi|8 : aacGATTATACCTG------CGCTGTTTACA--ATCAGATAAA-GTAG-AAAAGATTGTCTGTCCT-ATATAAAGTT--------AGATTGTACA-A-CTTT-GTTAATG------AATCGATGTTTATGATATTTAAATTAA-----AATTCAA----aattacatatgcc
gi|11 : atGGTTATACTTTTA------CTGTTCAGACT--TAGGTGAATTT-GCAAAAGA---TGCGG-CTAGTTTAAAGTT-------CATATTGTACA-A-CTTT-GTTAATA------ATTTGATGT
gi|4 : gcGATTATACATGTACCTACGCAGTTTACAGT------TGAATG--------GA---TTTTAAAT-TTA-AAACTT-------TACATTGCATA-A-CTTT-ATTAATG------ATTCGATGTTGATGATGTT--GATTGA-----AATT------------G-----GATTATCAA-TT--TTT-CAGCATCG-----TGCACTC-TTTTCTTTTt
gi|5 : ttgcTTATACCTA------CACTGTTTACAATGATAGATGAATAT-G-AAAAGA---TTTTAA-T-GTGTACAATT-------AAGGTTGTAAA-A-TTGT-GTTAATA------ATTTGATGCTTATTGTAAT--AATTAACAaatacgttgtgacatcataaatgct
gi|2 : TACACTGTT---TAAATAT-G-AAAAGT---TATGACCT-GT-TAAAGTTATAAGTTCAAATTATACATATATTT-GTCAATA------ATTTCATGTCAATGATATCT-AAGTGGGAATGAATTCAA----GAATTGCAAATCATTATCAA-TTTTTTT-CATCATTG-----CGTATTC-TCCACATCTCTCAATTTTTACGATATATCATtcccacggaagagttaaaactacaatcttttttagcaatacaaacttttcaaaccacatatgat
gi|6 : TACAGTT-------CAGATTGTACA-A-CCTT-CTTGATA------ATTTGATGTTTATGATATTT-AATTGACAGTCCATTCAA----GAGTTG-----AATAATTAA-ATCTTTTCCAGTATTGTGTACTACATGTATTTTCTTTTatttgcag
gi|9 : AGTT-------TAGATTCTACA-A-CTTTTATTAATA------ATTTGAAGCTTATGATATTC-AAGTGCCTATCCCCTTAAGATGAAAATT-----GA----TAATACTATTT-CAGCA-TG-----AGTACGT-TTTTCTTaaactacatcacatatgctgt
gi|14 : AGTT-------CAGATAGTACA-A-CCTT-ATCAGTA------ATTTGATGTTTCTGATATTT-GATT
gi|10 : ttttttcTTT-GTTA-TA------ATTTGATGTTCATGATATTT-TATTGACAATCCATTCAT----GAGTTG-----GATCATTAA-TCCTTTT-TA-----G-----CACAA------TCTTTCGTC---TTTTAC---ATGACA
2 sequences could not be aligned to this particular reference sequence:
Unaligned ( gi|12 ): GACAATCCATTCAAGAGGTGGGTCATTTATCTTTTTCCGAATTGCGCACTCTTCTTTTACATGATATCACATAATATGCTGTT
Unaligned ( gi|15 ): ATTATACCGACACTTTTTACAATGATAGATGAATATGATAGATTTTAATAT
Alignments
lowQualScore : 11 2222222222 111111 111111111 11111 333333
lowQualScore : 88888 0 66 1 3 3 7777777777 4 111111 2 3 3 1 3 3 3 999999 1 4 222222222 888 4 4 4 4 00000 66 333333 1
lowQualScore : ..... . .. . . . .......... . ...... . . . . . . . ...... . . ......... ... . . . . ..... .. ...... .
lowQualScore : 33333 7 66 8 6 6 9999999999 4 000000 4 3 3 0 6 3 3 666666 0 0 777777777 444 0 0 9 0 00000 11 000000 0
consensus : AAGATTATACCTA-----CGCTGTTTACAATA-TAGATGAATGT-G-AAAAGAT-N---TGAACT-GTT-----TANA-G-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G--GA-----TTATCAATCCT-TTT-CAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
Reference ( family-2033 ) : AAGATTATACCTA-----CGCTGTTTACAATANTAGATGAATGT-G-AAAAGAT-N---TGAACT-GTN-----TANA-G-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G--GA-----TTATCAATTCT-TTT-CAGCATTGCGCACT-C-----TTT--TCTTTTNTCAATTTTTACGATATGNCAT
gi|1 : AAGATTATACCTATAATACGCTGTTTACAATATTAGATAAATGT-G-AAAAGAT-A---TGGACT-GTA-----TAAA-G-TTCAGATTAAACA-AG-TTT-GTTAATA------ATTTGATGTCAATGATATTCAATTGACAATGAATTCAAAAAAT-G--GA-----TTCTTAAACCA-TTT-CACCATTGCACACG-C-----TTT--TCTTTTTTC---TTTTGCCATATGACAT
gi|10 : -TTT-GTTA-TA------ATTTGATGTTCATGATATTTTATTGACAATCCATTCATGAGTT-G--GA-----TCATTAATCCT-TTT-TAGCA-----CAAT-C-----TTTCGTCTTTTtat
gi|11 : GGTTATACTTT-----TACTGTTCAGACT--TAGGTGAATTT-GCAAAAGAT-G---CGG-CTAGTT-----TAAA-G-TTCATATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTacatgacaccaata
gi|12 : gcGACAATCCATTCAAGAGGT-G--GG-----TCATTTATCTT-TTT-CCGAATTGCGCACT-C-------T--TCTTTT
gi|13 : AAGATTATACCTA-----CACTGTGTACAATAGTAGATGAACAT-G-AAAAGATAA---TTAA-T-GTT-----TACA-G-TTCacatgatatcacataatatgctgtt
gi|14 : A-G-TTCAGATAGTACA-AC-CTT-ATCAGTA------ATTTGATGTTTCTGATATTTGATTg
gi|15 : ttttttcATTATACCGA-----CACTTTTTACAATGATAGATGAATAT-G--ATAGAT-T---TTAA
gi|16 : AGATTATACCTA-----TGCTGTTTACAATATTAGATGGATCT-G-AAAAGAtat
gi|17 : AAGAATATACCTA-----CACTGTTTACAATAATAGATGA
gi|2 : ctctaTA-----CACTGTTTA------------AATAT-G-AAAAGTT-A---TGACCT-GTTAAAGTTATAAG-TTCAAATTATACATATATTT-GTCAATA------ATTTCATGTCAATGATATCTAAGTGGGAATGAATTCAAGAATT-G--CAAATCATTATCAATTTT-TTT-CATCATTGCGTATT-C-----TCC--ACATCTCTCAATTTTTACGATATATCAT
gi|3 : GGTTATACATA-----CATTGTTTACAATAATAGATAAATAT-G-AAAACAC-T---TGAA-T-GTT-----TACA-G-TTCAGATTGTACA-AC-TTT-AATAGTA------ATTTGATGATTTTAATATTTGATAAGCAATTCATTCAAGAGTT-G--TA-----TTATCAA--CT-TTT-CAGAATTGTGCACT-C-----TTT--TCatttgcag
gi|4 : aacTGTACCTA-----CGCAGTTTACAGT------TGAATG--------GAT-T---TTAA---ATT-----TAAA-ACTTTACATTGCATA-AC-TTT-ATTAATG------ATTCGATGTTGATGATGTT-GATTGA-------------AATT-G--GA-----TTATCAATT---TTT-CAGCATCGTGCACT-C-----TTT--TCTTTT---AA----TACGTTGTGACATaattacatatgcc
gi|5 : ttgcgattatacaTTATACCTA-----CACTGTTTACAATGATAGATGAATAT-G-AAAAGAT-T---TTAA-T-GTG-----TACA-A-TTAAGGTTGTAAA-AT-TGT-GTTAATA------ATTTGATGCTTATTGTA-ATAATTAACATCCCACGGAAGAGTTAA--AA-----CTA-CAATCTT-TTT-TAGCAATACAAACT-T-----TTcataaatgct
gi|6 : -----TACA-G-TTCAGATTGTACA-AC-CTT-CTTGATA------ATTTGATGTTTATGATATTTAATTGACAGTCCATTCAAGAGTT-G--AA-----TAATTAAATCT-TTTCCAGTATTGTGTACTACATGTATTT--TCTTTTcaaaccacatatgat
gi|7 : AAGATTATTCCCA-----CACTGTTTACGG----AAATAAATGT-G-AA---------------T-GTT-----T---------------TACA-AC-TTT-GTTAATACATGTAGTTTGATGTTTATTATATTTAATTGACAATCCATTCAAGAGAT-G--G---------TC---CTT-TTT-CAGCACTGCACACT-C-----TTT--Taaactacatcacatatgctgt
gi|8 : taGATTATACCTG-----CGCTGTTTACAAT--CAGATAAA-GTAG-AAAAGAT-TGTCTGTCCT-ATA-----TAAA-G-TT-AGATTGTACA-AC-TTT-GTTAATG------AATCGATGTTTATGATATTTAAATTAAAATTCA
gi|9 : atA-G-TTTAGATTCTACA-AC-TTTTATTAATA------ATTTGAAGCTTATGATATTCAAGTGCCTATCCCCTTAAGA--T-GAAAA-----TTGATAATACTATTT-CAGCA-TGAGTACG-T-----TTT--TCTTa
Alignments
lowQualScore : 22222 2222222222 11111 11111 11111 3333333
lowQualScore : 88888 0 88888 1 3 3 7777777777 4 00000 55 3 1 3 3 3 999999 1 4 55555 4 333 4 4 4 00000 66 6666666
lowQualScore : ..... . ..... . . . .......... . ..... .. . . . . . ...... . . ..... . ... . . . ..... .. .......
lowQualScore : 33333 7 88888 8 6 6 9999999999 4 00000 99 3 0 6 3 3 666666 0 0 55555 0 000 0 9 0 00000 11 3333333
consensus : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT-N---TGAACT-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
Reference ( family-2033 ) : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT-N---TGAACT-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
gi|1 : AAGATTATACCTATAATACGCTGTTTACAAT-A-TTAGATAAATGT-G-AAAAGAT-A---TGGACT-GT-----ATA-AAG-TTCAGATTAAACA-AG-TTT-GTTAATA------ATTTGATGTCAATGATATTCAATTGACAATGAATTCAAAAAAT-G-----GATTCTT-AAACCA-TTTCACCATTGCACACG-C-----TTT--TCTTTTTTC---TTTTGCCATATGACAT
gi|10 : -TTT-GTTA-TA------ATTTGATGTTCATGATATTTTATTGACAATCCATTCATGAGTT-G-----GATCATT-AATCCT-TTTTAGCA-----CAAT-C-----TTTCGTCTTTTtat
gi|11 : GGTTATACTTT-----TACTGTTCAGACT---T-AGGTGAATTT-GCAAAAGAT-G---CGG-CTAGT-----TTA-AAG-TTCATATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTacatgacaccaata
gi|12 : gcGACAATCCATTCAAGAGGT-G-----GGTCATT-TATCTT-TTTCCGAATTGCGCACT-C-------T--TCTTTT
gi|13 : AAGATTATACCTA-----CACTGTGTACAAT-AGT-AGATGAACAT-G-AAAAGATAA---TTAA-T-GT-----TTA-CAG-TTCacatgatatcacataatatgctgtt
gi|14 : T-----TTT-CAG-TTCAGATAGTACA-AC-CTT-ATCAGTA------ATTTGATGTTTCTGATATTTGATTg
gi|15 : ttATTATACCGA-----CACTTTTTACAATGA-T-AGATGAATAT-G--ATAGAT-T---TTAA
gi|16 : AGATTATACCTA-----TGCTGTTTACAAT-ATT-AGATGGATCT-G-AAAAGAtat
gi|17 : AAGAATATACCTA-----CACTGTTTACAATAA-T-AGATGA
gi|2 : ctctaTA-----CACTGTTTA--------------AATAT-G-AAAAGTT-A---TGACCT-GTTAAAGTTATAAG-TTCAAATTATACATATATTT-GTCAATA------ATTTCATGTCAATGATATCTAAGTGGGAATGAATTCAAGAATT-GCAAATCATTATC-AATTTT-TTTCATCATTGCGTATT-C-----TCC--ACATCTCTCAATTTTTACGATATATCAT
gi|3 : GGTTATACATA-----CATTGTTTACAATAA-T-AGATAAATAT-G-AAAACAC-T---TGAA-T-GT-----TTA-CAG-TTCAGATTGTACA-AC-TTT-AATAGTA------ATTTGATGATTTTAATATTTGATAAGCAATTCATTCAAGAGTT-G-----TATTATC-AA--CT-TTTCAGAATTGTGCACT-C-----TTT--TCatttgcag
gi|4 : aacTGTACCTA-----CGCAGTTTACAGT--------TGAATG--------GAT-T---TTAA---AT-----TTA-AAACTTTACATTGCATA-AC-TTT-ATTAATG------ATTCGATGTTGATGATGTT-GATTGA-------------AATT-G-----GATTATC-AAT--T-TTTCAGCATCGTGCACT-C-----TTT--TCTTTT---AA----TACGTTGTGACATaattacatatgcc
gi|5 : ttgcgattatacaTTATACCTA-----CACTGTTTACAATGA-T-AGATGAATAT-G-AAAAGAT-T---TTAA-T-GT-----GTA-CAA-TTAAGGTTGTAAA-AT-TGT-GTTAATA------ATTTGATGCTTATTGTA-ATAATTAACATCCCACGGAAGAGTTAA-----AACTA-C-AATCTT-TTTTAGCAATACAAACT-T-----TTcataaatgct
gi|6 : TA-CAG-TTCAGATTGTACA-AC-CTT-CTTGATA------ATTTGATGTTTATGATATTTAATTGACAGTCCATTCAAGAGTT-G-----AATAATTAAATCTT-TTCCAGTATTGTGTACTACATGTATTT--TCTTTTcaaaccacatatgat
gi|7 : AAGATTATTCCCA-----CACTGTTTACGG------AAATAAATGT-G-AA---------------T-GT-----TT---------------TACA-AC-TTT-GTTAATACATGTAGTTTGATGTTTATTATATTTAATTGACAATCCATTCAAGAGAT-G-----G----TC----CTT-TTTCAGCACTGCACACT-C-----TTT--Taaactacatcacatatgctgt
gi|8 : taGATTATACCTG-----CGCTGTTTACAAT---C-AGATAAA-GTAG-AAAAGAT-TGTCTGTCCT-AT-----ATA-AAG-TT-AGATTGTACA-AC-TTT-GTTAATG------AATCGATGTTTATGATATTTAAATTAAAATTCA
gi|9 : atAG-TTTAGATTCTACA-AC-TTTTATTAATA------ATTTGAAGCTTATGATATTCAAGTGCCTATCCCCTTAAGA--T-GAA---AATTGAT-AATACTATTTCAGCA-TGAGTACG-T-----TTT--TCTTa
Alignments
lowQualScore : 22222 2222222222 11111 11111 11111 3333333
lowQualScore : 88888 0 88888 1 3 3 7777777777 4 00000 55 3 1 3 3 3 999999 1 4 55555 4 333 4 4 4 00000 66 6666666
lowQualScore : ..... . ..... . . . .......... . ..... .. . . . . . ...... . . ..... . ... . . . ..... .. .......
lowQualScore : 33333 7 88888 8 6 6 9999999999 4 00000 99 3 0 6 3 3 666666 0 0 55555 0 000 0 9 0 00000 11 3333333
consensus : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT-N---TGAACT-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
Reference ( family-2033 ) : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT-N---TGAACT-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
gi|1 : AAGATTATACCTATAATACGCTGTTTACAAT-A-TTAGATAAATGT-G-AAAAGAT-A---TGGACT-GT-----ATA-AAG-TTCAGATTAAACA-AG-TTT-GTTAATA------ATTTGATGTCAATGATATTCAATTGACAATGAATTCAAAAAAT-G-----GATTCTT-AAACCA-TTTCACCATTGCACACG-C-----TTT--TCTTTTTTC---TTTTGCCATATGACAT
gi|10 : -TTT-GTTA-TA------ATTTGATGTTCATGATATTTTATTGACAATCCATTCATGAGTT-G-----GATCATT-AATCCT-TTTTAGCA-----CAAT-C-----TTTCGTCTTTTtat
gi|11 : GGTTATACTTT-----TACTGTTCAGACT---T-AGGTGAATTT-GCAAAAGAT-G---CGG-CTAGT-----TTA-AAG-TTCATATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTacatgacaccaata
gi|12 : gcGACAATCCATTCAAGAGGT-G-----GGTCATT-TATCTT-TTTCCGAATTGCGCACT-C-------T--TCTTTT
gi|13 : AAGATTATACCTA-----CACTGTGTACAAT-AGT-AGATGAACAT-G-AAAAGATAA---TTAA-T-GT-----TTA-CAG-TTCacatgatatcacataatatgctgtt
gi|14 : T-----TTT-CAG-TTCAGATAGTACA-AC-CTT-ATCAGTA------ATTTGATGTTTCTGATATTTGATTg
gi|15 : ttATTATACCGA-----CACTTTTTACAATGA-T-AGATGAATAT-G--ATAGAT-T---TTAA
gi|16 : AGATTATACCTA-----TGCTGTTTACAAT-ATT-AGATGGATCT-G-AAAAGAtat
gi|17 : AAGAATATACCTA-----CACTGTTTACAATAA-T-AGATGA
gi|2 : ctctaTA-----CACTGTTTA--------------AATAT-G-AAAAGTT-A---TGACCT-GTTAAAGTTATAAG-TTCAAATTATACATATATTT-GTCAATA------ATTTCATGTCAATGATATCTAAGTGGGAATGAATTCAAGAATT-GCAAATCATTATC-AATTTT-TTTCATCATTGCGTATT-C-----TCC--ACATCTCTCAATTTTTACGATATATCAT
gi|3 : GGTTATACATA-----CATTGTTTACAATAA-T-AGATAAATAT-G-AAAACAC-T---TGAA-T-GT-----TTA-CAG-TTCAGATTGTACA-AC-TTT-AATAGTA------ATTTGATGATTTTAATATTTGATAAGCAATTCATTCAAGAGTT-G-----TATTATC-AA--CT-TTTCAGAATTGTGCACT-C-----TTT--TCatttgcag
gi|4 : aacTGTACCTA-----CGCAGTTTACAGT--------TGAATG--------GAT-T---TTAA---AT-----TTA-AAACTTTACATTGCATA-AC-TTT-ATTAATG------ATTCGATGTTGATGATGTT-GATTGA-------------AATT-G-----GATTATC-AAT--T-TTTCAGCATCGTGCACT-C-----TTT--TCTTTT---AA----TACGTTGTGACATaattacatatgcc
gi|5 : ttgcgattatacaTTATACCTA-----CACTGTTTACAATGA-T-AGATGAATAT-G-AAAAGAT-T---TTAA-T-GT-----GTA-CAA-TTAAGGTTGTAAA-AT-TGT-GTTAATA------ATTTGATGCTTATTGTA-ATAATTAACATCCCACGGAAGAGTTAA-----AACTA-C-AATCTT-TTTTAGCAATACAAACT-T-----TTcataaatgct
gi|6 : TA-CAG-TTCAGATTGTACA-AC-CTT-CTTGATA------ATTTGATGTTTATGATATTTAATTGACAGTCCATTCAAGAGTT-G-----AATAATTAAATCTT-TTCCAGTATTGTGTACTACATGTATTT--TCTTTTcaaaccacatatgat
gi|7 : AAGATTATTCCCA-----CACTGTTTACGG------AAATAAATGT-G-AA---------------T-GT-----TT---------------TACA-AC-TTT-GTTAATACATGTAGTTTGATGTTTATTATATTTAATTGACAATCCATTCAAGAGAT-G-----G----TC----CTT-TTTCAGCACTGCACACT-C-----TTT--Taaactacatcacatatgctgt
gi|8 : taGATTATACCTG-----CGCTGTTTACAAT---C-AGATAAA-GTAG-AAAAGAT-TGTCTGTCCT-AT-----ATA-AAG-TT-AGATTGTACA-AC-TTT-GTTAATG------AATCGATGTTTATGATATTTAAATTAAAATTCA
gi|9 : atAG-TTTAGATTCTACA-AC-TTTTATTAATA------ATTTGAAGCTTATGATATTCAAGTGCCTATCCCCTTAAGA--T-GAA---AATTGAT-AATACTATTTCAGCA-TGAGTACG-T-----TTT--TCTTa
blockSeqs : . AGT T A C TGTCTGTCC A TAAAG TA C C T A T CATGTA T A CAAAT A TCC A T A ATGTA CG CTCAATT
blockSeqs : . GAT A . . AATTAA . . A . C . . . . G . AA . TCT . T . . . AA
blockSeqs : . ATT A . . ATGACC . . C . C . . . . T . . . TTT . T . . .
blockSeqs : . AAT C . . GCGGC . . C . C . . . . T . . . TCT . T . . .
blockSeqs : . AAT A . . TTGAA . . C . C . . . . T . . . TCT . A . . .
blockSeqs : . GAT A . . TTTAA . . A . T . . . . T . . . TAC . T . . .
blockSeqs : . T G . . TTTAA . . C . A . . . . T . . . CT . C . . .
blockSeqs : . C A . . . . . C . C . . . . A . . . C . . . . .
blockSeqs : . . G . . . A . T . . . . . . . . T . . . .
blockSeqs : . . G . . . . . . . . .
blockSeqs : . . . . . . .
blockSeqCons : ***** TTGAN*****
originalCons : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT-N---TGAACT-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
finalCons : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGATTTGAN-----T-GT-----TTA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
Alignments
lowQualScore : 22222 11111111 11111111111 11111 11111 3333333
lowQualScore : 88888 0 88888 1 3 3 99999999 4 55555555555 55 3 1 3 3 3 999999 1 4 55555 4 333 4 4 4 00000 66 6666666
lowQualScore : ..... . ..... . . . ........ . ........... .. . . . . . ...... . . ..... . ... . . . ..... .. .......
lowQualScore : 33333 7 88888 8 6 6 00000000 0 77777777777 99 3 0 6 3 3 666666 0 0 55555 0 000 0 9 0 00000 11 3333333
consensus : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT--TTGA-AT-GT-----T-----TA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
Reference ( family-2033 ) : AAGATTATACCTA-----CGCTGTTTACAAT-A-T-AGATGAATGT-G-AAAAGAT--TTGA-NT-GT-----T-----TA-NAG-TTCAGATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTTATGATATTTAATTGACAATCCATTCAAGAGTT-G-----GATTATC-AATCCT-TTTCAGCATTGCGCACT-C-----TTT--TCTTTTCTCAA-TTTTACGATATGACAT
gi|1 : AAGATTATACCTATAATACGCTGTTTACAAT-A-TTAGATAAATGT-G-AAAAGATA-TGGA-CT-GT-----A-----TA-AAG-TTCAGATTAAACA-AG-TTT-GTTAATA------ATTTGATGTCAATGATATTCAATTGACAATGAATTCAAAAAAT-G-----GATTCTT-AAACCA-TTTCACCATTGCACACG-C-----TTT--TCTTTTTTC---TTTTGCCATATGACAT
gi|10 : -TTT-GTTA-TA------ATTTGATGTTCATGATATTTTATTGACAATCCATTCATGAGTT-G-----GATCATT-AATCCT-TTTTAGCA-----CAAT-C-----TTTCGTCTTTTtat
gi|11 : GGTTATACTTT-----TACTGTTCAGACT---T-AGGTGAATTT-GCAAAAGAT--GCGG-CTAGT-----T-----TA-AAG-TTCATATTGTACA-AC-TTT-GTTAATA------ATTTGATGTTacatgacaccaata
gi|12 : gcGACAATCCATTCAAGAGGT-G-----GGTCATT-TATCTT-TTTCCGAATTGCGCACT-C-------T--TCTTTT
gi|13 : AAGATTATACCTA-----CACTGTGTACAAT-AGT-AGATGAACAT-G-AAAAGATAATT-A-AT-GT-----T-----TA-CAG-TTCacatgatatcacataatatgctgtt
gi|14 : T-----T-----TT-CAG-TTCAGATAGTACA-AC-CTT-ATCAGTA------ATTTGATGTTTCTGATATTTGATTg
gi|15 : ttATTATACCGA-----CACTTTTTACAATGA-T-AGATGAATAT-G--ATAGAT--TTTA-AT-AT-----
gi|16 : AGATTATACCTA-----TGCTGTTTACAAT-ATT-AGATGGATCT-G-AAAAGA
gi|17 : AAGAATATACCTA-----CACTGTTTACAATAA-T-AGATGA
gi|2 : ctctaTA-----CACTGTTTA--------------AATAT-G-AAAAGTT--ATGACCT-GTTAAAGT-----TATAAG-TTCAAATTATACATATATTT-GTCAATA------ATTTCATGTCAATGATATCTAAGTGGGAATGAATTCAAGAATT-GCAAATCATTATC-AATTTT-TTTCATCATTGCGTATT-C-----TCC--ACATCTCTCAATTTTTACGATATATCAT
gi|3 : GGTTATACATA-----CATTGTTTACAAT-AAT-AGATAAATAT-G-AAAACAC--TTGA-AT-GT-----T-----TA-CAG-TTCAGATTGTACA-AC-TTT-AATAGTA------ATTTGATGATTTTAATATTTGATAAGCAATTCATTCAAGAGTT-G-----TATTATC-AA--CT-TTTCAGAATTGTGCACT-C-----TTT--TCatttgcag
gi|4 : aacTGTACCTA-----CGCAGTTTACAGT--------TGAATG--------GAT--TTTA-A--AT-----T-----TA-AAACTTTACATTGCATA-AC-TTT-ATTAATG------ATTCGATGTTGATGATGTT-GATTGA-------------AATT-G-----GATTATC-AAT--T-TTTCAGCATCGTGCACT-C-----TTT--TCTTTT---AA----TACGTTGTGACATaattacatatgcc
gi|5 : ttgcgattatacaTTATACCTA-----CACTGTTTACAATGA-T-AGATGAATAT-G-AAAAGAT--TTTA-AT-GT-----G-----TA-CAA-TTAAGGTTGTAAA-AT-TGT-GTTAATA------ATTTGATGCTTATTGTA-ATAATTAACATCCCACGGAAGAGTTAA-----AACTA-C-AATCTT-TTTTAGCAATACAAACT-T-----TTcataaatgct
gi|6 : -----TA-CAG-TTCAGATTGTACA-AC-CTT-CTTGATA------ATTTGATGTTTATGATATTTAATTGACAGTCCATTCAAGAGTT-G-----AATAATTAAATCTT-TTCCAGTATTGTGTACTACATGTATTT--TCTTTTcaaaccacatatgat
gi|7 : AAGATTATTCCCA-----CACTGTTTACGG------AAATAAATGT-G-AA-------------T-GT-----T-----T---------------TACA-AC-TTT-GTTAATACATGTAGTTTGATGTTTATTATATTTAATTGACAATCCATTCAAGAGAT-G-----G----TC----CTT-TTTCAGCACTGCACACT-C-----TTT--Taaactacatcacatatgctgt
gi|8 : taGATTATACCTG-----CGCTGTTTACAAT---C-AGATAAA-GTAG-AAAAGAT--T-GT-CT-GT-----CCTATATA-AAG-TT-AGATTGTACA-AC-TTT-GTTAATG------AATCGATGTTTATGATATTTAAATTAAAATTCA
gi|9 : atAG-TTTAGATTCTACA-AC-TTTTATTAATA------ATTTGAAGCTTATGATATTCAAGTGCCTATCCCCTTAAGA--T-GAA---AATTGAT-AATACTATTTCAGCA-TGAGTACG-T-----TTT--TCTTa